Citrus Sinensis ID: 000867
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1247 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.976 | 0.849 | 0.708 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.971 | 0.851 | 0.707 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.988 | 0.846 | 0.707 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.988 | 0.846 | 0.706 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.983 | 0.835 | 0.683 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.989 | 0.842 | 0.692 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.991 | 0.852 | 0.675 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.974 | 0.846 | 0.692 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.987 | 0.853 | 0.679 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.983 | 0.851 | 0.669 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1896 bits (4912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 903/1275 (70%), Positives = 1045/1275 (81%), Gaps = 57/1275 (4%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAGKLD LK +G+V+YNGH + EFVPQRTAAYISQHD+HIG
Sbjct: 189 MTLLLGPPSSGKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIG 248
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETL FSARCQGVGSR++ML EL+RREK A IKPD DID+YMKAAATEGQEANV+T
Sbjct: 249 EMTVRETLEFSARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVT 308
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DT+VGD+M+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 309 DYVLKILGLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTT 368
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+ IVNS+RQ++ IL GTAVISLLQPAPETY+LFDDIILLSD IVYQGPR+ VL+FFESM
Sbjct: 369 YSIVNSLRQSVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESM 428
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCP+RKGVADFLQEVTS+KDQQQYW + PYRF+T++EF+EA+QSF VG+KL DEL
Sbjct: 429 GFKCPQRKGVADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELA 488
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK K HPAALT + YG+GKKELLK RELLLMKRNSFVY+FK +QL+ MAL++MT
Sbjct: 489 TPFDKTKCHPAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMT 548
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LFFRT+M +D+ DGGIY GA FF V+M MFNGMS+++MTI KLPVFYKQRDL F+ +WA
Sbjct: 549 LFFRTEMPRDTTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWA 608
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YA+P+WILKIP++ +EV +WV LTYYVIGFDPNI R KQFLLL++VNQMAS +FRFI A
Sbjct: 609 YAIPSWILKIPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGA 668
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GR M VA +FGSF LL+ FA GGFVLSRDD+K WW+WGYW SPMMY+ N+I+ NEF G
Sbjct: 669 VGRTMGVASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGK 728
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
W NETLG V+KSRGFFP AYWYW+G+GA +GF ++FN ++L+L +LN F+K
Sbjct: 729 KWNHIVPGGNETLGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDK 788
Query: 601 PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVG 660
P+AV+ ++ E+ + +G SS T ++ D ++
Sbjct: 789 PQAVLPEDGEN-------------AENGEVSSQITSTDGGD----------------SIS 819
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTA 720
Q K+GMVLPFEPHS+TFD+V YSVDMP+EMK QG ED+L+LL GVSGAFRPGVLTA
Sbjct: 820 ESQNNKKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTA 879
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780
LMGVSGAGKTTLMDVLAGRKTGGYI G I ISGYPKKQETF RISGYCEQNDIHSP+VTV
Sbjct: 880 LMGVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTV 939
Query: 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTI 840
YESL+YSAWLRLP +VD +T+KMF++E+MELVEL PLR +LVGLPG +GLSTEQRKRLTI
Sbjct: 940 YESLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVGLPGVNGLSTEQRKRLTI 999
Query: 841 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE- 899
AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDE
Sbjct: 1000 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1059
Query: 900 ---------------------------GIPGVENIKDGYNPATWMLEVTAKSQELTLEID 932
PGV IK+GYNPATWMLEVTA +QE+ L ID
Sbjct: 1060 FLMKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGID 1119
Query: 933 FTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNP 992
FT++YK S+LYRRNKALI EL P PGSKDL+F T Y+QSF+ QCVACLWKQHWSYWRNP
Sbjct: 1120 FTEVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNP 1179
Query: 993 PYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVV 1052
YTAVRF+FTT IAL FGTMFWD+GTK+ ++QDL NAMGSMY AV FLG Q SSVQPVV
Sbjct: 1180 AYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVV 1239
Query: 1053 AVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWY 1112
A+ER VF RE+ AGMYSA+PYAF QV IEIPYIFV S YGIIVYAMIGFEW KFFWY
Sbjct: 1240 AIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWY 1299
Query: 1113 LFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYY 1172
LF MFF+LLYFTFYGMM VA+TPN ++A+IV+ FYG+WN+FSGF+IPR R+P+WWRWYY
Sbjct: 1300 LFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYY 1359
Query: 1173 WANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLFG 1232
WANPVAWT+YGLVASQFGD++ K+ ETV+QF+R YF FKHDFLGVVA V+ A+ +F
Sbjct: 1360 WANPVAWTLYGLVASQFGDIQTKLSDNETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFA 1419
Query: 1233 VLFAVGIKRFNFQNR 1247
FA IK FNFQ R
Sbjct: 1420 FTFAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1894 bits (4906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 903/1277 (70%), Positives = 1038/1277 (81%), Gaps = 65/1277 (5%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
M LLLGPP SGKTTLLLALAGKLD +LK +GRVTYNGHGM+EFVPQRTAAYI Q+DVHIG
Sbjct: 182 MALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIG 241
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRET A++AR QGVGSRYDMLTELARREKEA IKPDPDID++MKA +T G++ NV+T
Sbjct: 242 EMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMT 301
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLEVC DT+VGD+M+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 302 DYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTT 361
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS+R +HI NGTA+ISLLQPAPET++LFDDIIL+++ +I+Y+GPR+ V++FFE+M
Sbjct: 362 YQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETM 421
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCP RKGVADFLQEVTS+KDQ QYW ++ PYRF+ +EF+EAFQSF VG+++ DEL
Sbjct: 422 GFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELA 481
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFDK KSHPAALTTK YGVG KEL+K + SRE LLMKRNSFVY FK QL MA ++MT
Sbjct: 482 LPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMT 541
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LFFRT+M K + DG +Y GA FF +MM MFNGMS++SMTIAKLPVFYKQRDL FY AW
Sbjct: 542 LFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWV 601
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
Y+LP W+LKIPISF+E A+ F+TYYVIGFDPN+GRLFKQ++LL+L+NQMASALF+ +AA
Sbjct: 602 YSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAA 661
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GRNMIVA +FG+F +LV FA GG VLSRDDIKKWW+WGYW SP+MY QNAI+ANEFFGH
Sbjct: 662 LGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGH 721
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
SW + NS+ETLGV LKSRGF PHAYWYW+G GA +GFV+LFN GFTL+LTFLN K
Sbjct: 722 SWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGK 781
Query: 601 PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQR-EVTV 659
P+AVI++E S++ ++L S R E V
Sbjct: 782 PQAVIAEEPASDE-----------------------------------TELQSARSEGVV 806
Query: 660 GAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLT 719
A KKRGMVLPFEPHS+TFD V YSVDMP+EM QG ED+L+LL GV+GAFRPGVLT
Sbjct: 807 EAGANKKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLT 866
Query: 720 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVT 779
ALMGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPK Q+TF RISGYCEQ DIHSP VT
Sbjct: 867 ALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVT 926
Query: 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLT 839
VYESL+YSAWLRLP EVD +K+FIEE+MELVEL PLRQ+LVGLPGESGLSTEQRKRLT
Sbjct: 927 VYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLT 986
Query: 840 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDE
Sbjct: 987 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1046
Query: 900 ----------------------------GIPGVENIKDGYNPATWMLEVTAKSQELTLEI 931
I G+ I +GYNPATWMLEV+ SQE L +
Sbjct: 1047 LFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGV 1106
Query: 932 DFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRN 991
DF +YK SELY+RNK LI+ELS+PAPGSKDLYFPT Y+QSF QC+A LWKQHWSYWRN
Sbjct: 1107 DFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRN 1166
Query: 992 PPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPV 1051
PPYTAVRFLFT IAL FGTMFWD+G K K QDL NAMGSMYTAV FLG Q +SVQPV
Sbjct: 1167 PPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPV 1226
Query: 1052 VAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFW 1111
V VER VF RE+ AGMYSAMPYAFAQV IEIPY+ V + VYG+IVYAMIGFEW A KFFW
Sbjct: 1227 VNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFW 1286
Query: 1112 YLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWY 1171
YLFFM+ S L FTFYGMM VAMTPNHHIA++VS FYG+WN+FSGF+IPR +P+WW WY
Sbjct: 1287 YLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWY 1346
Query: 1172 YWANPVAWTMYGLVASQFGDVEDKM-ESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVL 1230
YW PVAWT+YGL+ASQFGD+ + M +S +VKQF+R ++ ++ FLGVVA + F +L
Sbjct: 1347 YWLCPVAWTLYGLIASQFGDITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLL 1406
Query: 1231 FGVLFAVGIKRFNFQNR 1247
F V+FA+GIK FNFQ R
Sbjct: 1407 FAVIFAIGIKSFNFQKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1860 bits (4817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 905/1280 (70%), Positives = 1031/1280 (80%), Gaps = 47/1280 (3%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAG+L LK SG+VTYNGHGM+EFVP+RTAAYISQHD+HIG
Sbjct: 192 MTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIG 251
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVGSR+DMLTEL+RREK A IKPD DID +MKAAA GQEANV T
Sbjct: 252 EMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNT 311
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLE+C DT+VGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 312 DYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 371
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIVNS+RQ +HIL GTAVISLLQPAPETY+LFDDIILLSD QIVYQGPRE VL+FFESM
Sbjct: 372 FQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESM 431
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCP+RKGVADFLQEVTS+KDQ+QYW + PYRFVT +EF AFQSF G+ +A+EL
Sbjct: 432 GFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELA 491
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFDK KSHPAAL T YG KELLKANI RE+LLMKRNSFVY+F+ QL ++L++MT
Sbjct: 492 VPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMT 551
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LFFRTKM +DSV+ GGIY+GA FF V+M MFNG S++++T+ KLPVF+KQRDL FY AW+
Sbjct: 552 LFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWS 611
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
Y +P+WILKIPI+F+EV +VFLTYYVIGFD N+G FKQ+LL+L +NQMA +LFRFI
Sbjct: 612 YTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGG 671
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
A RNMIVA F SF+LL+ GGF+L+R+ +KKWW+WGYW SPMMYAQNAI NE GH
Sbjct: 672 AARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGH 731
Query: 541 SWRKF--TSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQF 598
SW K +S SNETLGVQVLKSRG FP A WYW+G GA IGF +LFN FTL+LT+L +
Sbjct: 732 SWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPY 791
Query: 599 EKPRAVISDES---ESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQR 655
R +S+E + +L I G LS+ + +E++ V D
Sbjct: 792 GNSRQSVSEEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDD-------DT 844
Query: 656 EVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRP 715
EVT +RGMVLPF P SL+FD V YSVDMP+EMK QG+ +D+L LL GVSG+FRP
Sbjct: 845 EVT-------QRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRP 897
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHS 775
GVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETF R+SGYCEQNDIHS
Sbjct: 898 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHS 957
Query: 776 PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835
P VTVYESLL+SAWLRLP +VDS T+KMFIEE+MELVEL LR +LVGLPG +GLSTEQR
Sbjct: 958 PQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQR 1017
Query: 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 895
KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFE
Sbjct: 1018 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFE 1077
Query: 896 SFDE----------------------------GIPGVENIKDGYNPATWMLEVTAKSQEL 927
+FDE IPGV IKDGYNPATWMLEVT QE
Sbjct: 1078 AFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQ 1137
Query: 928 TLEIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWS 987
L +DF+DIYK SELY+RNKALI++LS+PAP S DLYFPT Y+QS QC+ACLWKQ+ S
Sbjct: 1138 ALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLS 1197
Query: 988 YWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSS 1047
YWRNPPY AVRF FTTVIAL FGT+FWD+G K+ ++QDLFNAMGSMY AV F+G C+S
Sbjct: 1198 YWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTS 1257
Query: 1048 VQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAA 1107
VQPVVAVER VF RE+ AGMYSA PYAF QV+IEIPY V ++VYGIIVYAMIGFEW AA
Sbjct: 1258 VQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAA 1317
Query: 1108 KFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLW 1167
KFFWYLFFM F+LLYFTFYGMM V +TPN+HIA+IVS FY +WN+FSGFVIPR R+P+W
Sbjct: 1318 KFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIW 1377
Query: 1168 WRWYYWANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVVAAF 1227
WRWY WA PVAWT+YGLV SQFGD+E ME G VK FV +YF FKH +LG VA VVAAF
Sbjct: 1378 WRWYCWACPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAF 1437
Query: 1228 AVLFGVLFAVGIKRFNFQNR 1247
A LF LF I +FNFQ R
Sbjct: 1438 AFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1858 bits (4814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 904/1280 (70%), Positives = 1030/1280 (80%), Gaps = 47/1280 (3%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAG+L LK SG+VTYNGHGM+EFVP+RTAAYISQHD+HIG
Sbjct: 192 MTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIG 251
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVGSR+DMLTEL+RREK A IKPD DID +MKAAA GQEANV T
Sbjct: 252 EMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNT 311
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLE+C DT+VGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 312 DYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 371
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIVNS+RQ +HIL GTAVISLLQPAPETY+LFDDIILLSD QIVYQGPRE VL+FFES
Sbjct: 372 FQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFEST 431
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCP+RKGVADFLQEVTS+KDQ+QYW + PYRFVT +EF AFQSF G+ +A+EL
Sbjct: 432 GFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELA 491
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFDK KSHPAAL T YG KELLKANI RE+LLMKRNSFVY+F+ QL ++L++MT
Sbjct: 492 VPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMT 551
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LFFRTKM +DSV+ GGIY+GA FF V+M MFNG S++++T+ KLPVF+KQRDL FY AW+
Sbjct: 552 LFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWS 611
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
Y +P+WILKIPI+F+EV +VFLTYYVIGFD N+G FKQ+LL+L +NQMA +LFRFI
Sbjct: 612 YTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGG 671
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
A RNMIVA F SF+LL+ GGF+L+R+ +KKWW+WGYW SPMMYAQNAI NE GH
Sbjct: 672 AARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGH 731
Query: 541 SWRKF--TSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQF 598
SW K +S SNETLGVQVLKSRG FP A WYW+G GA IGF +LFN FTL+LT+L +
Sbjct: 732 SWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPY 791
Query: 599 EKPRAVISDES---ESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQR 655
R +S+E + +L I G LS+ + +E++ V D
Sbjct: 792 GNSRQSVSEEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDD-------DT 844
Query: 656 EVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRP 715
EVT +RGMVLPF P SL+FD V YSVDMP+EMK QG+ +D+L LL GVSG+FRP
Sbjct: 845 EVT-------QRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRP 897
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHS 775
GVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETF R+SGYCEQNDIHS
Sbjct: 898 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHS 957
Query: 776 PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835
P VTVYESLL+SAWLRLP +VDS T+KMFIEE+MELVEL LR +LVGLPG +GLSTEQR
Sbjct: 958 PQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQR 1017
Query: 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 895
KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFE
Sbjct: 1018 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFE 1077
Query: 896 SFDE----------------------------GIPGVENIKDGYNPATWMLEVTAKSQEL 927
+FDE IPGV IKDGYNPATWMLEVT QE
Sbjct: 1078 AFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQ 1137
Query: 928 TLEIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWS 987
L +DF+DIYK SELY+RNKALI++LS+PAP S DLYFPT Y+QS QC+ACLWKQ+ S
Sbjct: 1138 ALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLS 1197
Query: 988 YWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSS 1047
YWRNPPY AVRF FTTVIAL FGT+FWD+G K+ ++QDLFNAMGSMY AV F+G C+S
Sbjct: 1198 YWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTS 1257
Query: 1048 VQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAA 1107
VQPVVAVER VF RE+ AGMYSA PYAF QV+IEIPY V ++VYGIIVYAMIGFEW AA
Sbjct: 1258 VQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAA 1317
Query: 1108 KFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLW 1167
KFFWYLFFM F+LLYFTFYGMM V +TPN+HIA+IVS FY +WN+FSGFVIPR R+P+W
Sbjct: 1318 KFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIW 1377
Query: 1168 WRWYYWANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVVAAF 1227
WRWY WA PVAWT+YGLV SQFGD+E ME G VK FV +YF FKH +LG VA VVAAF
Sbjct: 1378 WRWYCWACPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAF 1437
Query: 1228 AVLFGVLFAVGIKRFNFQNR 1247
A LF LF I +FNFQ R
Sbjct: 1438 AFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1804 bits (4673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 877/1283 (68%), Positives = 1017/1283 (79%), Gaps = 56/1283 (4%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTT LLALAG+L LKFSG+VTYNGH M++FVPQRTAAYISQHD+HIG
Sbjct: 206 MTLLLGPPGSGKTTFLLALAGRL-KDLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIG 264
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETL+FSARCQGVGSR+DMLTEL RREK A IKPD D+D +MKA+A EGQE+N++T
Sbjct: 265 EMTVRETLSFSARCQGVGSRFDMLTELTRREKAANIKPDADVDAFMKASAMEGQESNLIT 324
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLE+C DT+VGD+MVRGISGGQ+KRVTTGEM+VGPA A FMDEISTGLDSSTT
Sbjct: 325 DYILKILGLEICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTT 384
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIV S+RQ IHIL GTAVISLLQPAPETYDLFDDIILLSD IVYQGPRE VL+FFE M
Sbjct: 385 FQIVKSLRQTIHILGGTAVISLLQPAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELM 444
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKGVADFLQEVTSRKDQ+QYW + PYR+V +EF+ AFQSF G+ +A+EL
Sbjct: 445 GFKCPERKGVADFLQEVTSRKDQKQYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELA 504
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK KSHPAALTT YGV ELLKANI RELLL+KRNSFVYIF+ QL +++ ++MT
Sbjct: 505 TPFDKSKSHPAALTTSRYGVSAMELLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMT 564
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+FFRTKMH+DSV+DG I++GA FFAVMM M NG+S++ +TI KLPVF+KQRDL F+ AW
Sbjct: 565 VFFRTKMHRDSVADGVIFMGALFFAVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWT 624
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
Y +P+WILK P+SF+EV + F++YYVIGFDPN+GR FKQ+LL+L V+QMA+ALFRF+
Sbjct: 625 YTIPSWILKSPMSFIEVGGFCFMSYYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGG 684
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
A RN+IVA FGSF+LL+ GGF+L+RD + KWW+WGYW SPMMYAQNA+ NEF GH
Sbjct: 685 AARNLIVANVFGSFMLLIFMVLGGFILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGH 744
Query: 541 SWRKFTSN--SNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQF 598
SW K +N SNETLGVQ L SRG FP A WYW+G GA +GF++LFNI FTL+LT+L
Sbjct: 745 SWDKVLNNSLSNETLGVQALMSRGIFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPD 804
Query: 599 EKPRAVISDESESNDLGNRIGGTAQLSTHGSNS------SHKTCSESEDITVKDSFSQLL 652
K + IS+E N G + T S++ S T SE D +
Sbjct: 805 GKSQPSISEEELKEKQANINGNVLDVDTMASSNNLAIVGSTGTGSEIADNS--------- 855
Query: 653 SQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGA 712
QP +RGMVLPF P SLTF+++ YSVDMP+EMK GI+ED+L LL GVSG
Sbjct: 856 ----------QPTQRGMVLPFTPLSLTFEDIKYSVDMPQEMKAHGIVEDRLELLKGVSGC 905
Query: 713 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQND 772
FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GNI+ISGYPKKQETF R+SGYCEQND
Sbjct: 906 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQETFARVSGYCEQND 965
Query: 773 IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832
IHSP VTV ESLL+SAWLRLP +VDS T+KMFIEE+MELVEL PLR +LVGLPG +GLS
Sbjct: 966 IHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSI 1025
Query: 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 892
EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSID
Sbjct: 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSID 1085
Query: 893 IFESFD----------------------------EGIPGVENIKDGYNPATWMLEVTAKS 924
IFE+FD EGI GV I DGYNPATWMLEVT S
Sbjct: 1086 IFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQGVSKITDGYNPATWMLEVTTVS 1145
Query: 925 QELTLEIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQ 984
QE L++DF DIY+ SEL++RNKALI+ELS P PGS +LYFPT Y+QSF +QC+ACLWKQ
Sbjct: 1146 QEQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTQYSQSFLIQCLACLWKQ 1205
Query: 985 HWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQY 1044
H SYWRNPPY A+R FTTVIAL FGT+FWD+G KM ++QDLFNAMGSMY AV F+G
Sbjct: 1206 HLSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGKMGQSQDLFNAMGSMYAAVLFIGVLN 1265
Query: 1045 CSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEW 1104
SVQPVV+VER VF RE+ AGMYSA+PYAF QV IE PY V S +Y IIVY+MIGF+W
Sbjct: 1266 GQSVQPVVSVERTVFYRERAAGMYSALPYAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQW 1325
Query: 1105 IAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRI 1164
AKFFWYLFFMFF+LLYFTFYGMM V +TP++H+A+IVS FY +WN+F+GFVI R
Sbjct: 1326 TVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVSSAFYAIWNLFTGFVISRPAT 1385
Query: 1165 PLWWRWYYWANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVV 1224
P+WWRWY W PVAWT+YGL+ SQ+GD+ M+ G V FV +YFDFKH +LG VAVV+
Sbjct: 1386 PVWWRWYCWICPVAWTLYGLIVSQYGDIVTPMDDGIPVNVFVENYFDFKHSWLGFVAVVI 1445
Query: 1225 AAFAVLFGVLFAVGIKRFNFQNR 1247
AF +LF LF I + NFQ R
Sbjct: 1446 VAFTMLFAFLFGFAIMKLNFQKR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1795 bits (4650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 884/1277 (69%), Positives = 1028/1277 (80%), Gaps = 43/1277 (3%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAG+L +KFSG+VTYNGH M++FVPQRTAAYISQHD+HIG
Sbjct: 201 MTLLLGPPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIG 260
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETL+FSARCQGVGSR+DMLTEL+RREK A IKPD DID +MKA+A EGQE N++T
Sbjct: 261 EMTVRETLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLIT 320
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DT+VGD+MVRGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 321 DYILKILGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 380
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIV S+RQ IHIL GTAVISLLQPAPETYDLFDDIILLSD QIVYQGPRE VL+FFE M
Sbjct: 381 FQIVKSLRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELM 440
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKGVADFLQEVTSRKDQ+QYW+ + PYR+V ++F+ AFQSF G+ +A+EL
Sbjct: 441 GFKCPERKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELA 500
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK K+HPAALTT YGV ELLKANI RE LLMKRNSFVYIF+ QL ++ ++MT
Sbjct: 501 TPFDKSKNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMT 560
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+FFRTKMH+DSV+DG I++GA FF+VMM MFNG+S++ +TI KLPVF+KQRDL F+ AW
Sbjct: 561 VFFRTKMHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWT 620
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
Y +P+WILKIP+SF+EV +VF++YYVIGFDP+ GR FKQ+LL+L +NQMA+ALFRF+
Sbjct: 621 YTIPSWILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGG 680
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
A RNMIVA FGSF+LL+ GGF+L R+ +KKWW+WGYW SPMMYAQNAI NEF GH
Sbjct: 681 AARNMIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGH 740
Query: 541 SWRKFTSN--SNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQF 598
SW K +N SNETLGVQ L+SRG FP A WYW+G GA +GF++LFN FTL+LT+L +
Sbjct: 741 SWDKVLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPY 800
Query: 599 EKPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVT 658
K + +S+E N G + T S+++ +E + E+
Sbjct: 801 GKSQPSVSEEELKEKQANINGNVLDVDTMASSTNLAIVDNTE------------TSSEIA 848
Query: 659 VGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVL 718
+ QP +RGMVLPF P SLTFD + YSVDMP+EMK GI+ED+L LL GVSG+FRPGVL
Sbjct: 849 DNS-QPTQRGMVLPFAPLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVL 907
Query: 719 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFV 778
TALMGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETF R+SGYCEQNDIHSP V
Sbjct: 908 TALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQV 967
Query: 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838
TV ESLL+SAWLRLP +VDS T+KMFIEE+MELVEL PLR +LVGLPG +GLSTEQRKRL
Sbjct: 968 TVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRL 1027
Query: 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 898
TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FD
Sbjct: 1028 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1087
Query: 899 ----------------------------EGIPGVENIKDGYNPATWMLEVTAKSQELTLE 930
EGI GV IKDGYNPATWMLEV+ SQE L
Sbjct: 1088 ELFLMKRGGEEIYVGPLGHQSSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALG 1147
Query: 931 IDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWR 990
+DF DIY+ SEL++RNKALI+ELS P PGS +LYFPT Y+ SF QC+ACLWK H SYWR
Sbjct: 1148 VDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWR 1207
Query: 991 NPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQP 1050
NPPY A+R FTTVIAL FGT+FWD+G K ++QDLFNAMGSMY+AV F+G SVQP
Sbjct: 1208 NPPYNAIRLFFTTVIALLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQP 1267
Query: 1051 VVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFF 1110
VV+VER VF RE+ AGMYSA PYAF QV IE PY V S +YGIIVY+MIGF+W AAKFF
Sbjct: 1268 VVSVERTVFYRERAAGMYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFF 1327
Query: 1111 WYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRW 1170
WYLFFMFF+ LYFTFYGMM V +TP++H+A+IVS FYG+WN+FSGF+IPR ++P+WWRW
Sbjct: 1328 WYLFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRW 1387
Query: 1171 YYWANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVL 1230
Y W PVAWT+YGLVASQFGD+ M+ G VK FV +YFDFKH +LGVVAVV+ AF +L
Sbjct: 1388 YCWICPVAWTLYGLVASQFGDIMTPMDDGTPVKIFVENYFDFKHSWLGVVAVVIVAFTML 1447
Query: 1231 FGVLFAVGIKRFNFQNR 1247
F LF I + NFQ R
Sbjct: 1448 FAFLFGFAIMKLNFQKR 1464
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1784 bits (4620), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 862/1276 (67%), Positives = 1011/1276 (79%), Gaps = 40/1276 (3%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAGKLD LK SG+VTYNGHGM EFVP+RTAAYISQHD+HIG
Sbjct: 186 MTLLLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIG 245
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVG+RY+MLTELARREK A IKPD DID+YMKA+A GQE++V+T
Sbjct: 246 EMTVRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVT 305
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DT+VG+EM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 306 DYILKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 365
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS+RQ IHIL GTAVISLLQPAPETY+LFDDIILLSD Q+VYQGPRE VL+FFE M
Sbjct: 366 YQIVNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFM 425
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GF+CP RKGVADFLQEVTSRKDQ QYW ++ PYRFV ++F++AF+SF VG+ + +EL
Sbjct: 426 GFRCPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELS 485
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFD+ +SHPAAL T YGV +KELLKA I RELLLMKRN+F+YIFK L+ MAL+ MT
Sbjct: 486 EPFDRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMT 545
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
FFRT M D G IY+GA +FA+ MFNG ++++MT+ KLPVF+KQRDL F+ AWA
Sbjct: 546 TFFRTSMRHDR-DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWA 604
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
Y +P+WIL+IPI+FLEV V+VF+TYYVIGFDP++ R FKQ+LLLL +NQM+SALFRFIA
Sbjct: 605 YTIPSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAG 664
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GR+M+V+ +FG LL A GGF+L+R D+KKWW+WGYW SP+ YAQNAI NEF GH
Sbjct: 665 IGRDMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGH 724
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
SW + N TLGV VLKSRG F A WYW+GLGA +G+ LLFN+ +T++L+ L+ F
Sbjct: 725 SWSQILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTD 784
Query: 601 PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVG 660
A +S+++ N G + G + E E + D S + S
Sbjct: 785 SHASMSEDALKEKHANLTGEVVE----GQKDTKSRKQELELSHIADQNSGINSADS---- 836
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTA 720
++GMVLPF P S++F++V YSVDMP+ MK QGI ED+L+LL GVSG+FRPGVLTA
Sbjct: 837 --SASRKGMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTA 894
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780
LMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETF RISGYCEQNDIHSP VTV
Sbjct: 895 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTV 954
Query: 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTI 840
YESL++SAWLRLP EVDSE +KMFIEE+M+LVEL LR +LVGLPG SGLSTEQRKRLTI
Sbjct: 955 YESLVFSAWLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTI 1014
Query: 841 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE- 899
AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFE+FDE
Sbjct: 1015 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDEL 1074
Query: 900 ---------------------------GIPGVENIKDGYNPATWMLEVTAKSQELTLEID 932
GI GV IKDGYNPATWMLEVT+ +QE L +D
Sbjct: 1075 FLMKRGGEEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVD 1134
Query: 933 FTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNP 992
F++IY+ SELY+RNK LIEELS P PGS DL FPT Y++SF QC+ACLWKQ+WSYWRNP
Sbjct: 1135 FSEIYRQSELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNP 1194
Query: 993 PYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVV 1052
YTAVR LFT VIAL FGTMFW++GT+ K+ QDLFNAMGSMY AV ++G Q SVQPVV
Sbjct: 1195 SYTAVRLLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVV 1254
Query: 1053 AVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWY 1112
VER VF RE+ AGMYSA PYAF QV IE+PYI V + +YG++VY+MIGFEW AKF WY
Sbjct: 1255 VVERTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWY 1314
Query: 1113 LFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYY 1172
LFFM+F+LLYFTFYGMM V +TPN IAAI+S FY +WN+FSG++IPR +IP+WWRWY
Sbjct: 1315 LFFMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYC 1374
Query: 1173 WANPVAWTMYGLVASQFGDVEDKMESG-ETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLF 1231
W PVAWT+YGLVASQFGD++ +E TV QFV YF F H+FL VVAVV FAV F
Sbjct: 1375 WICPVAWTLYGLVASQFGDIQHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTF 1434
Query: 1232 GVLFAVGIKRFNFQNR 1247
LF+ I +FNFQ R
Sbjct: 1435 AFLFSFAIMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1777 bits (4603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 884/1276 (69%), Positives = 1055/1276 (82%), Gaps = 61/1276 (4%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAGKLDS LK +G+VTYNGH + EFVPQRTAAYISQHD+HIG
Sbjct: 193 MTLLLGPPGSGKTTLLLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIG 252
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETL FSARCQGVGSRY+ML EL+RREK A IKPD DID++MKAA+TEGQEA V+T
Sbjct: 253 EMTVRETLEFSARCQGVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVT 312
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DT+VGD+M+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 313 DYILKILGLDICADTMVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTT 372
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+ IVNS++Q++ I+ GTA+ISLLQPAPETY+LFDDIILLSD IVY+GPRE VL+FFESM
Sbjct: 373 YSIVNSLKQSVRIMKGTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESM 432
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKG ADFLQEVTS+KDQQQYW+ ++ PYRF+T++EF+EA+QSF VG+K++DEL+
Sbjct: 433 GFKCPERKGAADFLQEVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELK 492
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
T FDK KSHPAALTT+ YG+GK++LLK RELLLM+RNSFVY+FK QL +AL++MT
Sbjct: 493 TTFDKSKSHPAALTTQKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMT 552
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+FFRTKM +DS DGGIY GA FF V+M MFNG+S++ MT+ KLPVFYKQRD FY +WA
Sbjct: 553 IFFRTKMPRDSAEDGGIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWA 612
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YA+P+WILKIP++F EV +WVFLTYYV+GFDPN+GR FKQFLLLLLVNQMASALFRFIAA
Sbjct: 613 YAIPSWILKIPVTFAEVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAA 672
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GR M VA +FG+F LL+ FA GGF+L+R+D+K WW+WGYW SP+MY+ NAI+ NEF G
Sbjct: 673 VGRTMGVASTFGAFALLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQ 732
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
W+ + E LG V+++RGFFP AYWYW+G+GA GF+++FNI ++++L +LN F+K
Sbjct: 733 KWKHIVAGGTEPLGAAVVRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDK 792
Query: 601 PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVG 660
P+A ISDESE+N+ + + Q++ S+ + S SE+
Sbjct: 793 PQATISDESENNESES----SPQIT-----STQEGDSASEN------------------- 824
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTA 720
KK+GMVLPF+PHS+TFDEV YSVDMP EM+ G +++L+LL VSGAFRPGVLTA
Sbjct: 825 ----KKKGMVLPFDPHSITFDEVVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTA 880
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780
LMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQ+TF RISGYCEQNDIHSP+VTV
Sbjct: 881 LMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTV 940
Query: 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTI 840
+ESL+YSAWLRLP +V+ E + MF+EE+M+LVEL PLR +LVGLPG +GLSTEQRKRLTI
Sbjct: 941 FESLVYSAWLRLPQDVNEEKRMMFVEEVMDLVELTPLRSALVGLPGVNGLSTEQRKRLTI 1000
Query: 841 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD-- 898
AVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFE+FD
Sbjct: 1001 AVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1060
Query: 899 --------------------------EGIPGVENIKDGYNPATWMLEVTAKSQELTLEID 932
E IPGV I +GYNPATWMLEVTA SQE+ L +D
Sbjct: 1061 FLMKRGGQEIYVGPLGRQSCHLIKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVD 1120
Query: 933 FTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNP 992
FTD+YK S+LYRRNKALI+ELS P PG+ DL+F + ++Q F+ QC+ACLWKQHWSYWRNP
Sbjct: 1121 FTDLYKKSDLYRRNKALIDELSVPRPGTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNP 1180
Query: 993 PYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVV 1052
YTAVR +FTT IAL FGTMFWD+GTK+ RNQDL NAMGSMY AV FLG Q SSVQPVV
Sbjct: 1181 AYTAVRLIFTTFIALIFGTMFWDIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVV 1240
Query: 1053 AVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWY 1112
+VER VF REK AGMYSA+PYAFAQV+IEIPYIFV ++VYG+IVY+MIGFEW AKFFW
Sbjct: 1241 SVERTVFYREKAAGMYSAIPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWD 1300
Query: 1113 LFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYY 1172
FFMFF+ LYFTF+GMMTVA+TPN ++A+IV+ FY +WN+FSGF++PR RIP+WWRWYY
Sbjct: 1301 FFFMFFTFLYFTFFGMMTVAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYY 1360
Query: 1173 WANPVAWTMYGLVASQFGDVEDKM-ESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLF 1231
W P+AWT+YGLVASQFGD++D + + +TV+QF+RS F FKHDFLGVVA V+ AFAV+F
Sbjct: 1361 WGCPIAWTLYGLVASQFGDLQDPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVF 1420
Query: 1232 GVLFAVGIKRFNFQNR 1247
FA+GIK FNFQ R
Sbjct: 1421 AFTFALGIKAFNFQRR 1436
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1772 bits (4589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 868/1278 (67%), Positives = 1027/1278 (80%), Gaps = 46/1278 (3%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
M+LLLGPP SGKT+LLLALAGKLDS LK SGRVTYNGH MDEFVPQRT+AYI QHD+HIG
Sbjct: 182 MSLLLGPPGSGKTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIG 241
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVG+RYDMLTEL+RREKEA IKPDPDIDVYMKA + EGQE+ V+T
Sbjct: 242 EMTVRETLAFSARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVT 300
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLE+C DT+VGD M+RGISGGQKKRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 301 DYILKILGLEICADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTT 360
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS+RQ++HIL GTA+I+LLQPAPETYDLFDDI+LLS+ QIVYQGPRE +L+FFE+M
Sbjct: 361 YQIVNSLRQSVHILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAM 420
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKGVADFLQEVTSRKDQ QYW ++ PYR+++ +FSEAF+ F VG+ L ELR
Sbjct: 421 GFKCPERKGVADFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELR 480
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFD+ ++HPAALTT YG+ K EL KA SRE LLMKRNSFVYIFK+ QL + + MT
Sbjct: 481 VPFDRTRNHPAALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMT 540
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+F RTKMH+ SV DG I++GA F ++ +FNG ++++M+IAKLP+FYKQRDL FY +WA
Sbjct: 541 VFLRTKMHRRSVEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWA 600
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YALP W+LKIPISFLE AVW+ +TYYV+GFDPNI R F+ ++LL+L++QMAS LFR +AA
Sbjct: 601 YALPTWVLKIPISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAA 660
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GR M+VA +FGSF L+L GGF++SR++IKKWW+WGYW SP+MYAQNAI NEF GH
Sbjct: 661 LGREMVVADTFGSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGH 720
Query: 541 SWRKFT--SNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQF 598
SW K + SN+TLGVQVLK RG F A WYW+G+GA +G+++LFNI F L L +L+
Sbjct: 721 SWNKVVDPTQSNDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPL 780
Query: 599 EKPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVT 658
K +AV+S+E NR G +L T G++S ++S S + R
Sbjct: 781 GKGQAVVSEEELREKHVNRTGENVELLTLGTDS-------------QNSPSDANAGRGEI 827
Query: 659 VGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVL 718
GA +KRGMVLPF P S+TFD + YSVDMP+EMK +G+ ED+L+LL GVSGAFRPGVL
Sbjct: 828 TGA-DTRKRGMVLPFTPLSITFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVL 886
Query: 719 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFV 778
TALMGVSGAGKTTLMDVLAGRKTGGYI G+I+ISGYPKKQETF RI+GYCEQNDIHSP V
Sbjct: 887 TALMGVSGAGKTTLMDVLAGRKTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHV 946
Query: 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838
TVYESLLYSAWLRLP EVDSE +KMF+EE+MELVEL LR +LVGLPG +GLSTEQRKRL
Sbjct: 947 TVYESLLYSAWLRLPSEVDSEARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRL 1006
Query: 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 898
TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FD
Sbjct: 1007 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1066
Query: 899 E----------------------------GIPGVENIKDGYNPATWMLEVTAKSQELTLE 930
E GI GV IKDGYNPATWMLEVT +QE L
Sbjct: 1067 ELFLMKRGGEEIYVGPLGHNSCHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILG 1126
Query: 931 IDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWR 990
I+F ++Y+ S+LY+RNK LI ELS P PGS DL+FPT ++Q FF QC+ACLWKQH SYWR
Sbjct: 1127 INFAEVYRNSDLYQRNKTLISELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWR 1186
Query: 991 NPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQP 1050
NP YTA R FTTVIAL FGT+F ++G K+ + DLFN++GSMY AV F+G Q +VQP
Sbjct: 1187 NPSYTATRIFFTTVIALIFGTIFLNLGKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQP 1246
Query: 1051 VVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFF 1110
+V VER VF REK AGMYSA+PYAFAQV+IEIP+IF+ + VYG+IVY++IGF+W KFF
Sbjct: 1247 IVDVERTVFYREKAAGMYSALPYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFF 1306
Query: 1111 WYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRW 1170
WY+FFMFF+ +YFTFYGMM VAMTPN IAAIVS FY +WN+F+GF+IPR RIP+WWRW
Sbjct: 1307 WYMFFMFFTFMYFTFYGMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRW 1366
Query: 1171 YYWANPVAWTMYGLVASQFGDVEDK-MESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAV 1229
Y WA PVAWT+YGLVASQ+GD+ + +E GE V+ ++R YF F+HD+LG VA V FA
Sbjct: 1367 YSWACPVAWTLYGLVASQYGDITNSTLEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAA 1426
Query: 1230 LFGVLFAVGIKRFNFQNR 1247
LF +FA IK FNFQ R
Sbjct: 1427 LFAFVFAFSIKVFNFQRR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1728 bits (4476), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 854/1276 (66%), Positives = 1016/1276 (79%), Gaps = 49/1276 (3%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP +GKTTLLLALAGKLD+ LK +G VTYNGHGM EFVPQRT+AYISQHDVHIG
Sbjct: 186 MTLLLGPPGAGKTTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIG 245
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFS+RCQGVG+RY+MLTEL+RREKEA IKPDPD+DVYMKA A EGQE+ V+T
Sbjct: 246 EMTVRETLAFSSRCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VVT 304
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DT+VGD M+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 305 DYILKILGLDICADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTT 364
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIVNS+RQ++HIL GTA+I+LLQPAPETYDLFDDI+LLSD QIVYQGPRE VL+FFESM
Sbjct: 365 FQIVNSLRQSVHILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESM 424
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKGVADFLQEVTSRKDQQQYWV + PYRFV EFSEAF+SF VG KL +EL
Sbjct: 425 GFKCPERKGVADFLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELS 484
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFD+ ++HPAALTT YG+ K ELLKA I RE LLMKRNSFVYIFK+ QL +AL++MT
Sbjct: 485 TPFDRSRNHPAALTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMT 544
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+FFRTK+ ++ + D I+ GA F ++ +FNG ++++M+IAKLPVFYKQRDL FY WA
Sbjct: 545 VFFRTKLPRNGLEDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWA 604
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YALP WILKIPISF+E VW+ +TYYVIGFDPN+ R+F+ +LLL+L++Q+AS LFR +AA
Sbjct: 605 YALPTWILKIPISFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAA 664
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GR+M+VA +FG+F LVL GGF+++R+ IKK+W+WGYW SP+MYAQNAI NEF GH
Sbjct: 665 VGRDMVVADTFGAFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGH 724
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
SW K + +TLG + L++RG F WYW+G+GA IG+++LFN F L L +L+ K
Sbjct: 725 SWNKLVDATGQTLGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGK 784
Query: 601 PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVG 660
+ +S+E+ NR G +L+T GS ++ S+ + ++ +
Sbjct: 785 GQTTVSEEALQEKEANRTGANVELATRGSAAT----SDGGSVEIRKDGN----------- 829
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTA 720
+K+GMVLPF P S+TFD V YSVDMP+EMK +G+ EDKL+LL GVSGAFRPGVLTA
Sbjct: 830 ----RKKGMVLPFTPLSITFDNVKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTA 885
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780
LMGVSG GKTTLMDVLAGRKTGGYI G+I ISGYPK QETF RISGYCEQNDIHSP VTV
Sbjct: 886 LMGVSGRGKTTLMDVLAGRKTGGYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTV 945
Query: 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTI 840
YESLLYSAWLRLP EVD + +KMF++E+M+LVELN LR SLVGLPG +GLSTEQRKRLTI
Sbjct: 946 YESLLYSAWLRLPAEVDEKQRKMFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTI 1005
Query: 841 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE- 899
AVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFE+FDE
Sbjct: 1006 AVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1065
Query: 900 ---------------------------GIPGVENIKDGYNPATWMLEVTAKSQELTLEID 932
I GV+ IK+ YNPATWMLEVT SQE L ++
Sbjct: 1066 FLMKRGGEEIYVGPLGRQSSHLIKYFESIDGVKKIKERYNPATWMLEVTTISQEEILGLN 1125
Query: 933 FTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNP 992
F ++Y+ S+LY+RNK LI+ELS P PGSKDL+F T ++QSF MQC+ACLWKQH SYWRNP
Sbjct: 1126 FAEVYRNSDLYKRNKDLIKELSTPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSYWRNP 1185
Query: 993 PYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVV 1052
YTA R FT VIAL FGT+FWD+G K + DL NAMGSMY AV F+G Q +VQP+V
Sbjct: 1186 SYTATRLFFTVVIALIFGTIFWDLGKKRSTSLDLINAMGSMYAAVLFIGIQNAQTVQPIV 1245
Query: 1053 AVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWY 1112
VER VF REK AGMYSA+PYA+AQV+IE+P+I V + +YG++VY+MIGF+W AAKF WY
Sbjct: 1246 DVERTVFYREKAAGMYSALPYAYAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWY 1305
Query: 1113 LFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYY 1172
+FFMFF+ LYFT+YGMM VAMTPN IAAIV+ FY +WN+F+GF+IPR RIP+WWRWYY
Sbjct: 1306 MFFMFFTFLYFTYYGMMAVAMTPNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYY 1365
Query: 1173 WANPVAWTMYGLVASQFGDVEDKM-ESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLF 1231
WA PVAWT+YGLV SQFG+ D M + ETVK F+R + F+HDFL VV V+V F VLF
Sbjct: 1366 WACPVAWTLYGLVVSQFGEYTDTMSDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLF 1425
Query: 1232 GVLFAVGIKRFNFQNR 1247
+FA IK NFQ R
Sbjct: 1426 ASIFAFSIKTLNFQRR 1441
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1247 | ||||||
| 255572799 | 1443 | ATP-binding cassette transporter, putati | 0.986 | 0.852 | 0.729 | 0.0 | |
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.978 | 0.853 | 0.738 | 0.0 | |
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.996 | 0.395 | 0.750 | 0.0 | |
| 255546581 | 1449 | ATP-binding cassette transporter, putati | 0.996 | 0.857 | 0.715 | 0.0 | |
| 147816688 | 1471 | hypothetical protein VITISV_022715 [Viti | 0.996 | 0.845 | 0.738 | 0.0 | |
| 297743360 | 1451 | unnamed protein product [Vitis vinifera] | 0.995 | 0.855 | 0.747 | 0.0 | |
| 359482652 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.975 | 0.853 | 0.745 | 0.0 | |
| 256538311 | 1451 | pleiotropic drug resistance protein [Cuc | 0.996 | 0.856 | 0.714 | 0.0 | |
| 449460732 | 1451 | PREDICTED: pleiotropic drug resistance p | 0.996 | 0.856 | 0.714 | 0.0 | |
| 449483991 | 1451 | PREDICTED: LOW QUALITY PROTEIN: pleiotro | 0.996 | 0.856 | 0.713 | 0.0 |
| >gi|255572799|ref|XP_002527332.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223533332|gb|EEF35084.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1966 bits (5094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 932/1278 (72%), Positives = 1065/1278 (83%), Gaps = 48/1278 (3%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAGKLD LKFSG VTYNGHGM+EF+PQ TAAYISQHD+HIG
Sbjct: 183 MTLLLGPPSSGKTTLLLALAGKLDPNLKFSGNVTYNGHGMNEFIPQSTAAYISQHDLHIG 242
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETL+FS RCQGVG+R DML EL+RREK A IKPDPDIDV+MKA ATEGQE NV+T
Sbjct: 243 EMTVRETLSFSVRCQGVGTRNDMLVELSRREKAANIKPDPDIDVFMKAVATEGQETNVVT 302
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLEVC DTLVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 303 DYVLKILGLEVCADTLVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 362
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS++Q IHIL+GTAVISLLQPAPETYDLFDDIILLSD QIVYQGPRE VL+FFE M
Sbjct: 363 YQIVNSLKQTIHILDGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREHVLEFFEYM 422
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKGVADFLQEVTS+ DQ+QYWV K+ PY FVT QEFSEAFQS+ VGQ + EL
Sbjct: 423 GFKCPERKGVADFLQEVTSKNDQKQYWVQKDQPYSFVTVQEFSEAFQSYDVGQIIGQELS 482
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK KSHPAAL + YGV K ELLKA +RE LLMKRNSFVYIFKLTQL MA++SMT
Sbjct: 483 TPFDKSKSHPAALAARKYGVDKMELLKACFAREYLLMKRNSFVYIFKLTQLVVMAIISMT 542
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LF RT+MH++ ++D G+Y+GA FF+++ MFNGMS++SMTIAKLPVFYKQRDL+FY WA
Sbjct: 543 LFLRTEMHREDLTDAGVYLGALFFSLIAIMFNGMSELSMTIAKLPVFYKQRDLQFYPPWA 602
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YALP WILKIPI+F EV VWVF+TYYVIGFDPN+ RLFKQ+ LLL+VNQMAS LFRFIAA
Sbjct: 603 YALPTWILKIPITFFEVGVWVFITYYVIGFDPNVERLFKQYFLLLIVNQMASGLFRFIAA 662
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GRNMIVA +FGSF LL +FA GG VLSRDDIKKWW WGYW SPMMY QNA+VANEF G
Sbjct: 663 VGRNMIVANTFGSFALLTVFALGGIVLSRDDIKKWWTWGYWISPMMYGQNALVANEFLGE 722
Query: 541 SWRKFTSNSNET--LGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQF 598
SW +NS T LGVQ +KSRGFFPHAYWYW+G+GA GF +LFN+ FTL+LT LN +
Sbjct: 723 SWNHVPANSTSTDSLGVQFIKSRGFFPHAYWYWIGIGALTGFTILFNLCFTLALTHLNPY 782
Query: 599 EKPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVT 658
EKP AVISDE E +D R GG QLS +G SSH+T +E+ + ++ +T
Sbjct: 783 EKPHAVISDEPERSD---RTGGAIQLSQNG--SSHRTITEN-GVGIR-----------MT 825
Query: 659 VGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVL 718
A Q KK+GMVLPFEPHS+TF++V YSVDMP+EMK QGI +DKL+LL GVSGAF+PGVL
Sbjct: 826 DEANQNKKKGMVLPFEPHSITFNDVMYSVDMPQEMKSQGIADDKLVLLKGVSGAFKPGVL 885
Query: 719 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFV 778
TALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQ+TF RISGYCEQNDIHSP V
Sbjct: 886 TALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQDTFARISGYCEQNDIHSPHV 945
Query: 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838
TVYESL+YSAWLRL PEVD ET+KMF+ E+MELVELNPLRQ+LVGLPG +GLSTEQRKRL
Sbjct: 946 TVYESLIYSAWLRLAPEVDPETRKMFVNEVMELVELNPLRQALVGLPGVNGLSTEQRKRL 1005
Query: 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 898
TI+VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID+FE+FD
Sbjct: 1006 TISVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDLFEAFD 1065
Query: 899 ----------------------------EGIPGVENIKDGYNPATWMLEVTAKSQELTLE 930
E I G +KDGYNPATWMLEVT+ +QEL+L
Sbjct: 1066 ELFLMKRGGEEIYVGPLGRHSCHMIDYFEVIEGASKVKDGYNPATWMLEVTSSAQELSLG 1125
Query: 931 IDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWR 990
+DF IYK SELYRRNKA+I+ELS PGSKDLYFPT Y+QSF QC+ACLWKQ SYWR
Sbjct: 1126 VDFATIYKNSELYRRNKAIIKELSTSVPGSKDLYFPTQYSQSFLTQCIACLWKQRLSYWR 1185
Query: 991 NPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQP 1050
NPPYTAVRFLFTT IAL FGTMFWD+G+K + QD+FN+ GSMY AV FLG Q +SVQP
Sbjct: 1186 NPPYTAVRFLFTTFIALMFGTMFWDLGSKTRTQQDIFNSAGSMYAAVVFLGTQNAASVQP 1245
Query: 1051 VVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFF 1110
VVA+ER VF RE+ AGMYSA+PYA+AQV++EIPYIF + VYG++ Y+MIGFEW AAKFF
Sbjct: 1246 VVAIERTVFYRERAAGMYSALPYAYAQVLVEIPYIFAQAVVYGLLTYSMIGFEWTAAKFF 1305
Query: 1111 WYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRW 1170
WY+FFM+F+L+YFT+YGMM VA+TPNHHIA++VS FYG+WN+FSGF++PRTR+P+WWRW
Sbjct: 1306 WYIFFMYFTLMYFTYYGMMAVAVTPNHHIASVVSSAFYGIWNLFSGFIVPRTRMPVWWRW 1365
Query: 1171 YYWANPVAWTMYGLVASQFGDVEDKMESG-ETVKQFVRSYFDFKHDFLGVVAVVVAAFAV 1229
YYW PV+WT+YGL+ SQF D++D E G +TV+ FVR Y+ +HDFLGVVA V+ V
Sbjct: 1366 YYWVCPVSWTLYGLIGSQFSDIKDAFEGGSQTVEDFVREYYGIRHDFLGVVAAVIVGTTV 1425
Query: 1230 LFGVLFAVGIKRFNFQNR 1247
LF +FAV IK FNFQ R
Sbjct: 1426 LFAFIFAVSIKSFNFQRR 1443
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1957 bits (5069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 942/1275 (73%), Positives = 1067/1275 (83%), Gaps = 55/1275 (4%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAGKLD KLKFSGRVTYNGH M+EFVPQRTAAYISQHD HIG
Sbjct: 182 MTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTHIG 241
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAF+ARCQGVG RY+M++EL RREK + IKPDPDIDV+MKA ATEGQEANV+T
Sbjct: 242 EMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANVVT 301
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLEVC D +VG+EM+RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 302 DYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSSTT 361
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNSI+Q IHILNGTAVISLLQP PETY+LFDDIILLSD QIVYQGPRE VL+FFE M
Sbjct: 362 YQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFEYM 421
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKGVADFLQEVTSRKDQ QYW K+ PY FVT +EF+EAFQSF VG++L EL
Sbjct: 422 GFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAELS 481
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK KSHPAALTTK YGVGK ELLKA SRE+LLMKRNSFVYIFKLTQL+ MA+V+MT
Sbjct: 482 TPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVAMT 541
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LF RT+MH+DSV++GGIYVGA FF+V+ MFNG+S+IS+TIAKLPVFYKQR L FY WA
Sbjct: 542 LFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPPWA 601
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
++LP WI KIPI+ ++VA+WVFLTYYVIGFDPN+GR FKQ+LLL LV+QMAS LFRFIAA
Sbjct: 602 FSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFIAA 661
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
AGRNMIVA +FGSF LL LFA GGF+LSRD+IKKWW+WGYW SP+MY QNAIV NEF G+
Sbjct: 662 AGRNMIVANTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFLGN 721
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
SW K ++ ETLG+QVL+SRGFF HAYWYW+G+GA +GF LL+N FTL+LTFL +K
Sbjct: 722 SWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPLQK 781
Query: 601 PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVG 660
P+AVIS++S SN G + G QLS+ + E+ V
Sbjct: 782 PQAVISEDSASNTSG-KTGEVIQLSS--------------------------VRTELIVE 814
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTA 720
K++GMVLPFEPHS+TF+++ YSVDMP+EMK QG ED+L LL GVSGAFRPGVLTA
Sbjct: 815 ENHQKQKGMVLPFEPHSITFNDIRYSVDMPQEMKRQGATEDRLELLRGVSGAFRPGVLTA 874
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780
LMGVSGAGKTTLMDVLAGRKTGGYI G+I ISG+PKKQETF RISGYCEQNDIHSP VTV
Sbjct: 875 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPHVTV 934
Query: 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTI 840
YESLLYS+WLRLPPEV+SET+KMFIEE+MELVEL PLRQ+LVGLPG SGLSTEQRKRLTI
Sbjct: 935 YESLLYSSWLRLPPEVNSETRKMFIEEVMELVELTPLRQALVGLPGVSGLSTEQRKRLTI 994
Query: 841 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD-- 898
AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FD
Sbjct: 995 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1054
Query: 899 --------------------------EGIPGVENIKDGYNPATWMLEVTAKSQELTLEID 932
E I GV +IKDGYNPATWMLEV++ +QE+ L +D
Sbjct: 1055 LLMKRGGQEIYVGPLGRHSCQLIKYFEAIEGVPDIKDGYNPATWMLEVSSSAQEMVLGLD 1114
Query: 933 FTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNP 992
F IYK SELYRRNKALIEELS P GS DLYFPT Y+QSFF QC+ACLWKQHWSYWRNP
Sbjct: 1115 FAAIYKNSELYRRNKALIEELSTPPLGSNDLYFPTQYSQSFFTQCMACLWKQHWSYWRNP 1174
Query: 993 PYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVV 1052
PYTAVRFLFTTVIAL FGTMFWD+G+K + QDLFNAMGSMY A+ FLG Q SSVQPVV
Sbjct: 1175 PYTAVRFLFTTVIALMFGTMFWDLGSKTTKRQDLFNAMGSMYAAIVFLGIQNASSVQPVV 1234
Query: 1053 AVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWY 1112
AVER VF RE+ AGMYS +PYAFAQV+IE+PYIF+ ++VYG+IVYAMIGFEW AAKFFWY
Sbjct: 1235 AVERTVFYRERAAGMYSPLPYAFAQVVIELPYIFLQAAVYGLIVYAMIGFEWSAAKFFWY 1294
Query: 1113 LFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYY 1172
LFFM+F+LL++T+YGMM VA+TPN +A+IVS FY +WN+FSGF+IPR RIP+WWRWY
Sbjct: 1295 LFFMYFTLLFYTYYGMMAVAVTPNQQVASIVSSAFYSIWNLFSGFIIPRPRIPVWWRWYA 1354
Query: 1173 WANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLFG 1232
W PVA+T+YGLV+SQFGD++ +ESGETV+ FVRSYFDFKH+ LG VA V FA LF
Sbjct: 1355 WTCPVAYTLYGLVSSQFGDIKHTLESGETVEDFVRSYFDFKHELLGAVAAAVFGFATLFA 1414
Query: 1233 VLFAVGIKRFNFQNR 1247
FA IK FNFQ R
Sbjct: 1415 FTFAFSIKFFNFQRR 1429
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1957 bits (5069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 960/1279 (75%), Positives = 1085/1279 (84%), Gaps = 36/1279 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLAL+GKLDS LK +G+VTYNGHGM+EFVPQRTA YISQHD HIG
Sbjct: 1868 MTLLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIG 1927
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVG RYDML EL+RREK A IKPDPDIDV+MKA ATEGQ+ NV+T
Sbjct: 1928 EMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAVATEGQKENVIT 1987
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLEVC DTLVGD+M+RGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 1988 DYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTT 2047
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS+RQ IHILNGTA+ISLLQPAPETYDLFDDIILLSD+QIVYQGPRE VLDFFESM
Sbjct: 2048 YQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESM 2107
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GF+CPERKGVADFLQEVTSRKDQQQYW K+ PY FVT +EF+EAFQSF +G+KL EL
Sbjct: 2108 GFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHELA 2167
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK KSHPAAL T+ YGV KKELL A ISRE LLMKRNSFVYIFKLTQL MA +SMT
Sbjct: 2168 TPFDKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISMT 2227
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+F RT+MHK+S DG IY GA FF V+M MFNGMS+++MTIAKLPVFYKQR L FY AWA
Sbjct: 2228 IFLRTEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWA 2287
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YALP+WILKIPI+F+EVAVWVF++YYVIGFDPN+GRLFKQ+LLL+LVNQMASALFRFIAA
Sbjct: 2288 YALPSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAA 2347
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
AGRNMIVA +FGSF LL+LFA GGFVLSR+++KKWW+WGYW SP+MYAQNAIV NEF G
Sbjct: 2348 AGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGK 2407
Query: 541 SWRKFTS-NSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFE 599
SW K +S +S E+LGV VLKSRGFF AYWYW+G GA +GF+L+FN +T++LT+LN FE
Sbjct: 2408 SWSKNSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFE 2467
Query: 600 KPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCS--ESEDITVKDSFSQLLSQREV 657
KP+AVI++ESE+ ++ GG +LS+H S +T S ++I S + + E
Sbjct: 2468 KPQAVITEESEN----SKTGGKIELSSHRRGSIDQTASTERRDEIGRSISSTSSSVRAEA 2523
Query: 658 TVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGV 717
A + K+GMVLPF+P S+TFD++ YSVDMP+EMK QG+LED+L LL GVSGAFRPGV
Sbjct: 2524 IAEARRNNKKGMVLPFQPLSITFDDIRYSVDMPEEMKSQGVLEDRLELLKGVSGAFRPGV 2583
Query: 718 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPF 777
LTALMGVSGAGKTTLMDVLAGRKTGGYI GNI ISGYPKKQETF RISGYCEQNDIHSP
Sbjct: 2584 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFARISGYCEQNDIHSPH 2643
Query: 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837
VT++ESLLYSAWLRLP +VDS+T+KMFIEE+MELVEL PL+ SLVGLPG +GLSTEQRKR
Sbjct: 2644 VTIHESLLYSAWLRLPADVDSKTRKMFIEEVMELVELTPLKDSLVGLPGVNGLSTEQRKR 2703
Query: 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESF 897
LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+F
Sbjct: 2704 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 2763
Query: 898 DE----------------------------GIPGVENIKDGYNPATWMLEVTAKSQELTL 929
DE GI GV IKDGYNPATWMLEVT+ +QE L
Sbjct: 2764 DELLLLKRGGQEIYVGPLGRHSSHLIKYFQGIEGVSKIKDGYNPATWMLEVTSSAQEFLL 2823
Query: 930 EIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYW 989
+DFT+IYK S+LYRRNK LI+ELS+PAPGSKDLYFPT Y+QSFF QC+ACLWKQ SYW
Sbjct: 2824 GVDFTEIYKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYW 2883
Query: 990 RNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQ 1049
RNPPYTAVRF FTT IAL FGTMFWD+GTK K+ QDL NAMGSMY AV FLG Q SSVQ
Sbjct: 2884 RNPPYTAVRFFFTTFIALIFGTMFWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQNSSSVQ 2943
Query: 1050 PVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKF 1109
PVVAVER VF RE+ AGMYSAMPYAFAQ ++EIPY+F + VYG+IVYAMIGFEW AAKF
Sbjct: 2944 PVVAVERTVFYRERAAGMYSAMPYAFAQALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKF 3003
Query: 1110 FWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWR 1169
FWYLFFMFF+LLYFTFYGMM VA TPN HIAAIV+ FYGLWN+FSGF++PRTRIP+WWR
Sbjct: 3004 FWYLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWR 3063
Query: 1170 WYYWANPVAWTMYGLVASQFGDVEDKME-SGETVKQFVRSYFDFKHDFLGVVAVVVAAFA 1228
WYYWA PVAWT+YGLV SQFGD++D+ E +G+TV+Q++ YF F+HDFLGVVA V+ F
Sbjct: 3064 WYYWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFT 3123
Query: 1229 VLFGVLFAVGIKRFNFQNR 1247
VLF +FA IK FNFQ R
Sbjct: 3124 VLFLFIFAFAIKAFNFQRR 3142
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546581|ref|XP_002514350.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223546806|gb|EEF48304.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1944 bits (5036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 912/1275 (71%), Positives = 1055/1275 (82%), Gaps = 32/1275 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAGKL LKFSGRVTYNGHGM+EFVPQRT+AYISQ+D+HIG
Sbjct: 179 MTLLLGPPSSGKTTLLLALAGKLTKDLKFSGRVTYNGHGMEEFVPQRTSAYISQYDIHIG 238
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVGSRY+ML ELARREKEA IKPDPDID+YMKAAA EGQEANV+T
Sbjct: 239 EMTVRETLAFSARCQGVGSRYEMLMELARREKEANIKPDPDIDIYMKAAALEGQEANVVT 298
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLE+C DTLVGDEM RGISGGQKKRVTTGEM+VGPA ALFMDEISTGLDS+TT
Sbjct: 299 DYILKILGLELCADTLVGDEMARGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSTTT 358
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIVNS+RQ++HIL+GTA+I+LLQPAPET++LFDDIILLSD QIVYQGPRE VLDFFE M
Sbjct: 359 FQIVNSLRQSVHILSGTALIALLQPAPETFELFDDIILLSDGQIVYQGPRENVLDFFEYM 418
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKGVADFLQEVTSRKDQ+QYW HK+ PY FV+ EFSEAFQSF +G+KL DEL
Sbjct: 419 GFKCPERKGVADFLQEVTSRKDQEQYWAHKDQPYLFVSVNEFSEAFQSFHIGRKLGDELA 478
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK K+HP +LTTK YGV KKEL KA ISRE LLMKRNSFVYIFK+TQL + ++MT
Sbjct: 479 TPFDKSKAHPDSLTTKKYGVSKKELFKACISREYLLMKRNSFVYIFKMTQLIILGFITMT 538
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LF RT+MH+++ +DGG+Y+GA FF V MFNG S+++MTI KLPVFYKQRDL FY +WA
Sbjct: 539 LFLRTEMHRNTETDGGVYLGALFFTVTTIMFNGFSELAMTILKLPVFYKQRDLLFYPSWA 598
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YALP WILKIPI+F+EVAVWV +TYYVIGFDPNI R FKQ+L+LL+ NQMASALFR AA
Sbjct: 599 YALPTWILKIPITFVEVAVWVVMTYYVIGFDPNIQRFFKQYLILLITNQMASALFRLTAA 658
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GRN+IVA + G+F +L GGFV+SRD++KKWW+WGYW SPMMY QNAI NEF G
Sbjct: 659 LGRNIIVANTVGAFAMLTALVLGGFVISRDNVKKWWIWGYWFSPMMYVQNAISVNEFLGS 718
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
SW F NS + LGV +LKSRG FP AYWYW+G GA G++ LFN FTL+L +L+ F K
Sbjct: 719 SWNHFPPNSTKPLGVTLLKSRGLFPEAYWYWIGFGALTGYIFLFNFLFTLALKYLDPFGK 778
Query: 601 PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVG 660
P+A+IS E+ S R G +LS+ N + + + + S +++ S
Sbjct: 779 PQAIISKEAYSEKTAVRTGEFIELSSKEKNFQERGSASHRVASSRTSSARVSSLS----N 834
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTA 720
A + KRGMVLPF+P S+TF +V Y+V MP+EMK QGI ED+L LL GVSGAFRPGVLTA
Sbjct: 835 AFENSKRGMVLPFQPLSITFADVRYAVQMPQEMKTQGITEDRLELLKGVSGAFRPGVLTA 894
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780
LMGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETF RISGYCEQ DIHSP VTV
Sbjct: 895 LMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQTDIHSPHVTV 954
Query: 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTI 840
YESLLYSAWLRLPPEVDS+T+ MF+EE+MELVEL LR++LVGLPG +GLS EQRKRLT+
Sbjct: 955 YESLLYSAWLRLPPEVDSDTRNMFVEEVMELVELTSLREALVGLPGVNGLSVEQRKRLTV 1014
Query: 841 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE- 899
AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF++FDE
Sbjct: 1015 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1074
Query: 900 ---------------------------GIPGVENIKDGYNPATWMLEVTAKSQELTLEID 932
I G+ IKDGYNPATWMLEVT +QE+ L +D
Sbjct: 1075 LLLKRGGEEIYVGPVGRHACHLIKYFEDIEGIPKIKDGYNPATWMLEVTTTAQEVALGVD 1134
Query: 933 FTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNP 992
F+DIYK SELYR+NKALI+ELSRP PGSKDLYFPT Y++SF QC+ACLWKQHWSYWRNP
Sbjct: 1135 FSDIYKNSELYRKNKALIKELSRPLPGSKDLYFPTQYSKSFTTQCMACLWKQHWSYWRNP 1194
Query: 993 PYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVV 1052
PYTAVR +F T IAL FGT+FW +GTK R QD+FNAMGSMY AV FLG ++VQPVV
Sbjct: 1195 PYTAVRLVFATFIALMFGTIFWKLGTKRSRRQDIFNAMGSMYAAVLFLGFHNSTAVQPVV 1254
Query: 1053 AVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWY 1112
A+ER VF RE+ AGMYSA+ YAF QVMIE+PYI + + +YG+IVYAM+GFEW +KFFWY
Sbjct: 1255 AIERTVFYRERAAGMYSALAYAFGQVMIEVPYILIQTIIYGVIVYAMVGFEWTISKFFWY 1314
Query: 1113 LFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYY 1172
LFFM+F+LLYFTFYGMM VA+TPNH+IAAIVS FY +WN+FSGF++PRTRIP+WWRWYY
Sbjct: 1315 LFFMYFTLLYFTFYGMMNVAITPNHNIAAIVSSAFYAIWNIFSGFIVPRTRIPIWWRWYY 1374
Query: 1173 WANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLFG 1232
WA P+AWT+YGLVASQFGD+++++++GETV+ F+RSYF F+HDF+G+VAVV+ VLFG
Sbjct: 1375 WACPIAWTLYGLVASQFGDIKEELDTGETVEHFLRSYFGFQHDFVGIVAVVLVGICVLFG 1434
Query: 1233 VLFAVGIKRFNFQNR 1247
LFA I+ FNFQ R
Sbjct: 1435 FLFAFSIRTFNFQRR 1449
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816688|emb|CAN77690.1| hypothetical protein VITISV_022715 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1944 bits (5036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 957/1296 (73%), Positives = 1082/1296 (83%), Gaps = 53/1296 (4%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLAL+GKLDS LK +G+VTYNGHGM+EFVPQRTA YISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIG 239
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMK------------- 107
EMTVRETLAFSARCQGVG RYDML EL+RREK A IKPDPDIDV+MK
Sbjct: 240 EMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKEQNLLSLEFLKVL 299
Query: 108 ----AAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPA 163
A ATEGQ+ NV+TDY LK+LGLEVC DTLVGD+M+RGISGGQ+KRVTTGEM+VGP+
Sbjct: 300 IGLMAVATEGQKENVITDYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPS 359
Query: 164 LALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQ 223
ALFMDEISTGLDSSTT+QIVNS+RQ IHILNGTA+ISLLQPAPETYDLFDDIILLSD+Q
Sbjct: 360 KALFMDEISTGLDSSTTYQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQ 419
Query: 224 IVYQGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFS 283
IVYQGPRE VLDFFESMGF+CPERKGVADFLQEVTSRKDQQQYW K+ PY FVT +EF+
Sbjct: 420 IVYQGPREDVLDFFESMGFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFA 479
Query: 284 EAFQSFTVGQKLADELRTPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFV 343
EAFQSF +G+KL EL TPFDK KSHPAAL T+ YGV KKELL A ISRE LLMKRNSFV
Sbjct: 480 EAFQSFHIGRKLGHELATPFDKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFV 539
Query: 344 YIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAK 403
YIFKLTQL MA +SMT+F RT+MHK+S DG IY GA FF V+M MFNGMS+++MTIAK
Sbjct: 540 YIFKLTQLIIMAAISMTIFLRTEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAK 599
Query: 404 LPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLL 463
LPVFYKQR L FY AWAYALP+WILKIPI+F+EVAVWVF++YYVIGFDPN+GRLFKQ+LL
Sbjct: 600 LPVFYKQRGLLFYPAWAYALPSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLL 659
Query: 464 LLLVNQMASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCS 523
L+LVNQMASALFRFIAAAGRNMIVA +FGSF LL+LFA GGFVLSR+++KKWW+WGYW S
Sbjct: 660 LVLVNQMASALFRFIAAAGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSS 719
Query: 524 PMMYAQNAIVANEFFGHSWRKFTS-NSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVL 582
P+MYAQNAIV NEF G SW K +S +S E+LGV VLKSRGFF AYWYW+G GA +GF+L
Sbjct: 720 PLMYAQNAIVVNEFLGKSWSKNSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFIL 779
Query: 583 LFNIGFTLSLTFLNQFEKPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCS--ESE 640
+FN +T++LT+LN FEKP+AVI++ESE+ ++ GG +LS+H S +T S E
Sbjct: 780 VFNFCYTVALTYLNAFEKPQAVITEESEN----SKTGGKIELSSHRRGSIDQTASTERRE 835
Query: 641 DITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILE 700
+I S + + E A + K+GMVLPF+P S+TF+++ YSVDMP+EMK QG+LE
Sbjct: 836 EIGRSISSTSSSVRAEAIAEARRNNKKGMVLPFQPLSITFEDIRYSVDMPEEMKSQGVLE 895
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET 760
D+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GNI ISGYPKKQET
Sbjct: 896 DRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQET 955
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
F RI GYCEQNDIHSP VT++ESLLYSAWLRLP +VDS+T+KMFIEE+MELVEL PL+ S
Sbjct: 956 FARIXGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIEEVMELVELTPLKDS 1015
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
LVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR
Sbjct: 1016 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1075
Query: 881 TVVCTIHQPSIDIFESFD----------------------------EGIPGVENIKDGYN 912
TVVCTIHQPSIDIFE+FD EGI GV IK GYN
Sbjct: 1076 TVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRHSSHLIKYFEGIEGVSKIKGGYN 1135
Query: 913 PATWMLEVTAKSQELTLEIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQS 972
PATWMLEVT +QE L +DFT+IYK S+LYRRNK LI+ELS+PAPGSKDLYFPT Y+QS
Sbjct: 1136 PATWMLEVTTSAQEFLLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQS 1195
Query: 973 FFMQCVACLWKQHWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGS 1032
FF QC+ACLWKQ SYWRNPPYTAVRF FTT IAL FGTMFWD+GTK K+ QDL NAMGS
Sbjct: 1196 FFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKRKKQQDLSNAMGS 1255
Query: 1033 MYTAVFFLGAQYCSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVY 1092
MY AV FLG Q SSVQPVVAVER VF RE+ AGMYSAMPYAFAQ ++EIPY+F + VY
Sbjct: 1256 MYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGMYSAMPYAFAQALVEIPYVFAQAVVY 1315
Query: 1093 GIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWN 1152
G+IVYAMIGFEW AAKFFWYLFFMFF+LLYFTFYGMM VA TPN HIAAIV+ FYGLWN
Sbjct: 1316 GVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWN 1375
Query: 1153 VFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVEDKME-SGETVKQFVRSYFD 1211
+FSGF++PRTRIP+WWRWYYWA PVAWT+YGLV SQFGD++D+ E +G+TV+Q++ YF
Sbjct: 1376 LFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFG 1435
Query: 1212 FKHDFLGVVAVVVAAFAVLFGVLFAVGIKRFNFQNR 1247
F+HDFLGVVA V+ F +LF +FA IK FNFQ R
Sbjct: 1436 FEHDFLGVVAAVIVGFTILFLFIFAFAIKAFNFQRR 1471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743360|emb|CBI36227.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1944 bits (5035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 954/1277 (74%), Positives = 1081/1277 (84%), Gaps = 35/1277 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLAL+GKLDS LK +G+VTYNGHGM+EFVPQRTA YISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIG 239
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVG RYDML EL+RREK A IKPDPDIDV+MKAAATEGQ+ NV+T
Sbjct: 240 EMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAAATEGQKENVIT 299
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLEVC DTLVGD+M+RGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 300 DYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTT 359
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS+RQ IHILNGTA+ISLLQPAPETYDLFDDIILLSD+QIVYQGPRE VLDFFESM
Sbjct: 360 YQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESM 419
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GF+CPERKGVADFLQEVTSRKDQQQYW K+ PY FVT ++F+EAFQSF G+K+ DEL
Sbjct: 420 GFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKQFAEAFQSFHSGRKVGDELA 479
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK KSHPAAL T+ YGV KKELL A ISRE LMKRNSFVYI +LTQL MA +SMT
Sbjct: 480 TPFDKTKSHPAALKTEKYGVRKKELLDACISREYWLMKRNSFVYILQLTQLIIMAAISMT 539
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+F RT+MHK+S DG IY+GA FF V+M MFNGMS+++MTIAKLPVFYKQR L FY AWA
Sbjct: 540 IFLRTEMHKNSTDDGSIYMGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWA 599
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YAL +WILKIPI+F+EVAVWVF++YYVIGFDPN+GRLFKQ+LLL+LVNQMASALFRFIAA
Sbjct: 600 YALSSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAA 659
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
AGRNMIVA +FGSF LL+LFA GGFVLSR+++KKWW+WGYW SP+MYAQNAIV NEF G
Sbjct: 660 AGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGK 719
Query: 541 SWRKFTS-NSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFE 599
SW K +S NS E+LGV VLKSRGFF AYWYW+G GA +GF+L+FN +T++LT+LN FE
Sbjct: 720 SWSKNSSTNSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFE 779
Query: 600 KPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTV 659
KP+AVI++ESE+ ++ GG +LS+H S +T S +++I S + + E
Sbjct: 780 KPQAVITEESEN----SKTGGKIELSSHRRGSIDQTAS-TDEIGRSISSTSSSVRAEAIA 834
Query: 660 GAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLT 719
A + KRGMVLPF+P S+TFD++ YSVDMP+EMK QG+LED+L LL GVSGAFRPGVLT
Sbjct: 835 EARRNTKRGMVLPFQPLSITFDDIRYSVDMPEEMKSQGVLEDRLKLLKGVSGAFRPGVLT 894
Query: 720 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVT 779
ALMGVSGAGKTTLMDVLAGRKTGGYI GNI ISGYPKKQETFTRISGYCEQNDIHSP VT
Sbjct: 895 ALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFTRISGYCEQNDIHSPHVT 954
Query: 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLT 839
++ESLLYSAWLRLP +VDS+T+KMFIE++MELVEL PL+ SLVGLPG +GLSTEQRKRLT
Sbjct: 955 IHESLLYSAWLRLPADVDSKTRKMFIEKVMELVELTPLKDSLVGLPGVNGLSTEQRKRLT 1014
Query: 840 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD- 898
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FD
Sbjct: 1015 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1074
Query: 899 ---------------------------EGIPGVENIKDGYNPATWMLEVTAKSQELTLEI 931
EGI GV IK GYNPATWMLEVT +QE L +
Sbjct: 1075 LLLLKRGGQEIYVGLLGRHSSCLIKYFEGIEGVSKIKGGYNPATWMLEVTTSAQEFLLGV 1134
Query: 932 DFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRN 991
DFT+IYK S LYRRNK LI+ELS+PAPGSKDLYFPT Y+QSFF QC+ACLWKQ SYWRN
Sbjct: 1135 DFTEIYKNSNLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRN 1194
Query: 992 PPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPV 1051
PPYTAVRF FTT IAL FGTMFWD+GTK + QDL NAMGSMY AV FLG Q SSVQPV
Sbjct: 1195 PPYTAVRFFFTTFIALIFGTMFWDLGTKRTKQQDLSNAMGSMYAAVLFLGVQNSSSVQPV 1254
Query: 1052 VAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFW 1111
VAVER VF RE+ AG+YSAMPYAFA ++EIPY+F + VYG+IVYAMIGFEW AAKFFW
Sbjct: 1255 VAVERTVFYRERAAGIYSAMPYAFAHALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFW 1314
Query: 1112 YLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWY 1171
YLFFMFF+LLYFTFYGMM VA TPN HIAAIV+ FYGLWN+FSGF++PRTRIP+WWRWY
Sbjct: 1315 YLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWY 1374
Query: 1172 YWANPVAWTMYGLVASQFGDVEDKME-SGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVL 1230
YWA PVAWT+YGLV SQFGD++D+ E +G+TV+Q++ YF F+HDFLGVVA V+ F VL
Sbjct: 1375 YWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVL 1434
Query: 1231 FGVLFAVGIKRFNFQNR 1247
F +FA IK FNFQ R
Sbjct: 1435 FLFIFAFAIKAFNFQRR 1451
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482652|ref|XP_003632801.1| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1938 bits (5021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 952/1277 (74%), Positives = 1072/1277 (83%), Gaps = 60/1277 (4%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLAL+GKLDS LK +G+VTYNGHGM+EFVPQRTA YISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIG 239
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETLAFSARCQGVG RYDML EL+RREK A IKPDPDIDV+MKAAATEGQ+ NV+T
Sbjct: 240 EMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAAATEGQKENVIT 299
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLEVC DTLVGD+M+RGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 300 DYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTT 359
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS+RQ IHILNGTA+ISLLQPAPETYDLFDDIILLSD+QIVYQGPRE VLDFFESM
Sbjct: 360 YQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESM 419
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GF+CPERKGVADFLQEVTSRKDQQQYW K+ PY FVT ++F+EAFQSF G+K+ DEL
Sbjct: 420 GFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKQFAEAFQSFHSGRKVGDELA 479
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK KSHPAAL T+ YGV KKELL A ISRE LMKRNSFVYI +LTQL MA +SMT
Sbjct: 480 TPFDKTKSHPAALKTEKYGVRKKELLDACISREYWLMKRNSFVYILQLTQLIIMAAISMT 539
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+F RT+MHK+S DG IY+GA FF V+M MFNGMS+++MTIAKLPVFYKQR L FY AWA
Sbjct: 540 IFLRTEMHKNSTDDGSIYMGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWA 599
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
YAL +WILKIPI+F+EVAVWVF++YYVIGFDPN+GRLFKQ+LLL+LVNQMASALFRFIAA
Sbjct: 600 YALSSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAA 659
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
AGRNMIVA +FGSF LL+LFA GGFVLSR+++KKWW+WGYW SP+MYAQNAIV NEF G
Sbjct: 660 AGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGK 719
Query: 541 SWRKFTS-NSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFE 599
SW K +S NS E+LGV VLKSRGFF AYWYW+G GA +GF+L+FN +T++LT+LN FE
Sbjct: 720 SWSKNSSTNSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFE 779
Query: 600 KPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTV 659
KP+AVI++ESE+ ++ GG +LS+H +RE
Sbjct: 780 KPQAVITEESEN----SKTGGKIELSSH--------------------------RREAIA 809
Query: 660 GAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLT 719
A + KRGMVLPF+P S+TFD++ YSVDMP+EMK QG+LED+L LL GVSGAFRPGVLT
Sbjct: 810 EARRNTKRGMVLPFQPLSITFDDIRYSVDMPEEMKSQGVLEDRLKLLKGVSGAFRPGVLT 869
Query: 720 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVT 779
ALMGVSGAGKTTLMDVLAGRKTGGYI GNI ISGYPKKQETFTRISGYCEQNDIHSP VT
Sbjct: 870 ALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFTRISGYCEQNDIHSPHVT 929
Query: 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLT 839
++ESLLYSAWLRLP +VDS+T+KMFIE++MELVEL PL+ SLVGLPG +GLSTEQRKRLT
Sbjct: 930 IHESLLYSAWLRLPADVDSKTRKMFIEKVMELVELTPLKDSLVGLPGVNGLSTEQRKRLT 989
Query: 840 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD- 898
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FD
Sbjct: 990 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1049
Query: 899 ---------------------------EGIPGVENIKDGYNPATWMLEVTAKSQELTLEI 931
EGI GV IK GYNPATWMLEVT +QE L +
Sbjct: 1050 LLLLKRGGQEIYVGLLGRHSSCLIKYFEGIEGVSKIKGGYNPATWMLEVTTSAQEFLLGV 1109
Query: 932 DFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRN 991
DFT+IYK S LYRRNK LI+ELS+PAPGSKDLYFPT Y+QSFF QC+ACLWKQ SYWRN
Sbjct: 1110 DFTEIYKNSNLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRN 1169
Query: 992 PPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPV 1051
PPYTAVRF FTT IAL FGTMFWD+GTK + QDL NAMGSMY AV FLG Q SSVQPV
Sbjct: 1170 PPYTAVRFFFTTFIALIFGTMFWDLGTKRTKQQDLSNAMGSMYAAVLFLGVQNSSSVQPV 1229
Query: 1052 VAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFW 1111
VAVER VF RE+ AG+YSAMPYAFA V IEIPY+F + VYG+IVYAMIGFEW AAKFFW
Sbjct: 1230 VAVERTVFYRERAAGIYSAMPYAFAHVTIEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFW 1289
Query: 1112 YLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWY 1171
YLFFMFF+LLYFTFYGMM VA TPN HIAAIV+ FYGLWN+FSGF++PRTRIP+WWRWY
Sbjct: 1290 YLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWY 1349
Query: 1172 YWANPVAWTMYGLVASQFGDVEDKME-SGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVL 1230
YWA PVAWT+YGLV SQFGD++D+ E +G+TV+Q++ YF F+HDFLGVVA V+ F VL
Sbjct: 1350 YWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVL 1409
Query: 1231 FGVLFAVGIKRFNFQNR 1247
F +FA IK FNFQ R
Sbjct: 1410 FLFIFAFAIKAFNFQRR 1426
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|256538311|gb|ACU82515.1| pleiotropic drug resistance protein [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1936 bits (5015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 913/1277 (71%), Positives = 1059/1277 (82%), Gaps = 34/1277 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLL LAGKL LKFSGRVTYNGHGM+EFVPQRT+AYISQ D+HIG
Sbjct: 179 MTLLLGPPSSGKTTLLKTLAGKLGKDLKFSGRVTYNGHGMNEFVPQRTSAYISQQDLHIG 238
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETL+FSARCQGVG RYDMLTEL+RREK A IKPDPD+D+ MKAAA GQE NV+T
Sbjct: 239 EMTVRETLSFSARCQGVGPRYDMLTELSRREKAANIKPDPDLDIIMKAAALGGQETNVVT 298
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLE+C DT+VGDEM RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 299 DYVLKILGLEICADTMVGDEMFRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTT 358
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS+RQ IHILNGTA+ISLLQPAPETY+LFDDIIL+SD Q+VYQGPRE VL+FF+ M
Sbjct: 359 YQIVNSMRQYIHILNGTALISLLQPAPETYELFDDIILISDGQVVYQGPRENVLEFFQHM 418
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GF CP+RKGVADFLQEVTSRKDQ+QYW ++ YRFV+ +EFSEAFQSF VG+KL DEL
Sbjct: 419 GFTCPQRKGVADFLQEVTSRKDQEQYWTKRDEVYRFVSVEEFSEAFQSFHVGKKLGDELA 478
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK KSHPAALTT+ YG KKELLKA ISRELLLMKRNSFVYIFKL QL MA V+MT
Sbjct: 479 TPFDKSKSHPAALTTEKYGASKKELLKACISRELLLMKRNSFVYIFKLIQLILMAFVTMT 538
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LFFRT+MH+ +V DG +Y+GA FFA+++TMFNG S++++TI KLPVFYKQRD F+ WA
Sbjct: 539 LFFRTEMHRRTVDDGSVYMGALFFAIIITMFNGFSELALTILKLPVFYKQRDFLFFPPWA 598
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
Y++P WILKIPI+F+EV +WV +TYYV+GFDPN GR FK FL+LL VNQMASALFR I A
Sbjct: 599 YSIPTWILKIPITFVEVGIWVVMTYYVVGFDPNAGRFFKHFLMLLFVNQMASALFRLIGA 658
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GRN+IVA +FGSF LL + GGFVL+RDD+ WW+WGYW SPMMYAQN I NEF GH
Sbjct: 659 LGRNIIVANTFGSFALLTVLVLGGFVLARDDVHPWWIWGYWISPMMYAQNGIAVNEFLGH 718
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
WR NSNE+LGV +LKSRG FP A WYW+G+GATIG++LLFN FT++L +L+ FEK
Sbjct: 719 KWRHPAPNSNESLGVLILKSRGIFPQASWYWIGVGATIGYILLFNFLFTIALQYLDPFEK 778
Query: 601 PRAVISDESESNDLGNRIGGTAQL--STHGSNSSHKTCSESEDITVKDSFSQLLSQREVT 658
P+A++S E+ ++ + +L S+ G +SS +T ++ ++ + S +++ S E
Sbjct: 779 PQAIVSKETSTDKSVKKSQDVQELELSSKGKSSSERTENQI-SLSSRTSSARVGSFSE-- 835
Query: 659 VGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVL 718
A Q KKRGMVLPFEPHS+TFDE+ Y+VDMP+EMK QG+ ED+L LL GVSG+FRPGVL
Sbjct: 836 -EANQNKKRGMVLPFEPHSITFDEIRYAVDMPQEMKSQGVTEDRLELLKGVSGSFRPGVL 894
Query: 719 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFV 778
TALMGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETF RI+GYCEQ DIHSP V
Sbjct: 895 TALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARIAGYCEQTDIHSPHV 954
Query: 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838
TVYESL+YSAWLRLPP+VDS T+KMF+EE+MEL+ELNPLR ++VGLPG SGLSTEQRKRL
Sbjct: 955 TVYESLVYSAWLRLPPDVDSATRKMFVEEVMELIELNPLRDAIVGLPGVSGLSTEQRKRL 1014
Query: 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 898
TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF++FD
Sbjct: 1015 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFD 1074
Query: 899 E----------------------------GIPGVENIKDGYNPATWMLEVTAKSQELTLE 930
E I GV IKDGYNPATWMLE+T +QE TL
Sbjct: 1075 ELFLLRRGGEEIYVGPVGRHSSQLIEYFESIEGVPKIKDGYNPATWMLEITTAAQETTLG 1134
Query: 931 IDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWR 990
++F +YK SELYRRNKALI+ELS P S +LYFPT Y+QSFF+QC+ACLWKQH SYWR
Sbjct: 1135 VNFNTLYKDSELYRRNKALIKELSVPNENSNELYFPTKYSQSFFIQCIACLWKQHLSYWR 1194
Query: 991 NPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQP 1050
NPPY+AVRFLFTT IAL FGT+FWD+G+K QDLFNAMGSMY AV F+G Q +SVQP
Sbjct: 1195 NPPYSAVRFLFTTFIALMFGTIFWDLGSKRGTQQDLFNAMGSMYAAVLFIGVQNATSVQP 1254
Query: 1051 VVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFF 1110
VVA+ER VF RE+ AGMYSA+PYAF QV+IE+PYIF+ + VYG+IVY MIGFEW AAKFF
Sbjct: 1255 VVAIERTVFYRERAAGMYSALPYAFGQVVIELPYIFIQTVVYGVIVYGMIGFEWTAAKFF 1314
Query: 1111 WYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRW 1170
WY+FFM+F+LLYFTFYGMMTVA+TPNH+IAAIVS FYG WN+FSGF++PRTRIP+WWRW
Sbjct: 1315 WYIFFMYFTLLYFTFYGMMTVAVTPNHNIAAIVSSAFYGFWNLFSGFIVPRTRIPIWWRW 1374
Query: 1171 YYWANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVL 1230
YYW PVAWT+YGLV SQFGD+ D M+S +TV +FV +YF +K+DFLGVVA V VL
Sbjct: 1375 YYWICPVAWTLYGLVTSQFGDINDPMDSNQTVAEFVSNYFGYKYDFLGVVAAVHVGITVL 1434
Query: 1231 FGVLFAVGIKRFNFQNR 1247
FG +FA IK FNFQ R
Sbjct: 1435 FGFIFAFSIKVFNFQKR 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460732|ref|XP_004148099.1| PREDICTED: pleiotropic drug resistance protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1935 bits (5012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 912/1277 (71%), Positives = 1058/1277 (82%), Gaps = 34/1277 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLL LAGKL LKFSGRVTYNGHGM+EFVPQRT+AYISQ D+HIG
Sbjct: 179 MTLLLGPPSSGKTTLLKTLAGKLGKDLKFSGRVTYNGHGMNEFVPQRTSAYISQQDLHIG 238
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETL+FSARCQGVG RYDMLTEL+RREK A IKPDPD+D+ MKAAA GQE NV+T
Sbjct: 239 EMTVRETLSFSARCQGVGPRYDMLTELSRREKAANIKPDPDLDIIMKAAALGGQETNVVT 298
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLE+C DT+VGDEM RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 299 DYVLKILGLEICADTMVGDEMFRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTT 358
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS+RQ IHILNGTA+ISLLQPAPETY+LFDDIIL+SD Q+VYQGPRE VL+FF+ M
Sbjct: 359 YQIVNSMRQYIHILNGTALISLLQPAPETYELFDDIILISDGQVVYQGPRENVLEFFQHM 418
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GF CP+RKGVADFLQEVTSRKDQ+QYW ++ YRFV+ +EFSEAFQSF VG+KL DEL
Sbjct: 419 GFTCPQRKGVADFLQEVTSRKDQEQYWTKRDEVYRFVSVEEFSEAFQSFHVGKKLGDELA 478
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK KSHPAALTT+ YG KKELLKA ISRELLLMKRNSFVYIFKL QL MA V+MT
Sbjct: 479 TPFDKSKSHPAALTTEKYGASKKELLKACISRELLLMKRNSFVYIFKLIQLILMAFVTMT 538
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LFFRT+MH+ +V DG +Y+GA FFA+++ MFNG S++++TI KLPVFYKQRD F+ WA
Sbjct: 539 LFFRTEMHRRTVDDGSVYMGALFFAIIIIMFNGFSELALTILKLPVFYKQRDFLFFPPWA 598
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
Y++P WILKIPI+F+EV +WV +TYYV+GFDPN GR FK FL+LL VNQMASALFR I A
Sbjct: 599 YSIPTWILKIPITFVEVGIWVVMTYYVVGFDPNAGRFFKHFLMLLFVNQMASALFRLIGA 658
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GRN+IVA +FGSF LL + GGFVL+RDD+ WW+WGYW SPMMYAQN I NEF GH
Sbjct: 659 LGRNIIVANTFGSFALLTVLVLGGFVLARDDVHPWWIWGYWISPMMYAQNGIAVNEFLGH 718
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
WR NSNE+LGV +LKSRG FP A WYW+G+GATIG++LLFN FT++L +L+ FEK
Sbjct: 719 KWRHPAPNSNESLGVLILKSRGIFPQASWYWIGVGATIGYILLFNFLFTIALQYLDPFEK 778
Query: 601 PRAVISDESESNDLGNRIGGTAQL--STHGSNSSHKTCSESEDITVKDSFSQLLSQREVT 658
P+A++S E+ ++ + +L S+ G +SS +T ++ ++ + S +++ S E
Sbjct: 779 PQAIVSKETSTDKSVKKSQDVQELELSSKGKSSSERTENQI-SLSSRTSSARVGSFSE-- 835
Query: 659 VGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVL 718
A Q KKRGMVLPFEPHS+TFDE+ Y+VDMP+EMK QG+ ED+L LL GVSG+FRPGVL
Sbjct: 836 -EANQNKKRGMVLPFEPHSITFDEIRYAVDMPQEMKSQGVTEDRLELLKGVSGSFRPGVL 894
Query: 719 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFV 778
TALMGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETF RI+GYCEQ DIHSP V
Sbjct: 895 TALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARIAGYCEQTDIHSPHV 954
Query: 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838
TVYESL+YSAWLRLPP+VDS T+KMF+EE+MEL+ELNPLR ++VGLPG SGLSTEQRKRL
Sbjct: 955 TVYESLVYSAWLRLPPDVDSATRKMFVEEVMELIELNPLRDAIVGLPGVSGLSTEQRKRL 1014
Query: 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 898
TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF++FD
Sbjct: 1015 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFD 1074
Query: 899 E----------------------------GIPGVENIKDGYNPATWMLEVTAKSQELTLE 930
E I GV IKDGYNPATWMLE+T +QE TL
Sbjct: 1075 ELFLLRRGGEEIYVGPVGRHSSQLIEYFESIEGVPKIKDGYNPATWMLEITTAAQETTLG 1134
Query: 931 IDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWR 990
++F +YK SELYRRNKALI+ELS P S +LYFPT Y+QSFF+QC+ACLWKQH SYWR
Sbjct: 1135 VNFNTLYKDSELYRRNKALIKELSVPNENSNELYFPTKYSQSFFIQCIACLWKQHLSYWR 1194
Query: 991 NPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQP 1050
NPPY+AVRFLFTT IAL FGT+FWD+G+K QDLFNAMGSMY AV F+G Q +SVQP
Sbjct: 1195 NPPYSAVRFLFTTFIALMFGTIFWDLGSKRGTQQDLFNAMGSMYAAVLFIGVQNATSVQP 1254
Query: 1051 VVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFF 1110
VVA+ER VF RE+ AGMYSA+PYAF QV+IE+PYIF+ + VYG+IVY MIGFEW AAKFF
Sbjct: 1255 VVAIERTVFYRERAAGMYSALPYAFGQVVIELPYIFIQTVVYGVIVYGMIGFEWTAAKFF 1314
Query: 1111 WYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRW 1170
WY+FFM+F+LLYFTFYGMMTVA+TPNH+IAAIVS FYG WN+FSGF++PRTRIP+WWRW
Sbjct: 1315 WYIFFMYFTLLYFTFYGMMTVAVTPNHNIAAIVSSAFYGFWNLFSGFIVPRTRIPIWWRW 1374
Query: 1171 YYWANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVL 1230
YYW PVAWT+YGLV SQFGD+ D M+S +TV +FV +YF +K+DFLGVVA V VL
Sbjct: 1375 YYWICPVAWTLYGLVTSQFGDINDPMDSNQTVAEFVSNYFGYKYDFLGVVAAVHVGITVL 1434
Query: 1231 FGVLFAVGIKRFNFQNR 1247
FG +FA IK FNFQ R
Sbjct: 1435 FGFIFAFSIKVFNFQKR 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483991|ref|XP_004156752.1| PREDICTED: LOW QUALITY PROTEIN: pleiotropic drug resistance protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1932 bits (5005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 911/1277 (71%), Positives = 1057/1277 (82%), Gaps = 34/1277 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLL LAGKL LKFSGRVTYNGHGM+EFVPQRT+AYISQ D+HIG
Sbjct: 179 MTLLLGPPSSGKTTLLKTLAGKLGKDLKFSGRVTYNGHGMNEFVPQRTSAYISQQDLHIG 238
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRETL+FSARCQGVG RYDMLTEL+RREK A IKPDPD+D+ MKAAA GQE NV+T
Sbjct: 239 EMTVRETLSFSARCQGVGPRYDMLTELSRREKAANIKPDPDLDIIMKAAALGGQETNVVT 298
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLE+C DT+VGDEM RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 299 DYVLKILGLEICADTMVGDEMFRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTT 358
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS+RQ IHILNGTA+ISLLQPAPETY+LFDDIIL+SD Q+VYQGPRE VL+FF+ M
Sbjct: 359 YQIVNSMRQYIHILNGTALISLLQPAPETYELFDDIILISDGQVVYQGPRENVLEFFQHM 418
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GF CP+RKGVADFLQEVTSRKDQ+QYW ++ YRFV+ +EFSEAF SF VG+KL DEL
Sbjct: 419 GFTCPQRKGVADFLQEVTSRKDQEQYWTKRDEVYRFVSVEEFSEAFXSFHVGKKLGDELA 478
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
TPFDK KSHPAALTT+ YG KKELLKA ISRELLLMKRNSFVYIFKL QL MA V+MT
Sbjct: 479 TPFDKSKSHPAALTTEKYGASKKELLKACISRELLLMKRNSFVYIFKLIQLILMAFVTMT 538
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LFFRT+MH+ +V DG +Y+GA FFA+++ MFNG S++++TI KLPVFYKQRD F+ WA
Sbjct: 539 LFFRTEMHRRTVDDGSVYMGALFFAIIIIMFNGFSELALTILKLPVFYKQRDFLFFPPWA 598
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
Y++P WILKIPI+F+EV +WV +TYYV+GFDPN GR FK FL+LL VNQMASALFR I A
Sbjct: 599 YSIPTWILKIPITFVEVGIWVVMTYYVVGFDPNAGRFFKHFLMLLFVNQMASALFRLIGA 658
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GRN+IVA +FGSF LL + GGFVL+RDD+ WW+WGYW SPMMYAQN I NEF GH
Sbjct: 659 LGRNIIVANTFGSFALLTVLVLGGFVLARDDVHPWWIWGYWISPMMYAQNGIAVNEFLGH 718
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
WR NSNE+LGV +LKSRG FP A WYW+G+GATIG++LLFN FT++L +L+ FEK
Sbjct: 719 KWRHPAPNSNESLGVLILKSRGIFPQASWYWIGVGATIGYILLFNFLFTIALQYLDPFEK 778
Query: 601 PRAVISDESESNDLGNRIGGTAQL--STHGSNSSHKTCSESEDITVKDSFSQLLSQREVT 658
P+A++S E+ ++ + +L S+ G +SS +T ++ ++ + S +++ S E
Sbjct: 779 PQAIVSKETSTDKSVKKSQDVQELELSSKGKSSSERTENQI-SLSSRTSSARVGSFSE-- 835
Query: 659 VGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVL 718
A Q KKRGMVLPFEPHS+TFDE+ Y+VDMP+EMK QG+ ED+L LL GVSG+FRPGVL
Sbjct: 836 -EANQNKKRGMVLPFEPHSITFDEIRYAVDMPQEMKSQGVTEDRLELLKGVSGSFRPGVL 894
Query: 719 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFV 778
TALMGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETF RI+GYCEQ DIHSP V
Sbjct: 895 TALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARIAGYCEQTDIHSPHV 954
Query: 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838
TVYESL+YSAWLRLPP+VDS T+KMF+EE+MEL+ELNPLR ++VGLPG SGLSTEQRKRL
Sbjct: 955 TVYESLVYSAWLRLPPDVDSATRKMFVEEVMELIELNPLRDAIVGLPGVSGLSTEQRKRL 1014
Query: 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 898
TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF++FD
Sbjct: 1015 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFD 1074
Query: 899 E----------------------------GIPGVENIKDGYNPATWMLEVTAKSQELTLE 930
E I GV IKDGYNPATWMLE+T +QE TL
Sbjct: 1075 ELFLLRRGGEEIYVGPVGRHSSQLIEYFESIEGVPKIKDGYNPATWMLEITTAAQETTLG 1134
Query: 931 IDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWR 990
++F +YK SELYRRNKALI+ELS P S +LYFPT Y+QSFF+QC+ACLWKQH SYWR
Sbjct: 1135 VNFNTLYKDSELYRRNKALIKELSVPNENSNELYFPTKYSQSFFIQCIACLWKQHLSYWR 1194
Query: 991 NPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQP 1050
NPPY+AVRFLFTT IAL FGT+FWD+G+K QDLFNAMGSMY AV F+G Q +SVQP
Sbjct: 1195 NPPYSAVRFLFTTFIALMFGTIFWDLGSKRGTQQDLFNAMGSMYAAVLFIGVQNATSVQP 1254
Query: 1051 VVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFF 1110
VVA+ER VF RE+ AGMYSA+PYAF QV+IE+PYIF+ + VYG+IVY MIGFEW AAKFF
Sbjct: 1255 VVAIERTVFYRERAAGMYSALPYAFGQVVIELPYIFIQTVVYGVIVYGMIGFEWTAAKFF 1314
Query: 1111 WYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRW 1170
WY+FFM+F+LLYFTFYGMMTVA+TPNH+IAAIVS FYG WN+FSGF++PRTRIP+WWRW
Sbjct: 1315 WYIFFMYFTLLYFTFYGMMTVAVTPNHNIAAIVSSAFYGFWNLFSGFIVPRTRIPIWWRW 1374
Query: 1171 YYWANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLGVVAVVVAAFAVL 1230
YYW PVAWT+YGLV SQFGD+ D M+S +TV +FV +YF +K+DFLGVVA V VL
Sbjct: 1375 YYWICPVAWTLYGLVTSQFGDINDPMDSNQTVAEFVSNYFGYKYDFLGVVAAVHVGITVL 1434
Query: 1231 FGVLFAVGIKRFNFQNR 1247
FG +FA IK FNFQ R
Sbjct: 1435 FGFIFAFSIKVFNFQKR 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1247 | ||||||
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.711 | 0.603 | 0.568 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.491 | 0.430 | 0.680 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.507 | 0.435 | 0.543 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.506 | 0.434 | 0.542 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.487 | 0.428 | 0.535 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.493 | 0.426 | 0.534 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.570 | 0.491 | 0.458 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.487 | 0.426 | 0.472 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.493 | 0.435 | 0.529 | 1.9e-278 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.585 | 0.516 | 0.441 | 2.6e-239 |
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2636 (933.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 513/902 (56%), Positives = 652/902 (72%)
Query: 1 MTLLLGPPCXXXXXXXXXXXXXXXXXXXFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SG +TYNG+ +DEFVP++T+AYISQ+D+H+G
Sbjct: 199 MTLLLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVG 258
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
MTV+ETL FSARCQGVG+RYD+L ELARREK+AGI P+ D+D++MKA+A +G + +++T
Sbjct: 259 IMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVT 318
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DT+VGD+M+RGISGGQKKRVTTGEM+VGP LFMDEISTGLDSSTT
Sbjct: 319 DYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 378
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIV ++Q +H+ T ++SLLQPAPET+DLFDDIIL+S+ QIVYQGPR+ +L+FFES
Sbjct: 379 FQIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESF 438
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKG ADFLQEVTS+KDQ+QYWV+ PY ++ EF+ ++SF VG K+++EL
Sbjct: 439 GFKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELA 498
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFDK + H AAL Y V K+ELLK+ +E LLM+RN+F Y+FK Q+ +A ++ T
Sbjct: 499 VPFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITST 558
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LF RT+M+ + D +Y+GA F +++ MFNG ++++M +++LPVFYKQRDL FY +W
Sbjct: 559 LFLRTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWT 618
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFXXXXXVNQMASALFRFIAA 480
++LP ++L IP S LE W+ +TYY IGF P+ R FKQF + QMA++LFR IA+
Sbjct: 619 FSLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIAS 678
Query: 481 AGRNMIVAMXXXXXXXXXXXXXXXXXXXRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
R M++A + I WW W YW SP+ YA N +V NE F
Sbjct: 679 VCRTMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAP 738
Query: 541 SWRKFTSNSNET--LGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQF 598
W ++SN T LG VL + + WYW+ +GA + F LFNI FTL+LT+LN
Sbjct: 739 RWMNKMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPL 798
Query: 599 EKPRAVI-SDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREV 657
K ++ +E+E D G + LST N + +DS + E
Sbjct: 799 GKKAGLLPEEENEDADQG-KDPMRRSLSTADGNRRGEVAMGRMS---RDSAA------EA 848
Query: 658 TVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGV 717
+ GA K+GMVLPF P +++FD+V Y VDMP EM+ QG+ E +L LL GV+GAFRPGV
Sbjct: 849 SGGA--GNKKGMVLPFTPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGV 906
Query: 718 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPF 777
LTALMGVSGAGKTTLMDVLAGRKTGGYI G++ ISG+PK QETF RISGYCEQ DIHSP
Sbjct: 907 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQ 966
Query: 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837
VTV ESL++SA+LRLP EV + + MF++++MELVEL+ LR S+VGLPG +GLSTEQRKR
Sbjct: 967 VTVRESLIFSAFLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKR 1026
Query: 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESF 897
LTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFE+F
Sbjct: 1027 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAF 1086
Query: 898 DE 899
DE
Sbjct: 1087 DE 1088
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2257 (799.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 417/613 (68%), Positives = 493/613 (80%)
Query: 1 MTLLLGPPCXXXXXXXXXXXXXXXXXXXFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
M LLLGPP +GRVTYNGHGM+EFVPQRTAAYI Q+DVHIG
Sbjct: 182 MALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIG 241
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRET A++AR QGVGSRYDMLTELARREKEA IKPDPDID++MKA +T G++ NV+T
Sbjct: 242 EMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMT 301
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGLEVC DT+VGD+M+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 302 DYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTT 361
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIVNS+R +HI NGTA+ISLLQPAPET++LFDDIIL+++ +I+Y+GPR+ V++FFE+M
Sbjct: 362 YQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETM 421
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCP RKGVADFLQEVTS+KDQ QYW ++ PYRF+ +EF+EAFQSF VG+++ DEL
Sbjct: 422 GFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELA 481
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFDK KSHPAALTTK YGVG KEL+K + SRE LLMKRNSFVY FK QL MA ++MT
Sbjct: 482 LPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMT 541
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
LFFRT+M K + DG +Y GA FF +MM MFNGMS++SMTIAKLPVFYKQRDL FY AW
Sbjct: 542 LFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWV 601
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFXXXXXVNQMASALFRFIAA 480
Y+LP W+LKIPISF+E A+ F+TYYVIGFDPN+GRLFKQ+ +NQMASALF+ +AA
Sbjct: 602 YSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAA 661
Query: 481 AGRNMIVAMXXXXXXXXXXXXXXXXXXXRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GRNMIVA RDDIKKWW+WGYW SP+MY QNAI+ANEFFGH
Sbjct: 662 LGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGH 721
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
SW + NS+ETLGV LKSRGF PHAYWYW+G GA +GFV+LFN GFTL+LTFLN K
Sbjct: 722 SWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGK 781
Query: 601 PRAVISDESESND 613
P+AVI++E S++
Sbjct: 782 PQAVIAEEPASDE 794
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1840 (652.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 346/637 (54%), Positives = 445/637 (69%)
Query: 1 MTLLLGPPCXXXXXXXXXXXXXXXXXXXFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGR+TY GH EFVPQ+T AYISQHD+H G
Sbjct: 201 MTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFG 260
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRE+L FS RC GVG+RY +LTEL+RRE+EAGIKPDP+ID +MK+ A GQE +++T
Sbjct: 261 EMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSLVT 320
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DTLVGD M RGISGGQ+KR+TTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 321 DYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTT 380
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQI +RQ +HI + T VISLLQPAPET++LFDDIILLS+ QIVYQG R+ VL+FFE M
Sbjct: 381 FQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEYM 440
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKG+ADFLQEVTS+KDQ+QYW +E PY +V+ +FS F SF GQ+LA E R
Sbjct: 441 GFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFR 500
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
P+DK K+HPAAL T+ YG+ K+L KA RE LLMKRNSFVY+FK Q++ M+L++MT
Sbjct: 501 VPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMT 560
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
++FRT+MH +V DG + GA FF+++ MFNGM++++ T+ +LPVF+KQRD FY WA
Sbjct: 561 VYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWA 620
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFXXXXXVNQMASALFRFIAA 480
+ALP ++LKIP+S +E +W+ LTYY IGF P+ R F+Q VNQMA +LFRF+ A
Sbjct: 621 FALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGA 680
Query: 481 AGRNMIVAMXXXXXXXXXXXXXXXXXXXRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GR ++A +DDI W W Y+ SPMMY Q A+V NEF
Sbjct: 681 LGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDE 740
Query: 541 SWRKFTSNSN---ETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQ 597
W +++ +T+G +LKSRGFF YW+W+ +GA +GF +LFN + ++L +LN
Sbjct: 741 RWGSPNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNP 800
Query: 598 FEKPRAV-ISDESESNDLGNRIGGTAQLSTHGSNSSH 633
+A + +E + G+ G + S SSH
Sbjct: 801 LGNSKATTVVEEGKDKHKGSHSGTGGSVVELTSTSSH 837
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1823 (646.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 346/638 (54%), Positives = 441/638 (69%)
Query: 1 MTLLLGPPCXXXXXXXXXXXXXXXXXXXFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGR+TY GH EFVPQ+T AYISQHD+H G
Sbjct: 203 MTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFG 262
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRE L FS RC GVGSRY +++EL+RREKE GIKPDP ID +MK+ A GQE +++T
Sbjct: 263 EMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVT 322
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C D L GD M RGISGGQKKR+TTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 323 DYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTT 382
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQI +RQ +HI + T +ISLLQPAPET++LFDDIILLS+ QIVYQGPR+ VL+FFE
Sbjct: 383 FQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEYF 442
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GF+CPERKGVADFLQEVTS+KDQ+QYW +E PY +V+ +FS F +F GQKL E R
Sbjct: 443 GFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFR 502
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
P+DK K+H AAL T+ YG+ EL KA RE LLMKRNSFVY+FK Q++ M+L++MT
Sbjct: 503 VPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITMT 562
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
++ RT+MH +V DG + GA FF+++ MFNG+++++ T+ +LPVFYKQRD FY WA
Sbjct: 563 VYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWA 622
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFXXXXXVNQMASALFRFIAA 480
+ALPAW+LKIP+S +E +W+ LTYY IGF P+ R F+Q VNQMA +LFRF+ A
Sbjct: 623 FALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGA 682
Query: 481 AGRNMIVAMXXXXXXXXXXXXXXXXXXXRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GR +++ +DDI+ W W Y+ SPMMY Q AIV NEF
Sbjct: 683 IGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDE 742
Query: 541 SWRK--FTSNSN-ETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQ 597
W + + N +T+G +LKSRGFF YW+W+ + A +GF LLFN+ + L+L +LN
Sbjct: 743 RWSSPNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLNP 802
Query: 598 FEKPRAVISDESESNDLG-NRIGGTAQLSTHGSNSSHK 634
+A + +E + G NR GT ++SS+K
Sbjct: 803 LGNSKATVVEEGKDKQKGENR--GTEGSVVELNSSSNK 838
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1789 (634.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 326/609 (53%), Positives = 432/609 (70%)
Query: 1 MTLLLGPPCXXXXXXXXXXXXXXXXXXXFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+TLLLGPP SG++TYNG+ + E + RT+AY+SQ D H+
Sbjct: 163 LTLLLGPPSSGKTTLLLALAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVA 222
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVR+TL F+ RCQGVG +YDML ELARREK AGI PD D+D++MK+ A G E +++
Sbjct: 223 EMTVRQTLEFAGRCQGVGFKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVV 282
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
+Y +K+LGL+ C DTLVGDEM++GISGGQKKR+TTGE++VGPA LFMDEIS GLDSSTT
Sbjct: 283 EYVMKILGLDTCADTLVGDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT 342
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
QI+ +R + H L GT VISLLQP+PETY+LFDD+IL+S+ QI+YQGPR+ VLDFF S+
Sbjct: 343 HQIIMYMRHSTHALEGTTVISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSL 402
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GF CP+RK VADFLQEVTS+KDQQQYW PYR+V +F+EAF+S+ G+KLA +L
Sbjct: 403 GFTCPDRKNVADFLQEVTSKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLE 462
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFDK +H AAL+T YGV K ELLK N + + LMK+N+F+Y+FK QL +AL++MT
Sbjct: 463 VPFDKRFNHSAALSTSQYGVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMT 522
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+F RT MH +++ DG IY+G+ +F++++ +FNG +++ M +AKLPV YK RDL FY +WA
Sbjct: 523 VFCRTTMHHNTIDDGNIYLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWA 582
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFXXXXXVNQMASALFRFIAA 480
Y LP+W+L IP S +E A WV +TYY IG+DP R +QF ++QM+ LFR + +
Sbjct: 583 YTLPSWLLSIPTSIIESATWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGS 642
Query: 481 AGRNMIVAMXXXXXXXXXXXXXXXXXXXRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
GR+MIVA RD I WW+WGYW SP+MYAQNA NEF GH
Sbjct: 643 LGRHMIVANTFGSFAMLVVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGH 702
Query: 541 SWRKFTSN-SNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFE 599
+W+K N ++++LG+ +LK R F YWYW+G+ A +G+ +LFNI FTL L LN +
Sbjct: 703 NWQKTAGNHTSDSLGLALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWG 762
Query: 600 KPRAVISDE 608
K +AV+S E
Sbjct: 763 KFQAVVSRE 771
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1762 (625.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 329/616 (53%), Positives = 428/616 (69%)
Query: 1 MTLLLGPPCXXXXXXXXXXXXXXXXXXXFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SG VTYNG+ ++EFVP +T+AYISQ+D+H+G
Sbjct: 197 MTLLLGPPSSGKTTLLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVG 256
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
MTV+ETL FSARCQGVG+RYD+L ELARREK+AGI P+ D+D++MKA+A +G +++++T
Sbjct: 257 IMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLIT 316
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DT+VGD+M+RGISGGQKKRVTTGEM+VGP LFMDEISTGLDSSTT
Sbjct: 317 DYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 376
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIV ++Q +H+ T +ISLLQPAPET+DLFDDIILLS+ QIVYQGPR+ +L+FFES
Sbjct: 377 FQIVKCLQQIVHLTEATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESF 436
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKG ADFLQEVTS+KDQ+QYWV PYR++ EF+ +F+ F VG KL++EL
Sbjct: 437 GFKCPERKGTADFLQEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELS 496
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
P+DK KSH AAL Y + K ELLK+ +E +LMKRNSF Y+FK Q+ +A ++ T
Sbjct: 497 VPYDKSKSHKAALMFDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITST 556
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
L+ RT+MH + D IYVG+ FA+++ MFNG+++++MTI +LPVFYKQRDL F+ W
Sbjct: 557 LYLRTEMHTRNEIDANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWT 616
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFXXXXXVNQMASALFRFIAA 480
Y LP ++L IPIS E W+ +TYY IG+ P+ R FKQF + QMA+ +FRFIA+
Sbjct: 617 YTLPTFLLGIPISIFESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIAS 676
Query: 481 AGRNMIVAMXXXXXXXXXXXXXXXXXXXRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
R M +A R +I WW W YW SP+ YA NAI NE F
Sbjct: 677 TCRTMTIANTGGVLVLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAP 736
Query: 541 SW-RKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFE 599
W K + NS LG VL F WYW+G+G +GF ++FN FTL+LT+L+
Sbjct: 737 RWMNKMSGNSTTRLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLG 796
Query: 600 KPRAVISDESESNDLG 615
K +A++ E + G
Sbjct: 797 KAQAILPKEEDEEAKG 812
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1613 (572.9 bits), Expect = 0., Sum P(3) = 0.
Identities = 335/730 (45%), Positives = 461/730 (63%)
Query: 1 MTLLLGPPCXXXXXXXXXXXXXXXXXXXFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+TLLLGPP SG ++YNGH +DEFVPQ+T+AYISQ+D+HI
Sbjct: 202 LTLLLGPPSCGKTTLLKALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIA 261
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
EMTVRET+ FSARCQGVGSR D++ E+++REKE GI PD ++D YMKA + EG + ++ T
Sbjct: 262 EMTVRETVDFSARCQGVGSRTDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQT 321
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C + L+GD M RGISGGQKKR+TT EM+VGP ALFMDEI+ GLDSST
Sbjct: 322 DYILKILGLDICAEILIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTA 381
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
FQIV S++Q HI + T ++SLLQPAPE+YDLFDDI+L++ +IVY GPR VL+FFE
Sbjct: 382 FQIVKSLQQFAHISSATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDC 441
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GF+CPERKGVADFLQEV S+KDQ QYW H+++PY FV+ + S+ F+ ++G+K+ D L
Sbjct: 442 GFRCPERKGVADFLQEVISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLS 501
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
P+D+ KSH AL+ +Y + EL A ISRE LLMKRN FVYIFK QL A ++MT
Sbjct: 502 KPYDRSKSHKDALSFSVYSLPNWELFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMT 561
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+F RT+M D + G Y+ A FFA+++ + +G ++SMT +L VFYKQ+ L FY AWA
Sbjct: 562 VFIRTRMGIDIIH-GNSYMSALFFALIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWA 620
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFXXXXXVNQMASALFRFIAA 480
YA+PA +LK+P+SF E VW L+YYVIG+ P R FKQF V+ + ++FR +AA
Sbjct: 621 YAIPATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAA 680
Query: 481 AGRNMIVAMXXXXXXXXXXXXXXXXXXXRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
+ ++ ++ + W WG+W +P+ Y + + NEF
Sbjct: 681 IFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAP 740
Query: 541 SWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEK 600
W + N N TLG +L++RG + Y YW+ L A +GF +LFNI FTL+LTFL
Sbjct: 741 RWNQMQPN-NFTLGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTS 799
Query: 601 PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVG 660
RA+IS + S + GT + ST S+ KT ++S + ++ +L + +TV
Sbjct: 800 SRAMISQDKLSE-----LQGTEK-STEDSSVRKKT-TDSP-VKTEEEDKMVLPFKPLTV- 850
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSV--DMPKEMKLQGILEDKLMLLNGVSGAFRPGVL 718
Q + +P E +D+ + D+ + GIL LM GVSGA + +L
Sbjct: 851 TFQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFR-PGILT-ALM---GVSGAGKTTLL 905
Query: 719 TALMGVSGAG 728
L G +G
Sbjct: 906 DVLAGRKTSG 915
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1536 (545.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 288/609 (47%), Positives = 398/609 (65%)
Query: 1 MTLLLGPPCXXXXXXXXXXXXXXXXXXXFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP +G +TYNG +++F +RT+AYISQ D HI
Sbjct: 188 MTLLLGPPGSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIA 247
Query: 61 EMTVRETLAFSARCQGVGSRY-DMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVL 119
E+TVRETL F+ARCQG + + +L R EKE GI+P +ID +MKAA+ +G++ +V
Sbjct: 248 ELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVS 307
Query: 120 TDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 179
TDY LKVLGL+VC DT+VG++M+RG+SGGQ+KRVTTGEM VGP LFMDEISTGLDSST
Sbjct: 308 TDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSST 367
Query: 180 TFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFES 239
TFQIV IR +H+++ T +++LLQPAPET+DLFDD+ILLS+ +VYQGPRE V+ FFES
Sbjct: 368 TFQIVKCIRNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFES 427
Query: 240 MGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADEL 299
+GF+ P RKGVADFLQEVTS+KDQ QYW PY+F+ + + AF++ G +L
Sbjct: 428 LGFRLPPRKGVADFLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKL 487
Query: 300 RTPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSM 359
PFDK + P+AL + + E LK RELLL+KR+ F+Y F+ Q+ + LV+
Sbjct: 488 AAPFDKKSADPSALCRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTA 547
Query: 360 TLFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAW 419
T+F +T++H S G Y+ FF ++ MFNG S++ + I++LPVFYKQRD F+ AW
Sbjct: 548 TVFLKTRLHPTSEQFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAW 607
Query: 420 AYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFXXXXXVNQMASALFRFIA 479
++++ +W+L++P S LE VW + Y+ +G P+ GR F+ V+QMA LFR +A
Sbjct: 608 SWSIASWLLRVPYSVLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMA 667
Query: 480 AAGRNMIVAMXXXXXXXXXXXXXXXXXXXRDDIKKWWVWGYWCSPMMYAQNAIVANEFFG 539
+ R+M++A + DIK WWVWG+W SP+ Y Q AI NEF
Sbjct: 668 SLARDMVIANTFGSAAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTA 727
Query: 540 HSWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFE 599
W ++ S+ T+G+ +LK R F + YWYW+G+ IG+ +LFN TL+L +LN
Sbjct: 728 TRWMTPSAISDTTIGLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLR 787
Query: 600 KPRAVISDE 608
K RAV+ D+
Sbjct: 788 KARAVVLDD 796
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1745 (619.3 bits), Expect = 1.9e-278, Sum P(2) = 1.9e-278
Identities = 327/618 (52%), Positives = 430/618 (69%)
Query: 1 MTLLLGPPCXXXXXXXXXXXXXXXXXXXFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP +GRVTYNGHG++EFVPQ+T+AYISQ+DVH+G
Sbjct: 175 MTLLLGPPSSGKTTLLLALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVG 234
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
MTV+ETL FSARCQGVG+RYD+L+EL RREK+AGI P+P++D++MK+ A +++++T
Sbjct: 235 VMTVQETLDFSARCQGVGTRYDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLIT 294
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY L++LGL++C DT+VGDEM+RGISGGQKKRVTTGEM+VGP LFMDEISTGLDSSTT
Sbjct: 295 DYTLRILGLDICKDTVVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 354
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIV +++ + + T ++SLLQPAPET++LFDDIILLS+ QIVYQGPR+ VL FFE+
Sbjct: 355 YQIVKCLQEIVRFTDATVLMSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETC 414
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCP+RKG ADFLQEVTSRKDQ+QYW + PY +++ EFS+ F++F VG L +L
Sbjct: 415 GFKCPDRKGTADFLQEVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLS 474
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
P+D+ KSHPA+L K + V K +L K RELLLMKRN+F YI K Q+ MAL++ T
Sbjct: 475 VPYDRFKSHPASLVFKKHSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIAST 534
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
++ RT+M + SDG +Y+GA F++++ MFNG +++++ I +LPVFYKQRDL F+ W
Sbjct: 535 VYLRTEMGTKNESDGAVYIGALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWT 594
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFXXXXXVNQMASALFRFIAA 480
++LP ++L IPIS E VWV +TYY+IGF P + R K QMA +FRFIAA
Sbjct: 595 FSLPTFLLGIPISIFESVVWVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAA 654
Query: 481 AGRNMIVAMXXXXXXXXXXXXXXXXXXXRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
R+MI+A R +I KWW W YW SPM Y +A+ NE
Sbjct: 655 TCRSMILANTGGALVILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAP 714
Query: 541 SWRKFTSNSNET-LGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFE 599
W S+ N T LG+ VL+ F WYW+G+G +GF +LFNI TL+LTFLN E
Sbjct: 715 RWINQPSSDNSTSLGLAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLE 774
Query: 600 KPRAVISDES-ESNDLGN 616
K +AV+S E+ E N N
Sbjct: 775 KQQAVVSKENTEENRAEN 792
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1582 (562.0 bits), Expect = 2.6e-239, Sum P(2) = 2.6e-239
Identities = 332/752 (44%), Positives = 462/752 (61%)
Query: 1 MTLLLGPP-CXXXXXXXXXXXXXXXXXXXFSGRVTYNGHGMDEFVPQRTAAYISQHDVHI 59
+TLLLGPP C + G ++YNGHG++E VPQ+T+AYISQHD+HI
Sbjct: 167 LTLLLGPPGCGKTTLLKALSGNLENNLKCY-GEISYNGHGLNEVVPQKTSAYISQHDLHI 225
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVL 119
EMT RET+ FSARCQGVGSR D++ E+++REK+ GI PDP+ID YMKA + +G + ++
Sbjct: 226 AEMTTRETIDFSARCQGVGSRTDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQ 285
Query: 120 TDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 179
TDY LK+LGL++C +TLVG+ M RGISGGQKKR+TT EM+VGP ALFMDEI+ GLDSST
Sbjct: 286 TDYILKILGLDICAETLVGNAMKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSST 345
Query: 180 TFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFES 239
FQI+ S++Q HI N T +SLLQPAPE+YDLFDDI+L+++ +IVY GPR+ VL FFE
Sbjct: 346 AFQIIKSLQQVAHITNATVFVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEE 405
Query: 240 MGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADEL 299
GF+CPERKGVADFLQEV S+KDQ QYW+H+ +P+ FV+ S+ F+ +G+K+ + L
Sbjct: 406 CGFQCPERKGVADFLQEVISKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEAL 465
Query: 300 RTPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSM 359
P+D K+H AL+ +Y + K EL +A ISRE LLMKRN FVY+FK QL A+++M
Sbjct: 466 SKPYDISKTHKDALSFNVYSLPKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITM 525
Query: 360 TLFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAW 419
T+F RT+M D + G Y+ FFA ++ + +G+ ++SMT+ +L VFYKQ+ L FY AW
Sbjct: 526 TVFIRTRMDIDIIH-GNSYMSCLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAW 584
Query: 420 AYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFXXXXXVNQMASALFRFIA 479
AYA+PA +LKIP+SF E VW LTYYVIG+ P R F+QF V+ + ++FR IA
Sbjct: 585 AYAIPATVLKIPLSFFESLVWTCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIA 644
Query: 480 AAGRNMIVAMXXXXXXXXXXXXXXXXXXXRDDIKKWWVWGYWCSPMMYAQNAIVANEFFG 539
A + + AM D+ W WG+W +P+ YA+ + NEF
Sbjct: 645 AIFQTGVAAMTAGSFVMLITFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLA 704
Query: 540 HSWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFE 599
W+K +N TLG +L+SRG Y YW+ L A +G ++FN FTL+L+FL
Sbjct: 705 PRWQKMQP-TNVTLGRTILESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPT 763
Query: 600 KPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTV 659
R +IS + S + GT S +K S T +D +L + +T+
Sbjct: 764 SSRPMISQDKLSE-----LQGTKDSSV----KKNKPLDSSIK-TNEDPGKMILPFKPLTI 813
Query: 660 GAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLT 719
Q + +P E ++E + + E+ L L G+SGA + +L
Sbjct: 814 -TFQDLNYYVDVPVEMKGQGYNEK--KLQLLSEIT-GAFRPGVLTALMGISGAGKTTLLD 869
Query: 720 ALMG--VSG--AGKTTLMDVLAGRKTGGYITG 747
L G SG G+ + L ++T ++G
Sbjct: 870 VLAGRKTSGYIEGEIRISGFLKVQETFARVSG 901
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5835 | 0.9855 | 0.8412 | N/A | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.7070 | 0.9887 | 0.8462 | yes | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.7071 | 0.9719 | 0.8517 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6692 | 0.9839 | 0.8514 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.7082 | 0.9767 | 0.8493 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.6927 | 0.9743 | 0.8461 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.7062 | 0.9887 | 0.8462 | N/A | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5179 | 0.9759 | 0.8410 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| PtrPDR12 | pleiotropic drug resistance, ABC transporter family protein (1424 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1247 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-94 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-89 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-70 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 6e-62 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 6e-53 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-50 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 9e-50 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 7e-44 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-40 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-39 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-35 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-34 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-32 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-31 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 7e-31 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-29 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 3e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-28 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-27 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-25 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-25 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-22 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-22 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-22 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-22 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 8e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 8e-22 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-19 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-19 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-19 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-19 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-19 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 7e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-18 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-18 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-18 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-18 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-18 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 6e-18 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-18 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-17 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-17 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-17 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-16 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-16 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-16 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-16 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-16 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 8e-15 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-14 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-14 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-14 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-14 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-14 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 7e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 7e-14 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-13 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-13 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-13 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-13 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-13 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-13 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-13 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 9e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-12 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-12 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-12 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 7e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-12 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 8e-12 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 9e-12 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-11 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-11 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-11 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 5e-11 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 6e-11 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 7e-11 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 8e-11 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 9e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-10 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-10 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-10 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-10 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-10 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-10 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-10 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-10 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 7e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 8e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-10 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-09 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-09 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-09 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-09 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-09 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-09 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-09 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-09 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-09 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-09 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 8e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 9e-09 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-08 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-08 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-08 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-08 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-08 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-08 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-08 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-08 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-08 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-08 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 6e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 6e-08 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-08 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 7e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 8e-08 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-07 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-07 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-07 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-07 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-07 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-07 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-07 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-07 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-07 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 3e-07 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-07 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-07 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-07 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-07 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-07 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 5e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-07 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 6e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 6e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 6e-07 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 7e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 7e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 8e-07 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 9e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 9e-07 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-06 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-06 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-06 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-06 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-06 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-06 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-06 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-06 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-06 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-06 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-06 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-06 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-06 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 4e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 4e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-06 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 5e-06 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 5e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 5e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 6e-06 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 7e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 7e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 8e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 9e-06 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-05 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-05 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-05 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-05 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-05 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-05 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-05 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-05 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-05 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-05 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 3e-05 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 4e-05 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-05 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-05 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 5e-05 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-05 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-05 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-05 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-05 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-05 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 6e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 6e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-05 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-05 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 7e-05 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 7e-05 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 7e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 7e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 8e-05 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 9e-05 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-04 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-04 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-04 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-04 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-04 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-04 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-04 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-04 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 2e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-04 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-04 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-04 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-04 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-04 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-04 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-04 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-04 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 5e-04 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 6e-04 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 6e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 6e-04 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 7e-04 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 7e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-04 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 7e-04 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 7e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 9e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 9e-04 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 0.001 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 0.001 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 0.001 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.001 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.001 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.001 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 0.001 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 0.001 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 0.002 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 0.002 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 0.002 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.002 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.002 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.002 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.002 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.002 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.002 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 0.003 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.003 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 0.003 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.003 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 0.003 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.003 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.003 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 0.004 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 0.004 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 0.004 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1803 bits (4672), Expect = 0.0
Identities = 753/1281 (58%), Positives = 946/1281 (73%), Gaps = 37/1281 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
MTLLLGPP SGKTTLLLALAGKLD LK SG +TYNG+ ++EFVP++T+AYISQ+DVH+G
Sbjct: 193 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVG 252
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
MTV+ETL FSARCQGVG+RYD+L+ELARREK+AGI P+ ++D++MKA A EG +++++T
Sbjct: 253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLIT 312
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
DY LK+LGL++C DT+VGDEM+RGISGGQKKRVTTGEM+VGP LFMDEISTGLDSSTT
Sbjct: 313 DYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 372
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
+QIV ++Q +H+ T ++SLLQPAPET+DLFDDIILLS+ QIVYQGPR+ +L+FFES
Sbjct: 373 YQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESC 432
Query: 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELR 300
GFKCPERKG ADFLQEVTS+KDQ+QYW + PYR+++ EF+E F+SF VG +L +EL
Sbjct: 433 GFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELS 492
Query: 301 TPFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMT 360
PFDK +SH AAL Y V K ELLKA +E LLMKRN+FVY+FK Q+ +A ++ T
Sbjct: 493 VPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIAST 552
Query: 361 LFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWA 420
+F RT+MH + DG +Y+GA F++++ MFNG +++++ I +LPVFYKQRDL F+ W
Sbjct: 553 VFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWT 612
Query: 421 YALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480
+ LP ++L IPIS +E VWV +TYY IGF P R FKQ LL+ L+ QMA+ +FR IA+
Sbjct: 613 FTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS 672
Query: 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGH 540
R MI+A + G+ VLL++F GGF+L + +I WW W YW SP+ Y NA+ NE F
Sbjct: 673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAP 732
Query: 541 SW-RKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFE 599
W K S+++ LG VL F WYW+G+GA +GF +LFN+ FTL+LT+LN
Sbjct: 733 RWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLG 792
Query: 600 KPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTV 659
K +A+IS+E+ G LS+ N++ + + S ++ S
Sbjct: 793 KKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEA--A 850
Query: 660 GAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLT 719
+ P KRGMVLPF P +++FD+V Y VDMP EMK QG+ ED+L LL V+GAFRPGVLT
Sbjct: 851 NGVAP-KRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLT 909
Query: 720 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVT 779
ALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISG+PKKQETF RISGYCEQNDIHSP VT
Sbjct: 910 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVT 969
Query: 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLT 839
V ESL+YSA+LRLP EV E + MF++E+MELVEL+ L+ ++VGLPG +GLSTEQRKRLT
Sbjct: 970 VRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLT 1029
Query: 840 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDE
Sbjct: 1030 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1089
Query: 900 ----------------------------GIPGVENIKDGYNPATWMLEVTAKSQELTLEI 931
IPGV IK+ YNPATWMLEV++ + E+ L I
Sbjct: 1090 LLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGI 1149
Query: 932 DFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRN 991
DF + YK S LY+RNKAL++ELS P PG+ DLYF T Y+QS + Q +CLWKQ W+YWR+
Sbjct: 1150 DFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRS 1209
Query: 992 PPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPV 1051
P Y VRF FT AL GT+FW +GTK DL +G+MY AV F+G CS+VQP+
Sbjct: 1210 PDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPM 1269
Query: 1052 VAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFW 1111
VAVER VF RE+ AGMYSA+PYA AQV+ EIPY+ + ++ Y +IVYAM+ FEW AAKFFW
Sbjct: 1270 VAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFW 1329
Query: 1112 YLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWY 1171
+ F FFS LYFT+YGMMTV++TPN +AAI + FYGL+N+FSGF IPR +IP WW WY
Sbjct: 1330 FYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWY 1389
Query: 1172 YWANPVAWTMYGLVASQFGDVEDK-----MESGETVKQFVRSYFDFKHDFLGVVAVVVAA 1226
YW PVAWT+YGL+ SQ+GDVED T+K +++ ++ + DF+G VA V+
Sbjct: 1390 YWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVG 1449
Query: 1227 FAVLFGVLFAVGIKRFNFQNR 1247
F V F +FA I+ NFQ R
Sbjct: 1450 FTVFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1060 bits (2742), Expect = 0.0
Identities = 369/1293 (28%), Positives = 579/1293 (44%), Gaps = 163/1293 (12%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLD-SKLKFSGRVTYNGHGMDEFVPQRTA--AYISQHDV 57
+T++LG P SG +TLL +A D + G +TY+G +E Y ++ DV
Sbjct: 89 LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDV 148
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
H +TV ETL F+ARC+ +R D ++ +
Sbjct: 149 HFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKH------------------------- 183
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
+ D Y+ GL +T VG++ VRG+SGG++KRV+ E +G A D + GLDS
Sbjct: 184 -IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
Query: 178 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFF 237
+T + + +++ + +IL+ T ++++ Q + + Y+LFD +I+L + +Y GP + +F
Sbjct: 243 ATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYF 302
Query: 238 ESMGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMP-YRFVTAQEFSEAFQSFTVGQKLA 296
E MGFKCP+R+ ADFL +TS ++Q E R T QEF +++ +L
Sbjct: 303 EKMGFKCPDRQTTADFLTSLTSPA-ERQIKPGYEKKVPR--TPQEFETYWRNSPEYAQLM 359
Query: 297 DELRTPFDKC--------------KSHP-AALTTKMYGVGKKELLKANISRELLLMKRNS 341
E+ D+C + Y V +K ++R L MK N
Sbjct: 360 KEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNP 419
Query: 342 FVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMTI 401
+F + MAL+ ++F+ + SD GA FFA++ F+ + +I+
Sbjct: 420 SFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEIASMY 476
Query: 402 AKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQF 461
P+ K R Y A A+ + I +IP +E V+ + Y+++ F GR F
Sbjct: 477 EARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYL 536
Query: 462 LLLLLVNQMASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYW 521
L+L + S LFR I A + + AM+ + +LL L + GF + R + W W Y+
Sbjct: 537 LILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYY 596
Query: 522 CSPMMYAQNAIVANEFFGHSWRKFT----SNSNETLGV--QVLKSRGFFP---------- 565
+P+ YA +++ NEF G + + LGV +V G P
Sbjct: 597 VNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDY 656
Query: 566 -------HAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEKPRAVISDESESNDLGNRI 618
+ W G IGF + F + L F G +
Sbjct: 657 LKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK------------------GAKQ 698
Query: 619 GGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSL 678
G + GS K E+ D + G VL +
Sbjct: 699 KGEILVFRRGSLKRAKKAGETSASNKNDI------------------EAGEVLGSTDLTD 740
Query: 679 TFDEVTYSVDMPKEMKL-----------QGILEDKLMLLNGVSGAFRPGVLTALMGVSGA 727
D+V DM KE I ++K ++LN V G +PG LTALMG SGA
Sbjct: 741 ESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGA 800
Query: 728 GKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYS 787
GKTTL++VLA R T G ITG + +F R GY +Q D+H P TV ESL +S
Sbjct: 801 GKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFS 860
Query: 788 AWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVAN 847
A+LR P V + ++EE+++L+E+ ++VG+PGE GL+ EQRKRLTI VELVA
Sbjct: 861 AYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAK 919
Query: 848 P-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE------- 899
P ++F+DEPTSGLD++ A + + +R D G+ ++CTIHQPS +FE FD
Sbjct: 920 PKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979
Query: 900 --------------------GIPGVENIKDGYNPATWMLEVTAKSQELTLEIDFTDIYKG 939
G + NPA WMLEV + D+ ++++
Sbjct: 980 GQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRN 1039
Query: 940 SELYRRNKALIEELSRPAPGSKDLYFPTH---YTQSFFMQCVACLWKQHWSYWRNPPYTA 996
S Y+ K ++ L ++D P Y S + Q LW+ YWR P Y
Sbjct: 1040 SSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLY 1099
Query: 997 VRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVER 1056
+F T AL G F+ +GT + Q L N M +++ A + P VA
Sbjct: 1100 SKFFLTIFAALFIGFTFFKVGTSL---QGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRD 1156
Query: 1057 AVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAK-------F 1109
RE+ + +S + + AQ+ +EIPY V +++ I Y +GF W A+K
Sbjct: 1157 LYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERG 1216
Query: 1110 FWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWR 1169
+ LYF+ G M ++ PN AA+++ L + + F G + P +R+P +W
Sbjct: 1217 VLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWI 1276
Query: 1170 WYYWANPVAWTMYGLVASQFGDVEDKMESGETV 1202
+ Y +P + + L+++ DV + E +
Sbjct: 1277 FMYRCSPFTYLVQALLSTGLADVPVTCKVKELL 1309
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 301 bits (772), Expect = 1e-94
Identities = 104/225 (46%), Positives = 130/225 (57%), Gaps = 47/225 (20%)
Query: 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 734
LT+ + Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 735 VLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 794
VLAGRKT G ITG I I+G P + F R +GY EQ D+HSP +TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 795 EVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 854
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 855 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDR 178
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 301 bits (772), Expect = 4e-89
Identities = 171/587 (29%), Positives = 274/587 (46%), Gaps = 61/587 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYPKKQETFTR 763
LL VSG +PG L A+MG SGAGKTTLM+ LA R G +G++ ++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
IS Y +Q+D+ P +TV E L++ A LR+P V + ++ ++E+++ + L + +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 824 LPGE-SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 882
+PG GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 883 VCTIHQPSIDIFESFDE-------------------------GIPGVENIKDGYNPATWM 917
+CTIHQPS ++FE FD+ G P EN YNPA +
Sbjct: 220 ICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPEN----YNPADFY 275
Query: 918 LEVTAKSQELTLEIDFT-----DIYKGSELYRRNKALIEELSRPAPG---SKDLYFPTHY 969
++V A E D + S++ R S A G + Y
Sbjct: 276 VQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGY 335
Query: 970 TQSFFMQCVACLWKQHWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNA 1029
S++ Q A L + S R+P VR + T + A+ G ++ G K Q N
Sbjct: 336 NASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQ---NI 392
Query: 1030 MGSMYTAVFFLGAQYCSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLS 1089
G+++ + + Q V V E VF RE +G+Y Y A+ + E+P +L
Sbjct: 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILP 452
Query: 1090 SVYGIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYG 1149
+++ I Y MIG A F +LF + T +G + + +A V F
Sbjct: 453 ALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVI 512
Query: 1150 LWNVFSGFVIPRTRIPLWWRWYYWANPVAWTMY---GLVASQFGDVEDK----------- 1195
+ +F GF I IP++++W + ++W Y GL+ +Q+ DV++
Sbjct: 513 PFLLFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDVDNIECTSANTTGPC 569
Query: 1196 MESGETV-KQFVRSYFDFKHDFLGVVAVVVAAFAVLFGVLFAVGIKR 1241
SGE + + D D +G+V ++ F +L + I+R
Sbjct: 570 PSSGEVILETLSFRNADLYLDLIGLVILIF-FFRLLAYFALRIRIRR 615
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 232 bits (595), Expect = 3e-70
Identities = 91/223 (40%), Positives = 131/223 (58%), Gaps = 44/223 (19%)
Query: 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 736
+L+F +T +V + LL VSG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 737 AGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEV 796
AGR+TG ++G + I+G P + +F +I GY Q+DI P +TV E+L+++A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 797 DSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 856
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 857 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899
TSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDK 181
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 6e-62
Identities = 146/615 (23%), Positives = 265/615 (43%), Gaps = 87/615 (14%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
++G +GKTTL+ ALA + +K SG V NG +D + +AY+ Q D+ I +T
Sbjct: 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
VRE L F A + M + ++EK + VL
Sbjct: 116 VREHLMFQAHLR-------MPRRVTKKEKRERVD-------------------EVLQA-- 147
Query: 124 LKVLGLEVCDDTLVGDE-MVRGISGGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTF 181
LGL C +T +G V+G+SGG++KR+ E++ P L LF DE ++GLDS +
Sbjct: 148 ---LGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL-LFCDEPTSGLDSFMAY 203
Query: 182 QIVNSIRQNIHILNG--TAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFES 239
+V ++ + T + ++ QP+ E ++LFD IIL+++ ++ Y G + + FF
Sbjct: 204 SVVQVLK---GLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSD 260
Query: 240 MGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYR----FVTAQEFSEAFQSFTVGQKL 295
+G CPE ADF +V + +P ++ ++F +G+ +
Sbjct: 261 LGHPCPENYNPADFYVQVLA-----------VIPGSENESRERIEKICDSFAVSDIGRDM 309
Query: 296 ADELRTPFDKCKSHP------------AALTTKMYGVGKKELLKANISRELLLMKRNSFV 343
K A+ T+ Y + K+ L ++ R+ LL+K
Sbjct: 310 LVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWL--SVLRDPLLLK----- 362
Query: 344 YIFKLTQLSSMALVSMTLFFRTKMHKDSVSD--GGIYVGATFFAVMMTMFNGMSDISMTI 401
+L Q A++ ++ + + V + G ++ F MT N I++
Sbjct: 363 --VRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALF----LFLTNMTFQNVFPVINVFT 416
Query: 402 AKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQF 461
A+LPVF ++ Y AY L I ++P+ + A++ +TY++IG
Sbjct: 417 AELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFL 476
Query: 462 LLLLLVNQMASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYW 521
L+ LV +A++ I+ A + +A++ G ++ FGGF ++ D I ++ W +
Sbjct: 477 FLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSY 536
Query: 522 CSPMMYAQNAIVANEFFGHSWRKFTSNSNETL----GVQVLKSRGFFPHAYWYWLGLGAT 577
S Y ++ N++ + TS + G +L++ F +L L
Sbjct: 537 LSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSF--RNADLYLDLIGL 594
Query: 578 IGFVLLFNIGFTLSL 592
+ + F + +L
Sbjct: 595 VILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 6e-53
Identities = 77/197 (39%), Positives = 116/197 (58%), Gaps = 9/197 (4%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGYPKKQETFTR 763
+LN VS G + A++G SG+GKTTL+D ++GR GG T G I +G P+K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN--PLRQSL 821
Y Q+DI P +TV E+L Y+A LRLP S+ + E + L +L + +L
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRLP-RKSSDAIRKKRVEDVLLRDLALTRIGGNL 140
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R
Sbjct: 141 V-----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRI 195
Query: 882 VVCTIHQPSIDIFESFD 898
V+ TIHQP D+F FD
Sbjct: 196 VILTIHQPRSDLFRLFD 212
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 4e-50
Identities = 131/549 (23%), Positives = 236/549 (42%), Gaps = 76/549 (13%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGNITISGYP----KK 757
+L + G +PG LT ++G G+G +TL+ +A T G+ + G IT G KK
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS-NTDGFHIGVEGVITYDGITPEEIKK 134
Query: 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-EVDSETQKMFIEEIMELVE--- 813
+ Y + D+H P +TV E+L ++A + P D +++ + + I ++
Sbjct: 135 H--YRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY 192
Query: 814 -LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA---AIVM 869
L+ R + VG G+S +RKR++IA + I D T GLD+ A +
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252
Query: 870 RTVRNTVDTGRTVVCTIHQPSIDIFESFDEGIPGVENIKDGYNPAT-------------- 915
+T N +DT T + I+Q S D +E FD+ I E + + PA
Sbjct: 253 KTSANILDT--TPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCP 310
Query: 916 -------WMLEVTAKSQELTLE----------IDFTDIYKGSELYRRNKALIEELSRP-- 956
++ +T+ ++ +F ++ S Y L++E+
Sbjct: 311 DRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEY---AQLMKEIDEYLD 367
Query: 957 ---APGSKDLYFPTH-------------YTQSFFMQCVACLWKQHWSYWRNPPYTAVRFL 1000
+K+ Y +H YT SF MQ CL + NP +T
Sbjct: 368 RCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVF 427
Query: 1001 FTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFC 1060
++AL ++F+++ K D ++ G+++ A+ F + + R +
Sbjct: 428 GNIIMALILSSVFYNL---PKNTSDFYSRGGALFFAILFNAFSSLLEIASMYE-ARPIVE 483
Query: 1061 REKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWYLFFMFFSL 1120
+ + +Y A A ++ EIP+ + S V+ II+Y M+ F A +FF+YL +F
Sbjct: 484 KHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICT 543
Query: 1121 LYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANPVAWT 1180
L + A+T A + + ++++GF IPR + W +W Y+ NP+A+
Sbjct: 544 LAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYA 603
Query: 1181 MYGLVASQF 1189
L+ ++F
Sbjct: 604 FESLMVNEF 612
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 9e-50
Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 7/216 (3%)
Query: 975 MQCVACLWKQHWSYWRNPPYT-AVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSM 1033
Q A L ++ WR+P R + ++AL FGT+F ++ T + N G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDT----SLGGLNRPGLL 56
Query: 1034 YTAVFFLGAQYCSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYG 1093
+ ++ F + + PV ER V RE + +YS Y A++++E+P + + ++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1094 IIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNV 1153
+IVY M+G ++FF +L + + L + G+ A+ P+ A+ + L +
Sbjct: 117 LIVYFMVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 1154 FSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQF 1189
SGF IP +P W +W Y+ NP+ + + L A++F
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 7e-44
Identities = 67/216 (31%), Positives = 107/216 (49%), Gaps = 8/216 (3%)
Query: 324 ELLKANISRELLLMKRNSFV-YIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGAT 382
LKA + RE L R+ + +++L Q MALV T+F D+ G G
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 383 FFAVMMTMFNGMSDISMT-IAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWV 441
FF+++ F+ ++ IS I + V ++ Y+ AY L ++++PIS L+ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 442 FLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAAAGRNMIVAMSFGSFVLLVLFA 501
+ Y+++G + R F L+LLL AS L FIAA + A G +LL L
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 502 FGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEF 537
GF + D + W W Y+ +P+ YA A+ ANEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 1e-40
Identities = 62/196 (31%), Positives = 94/196 (47%), Gaps = 12/196 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQETFTR 763
L+GVS PG + L+G +GAGKTTL+ +LAG +G I + GY K+ R
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRR 78
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
GY Q P +TV E+L + A L + ++E + IEE++EL L V
Sbjct: 79 RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKANKKV- 134
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R G +
Sbjct: 135 ----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTI 190
Query: 884 CTIHQPSIDIFESFDE 899
+ E D
Sbjct: 191 LLSTHILEEAEELCDR 206
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 1e-39
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 138 GDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGT 197
G+E VRGISGG++KRV+ E +V A L D + GLDSST +I+ IR +L T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 198 AVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
+SL Q + E YDLFD +++L + + +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (366), Expect = 1e-35
Identities = 81/241 (33%), Positives = 136/241 (56%), Gaps = 19/241 (7%)
Query: 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLM-----------------LLNGVSGAFRPGV 717
P +L F +V Y V MK +G +++ +LNGV+G PG
Sbjct: 37 PITLKFMDVCYRVKFEN-MKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 718 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPF 777
+ A++G SG+GK+TL++ LAGR G TG I + ++ R G+ Q+DI P
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837
+TV E+L++ + LRLP + + + + E ++ + L +++G G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESF 897
++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V ++HQPS +++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 898 D 898
D
Sbjct: 275 D 275
|
Length = 659 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 3e-34
Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 38/229 (16%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+ +LG SGKTTLL A++G+++ SG++ +NG Q+ AY+ Q D+ +
Sbjct: 35 VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLP 94
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
+TVRETL ++A + R+ I+ DV ++ A
Sbjct: 95 GLTVRETLTYTAILRL------------PRKSSDAIRKKRVEDVLLRDLA---------- 132
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG-EMMVGPALALFMDEISTGLDSST 179
T +G +V+GISGG+++RV+ +++ P + L +DE ++GLDS T
Sbjct: 133 -------------LTRIGGNLVKGISGGERRRVSIAVQLLWDPKV-LILDEPTSGLDSFT 178
Query: 180 TFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
+V+++ Q N ++++ QP + + LFD I+LLS +IVY G
Sbjct: 179 ALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 5e-32
Identities = 135/554 (24%), Positives = 258/554 (46%), Gaps = 76/554 (13%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
+LGP SGK+TLL ALAG++ F+G + N + + +RT +++Q D+ +T
Sbjct: 99 VLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILKRTG-FVTQDDILYPHLT 156
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
VRETL F + L L + + QE ++ +
Sbjct: 157 VRETLVFCS-----------LLRLPK--------------------SLTKQEKILVAESV 185
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQ 182
+ LGL C++T++G+ +RGISGG++KRV+ EM++ P+L L +DE ++GLD++ ++
Sbjct: 186 ISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL-LILDEPTSGLDATAAYR 244
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESMGF 242
+V ++ T V S+ QP+ Y +FD +++LS+ + ++ G + +FES+GF
Sbjct: 245 LVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGF 303
Query: 243 KCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQ-KLADELRT 301
ADFL ++ + Q +E P Q ++ + + K A E+
Sbjct: 304 SPSFPMNPADFLLDLANGVCQTDGVSEREKPN---VKQSLVASYNTLLAPKVKAAIEMSH 360
Query: 302 PFDKCKSHPAALTTKMYGVGKKELLKANISRELLLMKR-------NSFVYIFKLTQLSSM 354
+ +TK + + + ++ +L++R SF ++ Q+ +
Sbjct: 361 FPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESF-NTLRVFQVIAA 419
Query: 355 ALVSMTLFFRTKMHKD--SVSDGGIYVGATFFAVMMTMFNGMSDISMTIAKLP----VFY 408
AL++ +++ H D V D +G FF +++F G+ ++ P +F
Sbjct: 420 ALLAGLMWW----HSDFRDVQD---RLGLLFF---ISIFWGVFPSFNSVFVFPQERAIFV 469
Query: 409 KQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLL--- 465
K+R Y +Y + + +P+ + +++ +TY++ G P +G L+LL
Sbjct: 470 KERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYV 529
Query: 466 LVNQ-MASALFRFIAAAGR-NMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCS 523
LV+Q + AL I A + + IV ++ +FVL GGF + + + W + S
Sbjct: 530 LVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLT-----GGFYVHK--LPSCMAWIKYIS 582
Query: 524 PMMYAQNAIVANEF 537
Y+ ++ ++
Sbjct: 583 TTFYSYRLLINVQY 596
|
Length = 659 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 3e-31
Identities = 53/186 (28%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT- 762
++ +S G + L+G +GAGKTT + +L G R T +G I+GY + +
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 763 -RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
+ GYC Q D +TV E L + A L+ P+ K +E ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKR 130
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 882 VVCTIH 887
++ T H
Sbjct: 185 IILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 7e-31
Identities = 154/629 (24%), Positives = 267/629 (42%), Gaps = 103/629 (16%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYPKKQET 760
KL +L SG +P +T L+G +GKTTL+ LAG+ ++G IT +GY +
Sbjct: 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV 236
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLR---------------------LP-PEVD- 797
+ S Y QND+H +TV E+L +SA + P EVD
Sbjct: 237 PRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDL 296
Query: 798 --------SETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPS 849
+ + ++++ L+ + ++VG G+S Q+KR+T +V
Sbjct: 297 FMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTK 356
Query: 850 IIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEGIPGVE--- 905
+FMDE ++GLD+ +++ ++ V T TV+ ++ QP+ + F+ FD+ I E
Sbjct: 357 TLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416
Query: 906 ------------------NIKDGYNPATWMLEVTAKSQELTLEIDFTDIYKG---SELYR 944
+ A ++ EVT+K + D Y+ SE
Sbjct: 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAE 476
Query: 945 RNKA------LIEELSRPAPGSKD----LYFPTHYTQSFFMQCVACLWKQHWSYWRNPPY 994
R K+ L ELS P S+ L F + M+ + W + W +
Sbjct: 477 RFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPK--MELLKACWDKEWLLMKR--- 531
Query: 995 TAVRFLFTTV----IALTFGTMFW--DMGTKMKRNQDLF--NAMGSMYTAVFFLGAQYCS 1046
A ++F TV +A T+F +M T+ + + L+ + SM +F A+
Sbjct: 532 NAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELAL 591
Query: 1047 SVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIA 1106
+Q + VF +++ + + ++ IP + S V+ +I Y IGF A
Sbjct: 592 MIQRL-----PVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEA 646
Query: 1107 AKFFWYLFFMFF----SLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRT 1162
++FF L +F + F + M + A+V +L + L GF++P+
Sbjct: 647 SRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLL----GGFILPKG 702
Query: 1163 RIPLWWRWYYWANPVAWTMYGLVASQFGDVE--DKMESGETVK--QFVRSYFDFKHD--- 1215
IP WW W YW +P+++ L ++ +KM S + + V + FD D
Sbjct: 703 EIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNW 762
Query: 1216 -FLGVVAVVVAAFAVLFGVLFAVGIKRFN 1243
++GV A++ F +LF VLF + + N
Sbjct: 763 YWIGVGALL--GFTILFNVLFTLALTYLN 789
|
Length = 1470 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 3e-29
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 41/217 (18%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKK 757
K+ +L SG +PG + ++G G+G +TL+ LA R T G + G+I +G P K
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK 75
Query: 758 Q--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
+ E + Y + D+H P +TV E+L ++ +
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------ 111
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
G G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R
Sbjct: 112 -------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 876 VD-TGRTVVCTIHQPSIDIFESFDEGIPGVENIKDGY 911
D T +++Q S +I++ FD+ V + +G
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDK----VLVLYEGR 197
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 3e-29
Identities = 40/65 (61%), Positives = 49/65 (75%)
Query: 542 WRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEKP 601
W K S SNETLG VLKSRG F AYWYW+G+GA +GF +LFNI FTL+LT+LN K
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 602 RAVIS 606
+A++S
Sbjct: 61 QAIVS 65
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 68/189 (35%), Positives = 95/189 (50%), Gaps = 14/189 (7%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQ 758
K L+GVS PG+ L+G +GAGKTTLM +LA G I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ R GY Q P TV E L Y AWL+ + S+ K ++E++ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 879 GRTVVCTIH 887
R V+ + H
Sbjct: 179 DRIVILSTH 187
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 1e-27
Identities = 71/273 (26%), Positives = 119/273 (43%), Gaps = 51/273 (18%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ--RTAAYISQHDVH 58
+ LLGP +GKTTLL LAG L SG + G+ + + + R Y+ Q
Sbjct: 33 IFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSL 89
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
E+TVRE L F AR G+ R E+
Sbjct: 90 YPELTVRENLEFFARLYGLSKEEAE----ERIEE-------------------------- 119
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
L++ GLE ++ VR +SGG K+R++ ++ L +DE ++GLD
Sbjct: 120 ----LLELFGLE-----DKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 179 TTFQIVNSIRQNIHILNGTAVIS--LLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDF 236
+ +I +R+ T ++S +L+ E +L D +I+L+D +I+ +G E + +
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRVIILNDGKIIAEGTPEELKEK 227
Query: 237 FESMGFKC--PERKGVADFLQEVTSRKDQQQYW 267
F G PER +A+ L+ + K +++
Sbjct: 228 FGGKGVIELEPERLELAELLEGLKLVKGEEELA 260
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVH 58
M L+LG P SG +TLL ALA + + + G + YNG EF Y+S+ DVH
Sbjct: 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94
Query: 59 IGEMTVRETLAFSARCQG 76
+TVRETL F+ RC+G
Sbjct: 95 FPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 1e-25
Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 29/205 (14%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---F 761
L+ +S + G ++G +G+GK+TL+ +L G G +G + + G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 762 TRISGYCEQNDIHSP---FV--TVYESLLYSAWLRLPPE---VDSETQKMFIEEIMELVE 813
R G QN P F TV E + + E + E + +EE +ELV
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFG------LENLGLPEEEIEERVEEALELVG 123
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
L LR LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 124 LEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLK 178
Query: 874 NTVDTGRTVVCTIHQPSIDIFESFD 898
G+T++ H + E D
Sbjct: 179 KLKAEGKTIIIVTHDLD-LLLELAD 202
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 1e-22
Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 19/186 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT 762
+L+ +S G + AL G +GAGKTTL +LAG +++ G +I ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERR 70
Query: 763 RISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
+ GY Q+ D +V E LL E+D+ ++ E +++ ++L L++
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLGL-----KELDAGNEQ--AETVLKDLDLYALKERH 123
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
P LS Q++RL IA L++ ++ DEPTSGLD + V +R G+
Sbjct: 124 ---PLS--LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178
Query: 882 VVCTIH 887
V+ H
Sbjct: 179 VIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 1e-22
Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 19/200 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L VS +PG A++G +GAGK+TL+ + G + T +G+I + G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 764 ISGYCEQN---DIHSPFVTVYESLLYSAWLRLPP-EVDSETQKMFIEEIMELVELNPLRQ 819
I GY Q D P ++V + +L + S+ K ++E +E V L+ L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD 127
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 879
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R G
Sbjct: 128 RQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG 182
Query: 880 RTVVCTIHQPSIDIFESFDE 899
T++ H + + E FD
Sbjct: 183 MTILVVTHDLGL-VLEYFDR 201
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 1e-22
Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 761
+L+ +S + G +T ++G +G+GK+TL+ LAG + G + I+ K+
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE--L 74
Query: 762 TRISGYCEQNDIHSPFVTVYESLL-----YSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
+ Y Q+ +TVYE +L + P + D E +EE +EL+ L
Sbjct: 75 AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE----IVEEALELLGLEH 130
Query: 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-T 875
L V LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 131 LADRPV-----DELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN 185
Query: 876 VDTGRTVVCTIHQP 889
+ G TVV +H
Sbjct: 186 REKGLTVVMVLHDL 199
|
Length = 258 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 4e-22
Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 23/225 (10%)
Query: 694 KLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 750
K+ G+ +K+ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 751 ISGYPKKQET-FTRIS-GYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIE 806
++ +K+ R G+ QN + P +TV E++ + + +K E
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAG---KSAGRRKRAAE 123
Query: 807 EIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
E++E++ L L P E LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 124 ELLEVLGLEDRL--LKKKPSE--LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 867 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDEGIPGVENIKDG 910
V+ +R + G+T++ H P ++ + D I +KDG
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVI----ELKDG 218
|
Length = 226 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 8e-22
Identities = 63/195 (32%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L GVS + G A++G SG+GK+TL+++L G R T G + IS +K+
Sbjct: 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79
Query: 763 R---ISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL 817
R I G+ Q+ + P +T E++ LP + +K E EL+E L
Sbjct: 80 RRRHI-GFVFQS--FNLLPDLTALENVE------LPLLLAGVPKKERRERAEELLERVGL 130
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 876
L P E LS Q++R+ IA L +P II DEPT LD+ VM +R
Sbjct: 131 GDRLNHYPSE--LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNK 188
Query: 877 DTGRTVVCTIHQPSI 891
+ G T+V H P +
Sbjct: 189 EAGTTIVVVTHDPEL 203
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 93.6 bits (234), Expect = 8e-22
Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 52/186 (27%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 761
L+ +S G + L+G +GAGKTTL+ ++ G + G I + G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS----GEIKVLGKDIKKEPEEV 71
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R GY + +TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 882 VVCTIH 887
++ + H
Sbjct: 148 ILLSSH 153
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-21
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 26/194 (13%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-KKQETFTR 763
+L +S + G +TAL+G +GAGK+TL+ + G +G I I G P +K+ R
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLR 76
Query: 764 ISGYCEQNDIHSPF-----VTVYE---SLLYSA--WLRLPPEVDSETQKMFIEEIMELVE 813
I GY Q S +TV + Y W R + D E ++E +E V
Sbjct: 77 I-GYVPQ---KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK----VDEALERVG 128
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
+ LR +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 129 MEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLK 183
Query: 874 NTVDTGRTVVCTIH 887
G+TV+ H
Sbjct: 184 ELRQEGKTVLMVTH 197
|
Length = 254 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 1e-19
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+T ++GP +GK+TLL ALAG+ L SG V NG +D+ ++ Y+ Q D+
Sbjct: 37 LTAIMGPSGAGKSTLLNALAGRRTG-LGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHP 95
Query: 61 EMTVRETLAFSARCQGV 77
+TVRETL F+A+ +G+
Sbjct: 96 TLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 2e-19
Identities = 46/187 (24%), Positives = 70/187 (37%), Gaps = 46/187 (24%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
LN VS G + AL+G SG+GK+TL+ +AG G I ++ +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
R G Q+ P +TV E++
Sbjct: 76 RRIGMVFQDFALFPHLTVLENIAL------------------------------------ 99
Query: 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 881
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G T
Sbjct: 100 ------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT 153
Query: 882 VVCTIHQ 888
VV H
Sbjct: 154 VVLVTHD 160
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 3e-19
Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 16/190 (8%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 761
L+ +S PG AL+G SG GKTTL+ ++AG R G I ++G P ++
Sbjct: 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER--- 71
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
I G Q+ P +TV E++ + LR P+ + + + E++ELV L L
Sbjct: 72 RNI-GMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRELLELVGLEGLLNRY 127
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGR 880
LS Q++R+ +A L PS++ +DEP S LDA+ + ++ + G
Sbjct: 128 P-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGI 182
Query: 881 TVVCTIHQPS 890
T + H
Sbjct: 183 TTIYVTHDQE 192
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 4e-19
Identities = 44/189 (23%), Positives = 73/189 (38%), Gaps = 48/189 (25%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 761
+L+ +S + G + ++G +GAGK+TL+ LAG + + G I ++ K+
Sbjct: 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE--L 71
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R Y Q +EL+ L L
Sbjct: 72 ARKIAYVPQ-------------------------------------ALELLGLAHLADRP 94
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 880
+ LS +R+R+ +A L P I+ +DEPTS LD ++ +R G+
Sbjct: 95 F-----NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGK 149
Query: 881 TVVCTIHQP 889
TVV +H
Sbjct: 150 TVVMVLHDL 158
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 7e-19
Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 20/196 (10%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKK 757
+L G++ A G + AL+G +GAGK+TL+ L G R G + + Y +K
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 758 QETFTRIS-GYCEQN---DIHSPFVTVYESLLYSAW-LRLPP-EVDSETQKMFIEEIMEL 811
R G Q+ + + V + + + L L EV+ + E +
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEAEVERR-----VREALTA 114
Query: 812 VELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
V + LR+ LS ++KR+ IA + P ++ +DEPT+GLD ++
Sbjct: 115 VGASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI 169
Query: 872 VRNTVDTGRTVVCTIH 887
+R G TVV + H
Sbjct: 170 LRRLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 7e-19
Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 32/221 (14%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY------PKKQE 759
L VS + PG AL+G SGAGK+TL+ L G +G++ I G K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT--SGSVLIDGTDINKLKGKALR 74
Query: 760 TFTRISGYCEQNDIHSPFVTVYESLL---------YSAWLRLPPEVDSETQKMFIEEIME 810
R G Q ++V E++L + + L P+ E Q+ +E
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK--EEKQRAL--AALE 130
Query: 811 LVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
V L LS Q++R+ IA L+ P +I DEP + LD ++ VM
Sbjct: 131 RVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 871 TVRN-TVDTGRTVVCTIHQPSIDIFESFDEGIPGVENIKDG 910
++ + G TV+ ++HQ D+ + + I G +KDG
Sbjct: 186 LLKRINREEGITVIVSLHQV--DLAREYADRIVG---LKDG 221
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 1e-18
Identities = 66/249 (26%), Positives = 104/249 (41%), Gaps = 43/249 (17%)
Query: 663 QPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALM 722
+ K + LP + F+ V++ D +L +S PG A++
Sbjct: 457 EGDKTLIHLPKLQGEIEFENVSFRYG-----------PDDPPVLEDLSLEIPPGEKVAIV 505
Query: 723 GVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPF 777
G SG+GK+TL+ +L G Y G I + G + R GY Q+
Sbjct: 506 GRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDP----- 556
Query: 778 VTVYESLLYSAWLR-----LPPEVDSET--QKMFIEEIMELVELNPLR-QSLVGLPGESG 829
L+S +R PE E + + E +E P+ + VG G +
Sbjct: 557 ------FLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGG-AN 609
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 889
LS QR+RL +A L++ P I+ +DE TS LD AI+++ + + GRTV+ H+
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVIIIAHRL 668
Query: 890 SIDIFESFD 898
S S D
Sbjct: 669 S--TIRSAD 675
|
Length = 709 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 1e-18
Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 27/202 (13%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK--- 756
D L+ ++ + G LTAL+G SGAGK+TL+++L G G I ++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 757 KQETFTRISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE 813
E + + + QN P++ T+ E++ L S+ + I ++
Sbjct: 389 SPEAWRKQISWVSQN----PYLFAGTIRENI------LLARPDASDEE---IIAALDQAG 435
Query: 814 LNPLRQSLVGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
L GL +GLS Q +RL +A L++ S++ +DEPT+ LDA I+
Sbjct: 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495
Query: 869 MRTVRNTVDTGRTVVCTIHQPS 890
++ ++ +TV+ H+
Sbjct: 496 LQALQELAK-QKTVLVITHRLE 516
|
Length = 559 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 2e-18
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 14/185 (7%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQETFT 762
++GVS +PG +T L+G +GAGKTT + +LAG G T+ G+ + E
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVVKEPAEARR 78
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
R+ G+ + +T E+L Y A L + + +EE+ + + + L V
Sbjct: 79 RL-GFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV 134
Query: 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 882
G G ST R+++ IA LV +P ++ +DEPT+GLD A + +R G+ +
Sbjct: 135 G-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCI 189
Query: 883 VCTIH 887
+ + H
Sbjct: 190 LFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 3e-18
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 36/198 (18%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ---- 758
L+ VS + RPG + L+G +GAGKTTL ++++G R T G + I+G P +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 759 ---ETFTRISGYCEQNDIHSPF--VTVYESLL--------YSAWLRLPPEVDSETQKMFI 805
TF Q F +TV E+++ L + E ++
Sbjct: 76 GIGRTF--------QIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARER-A 124
Query: 806 EEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 865
EE++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 125 EELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEET 179
Query: 866 AIVMRTVRNTVDTGRTVV 883
+ +R + G TV+
Sbjct: 180 EELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 4e-18
Identities = 33/86 (38%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 143 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISL 202
RG+SGG++KRV+ +V LF+DE ++GLDSS+ Q+++ +R+ + T + S+
Sbjct: 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRR-LADTGRTIICSI 168
Query: 203 LQPAPETYDLFDDIILLSDAQIVYQG 228
QP+ E ++LFD ++LLS +++Y G
Sbjct: 169 HQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 4e-18
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 30/193 (15%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 761
++GV+ R G + +G +GAGKTT + +L R T G ++GY ++
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS----GTARVAGYDVVREPRKV 64
Query: 762 TRISGYCEQNDIHSPFVTVYESL-------LYSAWLRLPPEVDSETQKMFIEEIMELVEL 814
R G Q + +V E L + LP + E EE++EL EL
Sbjct: 65 RRSIGIVPQ------YASVDEDLTGRENLEMMGRLYGLPKDEAEER----AEELLELFEL 114
Query: 815 NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
VG S R+RL IA L+ P ++F+DEPT+GLD R + +R
Sbjct: 115 GEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRA 169
Query: 875 TVDTGRTVVCTIH 887
+ G T++ T H
Sbjct: 170 LKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 6e-18
Identities = 56/201 (27%), Positives = 85/201 (42%), Gaps = 33/201 (16%)
Query: 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 758
L +N VS RPG + L+G +GAGKTTL +++ G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 759 ------ETFTRISGYCEQNDIHSPFVTVYESLL--------YSAWLRLPPEVDSETQKMF 804
TF Q P +TV E++ S L P E +
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE 128
Query: 805 I-EEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
E++E V L L G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 129 RARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPE 183
Query: 864 AAAIVMRTVRNTVDT-GRTVV 883
+ +R D G T++
Sbjct: 184 ETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 6e-18
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 19/204 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFT--- 762
L VS G L+G +G+GK+TL+ +L G +G + + G E
Sbjct: 20 LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSSEKSLLEL 77
Query: 763 -RISGYCEQNDIHSPFV-TVYESLLYSA-WLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
+ G QN F TV + + + L LP E E + E +ELV L L
Sbjct: 78 RQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEE----RVAEALELVGLEELLD 133
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 878
LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++ +
Sbjct: 134 RPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEG 188
Query: 879 GRTVVCTIHQPSIDIFESFDEGIP 902
G+T++ H + E D +
Sbjct: 189 GKTIIIVTHDLE-LVLEYADRVVV 211
|
Length = 235 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 39/228 (17%)
Query: 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 735
+ F V++S ++ L+ VS R G A++G G+GK+TL+ +
Sbjct: 1 GRIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKL 49
Query: 736 LAG--RKTGGYI-TGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRL 792
LAG + T G + I + I GY Q D+ + T+ +++ A
Sbjct: 50 LAGLYKPTSGSVLLDGTDIRQLDP-ADLRRNI-GYVPQ-DVTLFYGTLRDNITLGA---- 102
Query: 793 PPEVDSETQKMFIEEIMELVELNPLRQSLVGLP-------GESG--LSTEQRKRLTIAVE 843
P D E I+ EL + + P GE G LS QR+ + +A
Sbjct: 103 -PLADDE-------RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154
Query: 844 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
L+ +P I+ +DEPTS +D + + +R + +T++ H+PS+
Sbjct: 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSL 201
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 1e-17
Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 34/231 (14%)
Query: 670 VLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGK 729
V SL F V+ + + L VS PG AL+G SGAGK
Sbjct: 314 VTAAPAPSLEFSGVSVA------------YPGRRPALRPVSFTVPPGERVALVGPSGAGK 361
Query: 730 TTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLY 786
+TL+++L G T G I + ++ +++ + Q+ PF+ ++
Sbjct: 362 STLLNLLLGFVDPTEGSIAVNGVPLADAD--ADSWRDQIAWVPQH----PFL-FAGTIAE 414
Query: 787 SAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL-VGL-----PGESGLSTEQRKRLTI 840
+ L P D+E I E +E L+ +L GL G +GLS Q +RL +
Sbjct: 415 NIRLARPDASDAE-----IREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLAL 469
Query: 841 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
A + + ++ +DEPT+ LDA A V+ +R + GRTV+ H+ ++
Sbjct: 470 ARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-17
Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 32/198 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQETF 761
L GV R G + A++G SG+GK+TL+ ++ G R G I G +
Sbjct: 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75
Query: 762 TRISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
R G Q + + TV+E++ + LR E ++ EEI E+V
Sbjct: 76 RRRMGMLFQSGALFDSL-----TVFENVAF--PLR-------EHTRLSEEEIREIVLE-- 119
Query: 817 LRQSLVGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
+ VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+ ++
Sbjct: 120 -KLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178
Query: 872 VRNTVDT-GRTVVCTIHQ 888
+R+ G T + H
Sbjct: 179 IRSLKKELGLTSIMVTHD 196
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT- 762
+ GVS R G + L+G +GAGKTT + +L + T G T++G+ +E
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREV 71
Query: 763 -RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R G Q+ +T +E+L A L V ++ I+E+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 880
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 V-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 881 TVVCTIH 887
T++ T H
Sbjct: 184 TILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L+ +S + G + +G +GAGKTT M ++ G + G IT Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
I E + P +T E+L A L + I+E++++V L + V
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKDSAKKKVK 125
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 884 CTIHQ 888
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 2e-17
Identities = 65/193 (33%), Positives = 93/193 (48%), Gaps = 22/193 (11%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETFT 762
L+GVS PG A++G SG+GK+TL+ LAG + G +T+ G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSLDQDEVR 408
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
R C Q D H TV E+L + P+ E + +E V L ++L
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATDEE----LWAALERVGLADWLRALP 458
Query: 823 -GLP---GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
GL GE G LS +R+RL +A L+A+ I+ +DEPT LDA A ++ +
Sbjct: 459 DGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-A 517
Query: 877 DTGRTVVCTIHQP 889
+GRTVV H
Sbjct: 518 LSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 2e-17
Identities = 65/254 (25%), Positives = 104/254 (40%), Gaps = 51/254 (20%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 760
L ++ PG A++G SGAGK+TL+ + + G I +IT K ++
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 761 FTRISGYCEQNDIHSPFVTVYESLL---------YSAWLRLPPEVDSETQKMFIEEIMEL 811
RI G Q+ +TV E++L + + L E D E +
Sbjct: 78 RRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEED-------KERALSA 129
Query: 812 VELNPLRQSLVGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
+E VGL + LS Q++R+ IA L P +I DEP + LD + +
Sbjct: 130 LER-------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSK 182
Query: 867 IVMRTVRN-TVDTGRTVVCTIHQPSIDIFESFDEGIPGVENIKDGYNPATWMLEVT--AK 923
VM ++ + G TV+ +HQ +D+ + + + I G +K G E+
Sbjct: 183 QVMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVG---LKAG--------EIVFDGA 229
Query: 924 SQELTLEIDFTDIY 937
EL E IY
Sbjct: 230 PSELDDE-VLRHIY 242
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 5e-17
Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 55/196 (28%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAA-----YISQHDVH 58
LLG +GKTT L L G+L SG NG+ + R AA Y Q D
Sbjct: 33 LLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSI---RTDRKAARQSLGYCPQFDAL 86
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
E+TVRE L F AR +G+ E
Sbjct: 87 FDELTVREHLRFYARLKGLPKS----------------------------------EIKE 112
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDS 177
+ L+VLGL + +SGG K++++ ++G P++ L +DE ++GLD
Sbjct: 113 EVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGGPSV-LLLDEPTSGLDP 166
Query: 178 STT---FQIVNSIRQN 190
++ + ++ +R+
Sbjct: 167 ASRRAIWDLILEVRKG 182
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 5e-17
Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 12/190 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGN-ITISGYPKKQETFT 762
L+G++ + G L+G SGAGK+TL+ ++ + T G I N +S + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 763 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R G Q+ P VYE++ EV + + + +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVA------FALEVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
LP + LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 882 VVCTIHQPSI 891
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 34/181 (18%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFT 762
L +S G +TAL+G SG GK+TL+ +L G G + + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 763 RIS-----GYCEQNDIHSPFV-TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
+ G Q +PF ++Y+++ Y L + + EE+ E VE
Sbjct: 76 VLELRRRVGMVFQKP--NPFPGSIYDNVAYGLRLH---GIKLK------EELDERVE--- 121
Query: 817 LRQSL--VGLPGE-------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 867
++L L E GLS Q++RL +A L P ++ +DEPTS LD + A
Sbjct: 122 --EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAK 179
Query: 868 V 868
+
Sbjct: 180 I 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-16
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
LR+ + +P LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R
Sbjct: 70 ELRRRIGYVPQ---LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL 126
Query: 876 VDTGRTVVCTIHQPS 890
+ GRTV+ H P
Sbjct: 127 AEEGRTVIIVTHDPE 141
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 71/250 (28%), Positives = 110/250 (44%), Gaps = 41/250 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETFT 762
L V+ G + A++G SGAGK+TL+ L G T G I N I+ K+
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 763 RIS-GYCEQNDIHSPFVTVYESLL-----YSAWLR----LPPEVDSETQKMFIEEIMELV 812
R G Q P ++V E++L Y++ R L + E + ++ L
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK---EDKAQALDA---LE 133
Query: 813 ELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 872
+ L ++ S LS Q++R+ IA LV P II DEP + LD +A VM +
Sbjct: 134 RVGILDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDIL 190
Query: 873 R--NTVDTGRTVVCTIHQPSIDIFESFDEGIPGVENIKDGYNPATWMLEVT--AKSQELT 928
+ N D G TV+ +HQ +D+ + + + I G +K G + + ELT
Sbjct: 191 KDINQED-GITVIVNLHQ--VDLAKKYADRIIG---LKAG--------RIVFDGPASELT 236
Query: 929 LEIDFTDIYK 938
E +IY
Sbjct: 237 DE-ALDEIYG 245
|
Length = 258 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 2e-16
Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 709 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQETFTR-IS 765
VS G +T L+G +GAGKTTL+ ++A +G +TI G + R I
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRRKIG 78
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825
+ +++ +T E+L Y A L + + K I E+ + ++L VG
Sbjct: 79 VLFGERGLYAR-LTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-- 132
Query: 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 885
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+ +
Sbjct: 133 ---EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189
Query: 886 IH 887
H
Sbjct: 190 SH 191
|
Length = 245 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 77.4 bits (192), Expect = 3e-16
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 52/189 (27%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 761
+L VS +PG A++G SG+GK+TL+ +L T G I + + E+
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD--LESL 74
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
+ Y Q + L+S +R E I
Sbjct: 75 RKNIAYVPQ-----------DPFLFSGTIR--------------ENI------------- 96
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R + G+T
Sbjct: 97 --------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAKGKT 147
Query: 882 VVCTIHQPS 890
V+ H+ S
Sbjct: 148 VIVIAHRLS 156
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGYPKKQE---T 760
L+ VS RPG AL+G +GAGK+TL +L T Y+ G I+++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
R+ +Q + ++V ++L Y A L ++ + I E++ + L
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 879
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 880 RTVVCTIH 887
+V+ H
Sbjct: 184 LSVLWATH 191
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNITISGYPKKQETF 761
L+ VS + + G L+G SG+GK+TL + G + T G I G + + ++
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 762 TRISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
+ Q+ + S P +T+ E + + E +K + ++ V L
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLPEEVL 139
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
+ P E LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 140 NR--YPHE--LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 23/197 (11%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQET 760
+L+ ++ G + A++G SG+GK+TL++++ + G Y+ G T KK
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 761 FTRIS-GYCEQNDIHSPFV-----TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL 814
F R GY QN F TV E+L L L + S+ +K E+ E +E
Sbjct: 73 FRREKLGYLFQN-----FALIENETVEENLD----LGLKYKKLSKKEKR--EKKKEALEK 121
Query: 815 NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
L L E LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 122 VGLNLKLKQKIYE--LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
Query: 875 TVDTGRTVVCTIHQPSI 891
D G+T++ H P +
Sbjct: 180 LNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 15/164 (9%)
Query: 715 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---ETFTRISGYCE 769
+T + G SGAGK+TL+ +AG + GG I N T+ +K+ R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 770 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829
Q P + V E+L + L + + E ++ ++E+++L+ L+ L
Sbjct: 82 QQYALFPHLNVRENLAFG----LKRKRNRE-DRISVDELLDLLGLDHLLNRYPA-----Q 131
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
LS +++R+ +A L A P ++ +DEP S LD ++ ++
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELK 175
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 3e-15
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 760
++ VS R G L+G SG+GK+TL +LAG + G I ++ ++G ++
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 761 FTRISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ Q+ S P +TV + L LR+ ++ + E++ELV L P
Sbjct: 367 RRIQMVF--QDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP-- 420
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
+ L P E LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 421 EFLDRYPHE--LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 8e-15
Identities = 60/218 (27%), Positives = 90/218 (41%), Gaps = 36/218 (16%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT 762
L +G+S G L G +G+GKTTL+ ++AG G I
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK-------LDGGDIDDP 69
Query: 763 RISGYC----EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
++ C +N + P +TV E+L + A E+D I +E V L PL
Sbjct: 70 DVAEACHYLGHRNAMK-PALTVAENLEFWAAFLGGEELD-------IAAALEAVGLAPL- 120
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R +
Sbjct: 121 ---AHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176
Query: 879 GRTVVCTIHQPSIDIFESFDEGIPGVENIK-DGYNPAT 915
G V+ H P G+PG + +
Sbjct: 177 GGIVIAATHIP---------LGLPGARELDLGPFAAED 205
|
Length = 207 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 63/213 (29%), Positives = 106/213 (49%), Gaps = 20/213 (9%)
Query: 688 DMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGY 744
++ K K + ++ED VS G + L+G +GAGKTT ++ G R G
Sbjct: 8 NLAKAYKGRRVVED-------VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI 60
Query: 745 ITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMF 804
I + IS P I GY Q ++VY++L+ A L++ ++ +E ++
Sbjct: 61 IIDDEDISLLPLHARARRGI-GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDR 117
Query: 805 IEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 864
E+ME + LR S+ G+S LS +R+R+ IA L ANP I +DEP +G+D +
Sbjct: 118 ANELMEEFHIEHLRDSM----GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIS 172
Query: 865 AAIVMRTVRNTVDTGRTVVCTIH--QPSIDIFE 895
+ R + + D+G V+ T H + ++ + E
Sbjct: 173 VIDIKRIIEHLRDSGLGVLITDHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 23/195 (11%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 761
LL+GVS RPG + A++G +GAGK+TL+ L+G G +T + ++ +P ++
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 762 TRISGYCEQNDIHS-PFVTVYESLLYSAWLRLPPEVDSET--QKMFIEEIMELVELNPLR 818
R QN + PF TV E + R+P E + + + +L+ L
Sbjct: 76 HR--AVLPQNSSLAFPF-TVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTV 872
LS +++R+ +A L V + +F+DEPTS LD +R
Sbjct: 130 GRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 873 RNTVDTGRTVVCTIH 887
R G V+ +H
Sbjct: 185 RQLAREGGAVLAVLH 199
|
Length = 259 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
+NGVS + + G + L+G +GAGKTT ++ G + G I I+ P +
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 763 RISGYCEQNDIHSPF--VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
I GY Q S F +TV E++L +R + + ++ +EE++E + LR+S
Sbjct: 76 GI-GYLPQE--ASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKS 129
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 130 KA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGI 184
Query: 881 TVVCTIH 887
V+ T H
Sbjct: 185 GVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-14
Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L V+ G L+G SG GK+TL+ ++AG T G I ++ P ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLR-LPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R QN P +TVYE++ + LR +P + ++E+ +L+ L L
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR----VKEVAKLLGLEHLLNRK 130
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
LS QR+R+ +A LV P + +DEP S LDA+
Sbjct: 131 P-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
|
Length = 338 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 21/177 (11%)
Query: 694 KLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITI 751
+ G + LN VS G ++G SG+GK+TL +LAG + + +G+I +
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILL 66
Query: 752 SG--YPKKQET--FTRISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFI 805
G K+ F R Q+ S P TV L P + Q+ I
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR---PHGLSKSQQR--I 121
Query: 806 EEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
E+++ V L P L P E LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 122 AELLDQVGLPPSF--LDRRPHE--LSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-14
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 14/172 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
++ +S + G L+G SG GKTTL+ ++AG + + G I I+ P ++
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK---- 76
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
R G Q+ P +TV E++ + L++ ++ K +EE +ELV L
Sbjct: 77 RPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFADRKP 134
Query: 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++
Sbjct: 135 -----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKE 181
|
Length = 352 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-14
Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 761
+++GV PG LT L+G +G+GK+TL+ +LAG R G + + + G ++
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA- 74
Query: 762 TRISGYCEQNDIHSPFVTVYESLLY------SAWLRLPPEVDSETQKMFIEEIMELVELN 815
R EQ+ + +TV + + S W P + + + EL+
Sbjct: 75 -RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRA-----LARTELS 128
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
L + S LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 129 HLADRDM-----STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183
Query: 876 VDTGRTVVCTIH 887
TG TVV +H
Sbjct: 184 AATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 3e-14
Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 28/198 (14%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L ++ + +PG A++G +GAGKTTL+++L G I I I +K +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK--SLR 76
Query: 763 RISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
+ G Q F+ T+ E++ + E + +
Sbjct: 77 SMIGVVLQ----DTFLFSGTIMENIRLG---------RPNATDEEVIEAAKEAGAHDFIM 123
Query: 820 SLV-GL---PGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
L G GE+G LS +R+ L IA ++ +P I+ +DE TS +D ++ +
Sbjct: 124 KLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALE 183
Query: 874 NTVDTGRTVVCTIHQPSI 891
+ GRT + H+ S
Sbjct: 184 KLMK-GRTSIIIAHRLST 200
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 59/197 (29%), Positives = 88/197 (44%), Gaps = 29/197 (14%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---TGNITISGYPKKQET 760
L+GV G + A++G SG+GK+TL+ ++ G R G I +I + E
Sbjct: 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83
Query: 761 FTRISGYCEQNDIHSPFVTVYES--LLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
R+ G Q +TV+E+ +LP I ELV +
Sbjct: 84 RKRM-GVLFQQGALFSSLTVFENVAFPLREHTKLPES-----------LIRELVLMK--- 128
Query: 819 QSLVGLPGE------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 872
LVGL G S LS RKR+ +A + +P ++F+DEPTSGLD +A ++ +
Sbjct: 129 LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELI 188
Query: 873 RNTVDT-GRTVVCTIHQ 888
R D G TV+ H
Sbjct: 189 RELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 5e-14
Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 25/187 (13%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 760
L GVS G + AL+G +GAGKTTL+ + G G I +IT
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT------GLPP 69
Query: 761 FTRIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV-ELNP 816
R GY + P +TV E+LL A+ R + + +E + EL L
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKE 124
Query: 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
R+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R
Sbjct: 125 RRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 877 DTGRTVV 883
D G T++
Sbjct: 180 DEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 6e-14
Identities = 47/192 (24%), Positives = 70/192 (36%), Gaps = 55/192 (28%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---E 759
+L VS + PG A++G SG+GK+TL ++ G R T G + + G Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDGADISQWDPN 72
Query: 760 TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
GY Q+D ++F I E +
Sbjct: 73 ELGDHVGYLPQDD-----------------------------ELFSGSIAENI------- 96
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 879
LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 97 ----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 880 RTVVCTIHQPSI 891
T + H+P
Sbjct: 147 ATRIVIAHRPET 158
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 7e-14
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 758
+ ML G+S G + G +G GKTTL+ +LAG R G + N T +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ R Y P ++ E+L + W + IE+ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLTGFE 121
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 879 GRTVVCTIHQP 889
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 7e-14
Identities = 54/188 (28%), Positives = 97/188 (51%), Gaps = 16/188 (8%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQET 760
++++G+S + G L+G +GAGKTT + +L G G+I++ G P + +
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHA 78
Query: 761 FTRISGYCEQNDIHSPFVTVYESLL-YSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
R+ G Q D P TV E+LL + + L + + + ++E +L
Sbjct: 79 RQRV-GVVPQFDNLDPDFTVRENLLVFGRYFGLS----AAAARALVPPLLEFAKLENKAD 133
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 879
+ VG LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ + G
Sbjct: 134 AKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARG 188
Query: 880 RTVVCTIH 887
+T++ T H
Sbjct: 189 KTILLTTH 196
|
Length = 306 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 65/239 (27%), Positives = 102/239 (42%), Gaps = 52/239 (21%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDVHIG 60
+LGP SGK+TLL LAG L K K SG V +G + P+ + AY+ Q
Sbjct: 33 ILGPNGSGKSTLLKCLAGLL--KPK-SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
+TV E + G P ++ +E +
Sbjct: 90 GLTVYELVLL------------------------GRYP------HLGLFGRPSKEDEEIV 119
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGL 175
+ L++LGLE D V + +SGG+++RV ++ ALA L +DE ++ L
Sbjct: 120 EEALELLGLEHLADRPVDE-----LSGGERQRV-----LIARALAQETPILLLDEPTSHL 169
Query: 176 DSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234
D + +++ +R ++ G V+ +L D +ILL D +IV QG E VL
Sbjct: 170 DIAHQIEVLELLRD-LNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 15/200 (7%)
Query: 692 EMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNI 749
E + + L + +S G + G +GAGKTTL+ +LAG R G +
Sbjct: 4 EAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YW 61
Query: 750 TISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIM 809
+E++ + Y +T E+L + W R ++ T I E +
Sbjct: 62 QGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEAL 115
Query: 810 ELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
V L L VG LS Q++R+ +A ++ + +DEP + LD A++
Sbjct: 116 AQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLT 170
Query: 870 RTVRNTVDTGRTVVCTIHQP 889
+ G V+ T HQP
Sbjct: 171 ALMAAHAAQGGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 1e-13
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 40/203 (19%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQ--- 758
LL+ VS RPG + A++G +GAGK+TL+ L+ G ++ G + ++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 759 -ETFTRISGYCEQNDIHSPFVTVYE--SLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
E R + + + + PF TV E ++ + E D+ + + V+L
Sbjct: 72 AELARRRAVLPQHSSLSFPF-TVEEVVAMGRAPHGLSRAEDDAL-----VAAALAQVDLA 125
Query: 816 PLR----QSLVGLPGESGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAA 865
L L G GE +QR +L A L P + +DEPTS LD
Sbjct: 126 HLAGRDYPQLSG--GE-----QQRVQL--ARVLAQLWEPDGPPRWLLLDEPTSALDLAHQ 176
Query: 866 AIVMRTVRN-TVDTGRTVVCTIH 887
V+R R + G V+ +H
Sbjct: 177 HHVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 31/188 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L ++ + G A++G SG GK+TL+ ++AG + T G + + G P
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG----EVLLDGRPVTGPGPDI 74
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
GY Q D P++TV +++ L E+ +++ E EL+EL VG
Sbjct: 75 --GYVFQEDALLPWLTVLDNVA------LGLELRGKSKAEARERAKELLEL-------VG 119
Query: 824 L-------PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
L P + LS R+R+ IA L P ++ +DEP LDA + +
Sbjct: 120 LAGFEDKYPHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLW 177
Query: 877 -DTGRTVV 883
+T +TV+
Sbjct: 178 EETRKTVL 185
|
Length = 248 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 2e-13
Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 31/188 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L +S + G AL+G SG GK+TL+ ++AG R T G + + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLVDGEPVTGPGPDR 75
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
GY Q D P++TV +++ L L +E + E EL+EL VG
Sbjct: 76 --GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEAR----ERAEELLEL-------VG 120
Query: 824 L-------PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
L P + LS R+R+ +A L +P ++ +DEP S LDA + + +
Sbjct: 121 LSGFENAYPHQ--LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIW 178
Query: 877 -DTGRTVV 883
+TG+TV+
Sbjct: 179 RETGKTVL 186
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 59/208 (28%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISGYPKK 757
E K +L GV+ + G + A+MG +G+GK+TL + G Y +T G I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDG---- 67
Query: 758 QETFTRISGYCE----------QNDIHSPFVTVYESLLYSAW--LRLPPEVDSETQKMFI 805
E +S E Q + P VT L +A R + E K +
Sbjct: 68 -EDILELSPD-ERARAGIFLAFQYPVEIPGVTN-SDFLRAAMNARRGARGILPEFIK-EL 123
Query: 806 EEIMELVELNP--LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+E EL+ L+ L + + E G S ++KR I L+ P + +DEP SGLD
Sbjct: 124 KEKAELLGLDEEFLERYV----NE-GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDID 178
Query: 864 AAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
A IV + + GR V+ H +
Sbjct: 179 ALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 32/204 (15%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYP--- 755
D ++L+ +S +PG + ++G SG+GK+TL ++ Y+ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 756 KKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
R G Q E++L++ +R + M +E ++E +L
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 816 PLRQSLVGLP-------GE--SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
+ LP GE +GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH 175
Query: 867 IVMRTVRNTVDTGRTVVCTIHQPS 890
+MR + + GRTV+ H+ S
Sbjct: 176 AIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 21/188 (11%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNITISGYPKKQETF 761
L+ +S + G + L+G +GAGKTT + ++ G I +G + G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLR-LPPEVDSETQKMFIEEIMELVELNPLRQS 820
RI GY + P + V + L+Y A L+ L E E ++ I+E +E +EL+
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKE---EARRR-IDEWLERLELSEYANK 124
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+
Sbjct: 125 RV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 881 TVVCTIHQ 888
TV+ + HQ
Sbjct: 180 TVILSTHQ 187
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-13
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETF 761
++NG+S G L+G +GAGK+T+ ++ G + G IT+ G P + +
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLAR 113
Query: 762 TRISGYCEQNDIHSPFVTVYESLL-YSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
RI G Q D TV E+LL + + + + + I ++E L +
Sbjct: 114 ARI-GVVPQFDNLDLEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARLESKADA 168
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
V S LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+
Sbjct: 169 RV-----SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 223
Query: 881 TVVCTIH 887
T++ T H
Sbjct: 224 TILLTTH 230
|
Length = 340 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-13
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 14/199 (7%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L+ +S + G L AL+G SGAGK+TL+ ++AG G I N + R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRL--PPEVDSETQKMFIEEIMELVELNPLRQSL 821
G+ Q+ P +TV +++ + +R P E + + +EE++ LV+L L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR---VEELLRLVQLEGLADR- 133
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 880
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G
Sbjct: 134 --YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 881 TVVCTIHQPSIDIFESFDE 899
T V H + E D
Sbjct: 190 TTVFVTHDQE-EALELADR 207
|
Length = 345 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 3e-13
Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 62/234 (26%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQH-D 56
L++GP SGK+TLL L G L SG V +G + + + R + Q+ D
Sbjct: 29 FVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPD 85
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
TV E +AF G+ ++ R +EA
Sbjct: 86 DQFFGPTVEEEVAFGLENLGL-PEEEI----EERVEEA---------------------- 118
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV-GPALALFMDEISTGL 175
L+++GLE D +SGGQK+RV ++ P + L +DE + GL
Sbjct: 119 -------LELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAMDPDI-LLLDEPTAGL 165
Query: 176 DSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL------FDDIILLSDAQ 223
D + +++ +++ + T +I T+DL D +I+L D +
Sbjct: 166 DPAGRRELLELLKK-LKAEGKTIIIV-------THDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 49/162 (30%), Positives = 84/162 (51%), Gaps = 13/162 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L+ VS G L AL+G SG+GKTTL+ ++AG R G I G + P ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQ-KMFIEEIMELVELNPLRQSL 821
R G+ Q+ +TV++++ + ++ E E + + + E+++LV+L+ L
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR- 132
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
P + LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 133 --YPAQ--LSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 4e-13
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 34/194 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L+GVS RPG + AL+G +GAGK+TLM +L+G G I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG----EILIDGKP------VA 73
Query: 764 ISGYCEQND-----IH-----SPFVTVYESLLYSAWLRLP-PEVDSETQKMFIE--EIME 810
S + +H P ++V E++ +D + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLA 131
Query: 811 LVELN-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
+ L+ LVG LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDT-LVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF 185
Query: 870 RTVRNTVDTGRTVV 883
+R G ++
Sbjct: 186 DLIRRLKAQGVAII 199
|
Length = 500 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 4e-13
Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFT-RI 764
L+ V+ G L AL+G SG+GK+TL+ ++AG + +G I ++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 765 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL 824
G+ Q+ +TV +++ + +R P K +EE++ELV+L L
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHP---KAKIKARVEELLELVQLEGLGDRY--- 127
Query: 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+ LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 128 --PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 5e-13
Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS------GY 767
RPG L+GV+GAGKTT +L G T +G+ T++G + T IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 768 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827
C Q D +T E L A LR P E +K+ I L L+ L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPA--EEIEKVANWSIQSL-GLSLYADRLAGT--- 2070
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2071 --YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 6e-13
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 30/171 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ---- 758
LN +S PG L ++G +GAGKTT+MDV+ G R G + G ++G P+ Q
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 759 ---ETFTRISGYCEQNDIHSPFVTVYESLL------YSAWLRLPPEVDSETQKMFIEEIM 809
F + + + +TV+E+L S + L + +E +K IEE++
Sbjct: 78 GIGRKFQKPTVF--------ENLTVFENLELALPRDKSVFASLFFRLSAE-EKDRIEEVL 128
Query: 810 ELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860
E + L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 129 ETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 9e-13
Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 64/234 (27%)
Query: 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLM---- 733
+ F+ VT++ D +L VS G A++G SG+GK+T++
Sbjct: 1 IEFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF 48
Query: 734 ---DVLAGRKTGGYITGNITISGYPKK---QETFTRISGYCEQ-----NDIHSPFVTVYE 782
DV +G I I G + ++ R G Q ND T+
Sbjct: 49 RFYDVSSGS---------ILIDGQDIREVTLDSLRRAIGVVPQDTVLFND------TIGY 93
Query: 783 SLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP-------GESG--LSTE 833
++ Y T EE++E + + ++ P GE G LS
Sbjct: 94 NIRYGRP--------DATD----EEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGG 141
Query: 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
+++R+ IA ++ NP I+ +DE TS LD + +R V GRT + H
Sbjct: 142 EKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALR-DVSKGRTTIVIAH 194
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQETF 761
LN +S + PG L L+G +GAGKTTLMDV+ G R G G+ ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 762 TRISGYCEQNDIHSPF--VTVYESLLY------SAWLRLPPEVDSETQKMFIEEIMELVE 813
R G + + F +TV E+L S + L + +E ++ I+E++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAE-ERRRIDELLATIG 136
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860
L R L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 62/200 (31%), Positives = 92/200 (46%), Gaps = 26/200 (13%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIT-GNITISGYP--KKQE 759
+L+G+ +PG + A++G SG+GKTTL+ L + G I G+ITI +Q+
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 760 TFTRI----SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
R G+ QN P TV E+++ P V E ++ EL+
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-----PVIVKGEPKEEATARARELL--- 129
Query: 816 PLRQSLVGLPGESG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
+ VGL G+ LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 ----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN 185
Query: 871 TVRNTVDTGRTVVCTIHQPS 890
T+R RT+V H+ S
Sbjct: 186 TIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 56/188 (29%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNITISGYPKKQETF 761
L G+S G + +G +GAGKTT + +L+G + T G + G + + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP---WKRRKKFL 93
Query: 762 TRISGYCEQNDIHSPFVTVYESL-LYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
RI Q + V +S L +A LPP + ++E+ EL++L L +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKR----LDELSELLDLEELLDT 149
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 879
V LS QR R IA L+ P I+F+DEPT GLD A + ++ + G
Sbjct: 150 PV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG 204
Query: 880 RTVVCTIH 887
TV+ T H
Sbjct: 205 TTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQND-IH 774
G + AL+GV+G+GK+TL L G +G I+I G P +Q + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 775 SPFVTVYESLL------YSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828
F + E ++ + WLR + D + + + V++ R +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI----VTAALARVDMVEFRHRQIG----- 141
Query: 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-12
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 26/168 (15%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ-ET 760
L+ VS G + ++G SGAGK+TL+ ++ R T G + ++ + +
Sbjct: 21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80
Query: 761 FTRISGYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ G Q N + S TV+E++ + P E+ + + + EL+EL
Sbjct: 81 LRQKIGMIFQHFNLLSSR--TVFENVAF------PLELAGVPKAEIKQRVAELLEL---- 128
Query: 819 QSLVGLPG-----ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
VGL + LS Q++R+ IA L NP I+ DE TS LD
Sbjct: 129 ---VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
|
Length = 339 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 3e-12
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+T L+G +GKTTLL LAG+ + + +G + NG +D+ QR+ Y+ Q DVH
Sbjct: 35 LTALMGESGAGKTTLLDVLAGRKTAGV-ITGEILINGRPLDKNF-QRSTGYVEQQDVHSP 92
Query: 61 EMTVRETLAFSARCQGVG 78
+TVRE L FSA +G+
Sbjct: 93 NLTVREALRFSALLRGLS 110
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 56/195 (28%), Positives = 93/195 (47%), Gaps = 26/195 (13%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP----KKQE 759
++L+ VS G +T+++G +GAGK+TL+ + R +G ITI G +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKE 72
Query: 760 TFTRISGYCEQNDIHSPFVTVYESLL------YSAWLRLPPEVDSETQKMFIEEIMELVE 813
++S ++N I+S TV L+ YS RL E + I E +E +
Sbjct: 73 LAKKLSILKQENHINSRL-TV-RDLVGFGRFPYSQG-RLTKE-----DRRIINEAIEYLH 124
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
L L + LS QR+R IA+ L + + +DEP + LD + + +M+ +R
Sbjct: 125 LEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179
Query: 874 NTVDT-GRTVVCTIH 887
D G+T+V +H
Sbjct: 180 RLADELGKTIVVVLH 194
|
Length = 252 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 3e-12
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 17/194 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L G++ + G +TA++G +GAGK+TL L G + + G I + Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 764 IS-GYCEQNDIHSPF-VTVYESLLYSAW-LRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
S G Q+ + F +VY+ + + A L+LP + E +K ++ ++ + L+
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLP---EDEVRKR-VDNALKRTGIEHLKDK 137
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 879
P LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G
Sbjct: 138 ----PTHC-LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG 192
Query: 880 RTVVCTIHQPSIDI 893
T++ H IDI
Sbjct: 193 LTIIIATH--DIDI 204
|
Length = 283 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-12
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 16/153 (10%)
Query: 715 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQ-ETFTRISGYC 768
PG +TA+ G SG+GKTTL+ ++AG R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 769 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828
Q P ++V +L Y P E + F E ++EL+ + L L LPG
Sbjct: 81 FQEARLFPHLSVRGNLRYGMKRARPSE----RRISF-ERVIELLGIGHL---LGRLPGR- 131
Query: 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 132 -LSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 19/162 (11%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQE 759
K +N +S + L+G +GAGK+TL+ ++ G R T +G I G+P ++
Sbjct: 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRK 67
Query: 760 TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
+I E ++ +T E+L L P DS I+E++ +V+L +
Sbjct: 68 DLHKIGSLIESPPLYEN-LTARENLKVHTTLLGLP--DSR-----IDEVLNIVDLTNTGK 119
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
S ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 120 KKAK-----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 7e-12
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 21/160 (13%)
Query: 720 ALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETFTRISGYCEQNDIHSP 776
++G +G+GK+ L++ +AG + G I N I+ P ++ Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 777 FVTVYESLLYSAWLRLPPEVDSETQKMFIEE---IMELVELNPLRQSLVGLPGESGLSTE 833
+TVY+++ Y R + + E + + I E I L+ P LS
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LSGG 133
Query: 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
+++R+ IA LV NP I+ +DEP S LD R + ++
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 7e-12
Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 18/189 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
+N VS G + L+G +GAGKTT ++ G R G I + I+ P +
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79
Query: 763 RISGYCEQNDIHSPF--VTVYESLLYSAWLRLPPEVDSET--QKMFIEEIMELVELNPLR 818
I GY Q S F +TV ++++ +R E D + +K ++ ++E + LR
Sbjct: 80 GI-GYLPQE--ASIFRKLTVEDNIMAVLEIR---EKDLKKAERKEELDALLEEFHITHLR 133
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
S S LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D
Sbjct: 134 DS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR 188
Query: 879 GRTVVCTIH 887
G V+ T H
Sbjct: 189 GIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 8e-12
Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 47/181 (25%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 755
L ++ +TAL+G SG GK+TL+ D++ G + + G + + G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNIYD 78
Query: 756 KKQETF---TRISGYCEQ--NDIHSPFV-TVYESLLYSAWLRLPPEVDSETQKMFIEEIM 809
K + R+ G Q N PF ++Y+++ Y LRL D E +
Sbjct: 79 PKVDVVELRRRV-GMVFQKPN----PFPMSIYDNVAYG--LRLHGIKDKE--------LD 123
Query: 810 ELVELNPLRQSLVGLPGE---------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860
E+VE + L++ L E GLS Q++RL IA L P ++ MDEPTS L
Sbjct: 124 EIVE-SSLKK--AALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSAL 180
Query: 861 D 861
D
Sbjct: 181 D 181
|
Length = 253 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 9e-12
Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 14/189 (7%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF 761
+L GVS + G + A++G SG+GK+TL+ +L G +G + +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 762 TRISGYCEQNDIHSPFVTVYESLL--YSAW--LRLPPEVDSETQKMFIEEIMELVELNPL 817
+ + + F+ + LL ++A + +P + ++ K E E++E L
Sbjct: 75 NERA---KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL 131
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTVRN 874
+ P E LS +R+R+ IA LV PS++ DEPT LD A I+ M +
Sbjct: 132 EHRINHRPSE--LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189
Query: 875 TVDTGRTVV 883
++T VV
Sbjct: 190 ELNTSFLVV 198
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 1e-11
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 14/187 (7%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK-KQETFT 762
+++N +S G L+G +GAGK+T+ +L G + G IT+ G P +
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 763 RIS-GYCEQNDIHSPFVTVYESLL-YSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
R++ G Q D P TV E+LL + + + + + I ++E L
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARLESKADV 131
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
V L LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+
Sbjct: 132 RVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 186
Query: 881 TVVCTIH 887
T++ T H
Sbjct: 187 TILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 36/206 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYITGNITISG---YPK 756
LN VS F P +TAL+G SG+GK+TL M+ L T ITG+I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 757 KQETF---TRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEE----- 807
+ +T I +Q + PF +++YE+++Y LRL D + +E+
Sbjct: 78 RTDTVDLRKEIGMVFQQPN---PFPMSIYENVVYG--LRLKGIKDKQVLDEAVEKSLKGA 132
Query: 808 -IMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
I + V+ + L S +GL G Q++R+ IA L +P II +DEPTS LD +A
Sbjct: 133 SIWDEVK-DRLHDSALGLSGG------QQQRVCIARVLATSPKIILLDEPTSALDPISAG 185
Query: 867 IVMRTVRNTVD--TGRTVVCTIHQPS 890
+ T+ D T V ++ Q S
Sbjct: 186 KIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L VS G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 763 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R G Q+ P TVYE++ LP V + + + E+++L L+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVA------LPLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
LP + LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALPSQ--LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 882 VVCTIH 887
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-11
Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 18/133 (13%)
Query: 730 TTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS----GYCEQNDIHSPFVTVYESLL 785
+TL+ ++ G +G I + G + ++ G Q+ P +TV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 786 YSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELV 845
+ + EE +E V L LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDREPV----GTLSGGQKQRVAIARALL 106
Query: 846 ANPSIIFMDEPTS 858
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 12/190 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFT 762
L+ VS R G L G SGAGKTTL+ +L G T G ++ +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 763 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R G Q+ P TVYE++ +R E + + + + + V L
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEH---KA 131
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
P + LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G T
Sbjct: 132 DAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTT 189
Query: 882 VVCTIHQPSI 891
V+ H S+
Sbjct: 190 VIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFTRI 764
L+GVS + G L+G SG GKTTL+ ++AG +T +G I + G R
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLPPHKRP 73
Query: 765 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL 824
QN P +TV+E++ + LRL ++ K + E ++LV+L
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFG--LRLK-KLPKAEIKERVAEALDLVQLEGYANRKP-- 128
Query: 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 129 ---SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 57/197 (28%), Positives = 83/197 (42%), Gaps = 34/197 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
L G+S PG AL+G SG GK+T++ D +G I + G +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE---------ILLDGVDIRD 69
Query: 759 ---ETFTRISGYCEQNDIHSP---FVTVYESLLYSAWLRLPPEVDSETQKMFIEE-IMEL 811
G Q P T+ E++ Y EV+ +K I + IM L
Sbjct: 70 LNLRWLRSQIGLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL 125
Query: 812 VELNPLR-QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
P +LVG S LS Q++R+ IA L+ NP I+ +DE TS LDA + +V
Sbjct: 126 ----PDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 871 TVRNTVDTGRTVVCTIH 887
+ + GRT + H
Sbjct: 181 AL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 2e-11
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 760
L GVS G + AL+G +GAGKTTL+ + G R G I +IT
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT------GLPP 72
Query: 761 FTRIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV-ELNP 816
R Y + P +TV E+LL A+ R D E Q+ +EE+ EL L
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYAR----RDKEAQERDLEEVYELFPRLKE 128
Query: 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
R G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 129 RRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 877 DTGRTVVCTIHQ 888
G + + Q
Sbjct: 184 KEGGMTILLVEQ 195
|
Length = 237 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
L VS G L ++G SG GKTTL++++AG T G+I ++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 765 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-RQSLVG 823
G QN+ P++ V +++ + LR ++ ++ +++ LV L + +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQ 132
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
L G R+R+ IA L P ++ +DEP LDA
Sbjct: 133 LSGG------MRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 3e-11
Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 26/225 (11%)
Query: 671 LPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKT 730
L S+ F+ V++S K +L +S + PG A++G SG+GK+
Sbjct: 322 LKDTIGSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKS 369
Query: 731 TLMDVLAGRKTGGYITGNITISGYPKKQETFT---RISGYCEQNDIHSPF-VTVYESLLY 786
TL+ +L +G I I G + + + G Q+ + F T+ E++
Sbjct: 370 TLIKLLLRLYD--PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL--FSGTIRENIAL 425
Query: 787 SAWLRLPPEVDSETQKMFIEE-IMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELV 845
E++ + E I L + ++VG LS QR+RL IA L+
Sbjct: 426 GRPDATDEEIEEALKLANAHEFIANLPDGY---DTIVG-ERGVNLSGGQRQRLAIARALL 481
Query: 846 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890
NP I+ +DE TS LD A++ ++ + GRT + H+ S
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLS 525
|
Length = 567 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-11
Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 27/198 (13%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFT 762
L G+S + + G A++G SG+GK+TL ++ G +G++ + G KQ ETF
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDRETFG 391
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
+ GY Q D+ TV E++ R D E +I+E +L + + ++
Sbjct: 392 KHIGYLPQ-DVELFPGTVAENIA-----RFGENADPE-------KIIEAAKLAGVHELIL 438
Query: 823 GLP---------GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
LP G + LS QR+R+ +A L +P ++ +DEP S LD + ++
Sbjct: 439 RLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498
Query: 874 NTVDTGRTVVCTIHQPSI 891
G TVV H+PS+
Sbjct: 499 ALKARGITVVVITHRPSL 516
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 3e-11
Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 26/214 (12%)
Query: 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 735
+L + VT S ++ +S PG + L+G +GAGKTT +
Sbjct: 1 MALEIEGVTKSFG-------------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRM 47
Query: 736 LAGRKTGGYITGNITISGYPKKQETFTRISGYC-EQNDIHSPFVTVYESLLYSAWLRLPP 794
+ G G IT +G P QE RI GY E+ ++ P +TV + L Y A L+ P
Sbjct: 48 ILGLLE--PTEGEITWNGGPLSQEIKNRI-GYLPEERGLY-PKMTVEDQLKYLAELKGMP 103
Query: 795 EVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 854
+ + + + ++ +E +E+ + + LS ++++ ++ P ++ +D
Sbjct: 104 KAEIQKK---LQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILD 155
Query: 855 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 888
EP SGLD ++ + + G T++ + H+
Sbjct: 156 EPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR 189
|
Length = 300 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 19/173 (10%)
Query: 696 QGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755
QG E +L +L GV + G AL+G SG+GK+TL+ +LAG G +G +++ G P
Sbjct: 18 QG--EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQP 73
Query: 756 -------KKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEI 808
+ + + G+ Q+ + P + E++ A LR S
Sbjct: 74 LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGA------ 127
Query: 809 MELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
L+E L + L LP + LS +++R+ +A P ++F DEPT LD
Sbjct: 128 KALLEQLGLGKRLDHLPAQ--LSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-11
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 27/167 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L +S + + G L+G SG GKTTL+ ++AG R+T G I G I+ P ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY- 78
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV-ELNPLRQSL 821
G Q+ P +TV +++ Y + + M E+ E V EL L
Sbjct: 79 ---GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAEL----LDL 121
Query: 822 VGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
VGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 24/209 (11%)
Query: 694 KLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 753
K G E +L +L GV + G A++G SG+GK+TL+ VLAG +G + + G
Sbjct: 14 KTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLG 71
Query: 754 YP---KKQETFTRIS----GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIE 806
P ++ + G+ Q+ P +T E++ LP E+ E+
Sbjct: 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVA------LPLELRGESSADSRA 125
Query: 807 EIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----A 862
L+E L + L P + LS +++R+ +A P ++F DEPT LD
Sbjct: 126 GAKALLEAVGLGKRLTHYPAQ--LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183
Query: 863 RAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
+ A ++ R + G T+V H P +
Sbjct: 184 KIADLLFALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 4e-11
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 26/201 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFTRI 764
L+ V G + AL+G SG+GK+TL+ L+G TG G +I + G ++E R+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG--RL 77
Query: 765 SGYCEQNDIHSPFV----------TVYESLLYSA------WLRLPPEVDSETQKMFIEEI 808
+ ++ ++ ++ +V E++L A W R + QK +
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFW-RTCFSWFTREQKQRALQA 136
Query: 809 MELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
+ V + V S LS Q++R+ IA L+ +I DEP + LD +A IV
Sbjct: 137 LTRVGMVHFAHQRV-----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191
Query: 869 MRTVRNTVDT-GRTVVCTIHQ 888
M T+R+ G TVV T+HQ
Sbjct: 192 MDTLRDINQNDGITVVVTLHQ 212
|
Length = 262 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 5e-11
Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 16/193 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI-----SGYPKKQET 760
L ++ PG + L G SG+GKTTL+ ++ G ++ G++ + G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 761 FTRIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
R + GY Q F+T +++ + L L P + + + ++E V L
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLG---D 133
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 878
L P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ +
Sbjct: 134 HLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 879 GRTVVCTIHQPSI 891
G T++ H I
Sbjct: 192 GCTILIVTHDNRI 204
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 5e-11
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+LN +S + G +TAL+G +G GK+TL+ A T +G + + P + ++
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQL 74
Query: 765 SGYCE---QNDIHSPFVTVYESLLY------SAWLRLPPEVDSETQKMFIEEIMELVELN 815
+ Q+ + +TV E + Y S W RL S + + ME +N
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL-----SAEDNARVNQAMEQTRIN 129
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
L + + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 130 HLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 876 VDTGRTVVCTIH 887
G+TVV +H
Sbjct: 185 NTQGKTVVTVLH 196
|
Length = 255 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 11/163 (6%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFT 762
+L +S PG A++G +GAGKTTL+ +L G + G +T G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 763 RISGYC--EQNDIHSPFVTVYESLL--YSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ G E ++ TV + +L + A + + E + + ++EL+ L
Sbjct: 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA 165
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
G LS +++R+ IA LV +P ++ +DEP GLD
Sbjct: 166 DRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLD 203
|
Length = 257 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 6e-11
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 24/164 (14%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNITISGYPKKQETF- 761
L+ VS + G + +G +GAGK+T M ++ G Y+ +G++ + G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 762 -TRISGYCEQNDIHSPF---VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL 817
R GY + H+P + V E L + A + + + K +EE++ELV L P
Sbjct: 73 VQRNIGYLPE---HNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPE 126
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 7e-11
Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 24/192 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP----KKQETF 761
L + G A++G SG+GK+TL+ +LAG G+IT++G +Q
Sbjct: 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIASLDEQALR 411
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL-NPLRQS 820
IS ++ + S T+ ++L + P+ E + ++ V L L +
Sbjct: 412 ETISVLTQRVHLFSG--TLRDNLRLAN-----PDASDEE----LWAALQQVGLEKLLESA 460
Query: 821 LVGLP---GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
GL GE G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 461 PDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH 520
Query: 876 VDTGRTVVCTIH 887
+ G+T++ H
Sbjct: 521 AE-GKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 8e-11
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 16/196 (8%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISG---YPKKQ 758
++GVS + G + ++G SG+GK+ L + G K I G I G +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 759 ETFTRISG----YCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV 812
+ +I G Q+ + S P +T+ + + L E ++ E++ELV
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKER-AIELLELV 138
Query: 813 ELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 872
+ + L P E LS R+R+ IA+ L NP ++ DEPT+ LD A ++ +
Sbjct: 139 GIPDPERRLKSYPHE--LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLL 196
Query: 873 RNTV-DTGRTVVCTIH 887
+ + G ++ H
Sbjct: 197 KELQREKGTALILITH 212
|
Length = 316 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 9e-11
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 20/152 (13%)
Query: 715 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT---RISGYCE 769
G+ TAL G SG+GKT+L++++AG R G I N + +K R GY
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82
Query: 770 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829
Q+ P TV +L Y W + + D +++ L+ + L L PG
Sbjct: 83 QDARLFPHYTVRGNLRYGMWKSMRAQFD---------QLVALLGIEHL---LDRYPGT-- 128
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 54/232 (23%), Positives = 90/232 (38%), Gaps = 48/232 (20%)
Query: 2 TLLLGPPCSGKTTLLLALAG--KLDS-KLKFSGRVTYNGH-GMDEFVPQRTAAYISQHDV 57
T + G +GK+TLL +AG K D + +G V ++ ++ QR + Q
Sbjct: 26 TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ VRE LAF + + + EL
Sbjct: 86 LFPHLNVRENLAFGLKRKRNREDRISVDEL------------------------------ 115
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLD 176
L +LGL+ + + +SGG+K+RV + P L L +DE + LD
Sbjct: 116 ------LDLLGLDH-----LLNRYPAQLSGGEKQRVALARALAAQPEL-LLLDEPFSALD 163
Query: 177 SSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
+ Q++ ++Q LN VI + E L D I+++ D ++ Y G
Sbjct: 164 RALRLQLLPELKQIKKNLNIP-VIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 56/203 (27%), Positives = 87/203 (42%), Gaps = 28/203 (13%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 759
D +L +S G AL+G SG+GK+TL++++ + +G I I G+ +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDY 69
Query: 760 TFT---RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
T R G Q D+ TV E++ Y P E E+ E
Sbjct: 70 TLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR-----PGATRE-------EVEEAARAAN 116
Query: 817 LRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 867
+ ++ LP GE G LS QR+R+ IA L+ +P I+ +DE TS LD + +
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 868 VMRTVRNTVDTGRTVVCTIHQPS 890
V + + RT H+ S
Sbjct: 177 VQAALERLMK-NRTTFVIAHRLS 198
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 35/199 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY------PKKQE 759
L VS + G + ++G SGAGK+TL+ + G + +G++ + G K+
Sbjct: 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELR 78
Query: 760 TFTRISGYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL 817
R G Q N + S TV+E++ P E+ + E ++EL+EL
Sbjct: 79 KARRRIGMIFQHFNLLSSR--TVFENVAL------PLEIAGVPKAEIEERVLELLEL--- 127
Query: 818 RQSLVGL-------PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
VGL P + LS Q++R+ IA L NP ++ DE TS LD ++
Sbjct: 128 ----VGLEDKADAYPAQ--LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILA 181
Query: 871 TVRNT-VDTGRTVVCTIHQ 888
+R+ + G T+V H+
Sbjct: 182 LLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-10
Identities = 54/185 (29%), Positives = 82/185 (44%), Gaps = 35/185 (18%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT 762
L+ S +PG AL+G SG+GK+T+ ++AG + G I G P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 763 RISG---YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSE--TQKMFIEEIMELVELNPL 817
++ +Q DI TV ++L + W P+ D + I ++
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDV--------- 597
Query: 818 RQSLVGLPG-------ESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
+ PG E G LS QR+RL IA LV NPSI+ +DE TS LD I+
Sbjct: 598 ---ITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654
Query: 869 MRTVR 873
+R
Sbjct: 655 DDNLR 659
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 62/269 (23%), Positives = 100/269 (37%), Gaps = 69/269 (25%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMD--EFVPQRTAA--YISQHD 56
+ LLGP +GK+TLL +AG +GR+ NG + + R ++ QH
Sbjct: 30 LVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHY 86
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
MTV + +AF + + R EA I+ +
Sbjct: 87 ALFPHMTVADNIAFGLKVR------------KERPSEAEIRA--------RVEEL----- 121
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFMDEI 171
L + + D +SGGQ++RV + ALA L +DE
Sbjct: 122 ------------LRLVQLEGLADRYPAQLSGGQRQRVA-----LARALAVEPKVLLLDEP 164
Query: 172 STGLDSSTTFQIVNSIRQ---NIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
LD ++ +R+ +H G + + E +L D +++L+ +I G
Sbjct: 165 FGALD----AKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVG 220
Query: 229 PRELVLDFFESMGFKCPERKGVADFLQEV 257
P + V D P + VA FL EV
Sbjct: 221 PPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 46/186 (24%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 755
L ++ +TAL+G SG GK+TL+ D++ G + I G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDIYD 72
Query: 756 KKQETF---TRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMEL 811
KK + R+ G Q +PF +++Y+++ Y P + K ++EI+E
Sbjct: 73 KKIDVVELRRRV-GMVFQKP--NPFPMSIYDNIAYG------PRLHGIKDKKELDEIVE- 122
Query: 812 VELNPLRQSL--VGLPGE---------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860
+SL L E GLS Q++RL IA L P ++ +DEPTS L
Sbjct: 123 -------ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 861 DARAAA 866
D A
Sbjct: 176 DPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-10
Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 37/195 (18%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
+ VS + + G + AL+G +GAGK+TLM +L G + G I + G R
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS----GEIRVDGKE------VR 69
Query: 764 ISGYCEQND--------IHSPFV-----TVYESLLYSAWLRLPPEVDSETQKMFIEEIME 810
I D +H F+ TV E+++ +D + I+E+ E
Sbjct: 70 IKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSE 126
Query: 811 L--VELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
+ ++P + V LS +++R+ I L ++ +DEPT+ L + A +
Sbjct: 127 RYGLPVDP--DAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADEL 179
Query: 869 MRTVRNTVDTGRTVV 883
+R G+T++
Sbjct: 180 FEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 19/164 (11%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISG-----YPKKQ 758
LL V+ G + LMG SG GK+TL+ + G G + TG + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
R G Q+ + P ++V ++LL++ LP + ++ +E L+
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
+ LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-10
Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 35/198 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L+ +S R G + ALMG +GAGK+TL+ +L+G G+I I G + F +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMR---FASTT 74
Query: 766 GYCEQND--IH-----SPFVTVYESLLYSAWL-RLPPE---VDSETQKMFIEEIMELVEL 814
I+ P +TV E+L +L +LP + V+ E +E + +
Sbjct: 75 AALAAGVAIIYQELHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHLGV 130
Query: 815 N-----PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
+ PL+ LS QR+ + IA L N +I DEPTS L AR +
Sbjct: 131 DIDPDTPLKY----------LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLF 180
Query: 870 RTVRNTVDTGRTVVCTIH 887
R +R GR ++ H
Sbjct: 181 RVIRELRAEGRVILYVSH 198
|
Length = 501 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-10
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 18/191 (9%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 758
D L +G+S G + G +G+GKTTL+ +LAG G + N ++
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG--PLDFQR 68
Query: 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
++ R Y ++V E+L + + E +EE + V LN
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENL---RFWH--ADHSDEQ----VEEALARVGLNGFE 119
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 120 DRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174
Query: 879 GRTVVCTIHQP 889
G VV T HQ
Sbjct: 175 GGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 143 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVI-S 201
RG+S Q+KR+T G + LF+DE ++GLDS + IV ++ + +G A++ +
Sbjct: 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLK-KL-ADSGQAILCT 164
Query: 202 LLQPAPETYDLFDDIILL-SDAQIVYQG 228
+ QP+ ++ FD ++LL + VY G
Sbjct: 165 IHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 57/246 (23%), Positives = 99/246 (40%), Gaps = 50/246 (20%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP----QRTAAYISQH- 55
LL+GP SGK+TLL L G L SG V +G ++ + Q+
Sbjct: 32 RVLLIGPNGSGKSTLLKLLNGLL---KPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNP 88
Query: 56 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQE 115
D + TV + +AF L L +E ++ E
Sbjct: 89 DDQLFGPTVEDEVAF------------GLENLGLPREE------------IEERVAE--- 121
Query: 116 ANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT-TGEMMVGPALALFMDEISTG 174
L+++GLE + L D +SGGQK+RV G + +GP + L +DE + G
Sbjct: 122 -------ALELVGLE---ELL--DRPPFNLSGGQKQRVAIAGVLAMGPEI-LLLDEPTAG 168
Query: 175 LDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234
LD +++ +++ + G +I + + D +++L D +I+ G +
Sbjct: 169 LDPKGRRELLELLKK-LKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF 227
Query: 235 DFFESM 240
+ E +
Sbjct: 228 NDAELL 233
|
Length = 235 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 4e-10
Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
++ V+ G L+G SG+GKTT + ++ T G I IS
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD---PVEL 73
Query: 763 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPE---VDSETQKMFIEEIMELVELNPLR 818
R GY Q P +TV E++ P+ D E K +E+++LV L+P
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIA------TVPKLLGWDKERIKKRADELLDLVGLDP-S 126
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
+ P E LS Q++R+ +A L A+P I+ MDEP LD
Sbjct: 127 EYADRYPHE--LSGGQQQRVGVARALAADPPILLMDEPFGALDP 168
|
Length = 309 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 4e-10
Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 21/195 (10%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFT 762
L G+S A + G ++G SG+GK+TL +L G +G++ + G +Q E
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLG 409
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIE-----EIMELVELNPL 817
R GY Q D+ T+ E++ R E D E IE + EL+ P
Sbjct: 410 RHIGYLPQ-DVELFDGTIAENIA-----RFGEEADPEK---VIEAARLAGVHELILRLPQ 460
Query: 818 -RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
+ +G G + LS QR+R+ +A L +P ++ +DEP S LD+ A + +
Sbjct: 461 GYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK 519
Query: 877 DTGRTVVCTIHQPSI 891
G TVV H+PS
Sbjct: 520 ARGGTVVVIAHRPSA 534
|
Length = 580 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 4e-10
Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 13/193 (6%)
Query: 708 GVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISG---YPKKQE-- 759
V+ + G + AL+G SG GKTT + + + G +TG I + G Y + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 760 TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
R G Q P ++V+++++ A L+L D + E + L +
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDEVK 139
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--MRTVRNTVD 877
+ P +GLS Q++RL IA L P I+ MDEPTS LD + A + + T V
Sbjct: 140 DRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVT 198
Query: 878 TGRTVVCTIHQPS 890
T V +HQ +
Sbjct: 199 TIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-10
Identities = 50/181 (27%), Positives = 76/181 (41%), Gaps = 31/181 (17%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
LL VS PG L+G +GAGK+TL+ +LAG +G +T K
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTR----PKGLRV--- 68
Query: 765 SGYCEQNDIHSPFVTVYESLL--YSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL- 821
GY Q P TV + ++ + L E++ + + L EL L + L
Sbjct: 69 -GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 822 --------------VGLPGE----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+G P E S LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 128 GWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLE 187
Query: 864 A 864
+
Sbjct: 188 S 188
|
Length = 530 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 5e-10
Identities = 60/197 (30%), Positives = 89/197 (45%), Gaps = 34/197 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L G++ G + AL+G +GAGK+TL G + T +G + I G P K + +
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKYDKKSL 73
Query: 764 IS-----GYCEQN---DIHSPFVTVYESLLYSAW-LRLPPEVDSETQKMFIEEI----ME 810
+ G QN + +P TV E + + L L E E +K E + ME
Sbjct: 74 LEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKE---EVEKRVKEALKAVGME 128
Query: 811 LVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
E P LS Q+KR+ IA L P II +DEPTSGLD A+ +M+
Sbjct: 129 GFENKPPHH----------LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMK 178
Query: 871 TVRNTVDTGRTVVCTIH 887
+ + G T++ + H
Sbjct: 179 LLYDLNKEGITIIISTH 195
|
Length = 275 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 6e-10
Identities = 65/253 (25%), Positives = 103/253 (40%), Gaps = 54/253 (21%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ-RTAAYISQHDVHIGEM 62
LLGP GK+TLL +AG + SG + +G + + P+ R A + Q+ M
Sbjct: 34 LLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHM 90
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
TV E +AF + +GV E+ +R KE
Sbjct: 91 TVYENIAFGLKLRGVPKA-----EIDKRVKEV---------------------------- 117
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 182
K+LGLE + + +SGGQ++RV +V +DE + LD+
Sbjct: 118 -AKLLGLE-----HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVL 171
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVLDFFESMG 241
+ + I + +H GT I + E L D I++++D +I G P EL
Sbjct: 172 MRSEI-KKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL--------- 221
Query: 242 FKCPERKGVADFL 254
++ P VA F+
Sbjct: 222 YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 7e-10
Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 22/161 (13%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFT 762
L GVS G +T ++G +G GKTTL+ L G K+G I+ P
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----PHE 71
Query: 763 RIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
R Y Q P +TV E+LL + +EI EL P+ +
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTGL------AALPRRSRKIPDEIYELF---PVLK 122
Query: 820 SLVGLPGESG-LSTEQRKRLTIAVELVANPSIIFMDEPTSG 859
++G G G LS Q+++L IA LV P ++ +DEPT G
Sbjct: 123 EMLGRRG--GDLSGGQQQQLAIARALVTRPKLLLLDEPTEG 161
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 7e-10
Identities = 58/212 (27%), Positives = 87/212 (41%), Gaps = 46/212 (21%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQETF 761
+N ++ G L+G SG+GKTT M + I G I I G +++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 762 TRIS---GYCEQNDIHSPFVTVYE------SLLYSAWLRLPPEVDSETQKMFIEEIMELV 812
+ GY Q P +TV E LL W + E + +E++ LV
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADELLALV 121
Query: 813 ELNPLRQSLVG-LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
L+P P E LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 122 GLDP--AEFADRYPHE--LSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRD 172
Query: 872 ------VRNTVDTGRTVVCTIHQPSIDIFESF 897
R + G+T+V H DI E+F
Sbjct: 173 QLQEEFKRLQQELGKTIVFVTH----DIDEAF 200
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 8e-10
Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 11/186 (5%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFTR 763
+L+ +S G L AL+G SG GKTTL+ +AG +TG I I+ R
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
QN P + V +++ + + P+ D E + + ++L L +
Sbjct: 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKAD------IAERVADALKLVGLGDAAAH 133
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRT 881
LP + LS ++R+ IA + P ++ +DEP S LDA A + + + T
Sbjct: 134 LPAQ--LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT 191
Query: 882 VVCTIH 887
++C H
Sbjct: 192 ILCVTH 197
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 8e-10
Identities = 59/200 (29%), Positives = 95/200 (47%), Gaps = 32/200 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---ET 760
L+ VS RPG A++G G+GK+TL+ +L G + T G ++ + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG----SVLLDGVDIRQIDPAD 536
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL----NP 816
R GY Q D + T+ +++ A P D E EI+ EL
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYADDE-------EILRAAELAGVTEF 583
Query: 817 LRQSLVGLP---GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
+R+ GL GE G LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 584 VRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR 643
Query: 872 VRNTVDTGRTVVCTIHQPSI 891
++ + G+T+V H+ S+
Sbjct: 644 LKRWL-AGKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 45/190 (23%), Positives = 72/190 (37%), Gaps = 41/190 (21%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+L GV+ + G + ALMG +G+GK+TL + G G I G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 765 SGYCEQNDIHSPFVTVYESL---LYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
DI + E ++ A+ PPE+ F+ + E
Sbjct: 64 ------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE----------- 103
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
G S ++KR I L+ P + +DEP SGLD A +V + + G++
Sbjct: 104 -------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 882 VVCTIHQPSI 891
V+ H +
Sbjct: 157 VLIITHYQRL 166
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-09
Identities = 63/241 (26%), Positives = 104/241 (43%), Gaps = 40/241 (16%)
Query: 663 QPKKRGMV-LPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTAL 721
+P+ G+ LP ++TF+ + + D +L+ ++ +PG +
Sbjct: 440 EPRSAGLAALPELRGAITFENIRFRYA-----------PDSPEVLSNLNLDIKPGEFIGI 488
Query: 722 MGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPFV 778
+G SG+GK+TL +L T + G + + G R G V
Sbjct: 489 VGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIADPAWLRRQMG-----------V 535
Query: 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP-------GESG-- 829
+ E++L+S +R + E ++ +L + LP GE G
Sbjct: 536 VLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGAN 593
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 889
LS QR+R+ IA LV NP I+ DE TS LD + A++MR +R + GRTV+ H+
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMR-EICRGRTVIIIAHRL 652
Query: 890 S 890
S
Sbjct: 653 S 653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-09
Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 21/201 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVL--AGRKTGGYIT-GNITISGYPKK 757
+ VS PG + ++G SG+GK+T LM +L GR T G + + G ++
Sbjct: 24 AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83
Query: 758 QET---FTRISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV 812
+ RI Q+ + S P +T+ + + + L E +K E++E V
Sbjct: 84 EMRKLRGKRI-AMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRA-EARKR-AVELLEQV 140
Query: 813 EL-NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
L +P R+ P + LS R+R+ IA+ L P ++ DEPT+ LD A ++
Sbjct: 141 GLPDPERRDR--YPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL 196
Query: 872 VRN-TVDTGRTVVCTIHQPSI 891
+++ + G V+ H +
Sbjct: 197 LKDLQRELGMAVLFITHDLGV 217
|
Length = 539 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 44/236 (18%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ-RTAAYISQHDVHI 59
+ LLGP SGK+TLL +AG L+ SGR+ NG + R ++ QH
Sbjct: 28 LVALLGPSGSGKSTLLRIIAG-LEQPD--SGRIRLNGQDATRVHARDRKIGFVFQHYALF 84
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVL 119
+TVR+ +AF E+ + K +KA E
Sbjct: 85 KHLTVRDNIAFG-------------LEIRKHPKAK-----------IKARVEE------- 113
Query: 120 TDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 179
L+++ LE +GD +SGGQ++RV + L +DE LD+
Sbjct: 114 ---LLELVQLEG-----LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKV 165
Query: 180 TFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
++ + +R+ ++ T V + E ++ D I+++S+ +I G + V D
Sbjct: 166 RKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 28/196 (14%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT 762
+L VS PG +TAL+G SG+GK+T++ +L + GG + + G P
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG----QVLLDGKP------- 77
Query: 763 RISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
IS Y E +HS V E +L++ L+ + Q E + E + +
Sbjct: 78 -ISQY-EHKYLHSKVSLVGQEPVLFARSLQ--DNIAYGLQSCSFECVKEAAQKAHAHSFI 133
Query: 822 VGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 872
L GE G LS Q++R+ IA L+ NP ++ +DE TS LDA + V + +
Sbjct: 134 SELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQAL 193
Query: 873 RNTVDTGRTVVCTIHQ 888
+ RTV+ H+
Sbjct: 194 YDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 721 LMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQETFTRISGYCEQNDIHSP 776
L+G SG GKTT + ++AG T G YI G PK R QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYALYP 85
Query: 777 FVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836
+TVY+++ + LR P+ + + + + E+ EL+++ L LS QR+
Sbjct: 86 HMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRKP-----KQLSGGQRQ 137
Query: 837 RLTIAVELVANPSIIFMDEPTSGLDAR 863
R+ + +V P + MDEP S LDA+
Sbjct: 138 RVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 45/240 (18%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+ +LGP +GK+TLL AL+G+L SG VT NG ++ + P+ A H
Sbjct: 29 VLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELA-------RHRA 78
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
+ +LAF Q V ++ R +G +P+ D + +A A T
Sbjct: 79 VLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREPEEDERIAAQALA--------AT 123
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM------VGPALALFMDEISTG 174
D + GL D R +SGG+++RV ++ V LF+DE ++
Sbjct: 124 D----LSGLAGRD--------YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171
Query: 175 LDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234
LD + + RQ G AV+++L D I+LL +++ G + VL
Sbjct: 172 LDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Query: 721 LMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFTRISGYCEQNDIHSPF 777
L+G SG GKTTL+ +LAG + G + ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837
+TV E++ + +R +V K + E + LV+L LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQR 108
Query: 838 LTIAVELVANPSIIFMDEPTSGLDAR 863
+ +A LV P I+ +DEP S LD +
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L ++ G L ++G SG GKTTL++++AG Y G+IT+ G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825
G QN+ P+ V +++ + L V+ + ++++ V L + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
LS QR+R+ IA L ANP ++ +DEP LDA
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 57/200 (28%), Positives = 84/200 (42%), Gaps = 31/200 (15%)
Query: 707 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS- 765
VS PG + ++G SG+GK+TL+ LAGR G T + ++S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTATYIMRSGAELELYQLSE 77
Query: 766 -----------GYCEQNDIH------SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEI 808
G+ QN S + E L+ + R + + Q
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLM-AIGARHYGNIRATAQDW----- 131
Query: 809 MELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
+E VE++P R + LP S ++RL IA LV P ++FMDEPT GLD A +
Sbjct: 132 LEEVEIDPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 187
Query: 869 MRTVRNTV-DTGRTVVCTIH 887
+ +R V D G V+ H
Sbjct: 188 LDLLRGLVRDLGLAVIIVTH 207
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 59/198 (29%), Positives = 88/198 (44%), Gaps = 31/198 (15%)
Query: 709 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPK--------K 757
VS PG + ++G SG+GKTTL+ ++GR T G +T G P+ +
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTVTYRMRDGQPRDLYTMSEAE 82
Query: 758 QETFTRIS-GYCEQNDIH------SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIME 810
+ R G+ QN S + E L+ + R + +E Q +E
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNIRAEAQDW-----LE 136
Query: 811 LVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
VE++ R + LP S ++RL IA LV P ++FMDEPT GLD A ++
Sbjct: 137 EVEIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 192
Query: 871 TVRNTV-DTGRTVVCTIH 887
+R V + G VV H
Sbjct: 193 LLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-09
Identities = 55/170 (32%), Positives = 80/170 (47%), Gaps = 16/170 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---QETFT 762
L+ VS PG A++G SG+GK+TL+ +L G +T +G++ G +
Sbjct: 469 LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGLDVQAVR 526
Query: 763 RISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETQKM--FIEEIMELVELNPLRQ 819
R G QN + S +++E++ A L + E +M E+I + P+
Sbjct: 527 RQLGVVLQNGRLMSG--SIFENIAGGA--PLTLDEAWEAARMAGLAEDIRAM----PMGM 578
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
V G LS QR+RL IA LV P I+ DE TS LD R AIV
Sbjct: 579 HTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 51/217 (23%), Positives = 88/217 (40%), Gaps = 46/217 (21%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 759
EDK +L GV+ + G + A+MG +G+GK+TL +AG + +G I G
Sbjct: 11 EDK-EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG------ 63
Query: 760 TFTRISGYCEQNDIHSPFVTVYESL---LYSAWLRLPPEVDSETQKMFI----------- 805
D+ + E L+ A+ + P E+ + F+
Sbjct: 64 -----------QDLLE--LEPDERARAGLFLAF-QYPEEIPGVSNLEFLRSALNARRSAR 109
Query: 806 -EEIMELVELNPLRQ---SLVGLPGE-------SGLSTEQRKRLTIAVELVANPSIIFMD 854
EE ++L++ L + +L+G+ E G S ++KR I + P + +D
Sbjct: 110 GEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILD 169
Query: 855 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
E SGLD A IV + + R+ + H +
Sbjct: 170 EIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 5e-09
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 24/193 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L G+ + G + ++G SG+GK+TL+ + G I + ++ K
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELR 75
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
+ G Q P +TV E++ + P +V ++ E +EL+E V
Sbjct: 76 QKVGMVFQQFNLFPHLTVLENITLA-----PIKVKGMSKAEAEERALELLEK-------V 123
Query: 823 GL-------PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
GL P + LS Q++R+ IA L NP ++ DEPTS LD V+ +++
Sbjct: 124 GLADKADAYPAQ--LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDL 181
Query: 876 VDTGRTVVCTIHQ 888
+ G T+V H+
Sbjct: 182 AEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 6e-09
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 16/177 (9%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP------KKQ 758
+L VS + G L+G SG GK+TL +L G + G ++ G K++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDRKQR 83
Query: 759 ETFTRISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
F R Q+ + P +TV + + LR +D QK I E++++V L
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
+ LP + LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 142 --EDADKLPRQ--LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 7e-09
Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 22/193 (11%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETF 761
LL+ +S F G +T L+G +G+GK+TL+ +L GR G I + P + + F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAF 83
Query: 762 TRISGYCEQNDIHSPFVTVYESLL------YSAWLRLPPEVDSETQKMFIEEIMELVELN 815
R Y Q + +TV E + + A R D E +EE + LV L
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAA-DREK----VEEAISLVGLK 138
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RN 874
PL LV LS +R+R IA+ + + + +DEPTS LD V+ V R
Sbjct: 139 PLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193
Query: 875 TVDTGRTVVCTIH 887
+ + G TV+ +H
Sbjct: 194 SQERGLTVIAVLH 206
|
Length = 265 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 8e-09
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 17/168 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-------KK 757
+L+ VS + G + A++G SG+GK+TL+ +L G T +G++ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL 817
E + G+ Q P T E++ +P + + +E++ L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENV------AMPLLIGKKKPAEINSRALEMLAAVGL 135
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 865
P E LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 136 EHRANHRPSE--LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 9e-09
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 20/162 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGN-ITISGYPKKQET 760
L GV+ + G +L+G SG GK+TL+++++G + T G + G IT G P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-PDRMVV 59
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
F QN P++TV E+ + A R+ P++ ++ +EE + LV L ++
Sbjct: 60 F--------QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVG---LTEA 107
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
PG+ LS ++R+ IA L P ++ +DEP LDA
Sbjct: 108 ADKRPGQ--LSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 53/241 (21%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+T L+GP +GK+TLL A+ G L K SG + G + + + Y+ Q
Sbjct: 32 ITALIGPNGAGKSTLLKAILGLL--KPS-SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDR 88
Query: 61 E--MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
+TV++ + G + L +++KE + A
Sbjct: 89 SFPITVKDVVLL-----GRYGKKGWFRRLNKKDKEK-----------VDEA--------- 123
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
L+ +G+E D +G+ +SGGQK+RV + L +DE TG+D +
Sbjct: 124 -----LERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173
Query: 179 TTFQIVNSI----RQNIHILNGTAVISL-LQPAPETYDLFDDIILLSDAQIVYQGPRELV 233
+I + + ++ +L +++ L FD +I L+ ++ GP E V
Sbjct: 174 GQKEIYDLLKELRQEGKTVL----MVTHDLGLVM---AYFDRVICLNR-HLIASGPPEEV 225
Query: 234 L 234
L
Sbjct: 226 L 226
|
Length = 254 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 65/237 (27%), Positives = 92/237 (38%), Gaps = 60/237 (25%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQH-DVHIGE- 61
LLG +GKTTLL +A L SG+VT +G R +++ + V GE
Sbjct: 33 LLGENGAGKTTLLRMIATLLIPD---SGKVTIDG-----VDTVRDPSFVRRKIGVLFGER 84
Query: 62 -----MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
+T RE L + AR L L+R+E +A I K
Sbjct: 85 GLYARLTARENLKYFAR----------LNGLSRKEIKA------RIAELSKR-------- 120
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 176
L L D VG S G K++V +V L +DE ++GLD
Sbjct: 121 ----------LQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165
Query: 177 SSTTFQIVNSIRQNIHILN--GTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231
T + + I+Q L G AVI E L D +I+L ++V +G E
Sbjct: 166 IRTRRKFHDFIKQ----LKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIE 218
|
Length = 245 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 22/169 (13%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISG---YPKKQE 759
L G+ F +TAL+G SG GK+T + L G ITGN+++ G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 760 T--FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL--- 814
+ G Q PF ++YE+++Y LRL D +E ++ +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAIWDE 137
Query: 815 --NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
+ L +S + L G Q++R+ IA L P +I +DEPTS LD
Sbjct: 138 VKDHLHESALSLSGG------QQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 15/189 (7%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP----KKQET 760
+L+GV + R G L L+G +GAGKTTL+ + G T G + ++G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 761 FTRISGYCEQNDIHSPFV--TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
R++ + + F V E R +ET + +E ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTW--TETDRAAVERAMERTGVAQFA 133
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
V + LS +R+R+ +A L ++ +DEPT+ LD + VR VD
Sbjct: 134 DRPV-----TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 879 GRTVVCTIH 887
G+T V IH
Sbjct: 189 GKTAVAAIH 197
|
Length = 402 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query: 720 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS---GYCEQN---DI 773
A++G +GAGK+TL G +G++ I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 774 HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833
SP TV + + + + +D ET + + ++ L LR + LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGG 141
Query: 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 888
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197
|
Length = 277 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 715 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNITISGYPKKQETFTRISGYCEQN 771
G L L+G +GAGKTTL+ R G I G + ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 772 DIHS-----PFVTVYESLLYS-----AWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
H P ++V +++ WLR P D + + + V L L
Sbjct: 58 --HEFAWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRP 110
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
VG LS QR+R+ +A L PS++ +DEP +GLD ++ G
Sbjct: 111 VG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 882 VVCTIH 887
++ T H
Sbjct: 166 ILMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-08
Identities = 52/222 (23%), Positives = 87/222 (39%), Gaps = 45/222 (20%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDV 57
L+GP +GK+TLL L G +D G + NG + + + A++ QH
Sbjct: 350 RVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHP- 405
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ T+ E + LAR + A+ E +EA
Sbjct: 406 FLFAGTIAENIR-----------------LARPD----------------ASDAEIREAL 432
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
V L DT +G+ G+SGGQ +R+ + A L +DE + LD+
Sbjct: 433 ERAGLDEFVAALPQGLDTPIGEGG-AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDA 491
Query: 178 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 219
T +++ ++R + G V+ L+ L D I++L
Sbjct: 492 ETEAEVLEALRA---LAQGRTVL-LVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-08
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 38/170 (22%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 759
+ +LL +S G A++G +GAGK+TL+ +LAG + G ++G + + G K
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG-ELGP-LSGTVKV-GETVK-- 386
Query: 760 TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
GY +Q+ +T + E + +R
Sbjct: 387 -----IGYFDQH--------------RDELD------PDKTVLEELSEGFPDGDEQEVRA 421
Query: 820 SL--VGLPGE------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
L G GE LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 38/189 (20%)
Query: 715 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGY-P-KKQETFTRISGYCEQ 770
G + +G +GAGK+T + +L G T G + ++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGK----VRVNGKDPFRRREEYLRSIGLV-- 102
Query: 771 NDIHSPFVTVYESLLYSAW----------LRLPPEVDSETQKMFIEEIMELVELNP-LRQ 819
+ L W L+L E+ + ++ + E+++L L+
Sbjct: 103 -------MGQKLQLW---WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW 152
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDT 878
+ LS QR R +A L+ P ++F+DEPT GLD A A + ++ +
Sbjct: 153 PV------RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206
Query: 879 GRTVVCTIH 887
TV+ T H
Sbjct: 207 QATVLLTTH 215
|
Length = 325 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 19/190 (10%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L G+S + G + ++G SG+GK+TL+ L G G IT + G K R
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
G Q P +TV E++ + P +V ++ E+ +EL+E VG
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVTLA-----PVKVKKLSKAEAREKALELLEK-------VG 125
Query: 824 LPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
L + + LS Q++R+ IA L +P ++ DEPTS LD V+ +++ +
Sbjct: 126 LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185
Query: 879 GRTVVCTIHQ 888
G T++ H+
Sbjct: 186 GMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 22/186 (11%)
Query: 712 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--YPKKQETFTRISGYCE 769
F G +TA++G SG+GK+TL++++AG +T +G + I+G +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 770 QNDIHSPFVTVYES--LLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827
+N++ +TV ++ L S L+L E + IE + V L L LPGE
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAE-----DRQAIEVALARVGLAGL---EKRLPGE 128
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGRTVVC 884
LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T TV+
Sbjct: 129 --LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKMTVLM 184
Query: 885 TIHQPS 890
HQP
Sbjct: 185 VTHQPE 190
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (136), Expect = 2e-08
Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 15/181 (8%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQET--FTRISGYC 768
+ G TAL+G +G+GK+TL+ L G + T G + G+I +S K++E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 769 EQNDIHSPFVTVYESLLYSAWLRLPPE--VDSETQKMFIEEIMELVELNPLRQSLVGLPG 826
Q P ++E + P + E + E +E+V L + P
Sbjct: 90 FQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSPF 143
Query: 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 886
E LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 144 E--LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201
Query: 887 H 887
H
Sbjct: 202 H 202
|
Length = 288 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 3e-08
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 18/180 (10%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKT--GGYITGN-ITISGYPKKQETFTRISGYCEQND 772
G + A+MG SGAGK+TL++++AG G I N + +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 773 IHSPFVTVYESLLYSAWLRLPPEVD-SETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831
+TV +++ L L P + + Q+ + + + V + L LP + LS
Sbjct: 82 F--AHLTVRQNI----GLGLHPGLKLNAEQQEKVVDAAQQVGIADY---LDRLPEQ--LS 130
Query: 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 890
QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H S
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-08
Identities = 50/168 (29%), Positives = 70/168 (41%), Gaps = 25/168 (14%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--YPKKQETFTR 763
L V+ PG + AL+G +GAGK+TLM VL+G G ITI+ Y K
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLDHKLAA 78
Query: 764 ISG----YCEQNDIHSPFVTVYESLLYSAWLRLP-------PEVDSETQKMFIEEIMELV 812
G Y E + I +TV E+L R +D ++ ++ V
Sbjct: 79 QLGIGIIYQELSVIDE--LTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRV 133
Query: 813 ELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860
L V LS ++ L IA L+ + +I MDEPTS L
Sbjct: 134 GLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
Length = 510 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 3e-08
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 32/181 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 755
L G+S + A +G SG GK+T + D++ + + G I I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 756 KKQET--FTRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV 812
K + + G Q +PF +++E++ Y LR+ D+ + +EE ++
Sbjct: 75 KGVQVDELRKNVGMVFQRP--NPFPKSIFENVAYG--LRVNGVKDNAFIRQRVEETLKGA 130
Query: 813 EL-----NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 867
L + L++S L G Q++RL IA + +PS++ MDEP S LD + A
Sbjct: 131 ALWDEVKDKLKESAFALSGG------QQQRLCIARAMAVSPSVLLMDEPASALDPISTAK 184
Query: 868 V 868
V
Sbjct: 185 V 185
|
Length = 250 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-08
Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 42/191 (21%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVH 58
T L+G +GK+TLL L G L G + NG + + P ++ +++SQ+ +
Sbjct: 350 TALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNP-Y 405
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
+ T+RE + + ++E + AA +A
Sbjct: 406 LFAGTIRENILLA--------------RPDASDEE------------IIAAL---DQAG- 435
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
L ++ K GL DT++G E G+SGGQ +R+ ++ PA L +DE + LD+
Sbjct: 436 LLEFVPKPDGL----DTVIG-EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE 490
Query: 179 TTFQIVNSIRQ 189
T I+ ++++
Sbjct: 491 TEQIILQALQE 501
|
Length = 559 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 4e-08
Identities = 59/247 (23%), Positives = 86/247 (34%), Gaps = 70/247 (28%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ------RTAAYISQH 55
++GP SGK+TLL + G L SG V +G + R + Q
Sbjct: 29 LAIIGPSGSGKSTLLRLIVG-LLRPD--SGEVLIDGEDISGLSEAELYRLRRRMGMLFQS 85
Query: 56 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDID--VYMKAAATEG 113
+TV E +AF R E + +I V K
Sbjct: 86 GALFDSLTVFENVAFPLR-------------------EHTRLSEEEIREIVLEK------ 120
Query: 114 QEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-------- 165
L+ +GL +D + +SGG KKRV ALA
Sbjct: 121 ----------LEAVGLRGAEDLYPAE-----LSGGMKKRV---------ALARALALDPE 156
Query: 166 -LFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQI 224
L DE + GLD + I + IR ++ G I + + + D I +L D +I
Sbjct: 157 LLLYDEPTAGLDPIASGVIDDLIR-SLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKI 215
Query: 225 VYQGPRE 231
V +G E
Sbjct: 216 VAEGTPE 222
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 18/188 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L G+S + G TAL+G +GAGK+TL+ L G G + + G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 766 ---GYCEQNDIHSPFV-TVYESLLYSAW-LRL-PPEVDSETQKMFIEEIMELVELNPLRQ 819
G Q+ F TV++ + + + L EV+ EE ++ V + R
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV-----EEALKAVRMWDFRD 133
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 879
LS Q+KR+ IA L +P +I +DEP + LD R +M + + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 880 RTVVCTIH 887
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 26/188 (13%)
Query: 712 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFTRISGYC 768
G + A++G SGAGK+TL++++AG +T G + + + P + + + +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML--FQ 78
Query: 769 EQNDIHSPFVTVYES--LLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826
E N +TV ++ L S L+L + Q+ +E V L L LPG
Sbjct: 79 ENNLF--AHLTVAQNIGLGLSPGLKL-----NAEQREKVEAAAAQVGLAGF---LKRLPG 128
Query: 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRTV 882
E LS QR+R+ +A LV I+ +DEP S LD RA M + + + + T+
Sbjct: 129 E--LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTL 183
Query: 883 VCTIHQPS 890
+ H P
Sbjct: 184 LMVTHHPE 191
|
Length = 231 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 56/186 (30%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
L ++ +TAL+G SG GK+T + D++ K I G + + G
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----- 69
Query: 759 ETFTRISGYCEQNDIHS-------------PF-VTVYESLLYSAWLRLPPEVDSETQKMF 804
I Y D++ PF +++Y+++ Y P K
Sbjct: 70 ---QDI--YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG------PRTHGIKDKKK 118
Query: 805 IEEIMELVELNPLRQSLVGLPGES---------GLSTEQRKRLTIAVELVANPSIIFMDE 855
++EI+E L+ + L E GLS Q++RL IA L P ++ MDE
Sbjct: 119 LDEIVE----KSLKGA--ALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDE 172
Query: 856 PTSGLD 861
PTS LD
Sbjct: 173 PTSALD 178
|
Length = 250 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 6e-08
Identities = 52/199 (26%), Positives = 89/199 (44%), Gaps = 15/199 (7%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT 762
+L G++ F +T L+G +G GK+TL L+G R G + Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 763 R--ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
R ++ + + + + + +S LR ++E + ++E + LV+ R
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFS--LRNLGVPEAEITRR-VDEALTLVDAQHFRHQ 132
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 133 PI-----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGN 187
Query: 881 TVVCTIHQPSID-IFESFD 898
V+ + H ID I+E D
Sbjct: 188 HVIISSH--DIDLIYEISD 204
|
Length = 271 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 6e-08
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 35/197 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIT-GNITISGYPKKQETF 761
L +S + +PG ++G +G+GK++L+ L R + G I + IS +
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGL-HDLR 77
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLR--LPPE---VDSETQKMFIEEIMELVELNP 816
+RIS Q + +L+S +R L P D E + + +E V L
Sbjct: 78 SRISI-IPQ-----------DPVLFSGTIRSNLDPFGEYSDEE-----LWQALERVGLKE 120
Query: 817 LRQSLVG------LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
+SL G G LS QR+ L +A L+ I+ +DE T+ +D A++ +
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 871 TVRNTVDTGRTVVCTIH 887
T+R TV+ H
Sbjct: 181 TIR-EAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-08
Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 32/199 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQETFT 762
LNG+S G A++G SGAGK+T++ +L +G+ITI G Q++
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITIDGQDIRDVTQQSLR 336
Query: 763 RISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL 817
R G Q ND T+ ++ Y P+ +E + E +++
Sbjct: 337 RAIGIVPQDTVLFND------TIAYNIKYGR-----PDATAEE----VGAAAEAAQIHDF 381
Query: 818 RQSL-VGLP---GESGL--STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
QSL G GE GL S +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 382 IQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAA 441
Query: 872 VRNTVDTGRTVVCTIHQPS 890
+R V GRT + H+ S
Sbjct: 442 LRE-VSAGRTTLVIAHRLS 459
|
Length = 497 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 7e-08
Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 50/232 (21%)
Query: 1 MTLLLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDV 57
LLGP GKTTLL +AG + D SG + +G + P +R + Q
Sbjct: 28 FLALLGPSGCGKTTLLRLIAGLERPD-----SGEILIDGRDVTGVPPERRNIGMVFQDYA 82
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+TV E +AF + +GV E+ R +E
Sbjct: 83 LFPHLTVAENIAFGLKLRGVPKA-----EIRARVREL----------------------- 114
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLD 176
L+++GLE + + +SGGQ++RV + P+L L +DE + LD
Sbjct: 115 ------LELVGLE-----GLLNRYPHELSGGQQQRVALARALAREPSL-LLLDEPLSALD 162
Query: 177 SSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
+ ++ +++ + G I + E L D I ++++ +IV G
Sbjct: 163 AKLREELREELKE-LQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 7e-08
Identities = 55/241 (22%), Positives = 95/241 (39%), Gaps = 61/241 (25%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYIS---QHDVH 58
LLGP +GK+TL L ++ G+++ GH + P+ A + Q
Sbjct: 30 VALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAALARLGVVFQQPTL 85
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
+++VR+ L + A G L+R E A I
Sbjct: 86 DLDLSVRQNLRYHAALHG----------LSRAEARARIAEL------------------- 116
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDS 177
L LGL D+ VR ++GG ++RV ++ PAL L +DE + GLD
Sbjct: 117 -----LARLGL-----AERADDKVRELNGGHRRRVEIARALLHRPAL-LLLDEPTVGLDP 165
Query: 178 STTFQIVNSIR-----QNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRE 231
++ I +R Q + +L T ++ ++ D +++L +++ G E
Sbjct: 166 ASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVLHRGRVLADGAAAE 218
Query: 232 L 232
L
Sbjct: 219 L 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 7e-08
Identities = 53/179 (29%), Positives = 77/179 (43%), Gaps = 32/179 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGNITISGYPKK 757
L ++ + +TAL+G SG GK+TL+ D++ G R TG + I
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 758 QETFTRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
R G Q +PF ++YE++ Y P + E K ++ I+E
Sbjct: 82 VVALRRKIGMVFQRP--NPFPKSIYENVAYG------PRIHGEKNKKTLDTIVE----KS 129
Query: 817 LRQSLVGLPGES---------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
L+ + L E LS Q++RL IA L NP +I MDEP S LD A A
Sbjct: 130 LKGA--ALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 8e-08
Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 21/159 (13%)
Query: 718 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKKQETFTRIS-G 766
+TAL+G SG GK+TL+ D++ G K ITG +T+ G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 767 YCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825
Q +PF +++YE++ Y LR D + +E + L + +
Sbjct: 87 MVFQKP--NPFPMSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH 142
Query: 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 864
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 143 A-FGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 58/236 (24%), Positives = 95/236 (40%), Gaps = 61/236 (25%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
++GP SGK+T LL + G LD SG V +G + + + AA+ + HIG
Sbjct: 32 FVAIVGPSGSGKST-LLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRR---HIG 85
Query: 61 ----------EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAA 110
++T E + GV + E R +E
Sbjct: 86 FVFQSFNLLPDLTALENVELPLLLAGVPKK-----ERRERAEEL---------------- 124
Query: 111 TEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE-MMVGPALALFMD 169
L+ +GL D L + +SGGQ++RV + P + + D
Sbjct: 125 -------------LERVGLG---DRL--NHYPSELSGGQQQRVAIARALANDPKI-ILAD 165
Query: 170 EISTG-LDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQI 224
E TG LDS T +++ +R+ ++ GT ++ ++ PE + D II L D +I
Sbjct: 166 E-PTGNLDSETGKEVMELLRE-LNKEAGTTIV-VVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETF 761
L+ VS + G + AL+G +G+GK+TL+ +AG +G I I G E
Sbjct: 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEEL 71
Query: 762 TRISGYCEQ 770
R GY Q
Sbjct: 72 RRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 49/199 (24%), Positives = 68/199 (34%), Gaps = 48/199 (24%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGE 61
+L GP SGKTTLL +AG L +G + +G +D+ Y+ +
Sbjct: 31 LVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPA 87
Query: 62 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTD 121
+TV E L F A G + DI AAA E L
Sbjct: 88 LTVAENLEFWAAFLG--------------------GEELDI-----AAALEAVGLAPLAH 122
Query: 122 YYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 181
L S GQK+RV ++V +DE + LD++
Sbjct: 123 LPFGYL------------------SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVA 164
Query: 182 QIVNSIRQNIHILNGTAVI 200
IR H+ G VI
Sbjct: 165 LFAELIR--AHLAQGGIVI 181
|
Length = 207 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 19/188 (10%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTR 763
LL +S G L L G +GAGKTTL+ ++AG G I K++ T
Sbjct: 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTY 72
Query: 764 ISGYC---EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
C ++ I +P++T+ E+ LY ++ + I E+ L L L
Sbjct: 73 QKQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDY 123
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 124 PCGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGG 178
Query: 881 TVVCTIHQ 888
V+ T HQ
Sbjct: 179 AVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 6/57 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY------ITGNITISGYP 755
+L +S PG +TAL+G +GAGK+TL+ LAG TGG +TG++T++G P
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEP 72
|
Length = 272 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 57/220 (25%), Positives = 86/220 (39%), Gaps = 42/220 (19%)
Query: 695 LQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG- 753
L +EDK +L G++ RPG + A+MG +G+GK+TL LAGR+ G + G
Sbjct: 7 LHVSVEDK-AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGK 65
Query: 754 --------------------YPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP 793
YP I G Q + + V R
Sbjct: 66 DLLELSPEDRAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQ 112
Query: 794 PEVDSETQKMFIEEIMELVELNP--LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSII 851
+D + +EE + L+++ L +S+ G S ++KR I V P +
Sbjct: 113 EPLDRFDFQDLMEEKIALLKMPEDLLTRSV-----NVGFSGGEKKRNDILQMAVLEPELC 167
Query: 852 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
+DE SGLD A IV V + D R+ + H I
Sbjct: 168 ILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 50/181 (27%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH----GMDEFVPQRTAAYISQHD 56
M LLGP +GKTTL+ LA SG + +G + +R Y+ Q
Sbjct: 27 MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKL--RRRIGYLPQEF 81
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
TVRE L + A +G+ S+ +
Sbjct: 82 GVYPNFTVREFLDYIAWLKGIPSK--------EVKARV---------------------- 111
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGL 175
D L+++ L + + +SGG ++RV + +VG P++ L +DE + GL
Sbjct: 112 ----DEVLELVNL-----GDRAKKKIGSLSGGMRRRVGIAQALVGDPSI-LIVDEPTAGL 161
Query: 176 D 176
D
Sbjct: 162 D 162
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-07
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 44/202 (21%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNG---HGMDEFVPQRTAAYISQHDVH 58
+LGP SGK+TLL LAG LD G VT +G +D+ +R + +Q D H
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDEVRRRVSVCAQ-DAH 419
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
+ + TVRE L + + ++ L R G+ A
Sbjct: 420 LFDTTVRENLRLAR---PDATDEELWAALER----VGLADWL--------RALPD----- 459
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
GL DT++G E +SGG+++R+ ++ A L +DE + LD+
Sbjct: 460 ---------GL----DTVLG-EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAE 505
Query: 179 TTFQIVNSIRQNIHILNGTAVI 200
T +++ + L+G V+
Sbjct: 506 TADELLEDLLA---ALSGRTVV 524
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-07
Identities = 60/253 (23%), Positives = 93/253 (36%), Gaps = 81/253 (32%)
Query: 10 SGKTTLLLALAGKLDSKLK-FSGRVTYNG---HGMDE------------FVPQRTAAYIS 53
SGK+TL LAL G L + SG V +G G+ E + Q ++
Sbjct: 46 SGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLN 105
Query: 54 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEG 113
MT+ D + E R +
Sbjct: 106 ------PVMTIG----------------DQIREALRLHGKG-----------------SR 126
Query: 114 QEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFM 168
EA L+ +GL D D +SGG ++RV M+ ALA L
Sbjct: 127 AEARKRAVELLEQVGLP---DPERRDRYPHQLSGGMRQRV-----MIAMALALKPKLLIA 178
Query: 169 DEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL------FDDIILLSDA 222
DE +T LD +T QI++ ++ ++ G AV+ + T+DL D ++++
Sbjct: 179 DEPTTALDVTTQAQILDLLK-DLQRELGMAVLFI------THDLGVVAELADRVVVMYKG 231
Query: 223 QIVYQGPRELVLD 235
+IV GP E +L
Sbjct: 232 EIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP------KK 757
LN VS + + G AL+G SG GK+TL +L G + G N++ G P +
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG----NVSWRGEPLAKLNRAQ 83
Query: 758 QETFTRISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
++ F R Q+ I + P TV E + LR +D + E++ V+L+
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
L P + LS Q +R+ +A L P ++ +DE S LD
Sbjct: 142 D--SVLDKRPPQ--LSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 29/180 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIT---GNITISGYPKKQET 760
LNG+S G ++G +GAGK+TL++ +AG T G I ++T K+
Sbjct: 22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81
Query: 761 FTRI-----SGYCEQNDIHSPFVTVYESLLYSAWLR-----LPPEVDSETQKMFIEEIME 810
R+ +G P +T+ E+L A R L ++ + F E +
Sbjct: 82 LARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALNERRRSSFRERLAR 133
Query: 811 LVE-LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
L L +GL LS QR+ L++ + + P I+ +DE T+ LD + A VM
Sbjct: 134 LGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYITG-NITISGYPKK 757
+N A G + +MG+SG+GK+T + +L AG+ +I G NI +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL 817
+E + G Q P +T+ ++ L + +K E+ +EL++L L
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELL---GWPEQERK---EKALELLKLVGL 119
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
+ P E LS ++R+ +A L A P I+ MDE S LD
Sbjct: 120 EEYEHRYPDE--LSGGMQQRVGLARALAAEPDILLMDEAFSALD 161
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 3e-07
Identities = 58/243 (23%), Positives = 91/243 (37%), Gaps = 74/243 (30%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAA-------YIS 53
++GP SGK+T LL L G LD SG V NG + + + A ++
Sbjct: 33 FVAIVGPSGSGKST-LLNLLGGLDKPT--SGEVLINGKDLTKLSEKELAKLRRKKIGFVF 89
Query: 54 Q-HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATE 112
Q ++ + ++TV E + G A R K A
Sbjct: 90 QNFNL-LPDLTVLENVELPLLIAGK---------SAGRRKRA------------------ 121
Query: 113 GQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LF 167
+ L+VLGLE + + +SGGQ++RV + AL +
Sbjct: 122 -------AEELLEVLGLE----DRLLKKKPSELSGGQQQRV-----AIARALINNPKIIL 165
Query: 168 MDEISTG-LDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL-----FDDIILLSD 221
DE TG LDS T +++ +R+ T ++ T+D D +I L D
Sbjct: 166 ADEP-TGNLDSKTAKEVLELLRELNKERGKTIIMV-------THDPELAKYADRVIELKD 217
Query: 222 AQI 224
+I
Sbjct: 218 GKI 220
|
Length = 226 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 3e-07
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 52/200 (26%)
Query: 2 TLLLGPPCSGKTTLLLALAGKL--DSKLKFSGRVTYNGH---GMDEFVPQRTAAYIS--- 53
L+GP +GKTTL ++G L SG V ++G G+ + I
Sbjct: 29 HGLIGPNGAGKTTLFNLISGFLRPT-----SGSVLFDGEDITGLPPH--EIARLGIGRTF 81
Query: 54 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEG 113
Q E+TV E + +A+ + + +L ARRE+ + A E
Sbjct: 82 QIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREERE-----------ARERAEE- 126
Query: 114 QEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE----MMVGPALALFMD 169
L+ +GL D + D +S GQ++R+ E + P L L +D
Sbjct: 127 ---------LLERVGL---AD--LADRPAGELSYGQQRRL---EIARALATDPKL-LLLD 168
Query: 170 EISTGLDSSTTFQIVNSIRQ 189
E + GL+ T ++ IR+
Sbjct: 169 EPAAGLNPEETEELAELIRE 188
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 57/232 (24%), Positives = 84/232 (36%), Gaps = 46/232 (19%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGM--DEFVPQRTAAYISQHDVHIGE 61
LLGP +GKTT + L L SGR T GH + + +R + Q E
Sbjct: 31 LLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDE 87
Query: 62 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTD 121
+T E L AR GV E R E
Sbjct: 88 LTGWENLYIHARLYGVPGA-----ERRERIDEL--------------------------- 115
Query: 122 YYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 181
L +GL D +V+ SGG ++R+ +V LF+DE + GLD T
Sbjct: 116 --LDFVGL-----LEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRA 168
Query: 182 QIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PREL 232
+ I + + G ++ E L D + ++ +I+ +G P EL
Sbjct: 169 HVWEYIEK-LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 3e-07
Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 23/183 (12%)
Query: 713 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---FTRIS-GYC 768
F +TA +G +GAGKTT + +L G +G + + G K ET R S G C
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGG--KDIETNLDAVRQSLGMC 1008
Query: 769 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828
Q++I +TV E +L+ A L+ E ++ +E ++E L+ R
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNE-----EAQ 1060
Query: 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRTVVCT 885
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++ +
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMS 1116
Query: 886 IHQ 888
H
Sbjct: 1117 THH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 31/183 (16%)
Query: 696 QGILE---DKLMLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGN 748
+GIL+ D +++ +S RPG L+G SG+GK+T L+ ++ + G
Sbjct: 289 KGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GE 341
Query: 749 ITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESL--------LYSAWLRL-PPEVDSE 799
I G P R ++ I F SL + LR+ P + +
Sbjct: 342 IWFDGQPLHN--LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA 399
Query: 800 TQKMFIEEIMELVELNP-LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 858
++ + +ME V L+P R P E S QR+R+ IA L+ PS+I +DEPTS
Sbjct: 400 QREQQVIAVMEEVGLDPETRHRY---PAE--FSGGQRQRIAIARALILKPSLIILDEPTS 454
Query: 859 GLD 861
LD
Sbjct: 455 SLD 457
|
Length = 529 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 44/162 (27%), Positives = 60/162 (37%), Gaps = 53/162 (32%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
++GVS + + G L+G SG GK+TL ++ G T G I G K T
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG----EILFEG---KDITKLS 81
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP---LRQS 820
E ++ + E++E V L R
Sbjct: 82 ---------------------------------KEERRER-VLELLEKVGLPEEFLYRY- 106
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
P E LS QR+R+ IA L NP +I DEP S LD
Sbjct: 107 ----PHE--LSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 3e-07
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 40/184 (21%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+L+GV+ +TALMG SG+GK+TL+ V N I YP+ R+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 765 SG--YCEQNDIHS--------------------PFVTVYESLLYSAWLRLPPEVDSETQK 802
SG Y + DI P ++++E++ L + E Q+
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE 121
Query: 803 MFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
+ +E +L + + P LS Q++RL IA L P ++ DEPT+ LD
Sbjct: 122 R-VRWALEKAQLWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANLDP 179
Query: 863 RAAA 866
A
Sbjct: 180 ENTA 183
|
Length = 250 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 3e-07
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQETFTR 763
L G+S + G AL+G +G GK+TL+ +L T + G I ++G P
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-------- 403
Query: 764 ISGYCEQNDIHSPFVTVYESL-LYSAWLR------LPPEVDSETQKMFIEEIMELVELNP 816
I+ Y E + V + + L+SA LR P D + E+++ V L
Sbjct: 404 IADYSEA-ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA-----LIEVLQQVGLEK 457
Query: 817 LRQSLVGLP---GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
L + GL GE G LS +++RL IA L+ + ++ +DEPT GLDA
Sbjct: 458 LLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509
|
Length = 574 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 23/210 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
LL+ ++ RPG + G SGAGKT+L+ LAG + +G I P
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL--- 459
Query: 765 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL 824
+ Q + P T+ E+L Y P+ + ++ V L L + L
Sbjct: 460 --FLPQRP-YLPQGTLREALCYP---NAAPDFSDAE----LVAVLHKVGLGDLAERLDEE 509
Query: 825 -PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
+ LS +++RL A L+ P +F+DE TS LD + + ++ + TV+
Sbjct: 510 DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVI 568
Query: 884 CTIHQPSIDIFESFDEGIPGVENIKDGYNP 913
H+P+ +F + + G N
Sbjct: 569 SVGHRPT---LWNFHSRQLELLDDAGGQNL 595
|
Length = 604 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 40/166 (24%)
Query: 718 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YITGNITISGYPKKQETFTRISGY 767
+TA++G SG GK+T +++++ KT G Y NI Y +E T +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 768 CEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP- 825
++ + PF ++Y+++ Y P++ K ++EI+E +SL G
Sbjct: 111 FQKPN---PFPKSIYDNVTYG------PKIHGIKDKKTLDEIVE--------KSLRGAAI 153
Query: 826 ----------GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 154 WDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 43/180 (23%), Positives = 62/180 (34%), Gaps = 55/180 (30%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQH-DVHIG 60
L G +GKTTL LAG + SG + NG + +++ Y+ Q D +
Sbjct: 29 IALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLF 85
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
+VRE L + A Q VL
Sbjct: 86 TDSVREELLLGL---------------------------------KELDAGNEQAETVLK 112
Query: 121 D---YYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG-EMMVGPALALFMDEISTGLD 176
D Y LK + +SGGQK+R+ ++ G L L DE ++GLD
Sbjct: 113 DLDLYALK-------------ERHPLSLSGGQKQRLAIAAALLSGKDL-LIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 62/242 (25%), Positives = 92/242 (38%), Gaps = 53/242 (21%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNG---HGMDEFVPQRTAAYISQHDV 57
+T LLGP SGK+TLL LAG L +G V G HG+ R A + Q
Sbjct: 29 LTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSD 85
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+TVR+ +A L + R AG D D
Sbjct: 86 TAVPLTVRDVVA--------------LGRIPHRSLWAG---DSPHDA------------- 115
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFMDEIS 172
+ D L L + + D + +SGG+++RV V ALA L +DE +
Sbjct: 116 AVVDRALARTEL-----SHLADRDMSTLSGGERQRVH-----VARALAQEPKLLLLDEPT 165
Query: 173 TGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPREL 232
LD + + +R+ G V++ L D +++L ++V GP
Sbjct: 166 NHLDVRAQLETLALVRE--LAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPRE 223
Query: 233 VL 234
VL
Sbjct: 224 VL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 59/262 (22%), Positives = 105/262 (40%), Gaps = 61/262 (23%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAA---YIS-QHDVHI 59
++GP SGK+TL +AG ++ SG + + G + E P A +++ Q+ I
Sbjct: 31 IMGPNGSGKSTLSKTIAGHPSYEVT-SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVL 119
++ E L + ARR + +D + +
Sbjct: 90 PGVSNLEFLRSALN--------------ARRSARG----EEPLD--LLDFLKLLKAK--- 126
Query: 120 TDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSS 178
L +LG+ D+ + + G SGG+KKR +M + P LA+ +DEI +GLD
Sbjct: 127 ----LALLGM---DEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAI-LDEIDSGLDID 178
Query: 179 TT---FQIVNSIRQN----IHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231
+ +N +R+ + I + +++ ++P D + +L D +IV G E
Sbjct: 179 ALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP--------DYVHVLLDGRIVKSGDVE 230
Query: 232 LVLDFFESMGFKCPERKGVADF 253
L + E KG
Sbjct: 231 LAKEL---------EEKGYDWV 243
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 39/183 (21%)
Query: 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 758
L+ +N V+ R + +L+G +GAGKTT+ + L G + TGG I I G P Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 759 ------ETFTRISGYCEQNDIHSPFVTVYESLL-----------YSAWLRLPPEVDSETQ 801
TF + + E +TV E+LL +S L+ P +E++
Sbjct: 78 ARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE 129
Query: 802 KM-FIEEIMELVELNPL--RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 858
+ +E V L RQ+ L+ Q++RL IA +V P I+ +DEP +
Sbjct: 130 ALDRAATWLERVGLLEHANRQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEPAA 182
Query: 859 GLD 861
GL+
Sbjct: 183 GLN 185
|
Length = 255 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 57/187 (30%), Positives = 84/187 (44%), Gaps = 43/187 (22%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 755
L V +TA +G SG GK+T + D + G + +TG IT+ G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYD 90
Query: 756 KKQ---ETFTRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDS-ETQKMFIEEIME 810
+ E R+ G Q +PF ++YE++ Y P + K ++EI+E
Sbjct: 91 PRLDVVELRARV-GMVFQKP--NPFPKSIYENVAYG------PRIHGLARSKAELDEIVE 141
Query: 811 LVELNPLRQSLVGLPGE---------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
LR++ GL E +GLS Q++RL IA + +P +I MDEP S LD
Sbjct: 142 ----TSLRKA--GLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
Query: 862 ARAAAIV 868
A A V
Sbjct: 196 PIATAKV 202
|
Length = 267 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 5e-07
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 28/183 (15%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGNITISG---YPKKQ 758
L+G+S F LTAL+G SG GK+T + L R ITG I G Y K
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 759 E--TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
+ + G Q PF +VY+++ Y L++ D E +EE
Sbjct: 79 DLVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKELIDQRVEE--------S 127
Query: 817 LRQSLVGLPGESGL-------STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
L+Q+ + + L S Q++R+ IA L P ++ +DEPTS LD +++ +
Sbjct: 128 LKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIE 187
Query: 870 RTV 872
T+
Sbjct: 188 ETL 190
|
Length = 251 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-07
Identities = 71/237 (29%), Positives = 108/237 (45%), Gaps = 43/237 (18%)
Query: 693 MKLQGILEDK----LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--- 743
++L+GI DK + L+G + PG + AL+G +GAGK+T+M VL G + G
Sbjct: 5 LQLKGI--DKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSIL 62
Query: 744 YITGNITISGYPKKQETFTRISGYCEQNDIHS-----PFVTVYESLLY-----SAWLRLP 793
Y+ +T +G QE I IH P +T+ E++ + + R+
Sbjct: 63 YLGKEVTFNGPKSSQEAGIGI--------IHQELNLIPQLTIAENIFLGREFVNRFGRI- 113
Query: 794 PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853
+ +KM+ E L LN LR S L GE LS +++ + IA L +I M
Sbjct: 114 -----DWKKMYAEADKLLARLN-LRFSSDKLVGE--LSIGEQQMVEIAKVLSFESKVIIM 165
Query: 854 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEGIPGVENIKDG 910
DEPT L + R +R GR +V H+ +IFE D+ V +DG
Sbjct: 166 DEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDD----VTVFRDG 217
|
Length = 501 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 50/250 (20%), Positives = 87/250 (34%), Gaps = 82/250 (32%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH---GMDE-----------FVPQRTA 49
L+G SGK+TL A+ G L SG + ++G + V Q
Sbjct: 36 LVGESGSGKSTLARAILG-LLKP--TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQ--D 90
Query: 50 AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAA 109
S + MT+ E +A R G S+ + + A G+ +
Sbjct: 91 PMSSLNPR----MTIGEQIAEPLRIHGKLSKKEAR-KEAVLLLLVGVGLPEE-------- 137
Query: 110 ATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA---- 165
VL Y +SGGQ++RV + ALA
Sbjct: 138 --------VLNRY-------------------PHELSGGQRQRV-----AIARALALNPK 165
Query: 166 -LFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVI------SLLQPAPETYDLFDDIIL 218
L DE ++ LD S QI++ +++ + G ++ ++ + D + +
Sbjct: 166 LLIADEPTSALDVSVQAQILDLLKK-LQEELGLTLLFITHDLGVVA------KIADRVAV 218
Query: 219 LSDAQIVYQG 228
+ +IV +G
Sbjct: 219 MYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 26/191 (13%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDI 773
R G + L+G +G GK+T + +LAG+ + N+ G + I +++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGK-----LKPNL---GKFDDPPDWDEILDEFRGSEL 75
Query: 774 HSPFVTVYESLLYSAWL-----RLPPEVDSET--------QKMFIEEIMELVELNPLRQS 820
+ F + E + +P V + ++ ++E+++ +EL +
Sbjct: 76 QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR 135
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
+ LS + +R+ IA L + F DEP+S LD + R +R +
Sbjct: 136 NI-----DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190
Query: 881 TVVCTIHQPSI 891
V+ H ++
Sbjct: 191 YVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 6e-07
Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 32/198 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
LN ++ +TAL+G SG GK+T + D++ G K I GN+ G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYS 78
Query: 759 ETFT-----RISGYCEQNDIHSPFV-TVYESLLYSAWLRLPPEVDSETQKMFIEEIME-- 810
F R G Q +PF+ ++Y+++ Y P++ K ++EI+E
Sbjct: 79 NNFDILELRRKIGMVFQTP--NPFLMSIYDNISYG------PKIHGTKDKKKLDEIVEQS 130
Query: 811 LVE---LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 867
L + N ++ L LS Q++RL IA L P++I MDEPTS LD +
Sbjct: 131 LKKSALWNEVKDKLN--TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGK 188
Query: 868 VMRTVRNTVDTGRTVVCT 885
+ + N ++ ++ T
Sbjct: 189 IEELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 7e-07
Identities = 44/178 (24%), Positives = 62/178 (34%), Gaps = 47/178 (26%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVH 58
+ GP +GKTTLL LAG L +G V + G + + Y+
Sbjct: 30 ALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESYHQALLYLGHQPGI 86
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
E+T E L F R G G+ + E A A
Sbjct: 87 KTELTALENLHFWQRFHGSGNA-ATIWE---------------------ALA-------- 116
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 176
+ + GLE D V +S GQ++RV + + PA +DE T LD
Sbjct: 117 ----QVGLAGLE--------DLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 7e-07
Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 43/207 (20%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKK 757
+ L VS G A++G +G+GK+T+ +L G + G I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITIS 74
Query: 758 QETFTRIS---GYCEQN-DIHSPFV--TVYESLLYSAWL---RLPPE-----VDSETQKM 803
+E I G QN D + F+ TV + + + L ++PP+ +D +K+
Sbjct: 75 KENLKEIRKKIGIIFQNPD--NQFIGATVEDDIAFG--LENKKVPPKKMKDIIDDLAKKV 130
Query: 804 FIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+E+ ++ N LS Q++R+ IA L NP II DE TS LD +
Sbjct: 131 GMEDYLDKEPQN--------------LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 864 AAAIV---MRTVRNTVDTGRTVVCTIH 887
+ M +R T +T++ H
Sbjct: 177 GKREIKKIMVDLRKTRK--KTLISITH 201
|
Length = 271 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 14/175 (8%)
Query: 721 LMGVSGAGKTTLMDVL----AGRKTGGYITGN-ITISGYPKKQE--TFTRISGYCEQNDI 773
L+G SGAGK++L+ VL R I GN S P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 774 HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833
P +TV E+L+ + P V ++ + +L++ L+ P LS
Sbjct: 93 LWPHLTVQENLIEA-----PCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLH--LSGG 145
Query: 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 888
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 7e-07
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 13/161 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ--ET 760
+N S G + +MG+SG+GK+TL+ +L T G I I+ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
+ Q+ P TV E++ + ++ P+ + E + E +ELV L
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREER---ALEALELVGLEGYADK 160
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
P E LS ++R+ +A L +P I+ MDE S LD
Sbjct: 161 Y---PNE--LSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 8e-07
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 141 MVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAV 199
V +SGGQ++RV ++ P L L +DE ++GLD ++ +++ +R+ G V
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDL-LLLDEPTSGLDPASRERLLELLRE--LAEEGRTV 133
Query: 200 ISLLQPAPETYDLFDDIILLSDAQ 223
I + D +I+L D +
Sbjct: 134 IIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 9e-07
Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 57/234 (24%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDVHIG 60
++G SGK+TLL LAG SG V +G + + P R Y+ Q DV +
Sbjct: 35 IIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLF 90
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
T+R+ + A P D + ++AA G +T
Sbjct: 91 YGTLRDNITLGA-------------------------PLADDERILRAAELAG-----VT 120
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
D+ V D +G E RG+SGGQ++ V ++ L +DE ++ +D ++
Sbjct: 121 DF---VNKHPNGLDLQIG-ERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176
Query: 181 FQIVNSIRQNIHILNGTAVI------SLLQPAPETYDLFDDIILLSDAQIVYQG 228
++ +RQ +L +I SLL DL D II++ +IV G
Sbjct: 177 ERLKERLRQ---LLGDKTLIIITHRPSLL-------DLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 57/192 (29%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L + + VL + GVSG+GK+TL+ G Y +G + + K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPKF------- 57
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN----PLRQSL 821
S + +FI+++ L+++ L Q L
Sbjct: 58 --------------------------------SRNKLIFIDQLQFLIDVGLGYLTLGQKL 85
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 879
S LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 880 RTVVCTIHQPSI 891
TV+ H +
Sbjct: 140 NTVILIEHNLDV 151
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 60/243 (24%), Positives = 94/243 (38%), Gaps = 53/243 (21%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ--RTA----AYISQ 54
L+GP +GK+TLL L G ++ SG V +G +++ + R I Q
Sbjct: 29 FVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQ 85
Query: 55 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGI-KPDPDIDVYMKAAATEG 113
I ++V E + L RR + P + AA E
Sbjct: 86 QFNLIERLSVLENVLSGR--------------LGRRSTWRSLFGLFPKEEKQRALAALE- 130
Query: 114 QEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE-MMVGPALALFMDEIS 172
+L Y + D L SGGQ++RV +M P L L DE
Sbjct: 131 -RVGLLDKAYQRA-------DQL---------SGGQQQRVAIARALMQQPKLIL-ADEPV 172
Query: 173 TGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL----FDDIILLSDAQIVYQG 228
LD +++ Q+++ +++ T ++SL Q DL D I+ L D +IV+ G
Sbjct: 173 ASLDPASSRQVMDLLKRINREEGITVIVSLHQV-----DLAREYADRIVGLKDGRIVFDG 227
Query: 229 PRE 231
P
Sbjct: 228 PPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 59/252 (23%), Positives = 106/252 (42%), Gaps = 52/252 (20%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ-RTAAYISQHDVHIGEM 62
+LGP SGK+ LL +AG + SG++ NG + P+ R +Y+ Q+ M
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHM 86
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
TV + +A+ G+ R E+ R+ E
Sbjct: 87 TVYKNIAY-----GLKKRKVDKKEIERKVLEIA--------------------------- 114
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 182
++LG+ D L+ + +SGG+++RV +V L +DE + LD T +
Sbjct: 115 --EMLGI----DHLL-NRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEK 167
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESMGF 242
+ +++ I G V+ + E + L D + ++ + +++ G E V F
Sbjct: 168 LREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV--------F 218
Query: 243 KCPERKGVADFL 254
K P+ + VA+FL
Sbjct: 219 KKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 61/259 (23%), Positives = 92/259 (35%), Gaps = 60/259 (23%)
Query: 4 LLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEFVPQ-RTAAYISQHDVHIG 60
LLGP GKTTLL LAG + D SG + +G + P R + Q
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD-----SGSIMLDGEDVTNVPPHLRHINMVFQSYALFP 55
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
MTV E +AF + + V E+ R EA
Sbjct: 56 HMTVEENVAFGLKMRKVPR-----AEIKPRVLEA-------------------------- 84
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSST 179
L + D +SGGQ++RV +V P + L +DE + LD
Sbjct: 85 --------LRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKI-LLLDEPLSALDKKL 135
Query: 180 TFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVLDFFE 238
Q+ ++ L G + + E + D I ++ +I G P E+
Sbjct: 136 RDQMQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI------ 188
Query: 239 SMGFKCPERKGVADFLQEV 257
++ P VA F+ E+
Sbjct: 189 ---YEEPANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 1e-06
Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 21/193 (10%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYPKKQ---ETFTRISGYC 768
G AL+G SGAGKT+L++ L G ++ G++ I+G ++ E++ + +
Sbjct: 374 PAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 769 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE- 827
QN P T+ +++L ++ + ++ E + L L Q L G+
Sbjct: 429 GQNP-QLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPL-----LPQGLDTPIGDQ 482
Query: 828 -SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 886
+GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+ + N +T +
Sbjct: 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL-NAASRRQTTLMVT 541
Query: 887 HQPSIDIFESFDE 899
HQ ++ +D+
Sbjct: 542 HQ--LEDLAQWDQ 552
|
Length = 588 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 145 ISGGQKKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLL 203
+SGGQK+RV G + V P + + +DE ++ LD + QI+ IR+ + N VIS+
Sbjct: 144 LSGGQKQRVAIAGILAVEPKI-IILDESTSMLDPAGKEQILKLIRK-LKKKNNLTVISIT 201
Query: 204 QPAPETYDLFDDIILLSDAQIVYQG-PREL 232
E ++ D +++L D +++ QG P E+
Sbjct: 202 HDIDEA-NMADQVLVLDDGKLLAQGSPVEI 230
|
Length = 282 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 1e-06
Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 37/213 (17%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YPKKQ 758
E++L+ LN +S F + ++G SG+GK+TL+ G Y G I + Y +
Sbjct: 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDK 93
Query: 759 ETFTRISGYCEQNDIHS--------PFV-----------TVYESLLYSAWLRLPPEVDSE 799
+ + I + V T+ + +++ + +++
Sbjct: 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK 153
Query: 800 TQKMFIEEIMEL----VELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 855
F M L +E +P GLS Q++R+ IA L P I+ DE
Sbjct: 154 KLAKFYLNKMGLDDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFDE 202
Query: 856 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 888
PT+GLD + +M+ + + +TV H
Sbjct: 203 PTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
|
Length = 320 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 32/162 (19%)
Query: 718 LTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG---YPKKQETFT--RISGYCE 769
+TAL+G SG GK+T + L + I G + + G Y K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 770 QNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV--------EL-NPLRQ 819
Q +PF +++Y+++ Y P + K +++I+E E+ + L++
Sbjct: 92 QKP--NPFPMSIYDNVAYG------PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
S + L G Q++RL IA + P +I MDEPTS LD
Sbjct: 144 SALKLSGG------QQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 1e-06
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
LS +R+ + IA L N ++ +DEPT+ L + + +R G V+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 709 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYITGNITISG---YPKKQETF 761
V+ P +TA +G SG GK+T++ L R G + G + + G Y +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 762 T--RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL-NPLR 818
R G Q P +++ ++++ A L+L + + +E+ + L N ++
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLWNEVK 139
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
L PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 140 DRL-DKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 26/194 (13%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNITISGYPKKQET 760
+LN +S + R G A+ G SG GK+TL+ ++A T G + G +S K E
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGE-DVSTL--KPEA 74
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
+ + YC Q TV ++L++ +R + + +++ L P
Sbjct: 75 YRQQVSYCAQTPALFG-DTVEDNLIFPWQIR-----NRRPDRAAALDLLARFAL-PDSI- 126
Query: 821 LVGLPGE-SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA----AIVMRTVRNT 875
L + LS +++R+ + L P I+ +DE TS LD ++ R VR
Sbjct: 127 ---LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR-- 181
Query: 876 VDTGRTVVCTIHQP 889
+ V+ H
Sbjct: 182 -EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 56/232 (24%), Positives = 90/232 (38%), Gaps = 51/232 (21%)
Query: 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 736
S+ F+ V Y M+ +G L+ +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQHF 53
Query: 737 AGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEV 796
+G ITI+GY T +G + V++
Sbjct: 54 NALLKPS--SGTITIAGY-----HITPETGNKNLKKLRKKVSLVFQF------------- 93
Query: 797 DSETQKMFIEEIMELVELNPLR----------QSL-----VGLPGESG------LSTEQR 835
E Q +F +++ VE P ++L VGL + LS Q
Sbjct: 94 -PEAQ-LFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQM 151
Query: 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
+R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H
Sbjct: 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTH 203
|
Length = 287 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-06
Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 53/239 (22%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVHIG 60
++G SGK+TLL L G G V +G + + P +R Y+ Q D +
Sbjct: 496 IIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQ-DPRLF 551
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
T+R+ +A A P D + ++AA G +T
Sbjct: 552 YGTLRDNIALGA-------------------------PYADDEEILRAAELAG-----VT 581
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSST 179
++ V D +G E R +SGGQ++ V ++ P + L +DE ++ +D+ +
Sbjct: 582 EF---VRRHPDGLDMQIG-ERGRSLSGGQRQAVALARALLRDPPI-LLLDEPTSAMDNRS 636
Query: 180 TFQIVNSIRQNIH---ILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
+ + +++ + ++ T SLL DL D II++ + +IV GP++ VL+
Sbjct: 637 EERFKDRLKRWLAGKTLVLVTHRTSLL-------DLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 55/225 (24%), Positives = 89/225 (39%), Gaps = 48/225 (21%)
Query: 4 LLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIG 60
LLGP GKTT L +AG + S GR+ G + + P R A + Q+
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTS-----GRIYIGGRDVTDLPPKDRDIAMVFQNYALYP 85
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
MTV + +AF + + V P +ID ++ A
Sbjct: 86 HMTVYDNIAFGLKLRKV--------------------PKDEIDERVREVA---------- 115
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
++L +E + D + +SGGQ++RV G +V MDE + LD+
Sbjct: 116 ----ELLQIEH-----LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLR 166
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIV 225
Q+ ++ + GT I + E + D I +++D QI
Sbjct: 167 VQMRAELK-RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 2e-06
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 746
L+GVS + R G + AL+G +GAGK+TLM +L+G + G I
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 29/183 (15%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L+ VS R G + +L G +GAGK+TLM VL+G G G I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 766 GYCEQND---IHS-----PFVTVYESL-LYSAWLRLP----PEVDSETQKMFIEEIMELV 812
E+ IH ++V E++ L + + QK+ ++ +
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLL-AQLK--L 133
Query: 813 ELNPLRQSLVGLP-GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
++NP P G GL +Q + IA L ++ +DEPT+ L A+++
Sbjct: 134 DINP------ATPVGNLGLGQQQ--LVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185
Query: 872 VRN 874
+R+
Sbjct: 186 IRD 188
|
Length = 506 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 48/201 (23%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETF 761
L ++ G L A++G G+GK++L+ L G K G ++ +I+
Sbjct: 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA--------- 69
Query: 762 TRISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-L 817
Y Q P++ T+ E++L+ D E E++++ L P L
Sbjct: 70 -----YVSQ----EPWIQNGTIRENILFGK------PFDEE----RYEKVIKACALEPDL 110
Query: 818 RQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAI 867
LP GE G LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 111 EI----LPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHI 166
Query: 868 VMRTVRNTVDTGRTVVCTIHQ 888
+ + +T + HQ
Sbjct: 167 FENCILGLLLNNKTRILVTHQ 187
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 59/249 (23%), Positives = 95/249 (38%), Gaps = 103/249 (41%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+ ++GP SGK++LL AL G+L+ K SG V+ G + AY+SQ
Sbjct: 33 LVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG----------SIAYVSQ------ 73
Query: 61 E-----MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKP---DPDIDVYMKAAATE 112
E T+RE + F G +D R ++ IK +PD+++
Sbjct: 74 EPWIQNGTIRENILF-------GKPFDE-----ERYEKV-IKACALEPDLEI-------- 112
Query: 113 GQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGI--SGGQKKRVTTGEMMVGPALA----- 165
L D T +G+ +GI SGGQK+R+ +LA
Sbjct: 113 ----------------LPDGDLTEIGE---KGINLSGGQKQRI---------SLARAVYS 144
Query: 166 ----LFMDEISTGLDSSTTFQIVNS-IRQNIHILNGTAVI------SLLQPAPETYDLFD 214
+D+ + +D+ I + I +LN I LL A D
Sbjct: 145 DADIYLLDDPLSAVDAHVGRHIFENCILG--LLLNNKTRILVTHQLQLLPHA-------D 195
Query: 215 DIILLSDAQ 223
I++L + +
Sbjct: 196 QIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 32/211 (15%)
Query: 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 738
FD+V++S D QG+ VS +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGV--------EDVSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 739 RKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLY----SAWLRL-- 792
++ +G I I G T I + + V ++ L+ +R+
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 793 PPEVDSETQKMF-IEEIMELVELNPLR-QSLVGLPGESGLSTEQRKRLTIAVELVANPSI 850
P D E + + + +E P ++VG G LS +R+RL IA L+ +P I
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQ-LSGGERQRLAIARALLKDPPI 492
Query: 851 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
+ +DE TS LD A V + + + GRT
Sbjct: 493 LILDEATSALDVETEAKVKAAL-DELMKGRT 522
|
Length = 588 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 26/204 (12%)
Query: 693 MKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 752
M+L + E + +SG R G + L+G +GAGK+TL+ +AG +G +G+I +
Sbjct: 4 MQLNDVAESTRLG--PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFA 58
Query: 753 GYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIM 809
G P + R Y Q +P W L +T+ + ++
Sbjct: 59 GQPLEAWSATELARHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVA 110
Query: 810 ELVEL-NPLRQSLVGLPGESGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDAR 863
+ L + L +S L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 111 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVA 166
Query: 864 AAAIVMRTVRNTVDTGRTVVCTIH 887
+ + R + G +V + H
Sbjct: 167 QQSALDRLLSALCQQGLAIVMSSH 190
|
Length = 248 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 30/208 (14%)
Query: 693 MKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 752
M+L + L +S R G + L+G +GAGK+TL+ +AG G +G+I +
Sbjct: 1 MQLNDVAVSTR--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFA 55
Query: 753 G-----YPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEE 807
G + R Y Q + V++ L L P + +E + E
Sbjct: 56 GQPLEAWS--AAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNE 109
Query: 808 IMELVELNP-LRQSLVGLPGESGLSTE-QRKRLTIAVEL----VANPS--IIFMDEPTSG 859
+ E + L+ L +S+ L G E QR RL AV L NP+ ++ +DEP +
Sbjct: 110 VAEALGLDDKLGRSVNQLSG-----GEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNS 163
Query: 860 LDARAAAIVMRTVRNTVDTGRTVVCTIH 887
LD A + R + G VV + H
Sbjct: 164 LDVAQQAALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 52/181 (28%), Positives = 76/181 (41%), Gaps = 36/181 (19%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIT-GNITISGYPKK 757
L+ +S F +TAL+G SG GK+T + D++ G + G I I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 758 QETFTRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
R G Q +PF +++E++ Y LR V+ K ++ E +E
Sbjct: 82 VVELRRRVGMVFQKP--NPFPKSIFENVAYG--LR----VNGVKDKAYLAERVE------ 127
Query: 817 LRQSLVGLP---------GES--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 865
+SL ES GLS Q++RL IA L P ++ MDEP S LD A
Sbjct: 128 --RSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT 185
Query: 866 A 866
Sbjct: 186 Q 186
|
Length = 253 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (121), Expect = 2e-06
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 13/189 (6%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGNITISGYPK 756
+L+ VS F +T+LMG +G+GKTT + D ++G R +G + G +I Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
E F R G Q P + L +L P E + + + E+ +
Sbjct: 96 VLE-FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLWDA 152
Query: 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSPFR--LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 877 DTGRTVVCT 885
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 13/162 (8%)
Query: 709 VSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGNITISG---YPKKQE--T 760
VS F +TA++G SG GK+T+ ++ + +TG I + Y + + +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL-NPLRQ 819
R G Q P +++Y++++ A +L V+ +E ++ V L + ++
Sbjct: 83 IRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
L E LS Q++RL IA + P +I MDEP S LD
Sbjct: 141 RLKSNAME--LSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 22/160 (13%)
Query: 718 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGY----PKKQETFTRIS- 765
+TA++G SG GKTTL+ D + G + + G I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL-NPLRQSLVGL 824
G Q P +++Y+++ + R+ +EE ++ L + ++ L
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL-NK 142
Query: 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 864
PG LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 143 PGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 61/198 (30%), Positives = 86/198 (43%), Gaps = 40/198 (20%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L VS + G A++G +G+GK+TL +L G G IT+ G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 764 IS---GYCEQNDIHSP---FV--TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
+ G QN P FV TV + + + E + EE++E V+
Sbjct: 79 VRRQVGMVFQN----PDNQFVGATVQDDVAFGL----------ENIGVPREEMVERVD-Q 123
Query: 816 PLRQSLVGL-------PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
LRQ VG+ P LS Q++R+ IA L P II +DE TS LD R V
Sbjct: 124 ALRQ--VGMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV 179
Query: 869 MRTVRNTVDTGRTVVCTI 886
+ TVR + V +I
Sbjct: 180 LETVRQLKEQKGITVLSI 197
|
Length = 279 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 48.5 bits (117), Expect = 3e-06
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGM---DEFVPQRTAAYISQHDVHIG 60
LLGP +GKTTL+ + G L SG + G + E V +R Y+ +
Sbjct: 31 LLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKRRIG-YLPEEPSLYE 86
Query: 61 EMTVRETLAFS 71
+TVRE L S
Sbjct: 87 NLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 3e-06
Identities = 56/248 (22%), Positives = 86/248 (34%), Gaps = 69/248 (27%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA----AYISQHDV 57
LLG +GKTTLL + G L + SG + ++G + P A Y+ +
Sbjct: 29 VALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRR 85
Query: 58 HIGEMTVRETLAFSARCQGVGSR-------YDMLTELARREKEAGIKPDPDIDVYMKAAA 110
E+TV E L A + R Y++ L R K
Sbjct: 86 IFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRK------------------ 127
Query: 111 TEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE-MMVGPALALFMD 169
Q A L SGG+++ + +M P L L +D
Sbjct: 128 ---QLAGTL--------------------------SGGEQQMLAIARALMSRPKL-LLLD 157
Query: 170 EISTGLDSSTTFQIVNSIRQNIHILN--GTAVISLLQPAPETYDLFDDIILLSDAQIVYQ 227
E S GL IV I + I L G ++ + Q A ++ D +L ++V +
Sbjct: 158 EPSEGLAPK----IVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLE 213
Query: 228 GPRELVLD 235
G +L
Sbjct: 214 GTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-06
Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 32/199 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L G++ PG + AL+G SG+GK+T+ +L + TGG + + G P Q
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ----- 547
Query: 764 ISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
+ + +H V E +L+S +R + EEIM + ++
Sbjct: 548 ----YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 823 GLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
P GE G LS Q++R+ IA LV P ++ +DE TS LDA + ++
Sbjct: 602 EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQLLQ 657
Query: 874 NTVDT-GRTVVCTIHQPSI 891
+ RTV+ H+ S
Sbjct: 658 ESRSRASRTVLLIAHRLST 676
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-06
Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 18/184 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---TG----NITISGYPK 756
++ VS + G + ++G SGAGKTTL ++AG T G + G ++T G P
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG-PD 358
Query: 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
+ R G Q P TV ++L + L LP E+ K I M +
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEK 416
Query: 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
+ L P E LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 417 AEEILDKYPDE--LSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSI 470
Query: 877 DTGR 880
R
Sbjct: 471 LKAR 474
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 12/187 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISGYPKKQETFT 762
L+ + G + ++G SG+GK+TL+ + L +G I + ++ PK E
Sbjct: 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVDERLI 75
Query: 763 RI-SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R +G Q P +T E++++ P V +++ ++ EL+ L +
Sbjct: 76 RQEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEAEKQARELLAKVGLAERA 130
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
P E LS Q++R+ IA L P ++ DEPTS LD V++ +++ + G T
Sbjct: 131 HHYPSE--LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMT 188
Query: 882 VVCTIHQ 888
+V H+
Sbjct: 189 MVIVTHE 195
|
Length = 240 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 809 MELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
+E VE++ R + LP + S ++RL IA LV +P ++FMDEPT GLD A +
Sbjct: 135 LERVEIDAAR--IDDLP--TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 869 MRTVRNTV-DTGRTVVCTIH 887
+ +R V + G VV H
Sbjct: 191 LDLLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 56/243 (23%), Positives = 89/243 (36%), Gaps = 65/243 (26%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAA------YISQHDV 57
+LG SGK+TLL + G L G + +G + + + + Q
Sbjct: 39 ILGGSGSGKSTLLRLILGLL---RPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+TV E +AF R T+L ++ V MK
Sbjct: 96 LFSSLTVFENVAFPLR---------EHTKLPESLIR-------EL-VLMK---------- 128
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA---------LFM 168
L+++GL D +SGG +KRV ALA LF+
Sbjct: 129 ------LELVGL----RGAAADLYPSELSGGMRKRV---------ALARAIALDPELLFL 169
Query: 169 DEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
DE ++GLD + I IR+ L T VI + + D + +L+D +++ +G
Sbjct: 170 DEPTSGLDPISAGVIDELIRELNDALGLT-VIMVTHDLDSLLTIADRVAVLADGKVIAEG 228
Query: 229 PRE 231
E
Sbjct: 229 TPE 231
|
Length = 263 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 14/176 (7%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGNITISGYPKKQET 760
L+ ++ + + G + AL+G SG+GK+ ++ +L T +G I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 761 F-TRISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL 817
R QN + P T+ + + + I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL---ILEALEAVGLPDP 115
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
+ L P + LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYPFQ--LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-06
Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 29/153 (18%)
Query: 719 TALMGVSGAGKTTLMDVLAG--RKTGGYITGN--------ITISGYPKKQETFTRISGYC 768
TA+ G SGAGKT+L++ ++G R G I N I P+K+ RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 769 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828
Q+ P V +L Y + F ++I+ L+ + PL L P
Sbjct: 82 FQDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYP--G 127
Query: 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-06
Identities = 52/173 (30%), Positives = 73/173 (42%), Gaps = 24/173 (13%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 758
D L ++G+S R G L+G SG+GK+TL L G I G +K+
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKE 357
Query: 759 ETFTRISGYCEQNDIHSPFVTVYESL--------LYSAWLRL--PPEVDSETQKMFIEEI 808
R + F Y SL + LR+ P +E + IE +
Sbjct: 358 MRPLR-------RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 809 MELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
E V L+P + P E S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 411 EE-VGLDP--ATRNRYPHE--FSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 5e-06
Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 59/236 (25%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE------FVPQRTAAYISQH 55
++GP +GK+TLL A+ G L SG + G +++ +VPQR +
Sbjct: 28 LAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGYVPQRRSI---DR 81
Query: 56 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQE 115
D I +VR+ + G+ + L++ +K E
Sbjct: 82 DFPI---SVRDVVLM-----GLYGHKGLFRRLSKADKAKV------------------DE 115
Query: 116 ANVLTDYYLKVLGL-EVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTG 174
A L+ +GL E+ D + E+ SGGQ++RV +V L +DE G
Sbjct: 116 A-------LERVGLSELADRQI--GEL----SGGQQQRVLLARALVQDPDLLLLDEPFAG 162
Query: 175 LDSSTTFQIVNSIRQNIHILNGTAVISL--LQPAPETYDLFDDIILLSDAQIVYQG 228
+D T I +R+ + T ++ L + FD ++LL + +V G
Sbjct: 163 VDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVL---EYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 47/193 (24%), Positives = 72/193 (37%), Gaps = 48/193 (24%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE-----FVPQRTAAYISQH- 55
LLG +GK+TLLL L G L + SG V +G +D ++ + Q
Sbjct: 21 LALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP 77
Query: 56 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQE 115
D + V + +AF G+ E+ RR +EA
Sbjct: 78 DDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA--------------------- 111
Query: 116 ANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGL 175
LT + GL + +SGG+KKRV + L +DE + GL
Sbjct: 112 ---LT--AVGASGLR--------ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158
Query: 176 DSSTTFQIVNSIR 188
D + Q++ +R
Sbjct: 159 DPAGREQMLAILR 171
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-06
Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETF 761
+LN +S G + AL+G SG+GKTTL+ ++AG +T G+I + T +S +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R G+ Q+ +TV++++ + L + P + ++ +L+E+ L
Sbjct: 74 -RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 17/152 (11%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTR--ISGYCEQN 771
G A++G SGAGK+TL++++AG T +G++T++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 772 DIHSPFVTVYE--SLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829
++ +TV + L + L+L + Q+ + I + + L L LPG+
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKL-----NAAQREKLHAIARQMGIEDL---LARLPGQ-- 129
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 5e-06
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 26/171 (15%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISGYPKKQ 758
+ LN VS G + ++G SGAGK+TL+ ++L +G I ++ +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 759 ETFTRIS-GYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
T R G Q N + S TV+ ++ LP E+D+ + ++ EL+
Sbjct: 77 LTKARRQIGMIFQHFNLLSSR--TVFGNV------ALPLELDNTPKDEIKRKVTELL--- 125
Query: 816 PLRQSLVGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
+LVGL + S LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 126 ----ALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 6e-06
Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 36/225 (16%)
Query: 677 SLTFDEVTYSVD--MPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 734
++ FD V+Y+ P E + ++ V+ F G A++G +G+GK+TL+
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQA----------IHDVNTEFEQGKYYAIVGQTGSGKSTLIQ 51
Query: 735 VLAG--RKTGGYIT-GNITISGYPKKQETFTRISGYCEQNDIHSPFVTVY---ESLLYSA 788
+ + T G +T +ITI+ K ++ + R + V+ ES L+
Sbjct: 52 NINALLKPTTGTVTVDDITITH--KTKDKYIR--------PVRKRIGMVFQFPESQLFED 101
Query: 789 WLRLPPEVDSETQKMFIEEIME-----LVELNPLRQSLVGLPGESGLSTEQRKRLTIAVE 843
+ + KM ++E+ L++L R + P + +S Q +++ I
Sbjct: 102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQ--MSGGQMRKIAIVSI 159
Query: 844 LVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIH 887
L NP II +DEPT+GLD ++ VMR +++ D +T++ H
Sbjct: 160 LAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSH 204
|
Length = 286 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 6e-06
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 36/159 (22%)
Query: 718 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHS-- 775
LT L+G SG GKTT++ ++AG +T +G I + G + T + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 776 ------PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829
P +TV+E++ + LR+ QK EI V + LR +V L +
Sbjct: 93 QSYALFPHMTVFENVAFG--LRM--------QKTPAAEITPRV-MEALR--MVQLEEFAQ 139
Query: 830 -----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 140 RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 6e-06
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 17/175 (9%)
Query: 715 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIH 774
G + G +GAGKTTL+ VLAG +G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 775 SPFVTVYESLLYSAWL--RLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832
++ E+L + L R ++ + +V L +LV LS
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGSA--------LAIVGLAGYEDTLV-----RQLSA 140
Query: 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 141 GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 7e-06
Identities = 61/269 (22%), Positives = 91/269 (33%), Gaps = 104/269 (38%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA---AYISQHDV 57
+ +LGP +GK+TLL AL+G+L SG V NG + ++ P A A + QH
Sbjct: 30 VVAILGPNGAGKSTLLRALSGELSP---DSGEVRLNGRPLADWSPAELARRRAVLPQH-- 84
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAA--ATEGQE 115
+L+F + V V M A E
Sbjct: 85 --------SSLSFPFTVEEV--------------------------VAMGRAPHGLSRAE 110
Query: 116 ANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA---------- 165
+ L L + L + +SGG+++RV LA
Sbjct: 111 DDALVAAALAQVDL-----AHLAGRDYPQLSGGEQQRV---------QLARVLAQLWEPD 156
Query: 166 -----LFMDEISTGLDSSTTFQIVNSIRQNIHIL---------NGTAVISLLQPAPETYD 211
L +DE ++ LD + H+L G AVI +L +D
Sbjct: 157 GPPRWLLLDEPTSALD----------LAHQHHVLRLARQLAHERGLAVIVVL------HD 200
Query: 212 L------FDDIILLSDAQIVYQGPRELVL 234
L D I+LL ++V G VL
Sbjct: 201 LNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 7e-06
Identities = 76/314 (24%), Positives = 113/314 (35%), Gaps = 83/314 (26%)
Query: 4 LLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIG 60
LLGP GKTT+L +AG D SGR+ +G + R + Q
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPD-----SGRIMLDGQDITHVPAENRHVNTVFQSYALFP 99
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
MTV E +AF R Q + E+ R EA
Sbjct: 100 HMTVFENVAFGLRMQKTPAA-----EITPRVMEA-------------------------- 128
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
L+++ LE +SGGQ++RV +V L +DE + LD
Sbjct: 129 ---LRMVQLEE-----FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR 180
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYD------LFDDIILLSDAQIVYQG-PRELV 233
Q+ N ++ L T V T+D + D I+++ D +I G PRE+
Sbjct: 181 KQMQNELKALQRKLGITFVFV-------THDQEEALTMSDRIVVMRDGRIEQDGTPREI- 232
Query: 234 LDFFESMGFKCPERKGVADFLQE-------VTSRKDQQQYWVHKEMPYRFVTAQEFSEAF 286
++ P+ VA F+ E V R D+Q+ + E +
Sbjct: 233 --------YEEPKNLFVARFIGEINIFDATVIERLDEQRVRANVEGRECNIYVN------ 278
Query: 287 QSFTVGQKLADELR 300
+ GQKL LR
Sbjct: 279 FAVEPGQKLHVLLR 292
|
Length = 375 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 888
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 7e-06
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 9/174 (5%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF--TR 763
L+G+ RPG L G +GAGK+TLM +L+G G G I SG P K T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 764 ISGYC--EQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQS 820
+G Q P ++V E++ + LP + + + ++ ++L+ +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
G+ G +Q + IA L ++ +DEP+S L + I++ +R+
Sbjct: 137 RP--VGDYGGGQQQ--LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 27/203 (13%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISG---YPKK 757
++ GV + ALMG SG GK+TL+ + L + G + + G Y
Sbjct: 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77
Query: 758 QETFT--RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL- 814
+ R G Q P +T+Y+++ + ++L V S+ +E+ E VE
Sbjct: 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNV--AIGVKLNGLVKSK------KELDERVEWA 129
Query: 815 -------NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 867
+ ++ L P LS QR+RL IA L P I+ MDEPT+ +D A
Sbjct: 130 LKKAALWDEVKDRLNDYPSN--LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAK 187
Query: 868 VMRTVRNTVDTGRTVVCTIHQPS 890
+ + + T+V H P+
Sbjct: 188 IEELLFE-LKKEYTIVLVTHSPA 209
|
Length = 253 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 8e-06
Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 38/193 (19%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI-TISGYPKKQETFTRISGYCEQND 772
RPG + ++G +G GK+T + +LAG + N+ P E R G QN
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGE-----LKPNLGRYEDPPSWDEVIKRFRGTELQN- 151
Query: 773 IHSPFVTVYESLLYSAWLR----------LPPEVDSETQKM--------FIEEIMELVEL 814
Y LY LR +P V + ++ +E++E + L
Sbjct: 152 --------YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGL 203
Query: 815 NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
+ V S LS + +R+ IA L+ + + F DEP+S LD R R +R
Sbjct: 204 ENVLDRDV-----SELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRE 258
Query: 875 TVDTGRTVVCTIH 887
+ G+ V+ H
Sbjct: 259 LAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 8e-06
Identities = 53/208 (25%), Positives = 82/208 (39%), Gaps = 34/208 (16%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGR---KTGGYITGNITI 751
+L +L VS G AL G SGAGK+TL+ L +GR + G
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 752 SG----YPKKQETFTRISGYCEQNDIHSPFVT----VYESLLYSAWLRLPPEVDSETQKM 803
S +++ GY Q P V+ V E LL P E +
Sbjct: 80 SPREVLEVRRKTI-----GYVSQFLRVIPRVSALEVVAEPLLERGV---PREAARARARE 131
Query: 804 FIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
L LN + + L LP + S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 132 L------LARLN-IPERLWHLP-PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183
Query: 864 AAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
+V+ + G ++ H +
Sbjct: 184 NRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 9e-06
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 24/167 (14%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L+ +S PG AL+G SG+GK+TL++++ + +G I + G+ T +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 766 GYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
D+ T+ ++ Y + D EI + + +
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGR----TEQADRA-------EIERALAAAYAQDFVDK 454
Query: 824 LP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
LP GE+G LS QR+RL IA L+ + I+ +DE TS LD
Sbjct: 455 LPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALD 501
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 58/247 (23%), Positives = 92/247 (37%), Gaps = 63/247 (25%)
Query: 2 TLLLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGH---GMDEFVPQ--RTAAYISQ 54
T L+GP GK+TLL L L G V +G +D V + R + Q
Sbjct: 29 TALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQ 88
Query: 55 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQ 114
++ + +A+ R G+ + EL R +EA
Sbjct: 89 KPNPF-PGSIYDNVAYGLRLHGIKLK----EELDERVEEA-------------------- 123
Query: 115 EANVLTDYYLKVLGL--EVCDDTLVGDEMVRGISGGQKKRVTTGE-MMVGPALALFMDEI 171
L+ L EV D G+SGGQ++R+ + P + L +DE
Sbjct: 124 ---------LRKAALWDEVKDRL-----HALGLSGGQQQRLCLARALANEPEV-LLLDEP 168
Query: 172 STGLDSSTTFQIVNSIRQNIHILNG--TAVI---SLLQPAPETYDLFDDIILLSDAQIVY 226
++ LD +T +I I + L T VI ++ Q A + D L + ++V
Sbjct: 169 TSALDPISTAKIEELIAE----LKKEYTIVIVTHNMQQAA----RVADRTAFLLNGRLVE 220
Query: 227 QGPRELV 233
GP E +
Sbjct: 221 FGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 46/197 (23%), Positives = 68/197 (34%), Gaps = 50/197 (25%)
Query: 6 GPPCSGKTTLLLALAGKLDSKLKFSGRVTYNG--HGMDEFVPQRTAAYISQHDVHIGEMT 63
GP GKTTLL LAG L SG V +NG P R Y+ E++
Sbjct: 33 GPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
E L F A G G++ + LA
Sbjct: 90 ALENLHFWAAIHG-GAQRTIEDALAA---------------------------------- 114
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 183
+ + G E D +S GQ++R+ + + A +DE +T LD + +
Sbjct: 115 VGLTGFE--------DLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL 166
Query: 184 VNSIRQNIHILNGTAVI 200
+R H+ G V+
Sbjct: 167 AGLLRA--HLARGGIVL 181
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 56/230 (24%), Positives = 90/230 (39%), Gaps = 51/230 (22%)
Query: 3 LLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH---GMDEFVPQ---RTAAYISQHD 56
+L GP SGKTTLL L G L S G + G G E R YI Q
Sbjct: 35 ILTGPSGSGKTTLL-TLIGGLRSVQ--EGSLKVLGQELYGASEKELVQLRRNIGYIFQAH 91
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
+G +T R+ + + ++ L+ +E +A A
Sbjct: 92 NLLGFLTARQNVQMAL---------ELQPNLSYQEARE------------RARA------ 124
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGL 175
L+ +GL D L D +SGGQK+RV +V P L + DE + L
Sbjct: 125 ------MLEAVGLG---DHL--DYYPHNLSGGQKQRVAIARALVHRPKL-VLADEPTAAL 172
Query: 176 DSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIV 225
DS + +V +++ G ++ ++ D+ D I+ + D +++
Sbjct: 173 DSKSGRDVVELMQKLAR-EQGCTIL-IVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 52/214 (24%)
Query: 683 VTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 742
V Y+ D+P +L VS + G ++G +GAGK+TL +LA +
Sbjct: 14 VRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 743 GYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESL--------LYSAWLRLPP 794
G I I G + P + SL L+S +R
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 795 EVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 854
+ E EEI + ++ G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSD---EEIYGALRVSE---------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 855 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 888
E T+ +D A++ +T+R T T++ H+
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHR 183
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 13/161 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQ--ET 760
+N VS R G + +MG+SG+GK+TL+ + T G + I+ +K+ E
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
+ Q+ P TV E++ + ++ V ++ E +ELV L
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHK 156
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
P E LS ++R+ +A L +P I+ MDE S LD
Sbjct: 157 Y---PDE--LSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 888
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 21/182 (11%)
Query: 720 ALMGVSGAGKTTLMDVL--------AGRKTGG---YITGNI-TISGYPKKQETFTRISGY 767
+MG SG+GK+TL+ VL + K G Y +I I ++E G
Sbjct: 40 GIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV-----GM 94
Query: 768 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827
Q P +++Y+++ Y L+ + K +EE + V L + P
Sbjct: 95 VFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPA- 151
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
S LS Q++RLTIA L P ++ MDEPTS +D + + + + + +V H
Sbjct: 152 SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKNEIAIVIVSH 210
Query: 888 QP 889
P
Sbjct: 211 NP 212
|
Length = 257 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 36/210 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L+ V+ RP + ALMG +GAGK+TL+ L G +K +G+I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 764 ISGYCEQNDI---HSPFVTVYE-SLLYSAWL-RLPPE---VD-----SETQKMFIEEIME 810
S +N I H V + S++ + WL R P + VD +T+ +F E
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIF----DE 121
Query: 811 L-VELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
L ++++P R + + LS Q + + IA N I+ MDEPTS L + +
Sbjct: 122 LDIDIDP-RAKV------ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLF 174
Query: 870 RTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899
+R + G +V H+ +IF+ DE
Sbjct: 175 TIIRKLKERGCGIVYISHKME-EIFQLCDE 203
|
Length = 491 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 32/174 (18%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGNITISGYPKKQETFT 762
L ++ + +TA++G SG GK+T ++++ +TG + +G +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 763 RIS-----GYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIME--LVEL 814
+ G Q +PF ++++++ Y P + K ++EI+E L ++
Sbjct: 88 LVELRKNIGMVFQKG--NPFPQSIFDNVAYG------PRIHGTKNKKKLQEIVEKSLKDV 139
Query: 815 -------NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
+ L + L G Q++RL IA L NP ++ MDEPTS LD
Sbjct: 140 ALWDEVKDRLHTQALSLSGG------QQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 40/185 (21%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 755
L +S +TA +G SG GK+TL+ D++ + I G I + G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 756 KKQE--TFTRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV 812
KK + R G Q +PF ++YE+++Y LRL + ++E +E
Sbjct: 97 KKVDVAELRRRVGMVFQRP--NPFPKSIYENVVYG--LRLQGINNRRV----LDEAVE-- 146
Query: 813 ELNPLRQSLVGLPGE---------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
LR + L E GLS Q++RL IA + P ++ +DEPTS LD
Sbjct: 147 --RSLRGA--ALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPI 202
Query: 864 AAAIV 868
+ +
Sbjct: 203 STLKI 207
|
Length = 272 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 21/196 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+L G++ + G + A+MG +G+GK+TL V+AG + G+I G
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 765 S------GYCEQNDIHSPFVT-------VYESLLYSAWLRLPPEVDSETQKMFIEEIMEL 811
+ + Q I P V+ Y S L PE+D I E ++L
Sbjct: 82 AHLGIFLAF--QYPIEIPGVSNADFLRLAYNSKRKFQGL---PELDPLEFLEIINEKLKL 136
Query: 812 VELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
V ++P S + G S ++KR I + + + +DE SGLD A I+
Sbjct: 137 VGMDP---SFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEG 193
Query: 872 VRNTVDTGRTVVCTIH 887
+ + + +++ H
Sbjct: 194 INKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 54/242 (22%), Positives = 81/242 (33%), Gaps = 67/242 (27%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGM----DE------FVPQRTAAYIS 53
LGP +GKTT + L L SG G+ + + VPQ +
Sbjct: 24 FLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDE- 79
Query: 54 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEG 113
++T RE L R G L + E E +
Sbjct: 80 -------DLTGRENLEMMGRLYG----------LPKDEAEERAEE--------------- 107
Query: 114 QEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEIST 173
L++ L D V SGG ++R+ ++ LF+DE +T
Sbjct: 108 ---------LLELFEL-----GEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153
Query: 174 GLDSSTTFQIVNSIRQNIHILN--GTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PR 230
GLD T +I I L G ++ E L D I ++ +I+ +G P
Sbjct: 154 GLDPRTR----RAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPE 209
Query: 231 EL 232
EL
Sbjct: 210 EL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 58/241 (24%), Positives = 94/241 (39%), Gaps = 49/241 (20%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH------GMDEFVPQRTAAYISQ 54
M ++GP +GK+TLL +L G +D SG + +NG G + +R I Q
Sbjct: 32 MVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQ 88
Query: 55 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQ 114
+ ++V E + G S + L L +E +A +D +
Sbjct: 89 QFNLVPRLSVLENVLLGRL--GYTSTWRSLFGLFSKEDKAQA-----LDAL--------E 133
Query: 115 EANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTG 174
+L Y + TL SGGQ++RV +V + DE
Sbjct: 134 RVGILDKAYQRA-------STL---------SGGQQQRVAIARALVQQPKIILADEPVAS 177
Query: 175 LDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL----FDDIILLSDAQIVYQGPR 230
LD + ++++ ++ I+ +G VI L DL D II L +IV+ GP
Sbjct: 178 LDPESAKKVMDILKD-INQEDGITVIVNLH----QVDLAKKYADRIIGLKAGRIVFDGPA 232
Query: 231 E 231
Sbjct: 233 S 233
|
Length = 258 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 40/171 (23%), Positives = 63/171 (36%), Gaps = 52/171 (30%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
L+GP GK+TLL +AG L+ SG V +G + P Y+ Q D + +T
Sbjct: 35 LVGPSGCGKSTLLRIIAG-LER--PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLT 89
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
V + +A QGV + E +A
Sbjct: 90 VLDNVALGLELQGV----------PKAEARE------------RAEE------------L 115
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRV----TTGEMMVGPALALFMDE 170
L+++GL + +SGG ++RV + V P + L +DE
Sbjct: 116 LELVGLSG-----FENAYPHQLSGGMRQRVALARA---LAVDPDV-LLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 51/226 (22%), Positives = 87/226 (38%), Gaps = 47/226 (20%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
LLGP +GKTT + + G + L SG V ++G +D + Y+ + +M
Sbjct: 31 LLGPNGAGKTTTIRMILGII---LPDSGEVLFDGKPLD-IAARNRIGYLPEERGLYPKMK 86
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
V + L + A+ +G+ ARR D +
Sbjct: 87 VIDQLVYLAQLKGLKKEE------ARRR----------------------------IDEW 112
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQ 182
L+ L L ++ V +S G +++V ++ P L L +DE +GLD
Sbjct: 113 LERLELSE-----YANKRVEELSKGNQQKVQFIAAVIHDPEL-LILDEPFSGLDPVNVEL 166
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
+ + IR+ G VI +L D ++LL+ + V G
Sbjct: 167 LKDVIRELAR--AGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 56/239 (23%), Positives = 95/239 (39%), Gaps = 48/239 (20%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ-RTAAYISQHDVHI 59
+ LLGP SGKTTLL +AG L+ G + + G + Q R ++ QH
Sbjct: 30 LVALLGPSGSGKTTLLRLIAG-LERPDS--GTILFGGEDATDVPVQERNVGFVFQHYALF 86
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVL 119
MTV + +AF R + + R EA I+ + + L
Sbjct: 87 RHMTVFDNVAFGLRVKPR----------SERPPEAEIR----------------AKVHEL 120
Query: 120 TDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 179
LK++ L+ + D +SGGQ++RV + L +DE LD+
Sbjct: 121 ----LKLVQLD-----WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171
Query: 180 TFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQI--------VYQGPR 230
++ +R+ L+ T V + E ++ D +++++ +I VY P
Sbjct: 172 RKELRRWLRRLHDELHVTTVF-VTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPA 229
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-05
Identities = 53/268 (19%), Positives = 99/268 (36%), Gaps = 48/268 (17%)
Query: 634 KTCSESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEM 693
T + T ++ ++L+ REV + P P EV V+
Sbjct: 220 GTVDPVAETTEEEL-AELMVGREVV----LRVVKP---PSTP-----GEVVLEVE----- 261
Query: 694 KLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYITGNITIS 752
L + + VS R G + + GV+G G++ L++ ++G RK +G I ++
Sbjct: 262 DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP---ASGRILLN 318
Query: 753 GYPKKQETFTRIS-----GYCEQNDIH---SPFVTVYESLLYSAWLRLPPE-----VDSE 799
G R Y ++ +++ E+L+ P +D
Sbjct: 319 GKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG-RHDKKPFSRGGFLDRR 377
Query: 800 TQKMFIEEIMELVELNPLRQSLVGLPGES----GLSTEQRKRLTIAVELVANPSIIFMDE 855
+ F E++E ++ P LS +++L +A EL P ++ +
Sbjct: 378 AIRKFARELIEEFDVRA--------PSPDAPARSLSGGNQQKLILARELARRPDLLIAAQ 429
Query: 856 PTSGLDARAAAIVMRTVRNTVDTGRTVV 883
PT GLD A + + D G+ V+
Sbjct: 430 PTRGLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 45/202 (22%), Positives = 66/202 (32%), Gaps = 52/202 (25%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP--QRTAAYISQHDVH 58
+ GP SGKTTLL LAG +GRV NG +D R Y+
Sbjct: 28 ALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGI 84
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
++V E L F S + LAR
Sbjct: 85 KTTLSVLENLRFWHA---DHSDEQVEEALAR----------------------------- 112
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
+GL D V +S GQ++RV +++ +DE +T LD +
Sbjct: 113 --------VGL-----NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159
Query: 179 TTFQIVNSIRQNIHILNGTAVI 200
+ ++ H G V+
Sbjct: 160 GVARFAEAMAG--HCARGGMVV 179
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 58/238 (24%), Positives = 92/238 (38%), Gaps = 58/238 (24%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE------FVPQRTAAYISQ 54
+T L+G GK+TL + L+G L + G V + G +D + Q+ A
Sbjct: 29 VTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQD 85
Query: 55 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQ 114
+ I + +AFS R GV E+ RR EA
Sbjct: 86 PEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRRVDEA-------------------- 120
Query: 115 EANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTG 174
L + D + ++ +S GQKKRV +V A L +DE + G
Sbjct: 121 --------------LTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAG 166
Query: 175 LDSSTTFQIVNSIR----QNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
LD + Q++ IR Q H++ + I L+ Y++ D + +L QI+ G
Sbjct: 167 LDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 47/174 (27%), Positives = 67/174 (38%), Gaps = 45/174 (25%)
Query: 3 LLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEM 62
L+ G +GKTTLL LAG L + SG++ +G R AY+ ++
Sbjct: 41 LVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADL 97
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
+ E L F G RR K+ M +A
Sbjct: 98 STLENLHFLCGLHG------------RRAKQ------------MPGSA------------ 121
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 176
L ++GL +DTLV R +S GQKKR+ + + PA +DE LD
Sbjct: 122 -LAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 758
K+ L+ VS G + L+G +GAGKTTL+ L G R T G I I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV-ELNPL 817
++ E + S +TV E+L + + + + I+ + EL L+
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF-----AERDQFQERIKWVYELFPRLHER 130
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 877
R G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 131 RIQRAGT-----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIE 181
Query: 878 TGRTVVCTI 886
R TI
Sbjct: 182 QLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 718 LTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQETFT----RISGYCEQND 772
+TAL+G SG GK+T + I G + I G K + + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 773 IHSPFV-TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL-----NPLRQSLVGLPG 826
+ FV ++YE++ Y+ L + + + ++ + + ++ V L + L+Q+ + L G
Sbjct: 90 V---FVKSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSG 145
Query: 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 146 G------QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 54/188 (28%), Positives = 79/188 (42%), Gaps = 38/188 (20%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQETFT 762
L GVS +TAL+G SG GK+T + L R I G++ + G Q+
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 763 RIS-----GYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIM------- 809
+ G Q+ +PF ++ E++ Y P + + ++
Sbjct: 121 LVELRKRVGMVFQSP--NPFPKSIRENISYG------PRKHGDINTGLLARLLGRDDKDA 172
Query: 810 --ELVELNPLRQSLVGLPGES---------GLSTEQRKRLTIAVELVANPSIIFMDEPTS 858
ELVE LRQ+ L E GLS Q++RL IA L +P +I MDEP S
Sbjct: 173 EDELVE-RSLRQA--ALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPAS 229
Query: 859 GLDARAAA 866
LD A +
Sbjct: 230 ALDPIATS 237
|
Length = 305 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 30/167 (17%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTR 763
+L G+ G + AL+G +GAGK+TLM ++AG +G + I G P R
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNP-----CAR 77
Query: 764 IS-GYCEQNDIH--------SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMEL-VE 813
++ Q I+ P ++V E++L+ LP S QKM + + L +
Sbjct: 78 LTPAKAHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASM-QKM-KQLLAALGCQ 131
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860
L+ + L R+ + I L+ + I+ +DEPT+ L
Sbjct: 132 LDLDSSA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 25/155 (16%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDI-- 773
G + L+G SG GKTT++ ++AG + G I I G E T S +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG-----EDVTHRS--IQQRDICM 82
Query: 774 --HS----PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827
S P +++ E++ Y L++ V E +K ++E +ELV+L V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
+S Q++R+ +A L+ P ++ DEP S LDA
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 58/233 (24%), Positives = 92/233 (39%), Gaps = 47/233 (20%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH--GMDEFVP--QRTAAYIS---QHD 56
++GP +GKTTLL L G+ SG VT G G E + ++ +S
Sbjct: 62 IVGPNGAGKTTLLSLLTGEH---PPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHER 118
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
+ E TVR+ + S +G + LT AAA
Sbjct: 119 FRVRE-TVRDVVL-SGFFASIGIYQEDLTAE------------------DLAAAQW---- 154
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGL 175
L++LG + D G +S G+++RV +V P L L +DE + GL
Sbjct: 155 ------LLELLGAKHLADRPFGS-----LSQGEQRRVLIARALVKDPEL-LILDEPAQGL 202
Query: 176 DSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
D Q++N + + A++ + A E F +LL + ++V QG
Sbjct: 203 DLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 3e-05
Identities = 50/253 (19%), Positives = 91/253 (35%), Gaps = 51/253 (20%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEM 62
L+G GKTTLL A+AG + + +GR+ + P +R A + Q+ +
Sbjct: 36 LIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
V + +AF R Q + ++A R +A
Sbjct: 95 KVEDNVAFGLRAQKMPK-----ADIAERVADA---------------------------- 121
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 182
LK++GL + +SGG ++R+ + L +DE + LD++
Sbjct: 122 -LKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRAN 175
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVLDFFESMG 241
+ I L ++ + + L D ++ D ++ G P+ L
Sbjct: 176 MREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL--------- 226
Query: 242 FKCPERKGVADFL 254
+ P A+FL
Sbjct: 227 YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 3e-05
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 22/162 (13%)
Query: 718 LTALMGVSGAGKTTLM-------DVLAGRKTGG--YITGNITISGYPKKQETFTRISGYC 768
+TA +G SG GK+T + D++ G G Y G T S E TRI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 769 EQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIME-LVELNPLRQSLVGLPG 826
++ +PF +++++++ Y P + + +E+I+E ++ L +
Sbjct: 170 QKP---TPFEMSIFDNVAYG------PRNNGINDRKILEKIVEKSLKSAALWDEVKDDLD 220
Query: 827 ESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
++G LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 221 KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 40/167 (23%)
Query: 716 GVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKK---QETFT 762
G +TAL+G SG GK+T++ D++ G + G + G Y + E
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS----LKGRVLFDGTDLYDPRVDPVEVRR 94
Query: 763 RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
RI +Q + PF ++YE++ + A ++ T M ELVE LR++
Sbjct: 95 RIGMVFQQPN---PFPKSIYENIAFGA------RINGYTGDM-----DELVE-RSLRKAA 139
Query: 822 V-----GLPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
V ESG LS Q++RL IA + P +I MDEP S LD
Sbjct: 140 VWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 32/162 (19%)
Query: 718 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKKQET--FTRIS 765
+TAL+G SG GK+T + D++ G + G+I + G Y + +
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRH----EGHIYLDGVDIYDPAVDVVELRKKV 86
Query: 766 GYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL-----NPLRQ 819
G Q +PF ++++++ Y LR+ E D + + +EE ++ L + L +
Sbjct: 87 GMVFQKP--NPFPKSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDK 142
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
S +GL G Q++RL IA + +P +I MDEP S LD
Sbjct: 143 SALGLSGG------QQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 60/258 (23%), Positives = 99/258 (38%), Gaps = 67/258 (25%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
++GP SGK+TL + G ++ G + ++G I E++
Sbjct: 35 IMGPNGSGKSTLAYTIMGHPKYEVT-EGEILFDG-------------------EDILELS 74
Query: 64 VRE------TLAFS--ARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQE 115
E LAF GV + D L A + P+ +K A
Sbjct: 75 PDERARAGIFLAFQYPVEIPGVTNS-DFLR-AAMNARRGARGILPEFIKELKEKA----- 127
Query: 116 ANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV-GPALALFMDEISTG 174
++LGL D+ + + G SGG+KKR ++++ P LA+ +DE +G
Sbjct: 128 ---------ELLGL---DEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAI-LDEPDSG 174
Query: 175 LDSSTTFQI---VNSIRQNIHILNGTAVISLLQPAPETYDLFDDII-----LLSDAQIVY 226
LD + +N++R+ G +I+ Q L D I +L D +IV
Sbjct: 175 LDIDALKIVAEGINALREEG---RGVLIITHYQ------RLLDYIKPDKVHVLYDGRIVK 225
Query: 227 QGPRELVLDFFESMGFKC 244
G EL + E G+
Sbjct: 226 SGDPELA-EELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 58/246 (23%), Positives = 105/246 (42%), Gaps = 61/246 (24%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDV 57
L+GP SGK+TL+ + D SGR+ +GH + ++ R +SQ DV
Sbjct: 30 TVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASLRRQIGLVSQ-DV 85
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ TV E +A+ +P + +AA + AN
Sbjct: 86 FLFNDTVAENIAYG-------------------------RPGATREEVEEAA----RAAN 116
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGI--SGGQKKRVTTGEMMVGPALALFMDEISTGL 175
++ ++ L DT++G+ RG+ SGGQ++R+ ++ L +DE ++ L
Sbjct: 117 -AHEF---IMELPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKDPPILILDEATSAL 169
Query: 176 DSSTTFQIVNSIRQNIHILNG--TAVI----SLLQPAPETYDLFDDIILLSDAQIVYQGP 229
D+ + + ++ ++ T VI S ++ A D I++L D +IV +G
Sbjct: 170 DTESERLVQAALE---RLMKNRTTFVIAHRLSTIENA-------DRIVVLEDGKIVERGT 219
Query: 230 RELVLD 235
E +L
Sbjct: 220 HEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 4e-05
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
LR+ L+ P + LS +++RL A L+ P +F+DE TS LD + + + ++
Sbjct: 80 LREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--- 135
Query: 877 DTGRTVVCTIHQPSIDIFES 896
+ G TV+ H+PS+ F
Sbjct: 136 ELGITVISVGHRPSLWKFHD 155
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-05
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 20/153 (13%)
Query: 723 GVSGAGKTTLMDVLAGRK---TGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVT 779
G SG GK+TL+ ++AG + +G G ++ P + R G Q+ P ++
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQSYALYPHLS 91
Query: 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL--RQSLVGLPGESGLSTEQRKR 837
V E++ S L+L E + + ++ E+++L L R+ P LS QR+R
Sbjct: 92 VAENM--SFGLKLAGAKKEEINQR-VNQVAEVLQLAHLLDRK-----PKA--LSGGQRQR 141
Query: 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 4e-05
Identities = 53/226 (23%), Positives = 83/226 (36%), Gaps = 59/226 (26%)
Query: 710 SGAFRPG-VLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFTRISG 766
G G V+ + G +G GKTT +LAG G + + IS Y K Q I
Sbjct: 359 GGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ----YIKP 411
Query: 767 YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826
TV + LL S ++ S + EI++ ++L L V
Sbjct: 412 --------DYDGTVED-LLRSI----TDDLGSS---YYKSEIIKPLQLERLLDKNV---- 451
Query: 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 886
LS + +R+ IA L + + +DEP++ LD V + +R + +
Sbjct: 452 -KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVV 510
Query: 887 -HQPSIDI------------FESFDEGIPGVE-------NIKDGYN 912
H DI F EG PG ++++G N
Sbjct: 511 DH----DIYMIDYISDRLMVF----EGEPGKHGHASGPMDMREGMN 548
|
Length = 590 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-05
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 44/200 (22%)
Query: 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 736
+ ++V+YS IL D +S + T ++G+SG+GK+TL +L
Sbjct: 473 DIVINDVSYSYGYGSN-----ILSD-------ISLTIKMNSKTTIVGMSGSGKSTLAKLL 520
Query: 737 AGRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPFV---TVYESLLYSAWL 790
G +G I ++G+ K T + Y Q P++ ++ E+LL A
Sbjct: 521 VGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE----PYIFSGSILENLLLGA-- 572
Query: 791 RLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP-------GESG--LSTEQRKRLTIA 841
+ + +EI E+ ++ + +P E G +S Q++R+ +A
Sbjct: 573 ---------KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALA 623
Query: 842 VELVANPSIIFMDEPTSGLD 861
L+ + ++ +DE TS LD
Sbjct: 624 RALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 4e-05
Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 18/176 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+L+G+S P ++G +GAGK+++++ L + G I I + T
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT-- 1306
Query: 765 SGYCEQNDIHSPFVTVYES-LLYSAWLRLPPEVDSETQKMFIEEIMELVEL-NPLRQSLV 822
D+ + +S +L+S +R + SE + E +E + + + ++
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 823 GLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
GL E S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 35/201 (17%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYITGNITISGYPKK 757
+L V +PG + G +G+GK++L +D+ G+ + I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL- 90
Query: 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLR--LPPEVDSETQKMFIEEIMELVELN 815
+R+S + + + +L+S +R L PE +++ E +E+ +L
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLW--EALEIAQLK 136
Query: 816 PLRQSLVG------LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
+ +SL G G S QR+ +A V SI+ MDE T+ +D I+
Sbjct: 137 NMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQ 196
Query: 870 RTVRNTVDTGRTVVCTIHQPS 890
+ V T RTVV H+ S
Sbjct: 197 KVVM-TAFADRTVVTIAHRVS 216
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-05
Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 45/234 (19%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDV 57
++G SGK+TLL L G + GR+ +G +++ R Y+ Q D
Sbjct: 501 KVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQ-DP 556
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ ++RE +A P+ + ++AA Q A
Sbjct: 557 FLFSGSIRENIALGN-------------------------PEATDEEIIEAA----QLAG 587
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
+ L + DT VG E +SGGQ++R+ ++ L +DE ++ LD
Sbjct: 588 AHEF----IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDP 642
Query: 178 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231
T I+ ++ Q IL G VI ++ T D II+L +IV QG E
Sbjct: 643 ETEAIILQNLLQ---ILQGRTVI-IIAHRLSTIRSADRIIVLDQGKIVEQGSHE 692
|
Length = 709 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 48/211 (22%), Positives = 82/211 (38%), Gaps = 57/211 (27%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
L+GP +GK+TLL + + +L SG + NG + + R Y+ + IG
Sbjct: 29 FVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDL-RGRAIPYLRRK---IG 81
Query: 61 ----------EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAA 110
+ V E +AF+ GV R E+ +R A
Sbjct: 82 VVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA---------------- 120
Query: 111 TEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDE 170
L+++GL + +SGG+++RV +V L DE
Sbjct: 121 -------------LELVGLSHKHRA-----LPAELSGGEQQRVAIARAIVNSPTILIADE 162
Query: 171 ISTGLDSSTTFQIVNSIRQNIHILNGTAVIS 201
+ LD TT++I+N + + I+ T V++
Sbjct: 163 PTGNLDPDTTWEIMN-LLKKINKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 134 DTLVGDEMVRG--ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNI 191
DT+VG+ RG +SGG+K+RV ++ L +DE ++ LD+ T +I ++R
Sbjct: 128 DTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD-- 182
Query: 192 HILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELV 233
+ G I + + D II+L D +IV +G EL+
Sbjct: 183 -VSKGRTTIVIAHRLSTIVNA-DKIIVLKDGRIVERGTHEELL 223
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-05
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 820 SLVGLPGES------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
LVGL LS Q++R+ +A L P + DEPT+GLD + ++
Sbjct: 150 ELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD 209
Query: 874 NTVDTGRTVVCTIH 887
N G+T++ H
Sbjct: 210 NLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 69/289 (23%), Positives = 121/289 (41%), Gaps = 38/289 (13%)
Query: 684 TYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RK 740
TY+ P E K LN S F+ +T ++G +G+GK+T++ + G +
Sbjct: 15 TYAKKTPFEFKA----------LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 741 TGGYITGNITISGYPKKQETFTRIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVD 797
TG I G+ I KK + R+ G Q + F E + + L
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 798 SETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 857
+K + E+++LV+L + P E LS Q++R+ +A + + + + +DEPT
Sbjct: 125 EAYKK--VPELLKLVQLP--EDYVKRSPFE--LSGGQKRRVALAGIIAMDGNTLVLDEPT 178
Query: 858 SGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFESFDEGIPGVE-NIKDGYNPAT 915
GLD + + R + + ++ H + DE I E + +P
Sbjct: 179 GGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSP-- 235
Query: 916 WMLEVTAKSQELT-LEIDFTDIY--------KGSELYRRNKALIEELSR 955
E+ + + LT +EID +Y KG +L +N IEE ++
Sbjct: 236 --FEIFSNQELLTKIEIDPPKLYQLMYKLKNKGIDLLNKNIRTIEEFAK 282
|
Length = 289 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 709 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTRISG 766
VS R G A++G +G+GK+TL +LAG T G I N + RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 767 -YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825
+ + N +P + + + LRL +++ E ++ I E + +V L P +
Sbjct: 92 IFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 6e-05
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDV 57
++GP SGK+TLL L D SG + +G + + + + AY+ Q D
Sbjct: 30 KVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQ-DP 85
Query: 58 HIGEMTVRE 66
+ T+RE
Sbjct: 86 FLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-05
Identities = 43/174 (24%), Positives = 65/174 (37%), Gaps = 23/174 (13%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
L+G +GK+TLL LAG+L+ SG VT Y+SQ E T
Sbjct: 34 LVGRNGAGKSTLLKILAGELEP---DSGEVTRP--------KGLRVGYLSQEPPLDPEKT 82
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKA-AATEGQEANVLTDY 122
V + + +G G ++L EL D + +G +
Sbjct: 83 VLDYVI-----EGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEE 137
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 176
L LG +D V +SGG ++RV ++ L +DE + LD
Sbjct: 138 ALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 6e-05
Identities = 70/263 (26%), Positives = 106/263 (40%), Gaps = 58/263 (22%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDS----KLKFSGRVTYNGHGMDEFVPQRTAAYISQHD 56
M LLGP SGKTTLL +AG L+ ++F G H D R ++ QH
Sbjct: 30 MVALLGPSGSGKTTLLRIIAG-LEHQTSGHIRFHGTDVSRLHARD-----RKVGFVFQHY 83
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
MTV + +AF LT L RRE +P+ AA +
Sbjct: 84 ALFRHMTVFDNIAFG------------LTVLPRRE-----RPN---------AAAIKAKV 117
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM-VGPALALFMDEISTGL 175
L LE+ + D +SGGQK+RV + V P + L +DE L
Sbjct: 118 TQL---------LEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI-LLLDEPFGAL 167
Query: 176 DSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVL 234
D+ ++ +RQ L T+V + E ++ D ++++S I G P ++
Sbjct: 168 DAQVRKELRRWLRQLHEELKFTSVF-VTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226
Query: 235 DFFESMGFKCPERKGVADFLQEV 257
+ P + V +F+ EV
Sbjct: 227 E---------PATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 44/182 (24%), Positives = 69/182 (37%), Gaps = 44/182 (24%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L +S + G AL+G SG+GK+TL+ +L G G IT+ G P
Sbjct: 18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVP---------- 65
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825
V+ E L S L +F + N +G
Sbjct: 66 ------------VSDLEKALSSLISVLNQRP-----YLFDTTLRN----N------LGRR 98
Query: 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 885
S +R+RL +A L+ + I+ +DEPT GLD ++ + V +T++
Sbjct: 99 ----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKDKTLIWI 153
Query: 886 IH 887
H
Sbjct: 154 TH 155
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 31/193 (16%)
Query: 689 MPKEMKLQGI-LEDKLMLLNGVSGAFRPGVLTALMGVSGAGKT----TLMDVL-AG-RKT 741
MP++++L+ I L+ L++GVS + G + AL+G SG+GK+ + +L AG R+T
Sbjct: 1 MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 742 GGYITGNITISGYPKKQETFT-RISGYCEQNDIHSPFVTVY-------ESLLYSAWLRLP 793
G + + G P R QN S F ++ E+ L P
Sbjct: 61 A----GRVLLDGKPVAPCALRGRKIATIMQNP-RSAFNPLHTMHTHARETCLALG---KP 112
Query: 794 PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853
+ + + +E V L + L P E +S +R+ IA+ L+ I
Sbjct: 113 ADDAT------LTAALEAVGLENAARVLKLYPFE--MSGGMLQRMMIALALLCEAPFIIA 164
Query: 854 DEPTSGLDARAAA 866
DEPT+ LD A A
Sbjct: 165 DEPTTDLDVVAQA 177
|
Length = 254 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 47/205 (22%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L V+ G TA +G +G+GK+T+M +L G G++ + T I+
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDD--------TLIT 72
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP--------- 816
+ DI V L++ + P E+Q +F E +++ V P
Sbjct: 73 STSKNKDIKQIRKKV--GLVF----QFP-----ESQ-LFEETVLKDVAFGPQNFGVSQEE 120
Query: 817 ----LRQSL--VGL--------PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
R+ L VG+ P E LS Q +R+ IA L P I+ +DEPT+GLD
Sbjct: 121 AEALAREKLALVGISESLFEKNPFE--LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178
Query: 863 RAAAIVMRTVRNTVDTGRTVVCTIH 887
+ +M + +G T+V H
Sbjct: 179 KGRKELMTLFKKLHQSGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 48/182 (26%), Positives = 71/182 (39%), Gaps = 48/182 (26%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQETFT 762
+ G+ F +TAL+G SG+GK+T + L +TG I G
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI-------- 87
Query: 763 RISGYCEQNDIHSPFVTVYE--SLLYSAWLRLPP-------------EVDSETQKMFIEE 807
DI+ + VYE + + R P E K ++E
Sbjct: 88 ---------DINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDE 138
Query: 808 IMELVELNPLRQSLV------GLPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSG 859
I+E L+Q+ + L +S LS Q++RL IA + P I+ MDEP S
Sbjct: 139 IVE----TSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASA 193
Query: 860 LD 861
LD
Sbjct: 194 LD 195
|
Length = 267 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
S LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 888 QPSI 891
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 56/227 (24%), Positives = 88/227 (38%), Gaps = 46/227 (20%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGM--DEFVPQRTAAYISQHDVHIGE 61
LLGP +GKTT L LAG L+ +G T +G + + +R ++S
Sbjct: 36 LLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDR 92
Query: 62 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTD 121
+T RE L + A G+ +G E +
Sbjct: 93 LTARENLEYFAGLYGL----------------------------------KGDELTARLE 118
Query: 122 YYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 181
LG+E + L D V G S G +++V +V L +DE +TGLD T
Sbjct: 119 ELADRLGME---ELL--DRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATR 173
Query: 182 QIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
+ IRQ + G ++ E L D +++L ++VY+G
Sbjct: 174 ALREFIRQLRAL--GKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 7e-05
Identities = 67/268 (25%), Positives = 106/268 (39%), Gaps = 83/268 (30%)
Query: 4 LLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEFVP--QRTAAYISQ----- 54
LLGP GKTTLL +AG + SG + +G + + VP +R + Q
Sbjct: 36 LLGPSGCGKTTLLRMIAGFEQPS-----SGEILLDGEDITD-VPPEKRPIGMVFQSYALF 89
Query: 55 -HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEG 113
H MTV E +AF + + ++ K+A I KA E
Sbjct: 90 PH------MTVEENVAFGLK-------------VRKKLKKAEI----------KARVEE- 119
Query: 114 QEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEIST 173
L+++GLE D +SGGQ++RV +V L +DE +
Sbjct: 120 ---------ALELVGLEG-----FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLS 165
Query: 174 GLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD------LFDDIILLSDAQIVYQ 227
LD+ Q+ +++ L T V T+D + D I +++D +I
Sbjct: 166 ALDAKLREQMRKELKELQRELGITFVYV-------THDQEEALAMSDRIAVMNDGRIEQV 218
Query: 228 G-PRELVLDFFESMGFKCPERKGVADFL 254
G P E+ ++ P + VADF+
Sbjct: 219 GTPEEI---------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 7e-05
Identities = 55/245 (22%), Positives = 87/245 (35%), Gaps = 71/245 (28%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA----AYISQHD 56
+ LLG +GKTTLL + G + + SGR+ ++G + P A AY+ +
Sbjct: 31 IVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGR 87
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVY--------MKA 108
+TV E L L R + + D + +VY +
Sbjct: 88 RIFPRLTVEENL---------------LLGAYARRDKEAQERDLE-EVYELFPRLKERR- 130
Query: 109 AATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE-MMVGPALALF 167
Q A L SGG+++ + +M P L L
Sbjct: 131 ----NQRAGTL--------------------------SGGEQQMLAIARALMSRPKL-LL 159
Query: 168 MDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLL---QPAPETYDLFDDIILLSDAQI 224
+DE S GL IV I + I L +++L Q A ++ D +L + +I
Sbjct: 160 LDEPSEGLAPK----IVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRI 215
Query: 225 VYQGP 229
V G
Sbjct: 216 VLSGT 220
|
Length = 237 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 7e-05
Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 55/233 (23%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDVHIG 60
+LG SGK+TLL LAG D + G +T NG + Q T + ++Q VH+
Sbjct: 369 ILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQ-RVHLF 424
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
T+R+ L + PD D + AA + L
Sbjct: 425 SGTLRDNLRLA-------------------------NPDAS-DEELWAAL----QQVGLE 454
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
+ +T +G E R +SGG+++R+ ++ A +DE + GLD T
Sbjct: 455 KL---LESAPDGLNTWLG-EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITE 510
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDL-----FDDIILLSDAQIVYQG 228
Q++ + + H T ++ T+ L D II+L + +I+ +G
Sbjct: 511 RQVLALLFE--HAEGKTLLMV-------THRLRGLERMDRIIVLDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 7e-05
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 795 EVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 854
EV ++K+ I + + L ++LVG S LS Q++R++IA ++ NP I+ +D
Sbjct: 548 EVVDVSKKVLIHDFVS--ALPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILILD 604
Query: 855 EPTSGLDARAAAIVMRTVRN 874
E TS LD ++ +V +T+ N
Sbjct: 605 EATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 41/166 (24%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT 762
+L+ VS +PG + L+G +GAGK+TL+ V+ G G I K+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 763 RISGYCEQN---DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE----LN 815
RI GY Q D P L + +LRL P +K I ++ V+ ++
Sbjct: 68 RI-GYVPQKLYLDTTLP-------LTVNRFLRLRPGT----KKEDILPALKRVQAGHLID 115
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
Q L G GE+ +R+ +A L+ P ++ +DEPT G+D
Sbjct: 116 APMQKLSG--GET-------QRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 8e-05
Identities = 53/226 (23%), Positives = 94/226 (41%), Gaps = 34/226 (15%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK--KQ 758
D +L GVS +TA++G SG GK+T + L + + + G + Q
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 759 ETFTR---ISGYCEQNDIHSPF-----VTVYESLLYSAWL---RLPPEVDSETQKMFIEE 807
+ R ++ Q + P ++VY+++ Y + R E+D +E
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD-----IVES 129
Query: 808 IMELVEL-----NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
++ +L + + +S + L G Q++RL IA L P ++ MDEP GLD
Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSGG------QQQRLCIARALAVKPKVLLMDEPCFGLDP 183
Query: 863 RAAAIVMRTVRN-TVDTGRTVVCTIHQ-PSIDIFESFDEGIPGVEN 906
A+ V +++ + + T+V H + F G EN
Sbjct: 184 IASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNEN 229
|
Length = 261 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 9e-05
Identities = 49/198 (24%), Positives = 75/198 (37%), Gaps = 48/198 (24%)
Query: 2 TLLLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEFVPQRTAAY-IS---QH 55
L+GP +GKTTL + G K S G V + G + P R A I+ Q
Sbjct: 33 VGLIGPNGAGKTTLFNLITGFYKPSS-----GTVIFRGRDITGLPPHRIARLGIARTFQI 87
Query: 56 DVHI-GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQ 114
+ +TV E +A A + S + E+EA + A
Sbjct: 88 -TRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREA-----------RERARE--- 132
Query: 115 EANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE----MMVGPALALFMDE 170
L+ +GL D G+ +S GQ++R+ E + P L L +DE
Sbjct: 133 --------LLEFVGLGELADRPAGN-----LSYGQQRRL---EIARALATQPKL-LLLDE 175
Query: 171 ISTGLDSSTTFQIVNSIR 188
+ GL+ T ++ IR
Sbjct: 176 PAAGLNPEETEELAELIR 193
|
Length = 250 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 63/254 (24%), Positives = 93/254 (36%), Gaps = 76/254 (29%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMD----EFVPQR-TAAYISQH--- 55
L+G SGK+TL LAG L SG + ++G +D E R + Q
Sbjct: 322 LVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378
Query: 56 --DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEG 113
+ MTV + LA R G GS A R
Sbjct: 379 SLNPR---MTVGDILAEPLRIHGGGSG-------AERRA--------------------- 407
Query: 114 QEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFM 168
L+++GL D +SGGQ++RV + ALA L +
Sbjct: 408 -----RVAELLELVGL----PPEFLDRYPHELSGGQRQRVA-----IARALALEPKLLIL 453
Query: 169 DEISTGLDSSTTFQIVNSIRQNIHILNGTAV-IS-----LLQPAPETYDLFDDIILLSDA 222
DE + LD S Q++N ++ L T + IS + A D + ++ D
Sbjct: 454 DEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA-------DRVAVMYDG 506
Query: 223 QIVYQGPRELVLDF 236
+IV +GP E V +
Sbjct: 507 RIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 58/250 (23%), Positives = 103/250 (41%), Gaps = 68/250 (27%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKF-SGRVTYNGHGMDEFVPQRTAAYIS---QHD 56
+T ++GP +GK+TLL ++ +L LK SG +T +G + + A +S Q +
Sbjct: 29 ITSIIGPNGAGKSTLL-SMMSRL---LKKDSGEITIDGLELTSTPSKELAKKLSILKQEN 84
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
+TVR+ + F R+ P Y + T+ E
Sbjct: 85 HINSRLTVRDLVGFG--------RF------------------P----YSQGRLTK--ED 112
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFMDEI 171
+ + ++ L LE D + DE+ SGGQ++R + LA + +DE
Sbjct: 113 RRIINEAIEYLHLEDLSDRYL-DEL----SGGQRQRA-----FIAMVLAQDTDYVLLDEP 162
Query: 172 STGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL------FDDIILLSDAQIV 225
LD + QI+ +R+ L T V+ L +D+ D I+ L + ++V
Sbjct: 163 LNNLDMKHSVQIMKILRRLADELGKTIVVVL-------HDINFASCYSDHIVALKNGKVV 215
Query: 226 YQGPRELVLD 235
QG + ++
Sbjct: 216 KQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 30/162 (18%), Positives = 47/162 (29%), Gaps = 50/162 (30%)
Query: 13 TTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA----AYISQHDVHIGEMTVRETL 68
+TLL + G L SG + +G ++ + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQ---PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 69 AFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLG 128
F R + + G+ D +
Sbjct: 58 FFGLR------DKEADARAEEALERVGLPDFLDREP------------------------ 87
Query: 129 LEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDE 170
V +SGGQK+RV ++ L +DE
Sbjct: 88 -------------VGTLSGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 36/224 (16%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKTGGYITGNITIS---G 753
D +L +S G + ++G SGAGK+ LM VL G T G I ++ + G
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 754 YPKKQETFTRISGYC------EQNDIHSPFVTVYESL-------------LYSA------ 788
Y ++ C E+ D + + + LY
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDN 130
Query: 789 WLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANP 848
L E+ E ++ + ++L+E+ L + + + LS +++R+ +A +L P
Sbjct: 131 VLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHIARD--LSGGEKQRVVLARQLAKEP 187
Query: 849 SIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSI 891
+ DEPT LD + A +V + V +G ++V T H P +
Sbjct: 188 FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 30/175 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKT----TLMDVLAGRKTGGYITGNITISG-----YPK 756
+ G+S G AL+G SG+GK+ +++ +L + +G+I G +
Sbjct: 26 VKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDGEDLLAASE 84
Query: 757 KQETFTRISGYCEQNDIH----------SPFVTVYESLLYSAWLRLPPEVDSETQKMFIE 806
+Q + G N I +P T+ L LRL + +
Sbjct: 85 RQ--LRGVRG----NKIGMIFQEPMTSLNPLHTI-GKQLAEV-LRLHRGLSRAAARARAL 136
Query: 807 EIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
E++ELV + + L P E LS QR+R+ IA+ L P ++ DEPT+ LD
Sbjct: 137 ELLELVGIPEPEKRLDAYPHE--LSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---------PKKQETFTRISGYCEQN 771
L+G SGAGK++L+ VL + +G + I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 772 DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831
P +TV ++L+ + P V ++ + +L+E L+ P LS
Sbjct: 91 YNLWPHLTVQQNLIEA-----PCRVLGLSKDQALARAEKLLERLRLKPYADRFPLH--LS 143
Query: 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 888
Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V H+
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 16/188 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQETFT 762
L GV+ RPG + L G SGAGK+TL+ ++ G R + G I I+ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 763 RIS-GYCEQNDIHSPFV--TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
R G Q+ H + TVY++ + +P + + + ++ L
Sbjct: 78 RRQIGMIFQD--HHLLMDRTVYDN------VAIPLIIAGASGDDIRRRVSAALDKVGLLD 129
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 879
P + LS +++R+ IA +V P+++ DEPT LD + ++R G
Sbjct: 130 KAKNFPIQ--LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 880 RTVVCTIH 887
TV+ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 709 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGY--PKKQETFTR 763
V+ + G A++G +G+GK+TL+ L G + T G +T G I+ KK + +
Sbjct: 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK 85
Query: 764 ISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPE---VDSETQKMFIEEIMELVELNP--L 817
G Q H F TV + + + P V E K E++ELV L L
Sbjct: 86 KVGIVFQFPEHQLFEETVEKDICFG------PMNFGVSEEDAKQKAREMIELVGLPEELL 139
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+S P E LS Q +R+ IA L P ++ +DEPT+GLD +
Sbjct: 140 ARS----PFE--LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179
|
Length = 290 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 29/166 (17%)
Query: 711 GAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYITGNITISGYPKKQETFTRISGY 767
G+ + ++G +G GKTT + +LAG G T+S P+
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQY---------- 69
Query: 768 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827
I + + LL S D T F EI + +++ + V
Sbjct: 70 -----IKADYEGTVRDLLSSI------TKDFYTHPYFKTEIAKPLQIEQILDREV----- 113
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 114 PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQ 54
+ L+GP SGK+TLL A+AG L SG + +G + + + R Y+ Q
Sbjct: 27 IVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 43/177 (24%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP--QRTAAYISQHDVHIGE 61
L+GP GK+TLL + G L + +G + N +D +P QR + Q +
Sbjct: 33 LMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAAQRQIGILFQDALLFPH 91
Query: 62 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTD 121
++V + L F+ A +G +
Sbjct: 92 LSVGQNLLFAL-----------------------------------PATLKGNARRNAAN 116
Query: 122 YYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
L+ GL + +SGGQ+ RV ++ AL +DE + LD +
Sbjct: 117 AALERSGL-----DGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 55/244 (22%), Positives = 100/244 (40%), Gaps = 56/244 (22%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDV 57
L+G SGK+TL+ + + SG++ +GH + ++ R A +SQ DV
Sbjct: 360 TVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQ-DV 415
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ T+ +A+ Q D A E+ A
Sbjct: 416 VLFNDTIANNIAYGRTEQ-----ADR----AEIERAL-------------------AAAY 447
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
D+ V L + DT +G+ V +SGGQ++R+ ++ A L +DE ++ LD+
Sbjct: 448 -AQDF---VDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDN 502
Query: 178 STTFQIVNSIRQNIHILNG--TAVI----SLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231
+ + ++ ++ G T VI S ++ A D I+++ D +IV +G
Sbjct: 503 ESERLVQAALE---RLMQGRTTLVIAHRLSTIEKA-------DRIVVMDDGRIVERGTHN 552
Query: 232 LVLD 235
+L
Sbjct: 553 ELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 29/197 (14%), Positives = 62/197 (31%), Gaps = 3/197 (1%)
Query: 991 NPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQP 1050
L+ + L FG G + + + + V + +
Sbjct: 48 ASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSF 107
Query: 1051 VVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMI---GFEWIAA 1107
A+ R + S + F + +PY+ V S + G+++ + G ++ +
Sbjct: 108 SSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGS 167
Query: 1108 KFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLW 1167
L + L +++ A+ V L SG P +P W
Sbjct: 168 LLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAW 227
Query: 1168 WRWYYWANPVAWTMYGL 1184
+ + NP+ + + L
Sbjct: 228 LQGISYINPLTYAIDAL 244
|
Length = 286 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 41/197 (20%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNITISGYPKKQETF 761
L VS G L+G +GAGK+TL+ +LAG I +G +T+ G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWL--RLPPEVDSETQKMFIEEIMELVELN---- 815
R+S +P +T E++ + L E+D I+EI+E EL
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE-----KIDEIIEFSELGDFID 137
Query: 816 -PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
P++ S+ + RL A+ P I+ +DE + DA R +R
Sbjct: 138 LPVKT----------YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRE 187
Query: 875 TVDTGRTVVCTIHQPSI 891
+ G+TV+ H PS
Sbjct: 188 LLKQGKTVILVSHDPSS 204
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L ++ + G ++G +G+GK+TL L G R G + + +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 764 ISGYCEQNDIHSPFV--TVYESLLYSAW-LRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
+ G QN + FV TV E L + L LPP E +K + E + L R
Sbjct: 78 LVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPP---IEIRKRVDRALAE-IGLEKYRHR 132
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
LS Q + + +A L P + DE TS LD + V+ ++ + G+
Sbjct: 133 -----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 881 TVVCTIH 887
T+V H
Sbjct: 188 TIVYITH 194
|
Length = 274 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 43/227 (18%)
Query: 710 SGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTRISGY 767
G G + ++G +G GKTT + +LAG + G ++ +S Y K Q G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE-DLKVS-Y-KPQYISPDYDG- 416
Query: 768 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827
TV + L + S F EI++ + L L + V
Sbjct: 417 -----------TVEDLL----RSAIRSAFGSS---YFKTEIVKPLNLEDLLERPV----- 453
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTI 886
LS + +R+ IA L + +DEP++ LD IV + +R ++ +T +
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVD 513
Query: 887 HQPSI-----DIFESFDEGIPGV-------ENIKDGYNPATWMLEVT 921
H + D F EG PG ++++G N L VT
Sbjct: 514 HDIYMIDYVSDRLIVF-EGEPGKHGHASPPMSMREGMNRFLKNLGVT 559
|
Length = 591 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 38/171 (22%)
Query: 718 LTALMGVSGAGKTTLM-------DVLAGRKTGGYI-----TGNITISGYPKKQETFTRIS 765
+TAL+G SG GK+T + D+ G G I NI +S E RIS
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI-LSPEVDPIEVRMRIS 102
Query: 766 GYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL 824
++ + PF +++E++ Y +R ++ +EE +E N LR + L
Sbjct: 103 MVFQKPN---PFPKSIFENVAYGLRIR------GVKRRSILEERVE----NALRNA--AL 147
Query: 825 PGES---------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
E LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 148 WDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 827 ESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 884
SG LS Q++RL IA + +P +I MDEP S LD A + + + + TVV
Sbjct: 176 SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVI 234
Query: 885 TIH 887
H
Sbjct: 235 VTH 237
|
Length = 285 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 50/208 (24%)
Query: 680 FDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 739
F EV+YS K +L + +S F G + ++G SGAGK+TL+ ++
Sbjct: 6 FKEVSYSSF------------GKEILKD-ISVKFEGGAIYTIVGPSGAGKSTLIKLI--N 50
Query: 740 KTGGYITGNITISGYPKKQ----ETFTRISGYCEQNDIHSPFV---TVYESLLYSAWLRL 792
+ G+I I G K + +I +Q P + TV +++ Y L+
Sbjct: 51 RLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQ-----PHLFEGTVKDNIEYGPMLKG 105
Query: 793 PPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE------SGLSTEQRKRLTIAVELVA 846
VD E S+VGL E LS + +R++IA L
Sbjct: 106 EKNVDVE-----------------YYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN 148
Query: 847 NPSIIFMDEPTSGLDARAAAIVMRTVRN 874
NP ++ +DEPTS LD + I+ +
Sbjct: 149 NPEVLLLDEPTSALDPTSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 57/235 (24%), Positives = 90/235 (38%), Gaps = 67/235 (28%)
Query: 4 LLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHI 59
LGP +GKTT + + G K D SG +T++G + +R A I +
Sbjct: 31 FLGPNGAGKTTTMKIILGLIKPD-----SGEITFDGKSYQKNIEALRRIGALIEAPGFY- 84
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVL 119
+T RE L AR G+ ID
Sbjct: 85 PNLTARENLRLLARLLGI--------------------RKKRIDE--------------- 109
Query: 120 TDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSS 178
L V+GL+ + V+G S G K+R+ ++G P L L +DE + GLD
Sbjct: 110 ---VLDVVGLKD-----SAKKKVKGFSLGMKQRLGIALALLGNPDL-LILDEPTNGLDP- 159
Query: 179 TTFQIVNSIRQNIHILN---GTAVIS--LLQPAPETYDLFDDIILLSDAQIVYQG 228
+ +R+ I L T +IS LL E + D I +++ +++ +G
Sbjct: 160 ---DGIKELRELILSLRDQGITVLISSHLLS---EIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 46/187 (24%), Positives = 61/187 (32%), Gaps = 68/187 (36%)
Query: 4 LLGPPCSGKTT---LLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRT------AAYISQ 54
LLGP +GKTT +LL L + G E VP R + Q
Sbjct: 38 LLGPNGAGKTTTLRMLLGLTHPDAGSISLCG----------EPVPSRARHARQRVGVVPQ 87
Query: 55 HDVHIGEMTVRETLAFSARCQGVGS-----RYDMLTELARREKEAGIKPDPDIDVYMKAA 109
D + TVRE L R G+ + L E A+ E +A
Sbjct: 88 FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA--------------- 132
Query: 110 ATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMD 169
D V +SGG K+R+T +V L +D
Sbjct: 133 -----------------------------DAKVGELSGGMKRRLTLARALVNDPDVLVLD 163
Query: 170 EISTGLD 176
E +TGLD
Sbjct: 164 EPTTGLD 170
|
Length = 306 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 39/176 (22%), Positives = 62/176 (35%), Gaps = 62/176 (35%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
+LGP GK+TLL +AG L+ SG V +G + P Y+ Q D + +T
Sbjct: 34 ILGPSGCGKSTLLRLIAG-LEK--PTSGEVLLDGRPVTGPGPDI--GYVFQEDALLPWLT 88
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
V + +A +G ++ E K
Sbjct: 89 VLDNVALGLELRGK----------SKAEARERAK------------------------EL 114
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA---------LFMDE 170
L+++GL D+ +SGG ++RV A+A L +DE
Sbjct: 115 LELVGL-----AGFEDKYPHQLSGGMRQRV---------AIARALATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 41/233 (17%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
++G SGK+TL KL + +VP+ + HD+ + +
Sbjct: 33 IVGRSGSGKSTL-----TKLIQRF---------------YVPENGRVLVDGHDLALAD-- 70
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
A+ R GV + ++L + R+ A P ++ ++AA G +
Sbjct: 71 ----PAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISE--- 123
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 183
L DT+VG++ G+SGGQ++R+ ++ L DE ++ LD ++
Sbjct: 124 -----LPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALD----YES 173
Query: 184 VNSIRQNIH-ILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
++I +N+H I G VI ++ T D II++ +IV QG + +L
Sbjct: 174 EHAIMRNMHDICAGRTVI-IIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 4e-04
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 23/101 (22%)
Query: 146 SGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVI 200
SGG ++RV M+ ALA L DE +T LD + QI++ +++ + GTA+I
Sbjct: 155 SGGMRQRV-----MIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE-LQREKGTALI 208
Query: 201 SLLQPAPETYDL------FDDIILLSDAQIVYQGPRELVLD 235
+ T+DL D + ++ +IV +GP E +
Sbjct: 209 LI------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 66/251 (26%), Positives = 107/251 (42%), Gaps = 69/251 (27%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKL---DSKLKFSGR-VTYNGHGMDEFVPQRTAAYISQH- 55
M LLGP +GK+TL L G L ++ G + Y+ + E ++T + Q+
Sbjct: 30 MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV--RKTVGIVFQNP 87
Query: 56 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQE 115
D + TV E +AF G+ E+ +R KEA +KA EG E
Sbjct: 88 DDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA-----------LKAVGMEGFE 131
Query: 116 ANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT-TGEMMVGPALALFMDEISTG 174
++ +SGGQKKRV G + + P + + +DE ++G
Sbjct: 132 -----------------------NKPPHHLSGGQKKRVAIAGILAMKPEI-IVLDEPTSG 167
Query: 175 LDSSTTFQIVNSIRQNIHILNG---TAVISLLQPAPETYDL------FDDIILLSDAQIV 225
LD QI+ ++ LN T +IS T+D+ D + ++SD +I+
Sbjct: 168 LDPMGASQIMKL----LYDLNKEGITIIIS-------THDVDLVPVYADKVYVMSDGKII 216
Query: 226 YQG-PRELVLD 235
+G P+E+ D
Sbjct: 217 KEGTPKEVFSD 227
|
Length = 275 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 30/170 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQETFTR 763
L ++ G AL+G SG+GK+T+ ++L T Y G I + G+ + T
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 764 ISGYC---EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL------ 814
+ QN +H T+ ++ Y+ T++ E+I E +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYAR-----------TEQYSREQIEEAARMAYAMDF 462
Query: 815 -NPLRQSLVGLPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
N + L + GE+G LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 463 INKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
|
Length = 582 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-----YPKKQETFTRISGYCEQ 770
G TA++G +G GK+TL+ L+ T G++ + G Y K E RI G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASK-EVARRI-GLLAQ 88
Query: 771 NDIHSPFVTVYESL---------LYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
N +TV E + L++ W + + ++ T+ M I L QS+
Sbjct: 89 NATTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLA-----DQSV 141
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 142 ------DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 4e-04
Identities = 36/185 (19%), Positives = 54/185 (29%), Gaps = 65/185 (35%)
Query: 715 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIH 774
PG + ++G G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 775 SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834
E + L+ L +VG SG
Sbjct: 39 --------------------------------EDILEEVLDQLLLIIVGGKKASG---SG 63
Query: 835 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTI 886
RL +A+ L P ++ +DE TS LDA A+++ + TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 887 HQPSI 891
+
Sbjct: 124 NDEKD 128
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-04
Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 45/234 (19%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH---GMDEFVPQRTAAYISQHDV 57
++GP SGK+TL+ L D SG + +G + ++ +SQ D
Sbjct: 357 KVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQ-DP 412
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ T+RE +A G E+ K A +
Sbjct: 413 LLFSGTIRENIAL-------GRPDATDEEIEEALKLANAH-----EFIAN---------- 450
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
L D Y DT+VG E +SGGQ++R+ ++ L +DE ++ LD+
Sbjct: 451 -LPDGY----------DTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498
Query: 178 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231
T I +++++ + T +I + + T D II+L + +IV +G E
Sbjct: 499 ETEALIQDALKKLLK--GRTTLIIAHRLS--TIKNADRIIVLDNGRIVERGTHE 548
|
Length = 567 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 47/238 (19%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYIS---QHDVH 58
T L+GP GK+TLL A L + SG V + ++ A ++ QH +
Sbjct: 31 TALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLT 87
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
+TVRE +A+ G P ++ E N
Sbjct: 88 PEGITVRELVAY------------------------GRSP------WLSLWGRLSAEDNA 117
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
+ ++ + D + D +SGGQ++R ++ + +DE +T LD +
Sbjct: 118 RVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDIN 172
Query: 179 TTFQIVNSIRQNIHILN--GTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234
+++ +R+ LN G V+++L + D +++L++ ++ QG E V+
Sbjct: 173 HQVELMRLMRE----LNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 66/251 (26%), Positives = 99/251 (39%), Gaps = 53/251 (21%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSK-----LKFSGRVTYNGHGMDEFVPQRTA---AYI 52
+T LLG +GK+TLL ALAG L + +G VT NG + R A A +
Sbjct: 29 VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVL 88
Query: 53 SQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATE 112
Q + AFSAR + RY ARR AG D ++ +A A
Sbjct: 89 PQ--------AAQPAFAFSAREIVLLGRYPH----ARR---AGALTHRDGEIAWQALALA 133
Query: 113 GQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM---------VGPA 163
G LVG + V +SGG+ RV ++ P
Sbjct: 134 GA-------------------TALVGRD-VTTLSGGELARVQFARVLAQLWPPHDAAQPP 173
Query: 164 LALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQ 223
L +DE + LD + ++++++R+ N V++++ D I +L+D
Sbjct: 174 RYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPNLAARHADRIAMLADGA 232
Query: 224 IVYQGPRELVL 234
IV G VL
Sbjct: 233 IVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 6e-04
Identities = 56/246 (22%), Positives = 98/246 (39%), Gaps = 70/246 (28%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKF----SGRVTYNGHGMDEFVPQ---RTAAYISQHD 56
L+G GK+T++ L +F SG + +G + + + +SQ +
Sbjct: 34 LVGSSGCGKSTVVSLL-------ERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQ-E 85
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
+ + T+ E + + G E+ K+A I D M
Sbjct: 86 PVLFDGTIAENIRY-------GKPDATDEEVEEAAKKANIH-----DFIMS--------- 124
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRG--ISGGQKKRVTTGEMMV-GPALALFMDEIST 173
L D Y DTLVG+ RG +SGGQK+R+ ++ P + L +DE ++
Sbjct: 125 --LPDGY----------DTLVGE---RGSQLSGGQKQRIAIARALLRNPKI-LLLDEATS 168
Query: 174 GLDSSTTFQIVNSIRQNIHILNGTAVI-----SLLQPAPETYDLFDDIILLSDAQIVYQG 228
LD+ + ++V + T ++ S ++ A D I +L + Q+V QG
Sbjct: 169 ALDAESE-KLVQEALDRA-MKGRTTIVIAHRLSTIRNA-------DLIAVLQNGQVVEQG 219
Query: 229 -PRELV 233
EL+
Sbjct: 220 THDELM 225
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 144 GISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISL 202
G SGG+KKR ++++ P LA+ DE +GLD + I + +I+
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 203 LQPAPETYDLFDDII-----LLSDAQIVYQGPRELVLDFFE 238
Q L D I +L D +IV G +EL L+ +
Sbjct: 163 YQ------RLLDYIKPDRVHVLYDGRIVKSGDKELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 6e-04
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 23/192 (11%)
Query: 707 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQ-ETFT 762
+S + G + G+ G+G+T LM+ L G R G IS P+ +
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS--PRSPLDAVK 337
Query: 763 RISGYCEQNDIHSPF---------VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE 813
+ Y ++ + F + + SL + ++ E EL+
Sbjct: 338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA 397
Query: 814 L--NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
L + + Q++ L G + Q+K L I+ L P +I DEPT G+D A A + +
Sbjct: 398 LKCHSVNQNITELSGGN-----QQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKV 451
Query: 872 VRNTVDTGRTVV 883
+R D G+ ++
Sbjct: 452 MRQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 6e-04
Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 38/195 (19%)
Query: 689 MPKEMKLQGI--LEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG- 738
M ++K++G+ K +L ++ F +TA++G SG GK+TL+ D+++G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 739 RKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVD 797
R G + N I + G Q +PF ++++++ + P +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP--NPFPKSIFDNVAFG------PRML 112
Query: 798 SETQKMFIEEIMELVELNPLRQSLV-----------GLPGESGLSTEQRKRLTIAVELVA 846
T + ++E++E LRQ+ + GL LS Q++RL IA L
Sbjct: 113 GTTAQSRLDEVVE----KSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAI 164
Query: 847 NPSIIFMDEPTSGLD 861
P +I MDEP S LD
Sbjct: 165 EPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 7e-04
Identities = 30/226 (13%), Positives = 76/226 (33%), Gaps = 10/226 (4%)
Query: 325 LLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFF 384
L+ + ++L+ + + + H + S +
Sbjct: 35 FLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGV 94
Query: 385 AVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYA---AWAYALPAWILKIPISFLEVAVWV 441
+M +F+G+ + + + + L + + ++ L + +
Sbjct: 95 ILMSVLFSGIF-SFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVL 153
Query: 442 FLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA--AGRNMIVAMSFGSFVLLVL 499
+ +++G L LLLLL+ +A+ + + A + A + G+ ++L L
Sbjct: 154 LVIAFLLGVPFLGSLLL--LLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPL 211
Query: 500 FAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSWRKF 545
G + + W + +P+ YA +A+ + WR
Sbjct: 212 GFLSGVFFPLELLPAWLQGISYINPLTYAIDAL--RYVYLGGWRND 255
|
Length = 286 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 7e-04
Identities = 20/109 (18%), Positives = 39/109 (35%)
Query: 1082 IPYIFVLSSVYGIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAA 1141
+ + V II+ + G L L + G + ++ N A
Sbjct: 145 LGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAI 204
Query: 1142 IVSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFG 1190
+V + L + F G + P +P + +W + P + GL+ +G
Sbjct: 205 LVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYG 253
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKK 757
D ++ VS G + AL+G SG GK+TL+ +LAG + G + + +S P
Sbjct: 30 DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY 89
Query: 758 QETFTRISGYCEQNDIHSPFVTVYESLLYS-AWLRLPP-EVDSETQKMFIEEIMELVELN 815
Q + Q+ P +TV +++ + +LP E+ S + E++ LV +
Sbjct: 90 QRPINMMF----QSYALFPHMTVEQNIAFGLKQDKLPKAEIASR-----VNEMLGLVHMQ 140
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+ P + LS QR+R+ +A L P ++ +DEP LD +
Sbjct: 141 EFAKRK---PHQ--LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
|
Length = 377 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-04
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 826 GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
GE G LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + T+ GRT +
Sbjct: 471 GERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMKGRTTL 529
Query: 884 CTIHQ 888
H+
Sbjct: 530 IIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 7e-04
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 35/198 (17%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP-KKQ-E 759
+L +G+S G L + G +GAGKT+L+ +LAG R G + G P ++Q +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ----GEPIRRQRD 70
Query: 760 TFTRISGYC-EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ + Y Q I +T E+L + RL D E L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDDEA----------------LW 111
Query: 819 QSL--VGLPG-E----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
++L VGL G E LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 872 VRNTVDTGRTVVCTIHQP 889
+ + G V+ T HQ
Sbjct: 172 LAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 8e-04
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 804 FIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
FIE + + N VG G+S LS Q++R+ IA L+ P I+ +DE TS LD+
Sbjct: 1340 FIESLPNKYDTN------VGPYGKS-LSGGQKQRIAIARALLREPKILLLDEATSSLDSN 1392
Query: 864 AAAIVMRTVRNTVDTG-RTVVCTIHQ 888
+ ++ +T+ + D +T++ H+
Sbjct: 1393 SEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 9e-04
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 41/232 (17%)
Query: 672 PFEPHSLTFDEV-------TYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGV 724
P EPH + D + + V P ++ + VS + R G + + G+
Sbjct: 247 PHEPHEIG-DVILEARNLTCWDVINPHRKRV-----------DDVSFSLRRGEILGVAGL 294
Query: 725 SGAGKTTLMDVLAGRKTGGYITGNITISGYP-----KKQETFTRISGYCEQNDIHS--PF 777
GAG+T L+ L G G + GN+ I+G P Q I+ E H P
Sbjct: 295 VGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPI 353
Query: 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMEL------VELNPLRQSLVGLPGESGLS 831
+ V +++ S + S KM I+ EL ++ ++ + LP LS
Sbjct: 354 LGVGKNITLSV-------LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-IGRLS 405
Query: 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
+++ +A L+ NP ++ +DEPT G+D A + + + G ++
Sbjct: 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 9e-04
Identities = 45/183 (24%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTRISGYCEQNDI 773
G LT ++G G GK++L+ + G + G + + P + T +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 774 HSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIE--EIMELVELNPL-RQSLVGLPGE 827
P++ TV E++ + + + + K + + ++L P Q+ +G G
Sbjct: 86 QKPWLLNATVEENITFGS------PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI 139
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRTVVCT 885
+ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT+V
Sbjct: 140 N-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 886 IHQ 888
H+
Sbjct: 199 THK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 43/176 (24%), Positives = 63/176 (35%), Gaps = 47/176 (26%)
Query: 4 LLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIG 60
LLGP GKTTLL +AG SG + +G + P +R + Q+
Sbjct: 31 LLGPSGCGKTTLLRLIAGFETPT-----SGEILLDGKDITNLPPHKRPVNTVFQNYALFP 85
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
+TV E +AF R + + E+ R EA
Sbjct: 86 HLTVFENIAFGLRLKKLPK-----AEIKERVAEA-------------------------- 114
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 176
L ++ LE + +SGGQ++RV +V L +DE LD
Sbjct: 115 ---LDLVQLEG-----YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 55/247 (22%), Positives = 93/247 (37%), Gaps = 53/247 (21%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
+LGP GKTTLL +AG + G + NG ++ P + Q++ + +
Sbjct: 36 VLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGAERGVVFQNEALLPWLN 90
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
V + +AF + +G+ RRE +
Sbjct: 91 VIDNVAFGLQLRGIEKA-------QRRE---------------------------IAHQM 116
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQ 182
L ++GLE + + +SGG ++RV + V P L L +DE LD+ T Q
Sbjct: 117 LALVGLE---GA--EHKYIWQLSGGMRQRVGIARALAVEPQL-LLLDEPFGALDALTREQ 170
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS--DAQIVYQGPRELVLDFFESM 240
+ + ++ G V+ + E L +++LS ++V L LDF
Sbjct: 171 M-QELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVV----ERLPLDFARRY 225
Query: 241 GFKCPER 247
P R
Sbjct: 226 AAGEPSR 232
|
Length = 259 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 115 EANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT-TGEMMVGPALALFMDEIST 173
EA L +YL +GL DD+ + + G+SGGQK+RV G + + P + +F DE +
Sbjct: 151 EAKKLAKFYLNKMGL---DDSYL-ERSPFGLSGGQKRRVAIAGILAIQPEILIF-DEPTA 205
Query: 174 GLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PREL 232
GLD +++ I N V + ++ D++I++ +I+ G P E+
Sbjct: 206 GLDPKGEHEMMQLILDAKA--NNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEI 263
Query: 233 VLD 235
D
Sbjct: 264 FTD 266
|
Length = 320 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 57/249 (22%), Positives = 104/249 (41%), Gaps = 45/249 (18%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYI---SQHDVH 58
T ++GP GK+TLL L+ + G V +G + + + A I +Q+
Sbjct: 36 TAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATT 92
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
G++TV+E +A RY R KE D + A T+ +A
Sbjct: 93 PGDITVQELVA--------RGRYPHQPLFTRWRKE-----DEE-------AVTKAMQATG 132
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
+T + D+ V +SGGQ++R ++ + +DE +T LD S
Sbjct: 133 ITH---------------LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS 177
Query: 179 TTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVL-DF 236
++ + + ++ G + ++L + +I L + +IV QG P+E+V +
Sbjct: 178 HQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAEL 236
Query: 237 FESM-GFKC 244
E + G +C
Sbjct: 237 IERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 43/180 (23%), Positives = 65/180 (36%), Gaps = 48/180 (26%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGG--YITGNITISGYPKKQETF 761
L+GVS G A++G SG GK+TL + + TGG Y G + + +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKADPEAQKL 89
Query: 762 TRISGYCEQNDIHSPFVTVYESL--------LYSAWLRLPPEVDSETQKMFIEEIMELVE 813
R I F Y SL + L + + + ++ +M V
Sbjct: 90 LR-------QKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKV- 141
Query: 814 LNPLRQSLVGLPGESGLSTE------------QRKRLTIAVELVANPSIIFMDEPTSGLD 861
GL E QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 142 ---------------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 46/187 (24%), Positives = 74/187 (39%), Gaps = 55/187 (29%)
Query: 718 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQ 770
+TA +G SG GK+T + D + K + G + I G I Y
Sbjct: 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDG----------IDVYSVD 78
Query: 771 NDI-------------HSPFV-TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
++ +PF ++Y+++ Y P K ++EI+E
Sbjct: 79 TNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG-----PKLHGLAKNKKKLDEIVE----KS 129
Query: 817 LRQSLVGLPGESG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 867
L VGL E G LS Q++RL IA + P+++ MDEP S LD A +
Sbjct: 130 LTS--VGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNV 187
Query: 868 VMRTVRN 874
+ ++
Sbjct: 188 IENLIQE 194
|
Length = 251 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
LS Q++R+ IA L NPS+I +DE TS LD A ++ VR
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVR 186
|
Length = 269 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.001
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 46/183 (25%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGYPKKQETFTRI 764
+ G+ G L+G SG GK+TL+ ++AG + IT G I I G R+
Sbjct: 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGG---------RV 67
Query: 765 SGYCE----------QNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL 814
E QN P ++V E++ Y +R P+ + E + + E ++EL
Sbjct: 68 VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEER---VAEAARILEL 124
Query: 815 NPL-----RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAI 867
PL R+ LS QR+R+ + +V P++ DEP S LDA R
Sbjct: 125 EPLLDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ-- 172
Query: 868 VMR 870
MR
Sbjct: 173 -MR 174
|
Length = 356 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 28/204 (13%)
Query: 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--------- 753
L +L+G++ + G AL+G SG+GK+T++ +L + G I + G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 754 ----YPKKQETFTRIS---GYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFI 805
P ++ ++ G Q+ P TV +++ + L L ++E + M
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAM-- 128
Query: 806 EEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 865
EL+++ L +P + LS Q++R+ IA L P ++ DE TS LD
Sbjct: 129 ----ELLDMVGLADKADHMPAQ--LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 866 AIVMRTVRN-TVDTGRTVVCTIHQ 888
V+ +R + T++ H+
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 24/170 (14%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFT 762
L+ V+ G L+G +G+GK+TL+ L G +G I + I+ K
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 763 RISGYCEQNDIHSPFV-TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
+ G Q + F T+ + + + + E + ++ M +V
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFG--PINLGLSEEEIENR-VKRAMNIV--------- 130
Query: 822 VGLPGES-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 864
GL E LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 131 -GLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.001
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 30/195 (15%)
Query: 709 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYC 768
VS + G A++G +GAGKTTL+++L ++ G I I G T TR
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGI--DINTVTR----- 404
Query: 769 EQNDIHSPFVTVYESL-LYSAWLRLPPEVDSETQKMFIEEIMELVE-------LNPLRQS 820
+ TV++ L++ +R + E EE+ E + +
Sbjct: 405 --ESLRKSIATVFQDAGLFNRSIRENIRLGREGATD--EEVYEAAKAAAAHDFILKRSNG 460
Query: 821 LVGLPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
L GE G LS +R+RL IA ++ N I+ +DE TS LD A V+N +D
Sbjct: 461 YDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RVKNAIDA 516
Query: 879 ---GRTVVCTIHQPS 890
RT H+ S
Sbjct: 517 LRKNRTTFIIAHRLS 531
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 18/193 (9%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 759
E + LNGVS + G +++G +G+GK+T ++ G G + I G E
Sbjct: 17 ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAE 74
Query: 760 T---FTRISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
R G QN D TV + + + E Q + EE+++ V+
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM----------ENQGIPREEMIKRVDEA 124
Query: 816 PLRQSLVGLPGE--SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
L +++ + LS Q++R+ +A + P II +DE TS LD +MR +
Sbjct: 125 LLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIH 184
Query: 874 NTVDTGRTVVCTI 886
+ + V +I
Sbjct: 185 EIKEKYQLTVLSI 197
|
Length = 277 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 990 RNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQ 1049
++ + +R AL G M+W + D+ + +G ++ F G +
Sbjct: 404 KHESFNTLRVFQVIAAALLAGLMWWHSDFR-----DVQDRLGLLFFISIFWGVFPSFNSV 458
Query: 1050 PVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFE 1103
V ERA+F +E+ +GMY+ Y A+++ ++P +L +++ + Y M G +
Sbjct: 459 FVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLK 512
|
Length = 659 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 48/179 (26%), Positives = 66/179 (36%), Gaps = 52/179 (29%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAA------YISQHDV 57
LLGP +GK+T+ L G + G++T + E VP R + Q D
Sbjct: 35 LLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSRARLARVAIGVVPQFDN 87
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
E TVRE L R G ++ RE EA I
Sbjct: 88 LDPEFTVRENLLVFGRYFG----------MSTREIEAVIPS------------------- 118
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 176
L+ LE D V +SGG K+R+T ++ L +DE +TGLD
Sbjct: 119 -----LLEFARLESKADVRVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 59/244 (24%), Positives = 89/244 (36%), Gaps = 64/244 (26%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH-----GMDEFVP--QRTAAYISQ 54
T L GP SGKT+L+ +AG GR+ NG F+P +R Y+ Q
Sbjct: 27 TALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83
Query: 55 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQ 114
TVR L Y + Q
Sbjct: 84 DARLFPHYTVRGNLR-----------------------------------YGMWKSMRAQ 108
Query: 115 EANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE-MMVGPALALFMDEIST 173
D + +LG+E L+ D +SGG+K+RV G ++ P L L MDE
Sbjct: 109 -----FDQLVALLGIE----HLL-DRYPGTLSGGEKQRVAIGRALLTAPEL-LLMDEPLA 157
Query: 174 GLDSSTTFQI---VNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230
LD +I + +R I+I ++ + E L D +++L + ++ GP
Sbjct: 158 SLDLPRKREILPYLERLRDEINI----PILYVSHSLDEVLRLADRVVVLENGKVKASGPL 213
Query: 231 ELVL 234
E V
Sbjct: 214 EEVW 217
|
Length = 352 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 143 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISL 202
R +SGG+K+RV + DE + LD T + N++ + + + V++
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT- 225
Query: 203 LQPAPETY-DLFDDIILLSDAQIVYQG-PRELVLDFFESMGFKCPERKGVADFLQEVTSR 260
PE DL D I L + +I +G P E+V F E G E++ + + +
Sbjct: 226 -SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME--GVSEVEKECEVEVGEPIIKV 282
Query: 261 KDQQQYWV 268
++ + ++
Sbjct: 283 RNVSKRYI 290
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 145 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQ 204
+SGGQK+RV ++ L +DE + GLD +I+N I + +H +I +
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKI-KELHKEYNMTIILVSH 203
Query: 205 PAPETYDLFDDIILLSDAQIVYQG-PRELV--LDFFESMGFKCPE 246
+ L D II+++ + QG PRE+ ++ ES+G P+
Sbjct: 204 SMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 829 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 884
LS +++ +A+ L + + +DE GLD R + + + G V+
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136
Query: 885 TIHQPSIDIFESFD 898
H P ++ E D
Sbjct: 137 ITHLP--ELAELAD 148
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 56/253 (22%), Positives = 100/253 (39%), Gaps = 78/253 (30%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+L +S +F PG ++G++GAGK+TL+ ++AG +G +
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--------EFNGEARPAPGIKV- 70
Query: 765 SGYCEQNDIHSPFVTVYE-------------------SLLYSAWLRLPPEVDSETQKMF- 804
GY Q P TV E S ++ E D++ +
Sbjct: 71 -GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA-------EPDADMDALLA 122
Query: 805 ----IEEIMELVEL----NPLRQSLVGL---PGE---SGLSTEQRKRLTIAVELVANPSI 850
++EI++ + L ++ L P + + LS +R+R+ + L++ P +
Sbjct: 123 EQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDM 182
Query: 851 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEGIPGVENIKDG 910
+ +DEPT+ LDA + A + + ++ G TVV H D
Sbjct: 183 LLLDEPTNHLDAESVAWLEQHLQEY--PG-TVVAVTH---------------------DR 218
Query: 911 Y---NPATWMLEV 920
Y N A W+LE+
Sbjct: 219 YFLDNVAGWILEL 231
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 41.3 bits (96), Expect = 0.002
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 57/229 (24%)
Query: 650 QLLSQREVTVGAIQ--PKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLN 707
LS E+ +I+ K G H+ TF T++ D+P LN
Sbjct: 612 IFLSHEELEPDSIERRTIKPGEGNSITVHNATF---TWARDLPPT-------------LN 655
Query: 708 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFTRIS 765
G++ + G L A++G G GK++L+ L K G++ +++ P++
Sbjct: 656 GITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWI----- 710
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825
QND ++ E++L+ L + + ++++E L P L LP
Sbjct: 711 ----QND------SLRENILFGKAL----------NEKYYQQVLEACALLP---DLEILP 747
Query: 826 -------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 865
GE G LS Q++R+++A + +N I D+P S +DA
Sbjct: 748 SGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---------YPK 756
+ G+S +TA++G SG GK+T + L + G + + G Y
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTL---NRISELEGPVKVEGVVDFFGQNIYDP 79
Query: 757 KQET--FTRISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIME-LV 812
+ R G Q +PF +++YE++ Y + ++ + ++EI+E +
Sbjct: 80 RININRLRRQIGMVFQRP--NPFPMSIYENVAYGV------RISAKLPQADLDEIVESAL 131
Query: 813 ELNPLRQSLVGLPGES--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
+ L Q + +S GLS Q++RL IA L P ++ MDEP S LD A V
Sbjct: 132 KGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.003
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQ 54
+ +LGP +GK+TLL LAG L SG + +G + P+ R AY+ Q
Sbjct: 27 IVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 56/251 (22%), Positives = 95/251 (37%), Gaps = 65/251 (25%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHG--------MDEFVPQRTA----AY 51
++G SGK+TLL LAG+L G TY + E +R +
Sbjct: 34 IVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGF 90
Query: 52 ISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAAT 111
+ Q+ M V R +G+R+ Y AT
Sbjct: 91 VHQNPRDGLRMRVSAGANIGERLMAIGARH-----------------------YGNIRAT 127
Query: 112 EGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV-GPALALFMDE 170
D+ +V E+ + D++ R SGG ++R+ +V P L +FMDE
Sbjct: 128 AQ-------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIARNLVTRPRL-VFMDE 174
Query: 171 ISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD------LFDDIILLSDAQI 224
+ GLD S ++++ +R + L +I T+D L ++++ ++
Sbjct: 175 PTGGLDVSVQARLLDLLRGLVRDLGLAVIIV-------THDLGVARLLAQRLLVMQQGRV 227
Query: 225 VYQGPRELVLD 235
V G + VLD
Sbjct: 228 VESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 69/258 (26%), Positives = 90/258 (34%), Gaps = 92/258 (35%)
Query: 4 LLGPPCSGKTTLL---LALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQH----D 56
LLGP +GKTTLL L L +K +G G +VPQR H D
Sbjct: 11 LLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR-------HEFAWD 63
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
I +V T+ S R +G RR A D A
Sbjct: 64 FPI---SVAHTV-MSGRTGHIG--------WLRRPCVA--------DFAAVRDA------ 97
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFMDEI 171
L+ +GL D VG+ +SGGQ++RV +V ALA L +DE
Sbjct: 98 -------LRRVGLTELADRPVGE-----LSGGQRQRV-----LVARALATRPSVLLLDEP 140
Query: 172 STGLDSSTTFQIV----------NSIRQNIH-------------ILNGTAVIS-----LL 203
TGLD T + +I H +LNG + L
Sbjct: 141 FTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQ 200
Query: 204 QPAP--ETYDLFDDIILL 219
PAP T+ + D LL
Sbjct: 201 DPAPWMTTFGVSDSSPLL 218
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 54/204 (26%), Positives = 87/204 (42%), Gaps = 32/204 (15%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-------RKTGGYITGNITISGYPKKQ 758
LN +S + G TAL+G +G+GK+T+ ++ G + IT+ G
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS------KITVDGITLTA 76
Query: 759 ETFTRIS---GYCEQNDIHSPFV--TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE 813
+T I G QN + FV TV + + + R P E K+ + +++ V
Sbjct: 77 KTVWDIREKVGIVFQNP-DNQFVGATVGDDVAFGLENRAVPR--PEMIKI-VRDVLADVG 132
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
+ S + LS Q++R+ IA L P II +DE TS LD +++ +R
Sbjct: 133 MLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187
Query: 874 N-TVDTGRTVVCTIHQPSIDIFES 896
TV+ H DI E+
Sbjct: 188 KLKKKNNLTVISITH----DIDEA 207
|
Length = 282 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 66/241 (27%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHI- 59
M LLGP GKTT+L +AG L+ G++ +G E V R+ I Q D+ +
Sbjct: 34 MVTLLGPSGCGKTTVLRLVAG-LEKPT--EGQIFIDG----EDVTHRS---IQQRDICMV 83
Query: 60 -------GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATE 112
M++ E + + + GV E +R KEA
Sbjct: 84 FQSYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA------------------ 120
Query: 113 GQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV-GPALALFMDEI 171
LE+ D D V ISGGQ++RV ++ P + LF DE
Sbjct: 121 ----------------LELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLF-DEP 163
Query: 172 STGLDSSTTFQIVNSIRQNIHILNGTAVISLL---QPAPETYDLFDDIILLSDAQIVYQG 228
+ LD++ + S+R+ I L I+ L E + + D +I+++ +I+ G
Sbjct: 164 LSNLDAN----LRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219
Query: 229 P 229
Sbjct: 220 S 220
|
Length = 351 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 54/248 (21%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF---VPQRTAAYISQHDVH 58
T ++G SGK+TL L G ++ SG + NG + + ++ Y+ Q + +
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQ-EPY 558
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
I ++ E L A+ D + A IK D I+ TE E
Sbjct: 559 IFSGSILENLLLGAK---ENVSQDEIWAACEI---AEIKDD--IENMPLGYQTELSEEGS 610
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
ISGGQK+R+ ++ + L +DE ++ LD+
Sbjct: 611 -------------------------SISGGQKQRIALARALLTDSKVLILDESTSNLDTI 645
Query: 179 TTFQIVNSIRQNIHILNGTAVISL---LQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
T +IVN N+ L +I + L A ++ D II+L +I+ QG + +LD
Sbjct: 646 TEKKIVN----NLLNLQDKTIIFVAHRLSVAKQS----DKIIVLDHGKIIEQGSHDELLD 697
Query: 236 ---FFESM 240
F+ S+
Sbjct: 698 RNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 32/161 (19%)
Query: 718 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT--GNITISGYPKKQETFTRISGYC 768
+TA +G SG GK+T++ D++ G + G +T G + E RI G
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRI-GMV 96
Query: 769 EQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV----- 822
Q +PF ++Y+++ Y ++ M ELVE LRQ+ +
Sbjct: 97 FQKP--NPFPKSIYDNIAYG------ARINGYKGDM-----DELVE-RSLRQAALWDEVK 142
Query: 823 GLPGESGLSTE--QRKRLTIAVELVANPSIIFMDEPTSGLD 861
+SGLS Q++RL IA + P +I MDEP S LD
Sbjct: 143 DKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 23/164 (14%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETF 761
+LN +S + R G + G SG GK+TL+ ++A +G + IS E +
Sbjct: 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP--EIY 79
Query: 762 TRISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIMEL-VELNPL 817
+ YC Q +P + TVY++L++ +R +F++++ + L
Sbjct: 80 RQQVSYCAQ----TPTLFGDTVYDNLIFPWQIR----NQQPDPAIFLDDLERFALPDTIL 131
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
+++ + LS +++R+++ L P ++ +DE TS LD
Sbjct: 132 TKNI------AELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.004
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 23/95 (24%)
Query: 145 ISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAV 199
+SGG+++RV ++ ALA L +DE ++ LD + +++ +R+ T V
Sbjct: 98 LSGGERQRV-----LLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV 152
Query: 200 ISLLQPAPETYDL------FDDIILLSDAQIVYQG 228
+ L +DL D +ILL D +IV QG
Sbjct: 153 MVL-------HDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 53/237 (22%), Positives = 93/237 (39%), Gaps = 46/237 (19%)
Query: 2 TLLLGPPCSGKTTLLLALAG--KLD-SKLKFSGRVTYNG-HGMDEFVPQRTAAYISQHDV 57
T + G SGKTTL+ +AG + D ++ +GR ++ G+ +R Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
++VR L RY M +R E
Sbjct: 86 LFPHLSVRGNL-----------RYGM-----KR--------------------ARPSERR 109
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
+ + +++LG+ L G +SGG+K+RV G ++ L MDE LD
Sbjct: 110 ISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
Query: 178 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234
++I+ + + +H G ++ + E L D +++L D ++ GP V
Sbjct: 165 PRKYEILPYL-ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 61/240 (25%), Positives = 98/240 (40%), Gaps = 56/240 (23%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDVHIG 60
++GP SGK+TL L G SG V +G + ++ + R Y+ Q DV +
Sbjct: 367 IIGPSGSGKSTLARLLVG---IWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQ-DVELF 422
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
+ T+ E +A R+ + D + ++AA L
Sbjct: 423 DGTIAENIA----------RFG---------------EEADPEKVIEAA--------RLA 449
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSST 179
+ +L L DT +G+ +SGGQ++R+ + G P L + +DE ++ LDS
Sbjct: 450 GVHELILRLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFL-VVLDEPNSNLDSEG 507
Query: 180 TFQIVNSIRQNIHILNGTAVI-----SLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234
+ +I GT V+ S L D I++L D +I GPRE VL
Sbjct: 508 EAALAAAILA-AKARGGTVVVIAHRPSALASV-------DKILVLQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 53/199 (26%), Positives = 79/199 (39%), Gaps = 24/199 (12%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-----GNITISGY 754
+L +L VS + G L G SG+GK+TL+ L G I + +
Sbjct: 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82
Query: 755 PKKQ--ETFTRISGYCEQNDIHSPFVT----VYESLLYSAWLRLPPEVDSETQKMFIEEI 808
++ E GY Q P V+ V E LL P EV
Sbjct: 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV---PREVARAKAADL---- 135
Query: 809 MELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 868
L LN L + L L + S +++R+ IA + + I+ +DEPT+ LDA A+V
Sbjct: 136 --LTRLN-LPERLWSLA-PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191
Query: 869 MRTVRNTVDTGRTVVCTIH 887
+ +R G +V H
Sbjct: 192 VELIREAKARGAALVGIFH 210
|
Length = 235 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1247 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.98 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.98 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.98 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.98 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.98 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.98 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.98 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.98 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.98 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.98 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.98 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.98 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.98 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.98 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.98 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.98 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.98 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.98 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.98 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.98 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.98 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.98 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.98 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.98 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.98 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.98 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.98 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.98 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.98 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.98 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.98 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.98 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.98 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.98 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.98 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.98 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.98 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.98 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.98 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.98 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.98 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.98 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.98 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.98 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.97 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.97 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.97 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.97 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.97 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.97 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.97 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.97 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.97 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.97 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.97 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.97 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.97 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.97 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.97 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.97 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.97 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.97 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.97 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.97 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.97 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.97 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.97 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.97 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.97 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.97 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.97 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.97 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.97 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.97 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.97 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.97 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.97 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.97 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.97 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.97 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.97 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.97 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.97 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.97 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.97 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.97 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.97 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.97 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.97 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.97 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.97 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.97 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.97 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.97 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.97 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.97 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.97 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.97 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.97 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.97 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.97 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.97 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.97 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.97 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.97 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.97 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.97 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.97 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.97 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.97 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.97 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.97 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.97 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.97 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.97 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.97 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.97 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.97 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.97 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.97 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.97 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.97 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.97 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.97 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.97 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.97 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.97 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.97 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.97 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.97 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.97 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.97 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.97 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.97 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.97 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.97 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.97 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.97 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.97 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.97 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.97 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.97 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.97 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.97 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.97 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.97 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.97 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.97 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.97 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.97 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.97 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.97 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.97 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.97 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.97 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.97 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.97 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.97 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.97 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.97 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.97 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.97 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.97 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-193 Score=1751.37 Aligned_cols=1182 Identities=53% Similarity=0.905 Sum_probs=1075.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1247)
|+.++||+||||||||++|+|.++.....+|+|++||++.++...++.++|++|+|.|++.+||||+|.|+++|++++.|
T Consensus 143 m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r 222 (1391)
T KOG0065|consen 143 MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSR 222 (1391)
T ss_pred eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccc
Confidence 58899999999999999999998876566889999999998887788999999999999999999999999999999888
Q ss_pred cchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHHh
Q 000867 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1247)
++ +..|++++. ..+|.+++++||.+|+||.||++.+|++||||||||++|++++
T Consensus 223 ~~---~~~R~e~~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v 276 (1391)
T KOG0065|consen 223 YD---EVSRREKLA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLV 276 (1391)
T ss_pred cc---cccHHHHHH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeee
Confidence 76 333333321 2578899999999999999999999999999999999999999
Q ss_pred cCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHHHHHhC
Q 000867 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240 (1247)
Q Consensus 161 ~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~~f~~~ 240 (1247)
++++++++||+|+|||+.|+.++++.++++++..+.+.++.++|++++++++||+|++|.+|+++|+||.+++++||+++
T Consensus 277 ~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~ 356 (1391)
T KOG0065|consen 277 GPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDM 356 (1391)
T ss_pred cCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhc
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHhhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhhhHHHhhcCCcccCCCCCcccccccccc
Q 000867 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELRTPFDKCKSHPAALTTKMYGV 320 (1247)
Q Consensus 241 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1247)
||.||++++++||+++++++.++.++|.+...+....+..|+.+.|.+++.+.++..+++.+.+..+.++.....+.|..
T Consensus 357 Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v 436 (1391)
T KOG0065|consen 357 GFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSV 436 (1391)
T ss_pred CccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceec
Confidence 99999999999999999998888888888888887778899999999999999999999998888888888888899999
Q ss_pred cHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccceehHHHHHHHHHHHhhHHHHHHH
Q 000867 321 GKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMT 400 (1247)
Q Consensus 321 ~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~lf~~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~ 400 (1247)
+.+.|++.+..|.+.+++||..++.+...+..+++++.|++|++.++ ....+...+.|++||++++.++++++++..+
T Consensus 437 ~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~ 514 (1391)
T KOG0065|consen 437 PYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALT 514 (1391)
T ss_pred cHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999884 4445567789999999999999999999999
Q ss_pred hhcchhhHHhhccCCcchhhHHHHHHHHHhhHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000867 401 IAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480 (1247)
Q Consensus 401 ~~~~~v~~~~r~~~~y~~~~y~la~~l~~~p~~~~~~~~~~~i~Y~l~gl~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~ 480 (1247)
+..+|+++|||+..+|++|++.++.+++++|++++.+++|.+|+||++|+.+++++||.+|+..++.+++++++|+++++
T Consensus 515 ~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~ 594 (1391)
T KOG0065|consen 515 FQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIAS 594 (1391)
T ss_pred HhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhccccccCCCccccchhhhhhCHHHHHHHHHHHhhcCCCccccccC------------C
Q 000867 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSWRKFTS------------N 548 (1247)
Q Consensus 481 ~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~~ef~~~~~~~~~~------------~ 548 (1247)
+++++.+|+.++++.++++.+++||+++..+||.||+|++|++|+.|++++++.|||+++.+.|.+. .
T Consensus 595 l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~ 674 (1391)
T KOG0065|consen 595 LSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKV 674 (1391)
T ss_pred hcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998822 1
Q ss_pred ---CCccchHHHhhhcCcc-----cCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeecCCcccccCCcCCC
Q 000867 549 ---SNETLGVQVLKSRGFF-----PHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEKPRAVISDESESNDLGNRIGG 620 (1247)
Q Consensus 549 ---~~~~~g~~~l~~~~~~-----~~~~~~w~~~~~li~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1247)
...+.|.+++...++. +...|+|+++++++|+.++|.+++.+++.+++.....+..........+.....
T Consensus 675 c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~-- 752 (1391)
T KOG0065|consen 675 CAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKS-- 752 (1391)
T ss_pred chhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchh--
Confidence 1345688888877776 777899999999999999999999999999998776666544322111100000
Q ss_pred CcccccCCCCCCCCCCCCcccccccchhhhhhhhccccccccCcCCCCCccCCCCcEEEEEeEEEEEecCchhhhccccc
Q 000867 621 TAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILE 700 (1247)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 700 (1247)
.. . ... .+.........+.++..|..+..++++||.|-+++|-+.+.++
T Consensus 753 ------~~-------~--~~~-------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG--- 801 (1391)
T KOG0065|consen 753 ------AG-------S--SSE-------------IEKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG--- 801 (1391)
T ss_pred ------cc-------c--ccc-------------ccccccccccccccccCCCccccccccceEEEEeCCccccccc---
Confidence 00 0 000 0000000011234455677778888999988888887665443
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCcCH
Q 000867 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780 (1247)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv 780 (1247)
+++++|+|||+.++||-++||||+||||||||||+|+||...|.++|+|.|||.|.++..|+|.+|||.|+|.|.|.+||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 67889999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-cEEEEeCCCCC
Q 000867 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANP-SIIFMDEPTSG 859 (1247)
Q Consensus 781 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p-~il~lDEptsg 859 (1247)
||.|.|+|.||+|.+.+.+++.+.|+++++.|+|.+++|.+||.+| +|||.+||||++||++|+.|| .||||||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 9999999999999999999999999999999999999999999999 899999999999999999999 89999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhcC---------------------------CCCcccCCCCCC
Q 000867 860 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEG---------------------------IPGVENIKDGYN 912 (1247)
Q Consensus 860 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~---------------------------~~~~~~~~~~~n 912 (1247)
||+.++..|++++|+++++|+||+||+||||.++|+.||+. ..+..+|++..|
T Consensus 961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~N 1040 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDEN 1040 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCC
Confidence 99999999999999999999999999999999999999981 012224666669
Q ss_pred CCcchhhhccchhhhhhhhhHHHHHhcCHHHHHHHHHHHHhcCCCCC-CCCCCCCCCCCCcHHHHHHHHHHHHhHHhhcC
Q 000867 913 PATWMLEVTAKSQELTLEIDFTDIYKGSELYRRNKALIEELSRPAPG-SKDLYFPTHYTQSFFMQCVACLWKQHWSYWRN 991 (1247)
Q Consensus 913 pad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~ 991 (1247)
||||++|+++...+...+.||++.|++|++++++++.+++++.++++ ..+...+++|++|+|.|++.++||+++.+||+
T Consensus 1041 PA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRs 1120 (1391)
T KOG0065|consen 1041 PAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRS 1120 (1391)
T ss_pred hHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCC
Confidence 99999999998877777889999999999999999999999998887 66677788899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhHHHHhhhcCCCCChH
Q 000867 992 PPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFCREKGAGMYSAM 1071 (1247)
Q Consensus 992 ~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~~rE~~~~~Y~~~ 1071 (1247)
|.|+++|++..++.||++|++||++++ +.++++|.+|++|+++++.+..+.....+.+..||.+++||+++|+||+.
T Consensus 1121 p~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~ 1197 (1391)
T KOG0065|consen 1121 PDYLMARFALTIVAGLFIGFTFWKVGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWT 1197 (1391)
T ss_pred cHHHHHHHHHHHHHHHhheeeeeecCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHH
Confidence 999999999999999999999999995 57999999999999999988877666767778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 000867 1072 PYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLW 1151 (1247)
Q Consensus 1072 ~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 1151 (1247)
+|.+|++++|+|+.++++++|.+++|+|+||..++.+|++|++.+++..++.+.+|+|+.+++||.++|+++.+++++++
T Consensus 1198 ~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~ 1277 (1391)
T KOG0065|consen 1198 PFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFW 1277 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCccCCCCccchhhhhhhhchHHHHHHHHHHHhhCCCccccc----------CCCcHHHHHHhhcC----CCccch
Q 000867 1152 NVFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVEDKME----------SGETVKQFVRSYFD----FKHDFL 1217 (1247)
Q Consensus 1152 ~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~n~f~~~~~~~~----------~~~~~~~~~~~~~~----~~~~~~ 1217 (1247)
.+|||+++|++.||.||+|+||+||+.|..++++..++++.+..|. +|.++++|+.+++| +.++..
T Consensus 1278 ~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~ 1357 (1391)
T KOG0065|consen 1278 NLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPL 1357 (1391)
T ss_pred HHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCc
Confidence 9999999999999999999999999999999999999999998884 34489999999999 777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000867 1218 GVVAVVVAAFAVLFGVLFAVGIKRFNFQNR 1247 (1247)
Q Consensus 1218 ~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1247 (1247)
....++..+|.+++..++.+.++|.++++|
T Consensus 1358 a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1358 ATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred ceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 777788888999999999999999999876
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-186 Score=1823.92 Aligned_cols=1243 Identities=60% Similarity=1.061 Sum_probs=1058.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1247)
+++|+||||||||||||+|+|+++|+...+|+|.+||+++++...++.++||+|+|.+++++||+||+.|++++++.+.+
T Consensus 193 ~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~ 272 (1470)
T PLN03140 193 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTR 272 (1470)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCc
Confidence 58999999999999999999999886567999999999886655567899999999999999999999999998876555
Q ss_pred cchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHHh
Q 000867 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1247)
++...+..+++++....++.+++.+++++..++.+.+..++.+++.+||++++||.||++.+++|||||||||+||++|+
T Consensus 273 ~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~ 352 (1470)
T PLN03140 273 YDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIV 352 (1470)
T ss_pred ccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhc
Confidence 54444444555554455555555555555555555566789999999999999999999999999999999999999999
Q ss_pred cCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHHHHHhC
Q 000867 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240 (1247)
Q Consensus 161 ~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~~f~~~ 240 (1247)
++|+++||||||+|||+.++.++++.|+++++..+.++|+++||+.++++++||+|++|++|+++|+|+.+++.+||+++
T Consensus 353 ~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~l 432 (1470)
T PLN03140 353 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESC 432 (1470)
T ss_pred CCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHc
Confidence 99999999999999999999999999999877656788888888899999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHhhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhhhHHHhhcCCcccCCCCCcccccccccc
Q 000867 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELRTPFDKCKSHPAALTTKMYGV 320 (1247)
Q Consensus 241 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1247)
||+||++.|++||++++.+..++.++|.....|.+..+.+++.+.|+++..+++..++++.+.+....++.....+.|..
T Consensus 433 Gf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 512 (1470)
T PLN03140 433 GFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSV 512 (1470)
T ss_pred CCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcC
Confidence 99999999999999999988766566655555655678899999999988777766665544433333333334456888
Q ss_pred cHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccceehHHHHHHHHHHHhhHHHHHHH
Q 000867 321 GKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMSDISMT 400 (1247)
Q Consensus 321 ~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~lf~~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~ 400 (1247)
+.+.|++.+++|++..++||+..+..++.+.+++++++|++|++.+.+.....++..+.|++||++++.++++++.+..+
T Consensus 513 s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~ 592 (1470)
T PLN03140 513 PKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALM 592 (1470)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999876544444556778999999999899999999999
Q ss_pred hhcchhhHHhhccCCcchhhHHHHHHHHHhhHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000867 401 IAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIAA 480 (1247)
Q Consensus 401 ~~~~~v~~~~r~~~~y~~~~y~la~~l~~~p~~~~~~~~~~~i~Y~l~gl~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~ 480 (1247)
+.++|+|+|||+.++|++++|++++++.++|+.++.+++|++++|||+||++++++||.++++.++..++++++++++++
T Consensus 593 ~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a 672 (1470)
T PLN03140 593 IQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS 672 (1470)
T ss_pred HhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhccccccCCCccccchhhhhhCHHHHHHHHHHHhhcCCCccccc-cCCCCccchHHHhh
Q 000867 481 AGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSWRKF-TSNSNETLGVQVLK 559 (1247)
Q Consensus 481 ~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~~ef~~~~~~~~-~~~~~~~~g~~~l~ 559 (1247)
+++++.+|+.+++++++++++|+||+++.++||.||+|++|+||+.|++++++.|||.+..+.+. +.....+.|.++|.
T Consensus 673 ~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~ 752 (1470)
T PLN03140 673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLN 752 (1470)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988766432 22334567999999
Q ss_pred hcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeecCCcccccCCcCCCCcccccCCCCCCCCCCCCc
Q 000867 560 SRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEKPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSES 639 (1247)
Q Consensus 560 ~~~~~~~~~~~w~~~~~li~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1247)
.+++...+.|+|.+++++++++++|.+++++++++.+.......+................-.. .... .... ....
T Consensus 753 ~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~-~~~~ 828 (1470)
T PLN03140 753 IFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRS--LSSA-DGNN-TREV 828 (1470)
T ss_pred hcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccc--cccc-cccc-cccc
Confidence 9999988889999999999999999999999999987554443332111000000000000000 0000 0000 0000
Q ss_pred ccccccchhh-hhhhhccccccccCcCCCCCccCCCCcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeE
Q 000867 640 EDITVKDSFS-QLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVL 718 (1247)
Q Consensus 640 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~ 718 (1247)
+......... ................+.++..|..|..++|+|++|+++.+.+.+..+...+++.+|+|||++++|||+
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel 908 (1470)
T PLN03140 829 AIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVL 908 (1470)
T ss_pred cccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeE
Confidence 0000000000 000000000000011233445677788999999999998776543333334556899999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCH
Q 000867 719 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDS 798 (1247)
Q Consensus 719 ~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 798 (1247)
+|||||||||||||||+|+|+.+++..+|+|.+||.+.....+++.+|||+|+|.+++.+||+|+|.|++.+|.+...+.
T Consensus 909 ~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~ 988 (1470)
T PLN03140 909 TALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSK 988 (1470)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCH
Confidence 99999999999999999999987667889999999887655566789999999999999999999999998887766666
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 000867 799 ETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878 (1247)
Q Consensus 799 ~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~ 878 (1247)
++++++++++++.+||.+++|+.+|.++.++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++
T Consensus 989 ~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~ 1068 (1470)
T PLN03140 989 EEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1068 (1470)
T ss_pred HHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 66777899999999999999999998888899999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEeccCChHHHHhhhcC----------------------------CCCcccCCCCCCCCcchhhhccchhhhhhh
Q 000867 879 GRTVVCTIHQPSIDIFESFDEG----------------------------IPGVENIKDGYNPATWMLEVTAKSQELTLE 930 (1247)
Q Consensus 879 g~tvi~~~H~~~~~~~~~fd~~----------------------------~~~~~~~~~~~npad~~l~~~~~~~~~~~~ 930 (1247)
|+|||+++|||+.++++.||+. +.|.+.||+++|||||++|+++.+.+....
T Consensus 1069 g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~ 1148 (1470)
T PLN03140 1069 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLG 1148 (1470)
T ss_pred CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhccccccccc
Confidence 9999999999999999999981 023345899999999999998866554445
Q ss_pred hhHHHHHhcCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhHHhhcChhHHHHHHHHHHHHHHHHH
Q 000867 931 IDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNPPYTAVRFLFTTVIALTFG 1010 (1247)
Q Consensus 931 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g 1010 (1247)
.||++.|++|+.++++++..++++.+.+...+...+..|+.++|+|++.|++|+++++||||.++++|+++++++|+++|
T Consensus 1149 ~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G 1228 (1470)
T PLN03140 1149 IDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVG 1228 (1470)
T ss_pred chHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence 68999999999999888777777665544444444567899999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHH
Q 000867 1011 TMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSS 1090 (1247)
Q Consensus 1011 ~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~ 1090 (1247)
++||+++++..+.+++++++|++|++++++++.++.+++|.+..||++|+|||++|+|++.+|++|++++|+|+.++.++
T Consensus 1229 ~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~ 1308 (1470)
T PLN03140 1229 TIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTT 1308 (1470)
T ss_pred HHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998776778999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred hHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCCccCCCCccchhhh
Q 000867 1091 VYGIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRW 1170 (1247)
Q Consensus 1091 ~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w 1170 (1247)
+|++|+|||+||++++++||+|+++++++.++++++|+++++++|+.++|..+++++++++++||||++|+++||+||+|
T Consensus 1309 if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W 1388 (1470)
T PLN03140 1309 YYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVW 1388 (1470)
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchHHHHHHHHHHHhhCCCcccccC-----CCcHHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000867 1171 YYWANPVAWTMYGLVASQFGDVEDKMES-----GETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLFGVLFAVGIKRFNFQ 1245 (1247)
Q Consensus 1171 ~~~~sp~~y~~~~l~~n~f~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~ 1245 (1247)
+||+||++|+++|++.|||++.+..|++ ++++.+|+++.|||+++++|++++++++|+++|+++++++++++|||
T Consensus 1389 ~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q 1468 (1470)
T PLN03140 1389 YYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQ 1468 (1470)
T ss_pred HHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999998776542 24678999999999999999999999999999999999999999999
Q ss_pred cC
Q 000867 1246 NR 1247 (1247)
Q Consensus 1246 ~r 1247 (1247)
||
T Consensus 1469 ~r 1470 (1470)
T PLN03140 1469 TR 1470 (1470)
T ss_pred cC
Confidence 98
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-164 Score=1620.85 Aligned_cols=1181 Identities=31% Similarity=0.526 Sum_probs=955.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCC-CceeeEEEECCccCCCC--cccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSK-LKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~-~~~~G~v~~~g~~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
+++|+||||||||||||+|+|+.++. ...+|+|.+||+++++. ..++.++||+|+|.+++.+||+||+.|+++++..
T Consensus 89 ~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 168 (1394)
T TIGR00956 89 LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTP 168 (1394)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCC
Confidence 58999999999999999999997421 12499999999887532 2345699999999999999999999999876532
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
..+.+ ...+. +..+..++.+++.+||+++.||.||++.+++|||||||||+||+
T Consensus 169 ~~~~~---~~~~~-----------------------~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~ 222 (1394)
T TIGR00956 169 QNRPD---GVSRE-----------------------EYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAE 222 (1394)
T ss_pred CCCCC---CCCHH-----------------------HHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHH
Confidence 11100 00000 00112346689999999999999999999999999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHHHH
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFF 237 (1247)
Q Consensus 158 al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~~f 237 (1247)
+|+.+|++++|||||+|||+.++.++++.|+++++..+.++|+++||++++++++||+|++|++|+++|+|+++++.+||
T Consensus 223 aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF 302 (1394)
T TIGR00956 223 ASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYF 302 (1394)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHH
Confidence 99999999999999999999999999999999887556777888888889999999999999999999999999999999
Q ss_pred HhCCCCCCCCCChhhHHhhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhhhHHHhhcCCcccC-----------
Q 000867 238 ESMGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELRTPFDKC----------- 306 (1247)
Q Consensus 238 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 306 (1247)
+++||+||++.|++||+.++.+.++.. .+...+ .....+.+++.+.|++++.+++..++.+...+..
T Consensus 303 ~~lG~~~p~~~n~aDfl~~~~~~~~~~-~~~~~e-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1394)
T TIGR00956 303 EKMGFKCPDRQTTADFLTSLTSPAERQ-IKPGYE-KKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRE 380 (1394)
T ss_pred HHcCCCCCCCCChHHHHHhccChhhhh-cccccc-ccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHH
Confidence 999999999999999999998765321 111111 1112467889999988876655444432211000
Q ss_pred ----CCCCcccccccccccHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccceehHH
Q 000867 307 ----KSHPAALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGAT 382 (1247)
Q Consensus 307 ----~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~lf~~~~~~~~~~~~~~~~~g~~ 382 (1247)
+..........+..+.++|+..+.+|.++..+||+..++.++++.+++++++|++|++.+.+. .+...+.|++
T Consensus 381 ~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~---~~~~~r~g~l 457 (1394)
T TIGR00956 381 SHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT---SDFYSRGGAL 457 (1394)
T ss_pred HHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---hhHHHHHHHH
Confidence 000011123356788999999999999999999999999999999999999999999987543 2345578999
Q ss_pred HHHHHHHHHhhHHHHHHHhhcchhhHHhhccCCcchhhHHHHHHHHHhhHHHHHHHHHHHHhhhccccccchHHHHHHHH
Q 000867 383 FFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFL 462 (1247)
Q Consensus 383 f~~i~~~~~~~~~~~~~~~~~~~v~~~~r~~~~y~~~~y~la~~l~~~p~~~~~~~~~~~i~Y~l~gl~~~~~~~~~~~l 462 (1247)
|+++++..+.++..+...+.++++|+|||..++|++++|++++.+.++|+.++.+++|++++|||+||++++++|+.+++
T Consensus 458 f~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l 537 (1394)
T TIGR00956 458 FFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLL 537 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHH
Confidence 99999988888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccccccCCCccccchhhhhhCHHHHHHHHHHHhhcCCCcc
Q 000867 463 LLLLVNQMASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSW 542 (1247)
Q Consensus 463 ~~~l~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~~ef~~~~~ 542 (1247)
+.++...++++++.++++++++..+|+.+++++++++++|+||+++.++||.||+|++|+||+.|++++++.|||.+..+
T Consensus 538 ~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~ 617 (1394)
T TIGR00956 538 ILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRF 617 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccc---C-----------CC----------CccchHHHhhh-cCcccCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 000867 543 RKFT---S-----------NS----------NETLGVQVLKS-RGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQ 597 (1247)
Q Consensus 543 ~~~~---~-----------~~----------~~~~g~~~l~~-~~~~~~~~~~w~~~~~li~~~~~~~i~~~~~l~~~~~ 597 (1247)
.|.. . .. ..+.|.++|.. +++ ...|.|.+++++++++++|.+++.+++.+.+.
T Consensus 618 ~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~--~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 618 ECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQY--YNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred cccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCc--ccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7741 0 00 12468888884 444 44578999999999999999999999998875
Q ss_pred CCCCcceeecCCcccccCCcCCCCcccccCCCCCCCCCCCCcccccccchhhhhhhhccccccccCcCCCCCccCCCCcE
Q 000867 598 FEKPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHS 677 (1247)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1247)
................. ........+......++.... ....... ....... ......+.....
T Consensus 696 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~e~~~~~-~~~~~~~----~~~~~~~-~~~~~~~~~~~~ 759 (1394)
T TIGR00956 696 AKQKGEILVFRRGSLKR----------AKKAGETSASNKNDIEAGEVL-GSTDLTD----ESDDVND-EKDMEKESGEDI 759 (1394)
T ss_pred cCCCCceEeeccccccc----------hhhcccccccccccccccccC-CCCcccc----ccccccc-cccccccCCCce
Confidence 43332221111100000 000000000000000100000 0000000 0000000 000000011235
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eEEEEEEEcCccC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPK 756 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~i~g~~~ 756 (1247)
++|+|++|+++.+ ++++.+|+|||++++|||++||+||||||||||||+|+|+.+.+ +.+|+|.+||.+.
T Consensus 760 l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~ 830 (1394)
T TIGR00956 760 FHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPL 830 (1394)
T ss_pred EEEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEEC
Confidence 8999999987422 12457999999999999999999999999999999999987644 4569999999987
Q ss_pred CcccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000867 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1247)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~ 836 (1247)
.. .+++.+|||+|+|.+++.+||+|++.|++.+|.+...+.++++++++++++.+||.++.|+.+|.++ .+|||||||
T Consensus 831 ~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrq 908 (1394)
T TIGR00956 831 DS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRK 908 (1394)
T ss_pred Ch-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhh
Confidence 53 4677899999999999999999999999988877666666777889999999999999999998654 389999999
Q ss_pred HHHHHHHHhhCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhcC---------------
Q 000867 837 RLTIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEG--------------- 900 (1247)
Q Consensus 837 r~~ia~~l~~~p~-il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~--------------- 900 (1247)
|++||+||+.+|+ ||||||||||||+.++..+++.|++++++|+|||+++|||+..+++.||+.
T Consensus 909 Rl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 909 RLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 9999999999997 999999999999999999999999998889999999999999999999981
Q ss_pred ------------CCCcccCCCCCCCCcchhhhccchhhhhhhhhHHHHHhcCHHHHHHHHHHHHhcCCCCCC---CCCCC
Q 000867 901 ------------IPGVENIKDGYNPATWMLEVTAKSQELTLEIDFTDIYKGSELYRRNKALIEELSRPAPGS---KDLYF 965 (1247)
Q Consensus 901 ------------~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~ 965 (1247)
..|..+||+++|||||++|+++...+.....++.+.|+.|+.+++..+.++....+.... .+...
T Consensus 989 ~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1394)
T TIGR00956 989 GENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDA 1068 (1394)
T ss_pred ccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCcccccccc
Confidence 012246899999999999999865443334589999999998877665554443321111 11112
Q ss_pred CCCCCCcHHHHHHHHHHHHhHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHhh
Q 000867 966 PTHYTQSFFMQCVACLWKQHWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYC 1045 (1247)
Q Consensus 966 ~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~ 1045 (1247)
..+++.|+|+|+++|++|+++++||||.++++|+++++++|+++|++||+++++ .+++++++|++|+++++.++..
T Consensus 1069 ~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~---~~~i~~~~g~~f~~~~~~~~~~- 1144 (1394)
T TIGR00956 1069 LSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS---LQGLQNQMFAVFMATVLFNPLI- 1144 (1394)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHHHHHHHHHH-
Confidence 246889999999999999999999999999999999999999999999999874 6789999999999888777653
Q ss_pred hhhhhhHHhhhHHH-HhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhccccccccHHH-------HHHHHHHHH
Q 000867 1046 SSVQPVVAVERAVF-CREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAK-------FFWYLFFMF 1117 (1247)
Q Consensus 1046 ~~~~~~~~~er~~~-~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~-------f~~f~~~~~ 1117 (1247)
..++|.|+.||.+| +||+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+||+.++.. |++|+++++
T Consensus 1145 ~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~ 1224 (1394)
T TIGR00956 1145 QQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLST 1224 (1394)
T ss_pred HHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHH
Confidence 45567888888885 9999999999999999999999999999999999999999999988766 999999999
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCCccCCCCccchhhhhhhhchHHHHHHHHHHHhhCCCccccc
Q 000867 1118 FSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVEDKME 1197 (1247)
Q Consensus 1118 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~n~f~~~~~~~~ 1197 (1247)
+..++++++|+++++++|+.++|+.+++++++++++||||++++++||.||+|++|+||++|+++|++.|||++.+..|.
T Consensus 1225 ~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~ 1304 (1394)
T TIGR00956 1225 MFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCK 1304 (1394)
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887774
Q ss_pred C----------CCcHHHH-------------------------------HHhhcCCCccchhHHHHHHHHHHHHHHHHHH
Q 000867 1198 S----------GETVKQF-------------------------------VRSYFDFKHDFLGVVAVVVAAFAVLFGVLFA 1236 (1247)
Q Consensus 1198 ~----------~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~il~~~~~~f~~~~~ 1236 (1247)
. |.+|++| ++..+|++.++.|+|++++++|++++ ++++
T Consensus 1305 ~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~ 1383 (1394)
T TIGR00956 1305 VKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIAT 1383 (1394)
T ss_pred ccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHH
Confidence 2 2233322 33467888899999999999999988 7888
Q ss_pred HHHHhccccc
Q 000867 1237 VGIKRFNFQN 1246 (1247)
Q Consensus 1237 ~~l~~~~~~~ 1246 (1247)
+++.+....+
T Consensus 1384 ~~l~~~~r~~ 1393 (1394)
T TIGR00956 1384 VFFYWLARVP 1393 (1394)
T ss_pred HhhheEEEcC
Confidence 8888764443
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-93 Score=872.67 Aligned_cols=557 Identities=31% Similarity=0.542 Sum_probs=481.4
Q ss_pred CCcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eEEEEEEEc
Q 000867 674 EPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITIS 752 (1247)
Q Consensus 674 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~i~ 752 (1247)
.+..+.|+|++++.+.+.. ..+++|||||++++|||++|||||||||||||||+|+|+..++ ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3567999999988754321 3578999999999999999999999999999999999998764 689999999
Q ss_pred CccCCcccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 753 GYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 753 g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
|++.....+++.+|||+|||.++|++||+|+|.|+|.+|+|.+.+.++++++|+++++++||.+|+|+++|+.+.||+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999988999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhcC---------CCC
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEG---------IPG 903 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~---------~~~ 903 (1247)
||||||+||.+|++||+||||||||||||+.++.+++++|+++|++|+|||+|+|||++++|++||+. +.|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999992 122
Q ss_pred c------------ccCCCCCCCCcchhhhccch-hhhhhhhhHHHH------HhcCHHHHHHHHHHHHhcCCCCCCCCCC
Q 000867 904 V------------ENIKDGYNPATWMLEVTAKS-QELTLEIDFTDI------YKGSELYRRNKALIEELSRPAPGSKDLY 964 (1247)
Q Consensus 904 ~------------~~~~~~~npad~~l~~~~~~-~~~~~~~~~~~~------~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1247)
. .+||+++|||||++|+++.. ..... .+..+. ++..+...+... ...........
T Consensus 254 ~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-- 327 (613)
T KOG0061|consen 254 SPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTREL-EEAVRIAKLINKFSQTDNLKKTLE---ALEKSLSTSKK-- 327 (613)
T ss_pred CHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhH-HhHHHHHHHhhhccccchhhhhHH---HHhhhcccccc--
Confidence 1 14899999999999998843 11100 011111 110111111100 01100000011
Q ss_pred CCCCCCCcHHHHHHHHHHHHhHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHh
Q 000867 965 FPTHYTQSFFMQCVACLWKQHWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQY 1044 (1247)
Q Consensus 965 ~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~ 1044 (1247)
.+.....+||.|++.+++|.+++.+|||.+...|+++.+++|+++|++||+++++ ..+++++.|++|+.+.++.+..
T Consensus 328 ~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~g~~~~~~~~~~f~~ 404 (613)
T KOG0061|consen 328 VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND---AKGIQNRLGLFFFILSFMTFLS 404 (613)
T ss_pred cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHHHHHHHHHH
Confidence 1111278999999999999999999999999999999999999999999999764 4556689999999999988888
Q ss_pred hhhhhhhHHhhhHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHH
Q 000867 1045 CSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFT 1124 (1247)
Q Consensus 1045 ~~~~~~~~~~er~~~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~ 1124 (1247)
+.+.++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|++++++..++++
T Consensus 405 ~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~ 484 (613)
T KOG0061|consen 405 MFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAE 484 (613)
T ss_pred HHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 88778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCCccCCCCccchhhhhhhhchHHHHHHHHHHHhhCCCccccc-----CC
Q 000867 1125 FYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVEDKME-----SG 1199 (1247)
Q Consensus 1125 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~n~f~~~~~~~~-----~~ 1199 (1247)
++|++++++.||...|+.+++++++.|++|+||+++.++||.||+|++|+|+++|++||++.|||.+....|. +.
T Consensus 485 s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~ 564 (613)
T KOG0061|consen 485 SLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCC 564 (613)
T ss_pred HHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999997444442 11
Q ss_pred CcHHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000867 1200 ETVKQFVRSYFDFKHDFLGVVAVVVAAFAVLFGVLFAVGIKRFNFQNR 1247 (1247)
Q Consensus 1200 ~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1247 (1247)
...++.+....+++..+.|.|+.+++++.++|+++++++|++..+.+|
T Consensus 565 ~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 565 ESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 223344556789999999999999999999999999999998877664
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-90 Score=859.82 Aligned_cols=559 Identities=24% Similarity=0.381 Sum_probs=459.7
Q ss_pred CcEEEEEeEEEEEecCchh----------------hhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000867 675 PHSLTFDEVTYSVDMPKEM----------------KLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 675 ~~~~~~~~l~~~~~~~~~~----------------~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g 738 (1247)
+..++|.+++|.++..... +...+..+++.+|+|+|++++|||++||+|||||||||||++|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999998644200 000112345779999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 000867 739 RKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818 (1247)
Q Consensus 739 ~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~ 818 (1247)
+.+++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|++.++.+...+.++++++++++++.+||.++.
T Consensus 117 ~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 876544689999999986543 3456899999999999999999999998887665555666677899999999999999
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhh
Q 000867 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 898 (1247)
Q Consensus 819 ~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd 898 (1247)
|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++++|
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 99999877889999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred cCC---------CC------------cccCCCCCCCCcchhhhccchhhh---------hhhhhHHHHHhcCHHHHHHHH
Q 000867 899 EGI---------PG------------VENIKDGYNPATWMLEVTAKSQEL---------TLEIDFTDIYKGSELYRRNKA 948 (1247)
Q Consensus 899 ~~~---------~~------------~~~~~~~~npad~~l~~~~~~~~~---------~~~~~~~~~~~~s~~~~~~~~ 948 (1247)
+.+ .| .-.||+++|||||++|+++.+.+. .....+.+.|++.. .++..+
T Consensus 276 ~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 354 (659)
T PLN03211 276 SVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL-APKVKA 354 (659)
T ss_pred eEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc-cHHHHH
Confidence 821 11 015899999999999998753210 00112233443211 111111
Q ss_pred HHHHh--cC-CCC-----CCCCC-CCCCCCCCcHHHHHHHHHHHHhHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCC
Q 000867 949 LIEEL--SR-PAP-----GSKDL-YFPTHYTQSFFMQCVACLWKQHWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTK 1019 (1247)
Q Consensus 949 ~~~~~--~~-~~~-----~~~~~-~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~ 1019 (1247)
..+.. .. +.. ..+.. .....+..+||+|+.+|++|++++ |||+.+..+|+++++++|+++|++||+++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-- 431 (659)
T PLN03211 355 AIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-- 431 (659)
T ss_pred HHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 11110 00 000 00000 011235578999999999999988 89999999999999999999999999984
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhcc
Q 000867 1020 MKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAM 1099 (1247)
Q Consensus 1020 ~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~ 1099 (1247)
..+++++.|++||++++.++.++...++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||
T Consensus 432 ---~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m 508 (659)
T PLN03211 432 ---FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWM 508 (659)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEc
Confidence 35688999999999989888887778899999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCCccCCCCccchhhhhhhhchHHH
Q 000867 1100 IGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANPVAW 1179 (1247)
Q Consensus 1100 ~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y 1179 (1247)
+||++++++||+|++++++..++++++|+++++++|+..+|+.+++++++++++|+||+++ +||+||+|++|+||++|
T Consensus 509 ~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y 586 (659)
T PLN03211 509 AGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFY 586 (659)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997 79999999999999999
Q ss_pred HHHHHHHHhhCCCc-----ccccCCC----cHHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000867 1180 TMYGLVASQFGDVE-----DKMESGE----TVKQFVRSYFDFKHDFLGVVAVVVAAFAVLFGVLFAVGIKRFNF 1244 (1247)
Q Consensus 1180 ~~~~l~~n~f~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1244 (1247)
++++++.|||++.+ ..|+... ....+ ....+++....|.++++|++|+++|+++++++|++++|
T Consensus 587 ~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 587 SYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKF-VEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIKH 659 (659)
T ss_pred HHHHHHHHhcCCccccccccCCCCcccCCCCCCcc-chhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999998653 2464210 11112 22234445568999999999999999999999998876
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-90 Score=862.46 Aligned_cols=543 Identities=29% Similarity=0.470 Sum_probs=475.5
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eEEEEEEEcCccCCcccccceEEEeccCCCCCCCcCH
Q 000867 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780 (1247)
Q Consensus 702 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv 780 (1247)
++.+|+|+|++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.+...+++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 567999999999999999999999999999999999986543 3589999999987766677889999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000867 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG-ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 859 (1247)
Q Consensus 781 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~-~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsg 859 (1247)
+||+.|++.++.+...+.++++++++++++.+||.+++|+.+|+++ .++||||||||++||+||+++|++++|||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999999988777777778889999999999999999999764 578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhcCC---------CCc------------ccCCCCCCCCcchh
Q 000867 860 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEGI---------PGV------------ENIKDGYNPATWML 918 (1247)
Q Consensus 860 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~---------~~~------------~~~~~~~npad~~l 918 (1247)
||+.++..+++.|++++++|+|||+++|||+.+++++||+.. .|. -.||++.|||||++
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~ 276 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYV 276 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 999999999999999988899999999999999999999921 111 24899999999999
Q ss_pred hhccchhhhh-----hhhhHHHHHhcCHHHHHHHHHHHHhcCCCC---CCCCCCCCCCCCCcHHHHHHHHHHHHhHHhhc
Q 000867 919 EVTAKSQELT-----LEIDFTDIYKGSELYRRNKALIEELSRPAP---GSKDLYFPTHYTQSFFMQCVACLWKQHWSYWR 990 (1247)
Q Consensus 919 ~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R 990 (1247)
|+++.+.+.. ...++.+.|++|+.+++..+.......+.+ ..........+..+|+.|+..|++|++++.||
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R 356 (617)
T TIGR00955 277 QVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLR 356 (617)
T ss_pred HHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhc
Confidence 9987543211 113455667777665544333222111111 11111122457789999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhHHHHhhhcCCCCCh
Q 000867 991 NPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFCREKGAGMYSA 1070 (1247)
Q Consensus 991 ~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~~rE~~~~~Y~~ 1070 (1247)
||.++..|+++.+++|+++|++||+++++ .++++++.|++|+++.++++.++....+.++.||++|+||+.+|+|++
T Consensus 357 ~~~~~~~~~~~~i~~~li~G~~f~~~~~~---~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~ 433 (617)
T TIGR00955 357 DPLLLKVRLIQTMMTAILIGLIYLGQGLT---QKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRV 433 (617)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCH
Confidence 99999999999999999999999999864 567889999999999988888877777899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 000867 1071 MPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGL 1150 (1247)
Q Consensus 1071 ~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 1150 (1247)
++|++|++++|+|+.++.+++|.+|+|||+|+++++++||+|++++++..++++++|+++++++|+..+|..++++++.+
T Consensus 434 ~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~ 513 (617)
T TIGR00955 434 SAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIP 513 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccCCCCccchhhhhhhhchHHHHHHHHHHHhhCCCcc-cccCC------CcHHHHHHhhcCCCccchhHHHHH
Q 000867 1151 WNVFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVED-KMESG------ETVKQFVRSYFDFKHDFLGVVAVV 1223 (1247)
Q Consensus 1151 ~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~n~f~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i 1223 (1247)
+++|+||++++++||+||+|++|+||++|++++++.|||++.+. +|..+ +..++++++.||++.++.|.++++
T Consensus 514 ~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~i 593 (617)
T TIGR00955 514 FLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIG 593 (617)
T ss_pred HHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHHH
Confidence 99999999999999999999999999999999999999998764 56421 112577778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccC
Q 000867 1224 VAAFAVLFGVLFAVGIKRFNFQNR 1247 (1247)
Q Consensus 1224 l~~~~~~f~~~~~~~l~~~~~~~r 1247 (1247)
|++|.++|+++++++|++...++|
T Consensus 594 l~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 594 LVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999877776
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-88 Score=895.39 Aligned_cols=568 Identities=23% Similarity=0.358 Sum_probs=483.7
Q ss_pred CCCcEEEEEeEEEEEecCchh-------------h--h----ccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHH
Q 000867 673 FEPHSLTFDEVTYSVDMPKEM-------------K--L----QGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLM 733 (1247)
Q Consensus 673 ~~~~~~~~~~l~~~~~~~~~~-------------~--~----~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl 733 (1247)
.+...++|+|+++........ . . .+.+..++.+|+|+|+.++|||+++|+|||||||||||
T Consensus 25 ~~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLL 104 (1394)
T TIGR00956 25 PYKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLL 104 (1394)
T ss_pred CCeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHH
Confidence 345789999998776221100 0 0 01223457799999999999999999999999999999
Q ss_pred HHHhCCCCC--CeEEEEEEEcCccCCc--ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCC----CCCHHHHHHH-
Q 000867 734 DVLAGRKTG--GYITGNITISGYPKKQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP----EVDSETQKMF- 804 (1247)
Q Consensus 734 ~~l~g~~~~--~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~----~~~~~~~~~~- 804 (1247)
|+|+|+..+ .+.+|+|.+||.+... ..+++.++|++|+|.+++.+||+|++.|++.++.+. ..+.++++++
T Consensus 105 k~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 184 (1394)
T TIGR00956 105 KTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHI 184 (1394)
T ss_pred HHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Confidence 999998532 2468999999987643 234567999999999999999999999998887653 2234443333
Q ss_pred HHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Q 000867 805 IEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVV 883 (1247)
Q Consensus 805 v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi 883 (1247)
++++++.+||.+++|+.+|+...++|||||||||+||++|+.+|+|++|||||+|||+.++..+++.|++++++ |+|||
T Consensus 185 ~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvi 264 (1394)
T TIGR00956 185 ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPL 264 (1394)
T ss_pred HHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 56789999999999999999888999999999999999999999999999999999999999999999999864 89999
Q ss_pred EEeccCChHHHHhhhcC---------CCC--------c----ccCCCCCCCCcchhhhccchhhh----------hhhhh
Q 000867 884 CTIHQPSIDIFESFDEG---------IPG--------V----ENIKDGYNPATWMLEVTAKSQEL----------TLEID 932 (1247)
Q Consensus 884 ~~~H~~~~~~~~~fd~~---------~~~--------~----~~~~~~~npad~~l~~~~~~~~~----------~~~~~ 932 (1247)
+++|||+.+++++||+. ..| + -.||++.|||||++|+++.+++. ....+
T Consensus 265 i~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~ 344 (1394)
T TIGR00956 265 VAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQE 344 (1394)
T ss_pred EEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccccccccCCCCHHH
Confidence 99999999999999982 111 1 15899999999999998754211 12357
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCC---------------CCCCCCCCCCCCCCcHHHHHHHHHHHHhHHhhcChhHHHH
Q 000867 933 FTDIYKGSELYRRNKALIEELSRPA---------------PGSKDLYFPTHYTQSFFMQCVACLWKQHWSYWRNPPYTAV 997 (1247)
Q Consensus 933 ~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~ 997 (1247)
+++.|++|+.+++..+.++...... ..++.......|..|+|+|+++|++|+++++||||.+++.
T Consensus 345 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~ 424 (1394)
T TIGR00956 345 FETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLF 424 (1394)
T ss_pred HHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8999999998876655444321110 0001112234688899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhHHHHhhhcCCCCChHHHHHHH
Q 000867 998 RFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQ 1077 (1247)
Q Consensus 998 r~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~~rE~~~~~Y~~~~y~~a~ 1077 (1247)
|+++++++|+++|++||+++++ ..+++++.|++||++++.++.++.++ +.+..||++|+||+.+|+|++++|++|+
T Consensus 425 r~~~~ii~~li~G~~F~~~~~~---~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~ 500 (1394)
T TIGR00956 425 MVFGNIIMALILSSVFYNLPKN---TSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIAS 500 (1394)
T ss_pred HHHHHHHHHHHHHHhhcCCCCC---chhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHH
Confidence 9999999999999999999864 46788999999999999999887665 5566899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCC
Q 000867 1078 VMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGF 1157 (1247)
Q Consensus 1078 ~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~ 1157 (1247)
+++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..+|+.+++++++++++|+||
T Consensus 501 ~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf 580 (1394)
T TIGR00956 501 IISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGF 580 (1394)
T ss_pred HHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccchhhhhhhhchHHHHHHHHHHHhhCCCccccc----CC------------------------CcHHHHHHhh
Q 000867 1158 VIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVEDKME----SG------------------------ETVKQFVRSY 1209 (1247)
Q Consensus 1158 ~i~~~~ip~~~~w~~~~sp~~y~~~~l~~n~f~~~~~~~~----~~------------------------~~~~~~~~~~ 1209 (1247)
++|+++||+||+|++|+||++|+|+|++.|||++.+.+|. .| .++.+|+...
T Consensus 581 ~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~ 660 (1394)
T TIGR00956 581 AIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLS 660 (1394)
T ss_pred ccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhc
Confidence 9999999999999999999999999999999999888773 10 1446788878
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000867 1210 FDFKHDFLGVVAVVVAAFAVLFGVLFAVGIKRFNF 1244 (1247)
Q Consensus 1210 ~~~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1244 (1247)
||++.+|+|+|++|+++|+++|+++++++++|+++
T Consensus 661 ~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 661 FQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-87 Score=881.02 Aligned_cols=570 Identities=22% Similarity=0.348 Sum_probs=475.1
Q ss_pred CCcEEEEEeEEEEEec-------Cchh----------h-hcc---ccccccceeeceEEEEeCCeEEEEEcCCCCCHHHH
Q 000867 674 EPHSLTFDEVTYSVDM-------PKEM----------K-LQG---ILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTL 732 (1247)
Q Consensus 674 ~~~~~~~~~l~~~~~~-------~~~~----------~-~~~---~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTL 732 (1247)
+...+.|+|+++..+. |... . ..+ .++.++.+|+|+|+.++|||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 3567999999887652 1100 0 001 12235789999999999999999999999999999
Q ss_pred HHHHhCCCCCC-eEEEEEEEcCccCCcccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCC-------CCHHHH---
Q 000867 733 MDVLAGRKTGG-YITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE-------VDSETQ--- 801 (1247)
Q Consensus 733 l~~l~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~-------~~~~~~--- 801 (1247)
||+|+|+.++. ..+|+|.+||.+......++.++||+|+|.|++.+||+|+|.|++.++.+.. ...+++
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 99999986532 4689999999987554446779999999999999999999999988763211 111111
Q ss_pred ---------------------HHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000867 802 ---------------------KMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860 (1247)
Q Consensus 802 ---------------------~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgL 860 (1247)
+..++++++.+||.+++|+.+|+...++|||||||||+||++|+.+|+++||||||+||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 12357899999999999999999888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEeccCChHHHHhhhcC---------CCCc------------ccCCCCCCCCcchh
Q 000867 861 DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEG---------IPGV------------ENIKDGYNPATWML 918 (1247)
Q Consensus 861 D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~~---------~~~~------------~~~~~~~npad~~l 918 (1247)
|+.++..+++.|+++++ .|+|||+++|||+.+++++||+. ..|. -.||+++|||||++
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~ 447 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQ 447 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99999999999999976 48999999999999999999982 1111 15899999999999
Q ss_pred hhccchhh-h-----------hhhhhHHHHHhcCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhH
Q 000867 919 EVTAKSQE-L-----------TLEIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACLWKQHW 986 (1247)
Q Consensus 919 ~~~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~ 986 (1247)
|+++..+. . ....++++.|++|+.+++..+.++.........+.....+.|..+++.|++.|++|+++
T Consensus 448 ~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~ 527 (1470)
T PLN03140 448 EVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWL 527 (1470)
T ss_pred HhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHH
Confidence 99885432 1 11346888999998876654433221000000111112345889999999999999999
Q ss_pred HhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhHHHHhhhcCC
Q 000867 987 SYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFCREKGAG 1066 (1247)
Q Consensus 987 ~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~~rE~~~~ 1066 (1247)
.+||||.++..|+++.+++|+++|++||+++.+..+..+.+.+.|++||++++.++.++.++ +.++.||+||+|||.++
T Consensus 528 ~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l-~~~~~~r~vf~ker~~~ 606 (1470)
T PLN03140 528 LMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAEL-ALMIQRLPVFYKQRDLL 606 (1470)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccchhHHhhhcc
Confidence 99999999999999999999999999999986654445566778999999888887776554 77889999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 000867 1067 MYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSIL 1146 (1247)
Q Consensus 1067 ~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 1146 (1247)
+|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..+|+.++++
T Consensus 607 ~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~ 686 (1470)
T PLN03140 607 FHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGAL 686 (1470)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccCCCCccchhhhhhhhchHHHHHHHHHHHhhCCCccc---cc-CCCcHHHHHHhhcCCCcc--chhHH
Q 000867 1147 FYGLWNVFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVEDK---ME-SGETVKQFVRSYFDFKHD--FLGVV 1220 (1247)
Q Consensus 1147 ~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~n~f~~~~~~---~~-~~~~~~~~~~~~~~~~~~--~~~~~ 1220 (1247)
+++++++|+||++++++||+||+|++|+||++|+++|+++|||.+..+. |. .....|+.+++.+|++.+ |.|++
T Consensus 687 ~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~ 766 (1470)
T PLN03140 687 VLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIG 766 (1470)
T ss_pred HHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhh
Confidence 9999999999999999999999999999999999999999999776543 21 122345555578999754 56999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 000867 1221 AVVVAAFAVLFGVLFAVGIKRFNF 1244 (1247)
Q Consensus 1221 ~~il~~~~~~f~~~~~~~l~~~~~ 1244 (1247)
+++|+||+++|+++++++|++++.
T Consensus 767 ~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 767 VGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999873
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-82 Score=778.85 Aligned_cols=541 Identities=25% Similarity=0.434 Sum_probs=476.0
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eEEEEEEEcCccCCcccccceEEEeccCCCCCCCcCH
Q 000867 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780 (1247)
Q Consensus 702 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv 780 (1247)
+..+|+|+|+.++|||++.++||+||||||||++|+|..+.. ...|+|.+||++.+...-++.++|+.|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999976532 2357999999998765447889999999999999999
Q ss_pred HHHHHHHhhccCCCC----CCHHHHH-HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000867 781 YESLLYSAWLRLPPE----VDSETQK-MFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 855 (1247)
Q Consensus 781 ~e~l~~~~~~~~~~~----~~~~~~~-~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDE 855 (1247)
||+|.|+++++.+.. .++.++. +..+.+++.+||.+|+|++||++..||+||||||||++|.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999998732 2222222 25778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhcCC---------CC--------c----ccCCCCCCC
Q 000867 856 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEGI---------PG--------V----ENIKDGYNP 913 (1247)
Q Consensus 856 ptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~---------~~--------~----~~~~~~~np 913 (1247)
+|+|||+.|+.++.+.||++++. +.|+++++|||+.++|++||+.+ .| + -.||+..++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 99999999999999999999854 89999999999999999999921 11 1 158999999
Q ss_pred Ccchhhhccchhhh------------hhhhhHHHHHhcCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHHHHHHH
Q 000867 914 ATWMLEVTAKSQEL------------TLEIDFTDIYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVACL 981 (1247)
Q Consensus 914 ad~~l~~~~~~~~~------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~ 981 (1247)
|||+.++++...+. ....++++.|.+|+.+++.....+.........+.....+.|..|+|.|++.|+
T Consensus 367 ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~ 446 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACT 446 (1391)
T ss_pred HHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHH
Confidence 99999999832111 112579999999999987654433221111222333445679999999999999
Q ss_pred HHHhHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhHHHHh
Q 000867 982 WKQHWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFLGAQYCSSVQPVVAVERAVFCR 1061 (1247)
Q Consensus 982 ~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~~r 1061 (1247)
.|.++.++||..++..+.++.+++|+++|++|++.+. .+..+.+.+.|++||++++..+.++.++ +...+.|+||+|
T Consensus 447 ~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~~~~pv~~K 523 (1391)
T KOG0065|consen 447 IREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTFQRLPVFYK 523 (1391)
T ss_pred HHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHHhhcchHHH
Confidence 9999999999999999999999999999999999983 4567788999999999999999888877 556688999999
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Q 000867 1062 EKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMIGFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAA 1141 (1247)
Q Consensus 1062 E~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 1141 (1247)
||...+|+|++|.++.+++++|+.++.+++|.+|+||++||.++|++||.|+++++++..|++++++++++++|+...|+
T Consensus 524 hr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An 603 (1391)
T KOG0065|consen 524 HRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIAN 603 (1391)
T ss_pred hhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCccCCCCccchhhhhhhhchHHHHHHHHHHHhhCCCccccc-CCC--------------------
Q 000867 1142 IVSILFYGLWNVFSGFVIPRTRIPLWWRWYYWANPVAWTMYGLVASQFGDVEDKME-SGE-------------------- 1200 (1247)
Q Consensus 1142 ~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~n~f~~~~~~~~-~~~-------------------- 1200 (1247)
.++++.+....+++||+||.++||+||+|++|+||+.|++++++.|||++.+.+|. .||
T Consensus 604 ~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G 683 (1391)
T KOG0065|consen 604 LIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLG 683 (1391)
T ss_pred hHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccC
Confidence 99999999999999999999999999999999999999999999999999999986 121
Q ss_pred ----cHHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000867 1201 ----TVKQFVRSYFDFKHDFLGVVAVVVAAFAVLFGVLFAVGIKRFNFQ 1245 (1247)
Q Consensus 1201 ----~~~~~~~~~~~~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~ 1245 (1247)
.+.+|+...|++++.|.|+|++|++||.++|.++..+++.|++.-
T Consensus 684 ~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 684 NDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred ceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 245788888889999999999999999999999999999999854
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-73 Score=721.29 Aligned_cols=731 Identities=21% Similarity=0.285 Sum_probs=410.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1247)
++||+||.||||||||.+|+|+++.. +|+|.++| .++||||++|++ +.||||||.||..+. .++
T Consensus 549 lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pWI~-ngTvreNILFG~~~d--~~r 612 (1381)
T KOG0054|consen 549 LVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPWIQ-NGTVRENILFGSPYD--EER 612 (1381)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccHhh-CCcHHHhhhcCcccc--HHH
Confidence 48999999999999999999999864 99999999 599999998766 559999999986553 245
Q ss_pred cchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHHh
Q 000867 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1247)
|+.+.+.|..++|.+ -|+.++.|.||++++ +|||||||||+||||+|
T Consensus 613 Y~~Vi~aC~L~~Dle--------------------------------~Lp~GD~TeIGErGi-nLSGGQKqRIsLARAVY 659 (1381)
T KOG0054|consen 613 YDKVIKACALKKDLE--------------------------------ILPFGDLTEIGERGI-NLSGGQKQRISLARAVY 659 (1381)
T ss_pred HHHHHHHccCHhHHh--------------------------------hcCCCCcceecCCcc-CCcHhHHHHHHHHHHHh
Confidence 655555555444332 267889999998776 79999999999999999
Q ss_pred cCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH---HH
Q 000867 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD---FF 237 (1247)
Q Consensus 161 ~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~---~f 237 (1247)
+++||++||+|+|++|+++..+|++.+... ..+++|++.+|| .-+..+.+|+|++|++|+|.+.|+.+|+.+ .|
T Consensus 660 ~~adIYLLDDplSAVDahvg~~if~~ci~~--~L~~KT~ILVTH-ql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~ 736 (1381)
T KOG0054|consen 660 QDADIYLLDDPLSAVDAHVGKHIFEECIRG--LLRGKTVILVTH-QLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDF 736 (1381)
T ss_pred ccCCEEEEcCcchhhhHhhhHHHHHHHHHh--hhcCCEEEEEeC-chhhhhhCCEEEEecCCeEecccCHHHHHhcchhH
Confidence 999999999999999999999999987643 234556666777 457889999999999999999999999873 23
Q ss_pred HhCCCCCCCCCChhhHHhhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhhhHHHhhcCCcccCCCCCccc---c
Q 000867 238 ESMGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELRTPFDKCKSHPAAL---T 314 (1247)
Q Consensus 238 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 314 (1247)
+++ ..+........ .....+.......+. +. +...... .+.+.. ...+..+... .
T Consensus 737 ~~l-------------~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~-~~~~~~~---~~~~~~-~~~~~~~~~~~~~e 794 (1381)
T KOG0054|consen 737 AEL-------------AHEEESEQEEE---ASEKDLESGESSRES-ES-RSLESLS---SEEEKS-KDEKEEEDKLVQEE 794 (1381)
T ss_pred HHH-------------hhccchhhccc---cccccccccccccch-hh-hhhhhhc---cccccc-ccccchhhHHHHHH
Confidence 322 00000000000 000000000000000 00 0000000 000000 0000000000 0
Q ss_pred cccccccHHHHHHHHHHHHHHHhhhChHHHH-HHHHHHHHHHHHHHhhh---ccccCCCCCc---ccccceehHH----H
Q 000867 315 TKMYGVGKKELLKANISRELLLMKRNSFVYI-FKLTQLSSMALVSMTLF---FRTKMHKDSV---SDGGIYVGAT----F 383 (1247)
Q Consensus 315 ~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~-~~~~~~~~~~l~~g~lf---~~~~~~~~~~---~~~~~~~g~~----f 383 (1247)
....+.-.+.....+++ . ........ +.+.........++.-| ++........ .+...|.+.. +
T Consensus 795 e~~~G~v~~~vY~~Y~~----a-~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~ 869 (1381)
T KOG0054|consen 795 ERETGKVSWSVYKKYIK----A-AGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGV 869 (1381)
T ss_pred HHhcCEeeHHHHHHHHH----h-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHH
Confidence 00011111111111110 0 00000000 01111111122222222 2222211111 1222222221 1
Q ss_pred HHHHHHHHhhHHHHHHHhhcchhhHHhhccCCcchhhHHHHHHHHHhhHHHHHHHHHHHHhhhccccccchHHHHHHHH-
Q 000867 384 FAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFL- 462 (1247)
Q Consensus 384 ~~i~~~~~~~~~~~~~~~~~~~v~~~~r~~~~y~~~~y~la~~l~~~p~~~~~~~~~~~i~Y~l~gl~~~~~~~~~~~l- 462 (1247)
...+.....++.....+......++ -.+.+.+.++|++|++++ +.||++|+|.
T Consensus 870 ~~~~~~~~rs~~~~~~~l~aS~~Lh------------~~ml~~Ilrapm~FFdtT--------------P~GRILNRFSk 923 (1381)
T KOG0054|consen 870 ASSLLTLLRSFLFAKGGLKASRKLH------------DKLLNSILRAPMSFFDTT--------------PTGRILNRFSK 923 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhCcchhcCCC--------------Cccchhhhccc
Confidence 1111222222222222222222222 236677888999996642 5899999993
Q ss_pred --------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccccccCCCccccchhhhhhCHHHHHHHHHHH
Q 000867 463 --------LLLLVNQMASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVA 534 (1247)
Q Consensus 463 --------~~~l~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~ 534 (1247)
+...+..+...+...++.+ ..++.....+++.+.+++ +++|.-..+|.-.+...
T Consensus 924 D~~~vD~~Lp~~~~~~~~~~~~~l~~~---~vi~~~~P~fli~~~pl~---------------v~~~~~~~~Y~~tsReL 985 (1381)
T KOG0054|consen 924 DIDTVDVLLPFTLEFFLQSLLNVLGIL---VVISYVTPWFLIAIIPLG---------------VIYYFVQRYYLATSREL 985 (1381)
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHHH---------------HHHHHHHHHHHHHhHHH
Confidence 1122222222222222221 222222222222222222 22344445555566666
Q ss_pred hhcCCCccccccCCCCccc-hHHHhhhcCccc--------------CCc------chhhHHHH-HHHHHHHHHHHHHHHH
Q 000867 535 NEFFGHSWRKFTSNSNETL-GVQVLKSRGFFP--------------HAY------WYWLGLGA-TIGFVLLFNIGFTLSL 592 (1247)
Q Consensus 535 ~ef~~~~~~~~~~~~~~~~-g~~~l~~~~~~~--------------~~~------~~w~~~~~-li~~~~~~~i~~~~~l 592 (1247)
.+.++.+.++...+.+++. |...+++++... ..+ ..|+++.. ++|.++++.......+
T Consensus 986 kRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl 1065 (1381)
T KOG0054|consen 986 KRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVL 1065 (1381)
T ss_pred HHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555544433222 333333333211 111 13655433 1222222222211111
Q ss_pred hhcccCCCCcceeecCCcccccCCcCCCCcccccCCCCCCCCCCCCcccccccchhhhhhhhccccccccCcCCCCCccC
Q 000867 593 TFLNQFEKPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLP 672 (1247)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1247)
. ......+..+....+.+- .+.+..++.++...+.+....++|++. .+...+++ .+...+..+++..+|
T Consensus 1066 ~-~~~~~~~g~vGLslsyal----~lt~~l~~~vR~~~elEn~m~SVERv~---eY~~~~~E---~p~~~~~~~pp~~WP 1134 (1381)
T KOG0054|consen 1066 L-PSGLISPGLVGLSLSYAL----QLTGLLQWLVRQSSELENNMVSVERVL---EYTDIPSE---APLEIEESRPPPSWP 1134 (1381)
T ss_pred c-cCCCCCcchHHHHHHHHH----HHHHHHHHHHHHHHHHHhcchhhhHHH---HHhcCCCC---CCCCCcCCCCCCCCC
Confidence 1 110000111000000000 011112222222112222222333221 12121111 111111122233444
Q ss_pred CCCcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEc
Q 000867 673 FEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 752 (1247)
Q Consensus 673 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~ 752 (1247)
..+.++|+|++.+|.. +...+|||||++|+|||++||+|++|||||||+++|.+... +.+|+|.||
T Consensus 1135 -~~G~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~ID 1200 (1381)
T KOG0054|consen 1135 -SKGEIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILID 1200 (1381)
T ss_pred -CCCeEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEc
Confidence 4578999999877742 23469999999999999999999999999999999998765 357999999
Q ss_pred CccCCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------
Q 000867 753 GYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG------ 823 (1247)
Q Consensus 753 g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g------ 823 (1247)
|.++.+ .+.|++++.+||||.+|. -|+|.|| ++..+..|+.++++|+..+|.+...+..+
T Consensus 1201 gvdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NL----------DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v 1269 (1381)
T KOG0054|consen 1201 GVDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNL----------DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEV 1269 (1381)
T ss_pred CeecccccHHHHHhcCeeeCCCCceec-Ccccccc----------CcccccCHHHHHHHHHHhChHHHHhhCCcCCCcee
Confidence 999865 467788999999999875 3666666 56667777889999999888765443332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCCh
Q 000867 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891 (1247)
Q Consensus 824 ~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 891 (1247)
.+++.++|.||||.+|+||||+++++||+|||+|+++|++|+..|+++||+..+ +||||+++|+.+.
T Consensus 1270 ~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~T 1336 (1381)
T KOG0054|consen 1270 SEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNT 1336 (1381)
T ss_pred cCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccch
Confidence 245678999999999999999999999999999999999999999999999774 7999999999864
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-71 Score=677.89 Aligned_cols=548 Identities=30% Similarity=0.494 Sum_probs=455.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1247)
++|||||+||||||||++|+|+...+...+|+|++||++.+....++.+|||.|||.+++++||+|++.|+|+++-+.+
T Consensus 58 l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~- 136 (613)
T KOG0061|consen 58 LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS- 136 (613)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-
Confidence 5899999999999999999999987557899999999888777778899999999999999999999999998864321
Q ss_pred cchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHHh
Q 000867 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1247)
. ..++.+++++++++.+||.+|+||.||+...+++||||||||+||..|+
T Consensus 137 ------~------------------------~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell 186 (613)
T KOG0061|consen 137 ------L------------------------SKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELL 186 (613)
T ss_pred ------C------------------------CHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHH
Confidence 1 1233455789999999999999999999988999999999999999999
Q ss_pred cCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHHHHHhC
Q 000867 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240 (1247)
Q Consensus 161 ~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~~f~~~ 240 (1247)
.||+||+|||||||||+.++.++++.|+++++. ++++|+++|||+.+++++||++++|++|+++|+|+++++.+||+++
T Consensus 187 ~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~ 265 (613)
T KOG0061|consen 187 TDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSL 265 (613)
T ss_pred cCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhC
Confidence 999999999999999999999999999999986 8999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHhhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhhhHHHhhcCCcccCCCCCcccccccccc
Q 000867 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELRTPFDKCKSHPAALTTKMYGV 320 (1247)
Q Consensus 241 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1247)
|++||++.||+||+.++.+.++......+. .......+.++......+..+......... .........
T Consensus 266 G~~~P~~~Npadf~l~l~s~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 334 (613)
T KOG0061|consen 266 GFPCPELENPADFLLDLLSVDSGTRELEEA------VRIAKLINKFSQTDNLKKTLEALEKSLSTS-----KKVEIGTSP 334 (613)
T ss_pred CCCCCCcCChHHHHHHHHccCCCchhHHhH------HHHHHHhhhccccchhhhhHHHHhhhcccc-----cccccccCC
Confidence 999999999999999977643100000000 000000000100000000000000000000 000111167
Q ss_pred cHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccceehHHHHHHHHHHHhhHH-HHHH
Q 000867 321 GKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGMS-DISM 399 (1247)
Q Consensus 321 ~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~lf~~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~-~~~~ 399 (1247)
+++.|+..+.+|.+...+|++.....+..+...+++++|.+|++.+.+... .....|++++.+....+..+. .+..
T Consensus 335 s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~---~~~~~g~~~~~~~~~~f~~~~~~i~~ 411 (613)
T KOG0061|consen 335 SWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKG---IQNRLGLFFFILSFMTFLSMFGAVPV 411 (613)
T ss_pred cHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHH---HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 889999999999999999999999999999999999999999998543322 224567777777766565554 5677
Q ss_pred HhhcchhhHHhhccCCcchhhHHHHHHHHHhhHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000867 400 TIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALFRFIA 479 (1247)
Q Consensus 400 ~~~~~~v~~~~r~~~~y~~~~y~la~~l~~~p~~~~~~~~~~~i~Y~l~gl~~~~~~~~~~~l~~~l~~~~~~~~~~~i~ 479 (1247)
...++++|.||+..++|+.++|++++.+.++|+.++.+++|+.++|||+|++++..+|+.+.++.++...++++++.+++
T Consensus 412 f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~ 491 (613)
T KOG0061|consen 412 FPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFIS 491 (613)
T ss_pred hHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhccccccCCCccccchhhhhhCHHHHHHHHHHHhhcCCCccccccC--CCCccchHHH
Q 000867 480 AAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSWRKFTS--NSNETLGVQV 557 (1247)
Q Consensus 480 ~~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~~ef~~~~~~~~~~--~~~~~~g~~~ 557 (1247)
+..++...+..+++++++.+++++||+++.+.+|.||.|+.|+|+.+|++++++.|+|.+....|... ..+...|.++
T Consensus 492 ~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 571 (613)
T KOG0061|consen 492 AIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDV 571 (613)
T ss_pred HhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998744444433 3456668899
Q ss_pred hhhcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 000867 558 LKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLN 596 (1247)
Q Consensus 558 l~~~~~~~~~~~~w~~~~~li~~~~~~~i~~~~~l~~~~ 596 (1247)
+...++...+ .|.++.++.++.++|++.+++++++..
T Consensus 572 l~~~~~~~~~--~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 572 LKQLGFEDSS--FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred HHhcCCcccc--cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9998886654 588999999999999999999887653
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=683.33 Aligned_cols=551 Identities=24% Similarity=0.385 Sum_probs=451.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1247)
+++|+|||||||||||++|+|+.+++...+|+|.+||.+++....++.++||+|+|.+++++||+|||.|+++++.....
T Consensus 53 ~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 132 (617)
T TIGR00955 53 LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRV 132 (617)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCC
Confidence 58999999999999999999998875446899999999876545567899999999999999999999999876532110
Q ss_pred cchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCc-cccccccccchhHHHHHH
Q 000867 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEM-VRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~-~~~LSGGqrqRvsiA~al 159 (1247)
. .++.+..++++++.+||.++.||.||++. .++|||||||||+|||+|
T Consensus 133 -------~------------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL 181 (617)
T TIGR00955 133 -------T------------------------KKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASEL 181 (617)
T ss_pred -------C------------------------HHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHH
Confidence 0 01123357889999999999999999863 688999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHHHHHh
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFES 239 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~~f~~ 239 (1247)
+++|++++|||||+|||+.++.++++.|+++++ .+.++|+++||++.+++++||++++|++|+++|+|+++++.+||++
T Consensus 182 ~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~ 260 (617)
T TIGR00955 182 LTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSD 260 (617)
T ss_pred HcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHH
Confidence 999999999999999999999999999999875 4677888888888899999999999999999999999999999999
Q ss_pred CCCCCCCCCChhhHHhhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhhhHHHhhcCCcccCC---CCCcccccc
Q 000867 240 MGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELRTPFDKCK---SHPAALTTK 316 (1247)
Q Consensus 240 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 316 (1247)
+|++||++.|++|++.++.+....... . ...+.+++.+.++.++..++..++......... .........
T Consensus 261 ~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (617)
T TIGR00955 261 LGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGI 333 (617)
T ss_pred cCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhhhhcccccccccccccccc
Confidence 999999999999999988764321110 0 001223444455444333332222111100000 000011123
Q ss_pred cccccHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccceehHHHHHHHHHHHhhH-H
Q 000867 317 MYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTMFNGM-S 395 (1247)
Q Consensus 317 ~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~lf~~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~-~ 395 (1247)
.+..+...|+..+.+|.+...+|++..+..++.+.+++++++|++|++.+.+. .+.....|++|+.++...+.++ .
T Consensus 334 ~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~~g~lf~~~~~~~f~~~~~ 410 (617)
T TIGR00955 334 GYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNINGALFLFLTNMTFQNVFP 410 (617)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999876432 2233456777877776666654 3
Q ss_pred HHHHHhhcchhhHHhhccCCcchhhHHHHHHHHHhhHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHHH
Q 000867 396 DISMTIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQMASALF 475 (1247)
Q Consensus 396 ~~~~~~~~~~v~~~~r~~~~y~~~~y~la~~l~~~p~~~~~~~~~~~i~Y~l~gl~~~~~~~~~~~l~~~l~~~~~~~~~ 475 (1247)
.+.....++++++||+..++|++.+|++++.+.++|+.++.+++|.+++|||+|+++++++|+.++++.++...+..+++
T Consensus 411 ~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~ 490 (617)
T TIGR00955 411 VINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFG 490 (617)
T ss_pred HHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhccccccCCCccccchhhhhhCHHHHHHHHHHHhhcCCCcc-ccccCCC---Cc
Q 000867 476 RFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSW-RKFTSNS---NE 551 (1247)
Q Consensus 476 ~~i~~~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~~ef~~~~~-~~~~~~~---~~ 551 (1247)
.++++++++..+|..+++++++++++|+||+++.++||.||+|++|+||+.|++++++.|||.+..+ .|...+. +.
T Consensus 491 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~ 570 (617)
T TIGR00955 491 YLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCP 570 (617)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988765 4432221 23
Q ss_pred cchHHHhhhcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 000867 552 TLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFL 595 (1247)
Q Consensus 552 ~~g~~~l~~~~~~~~~~~~w~~~~~li~~~~~~~i~~~~~l~~~ 595 (1247)
..|.++++.+++... ++|.++++++++.++|.+++++++++.
T Consensus 571 ~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 571 SSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred cChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999988664 358999999999999999999988753
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-69 Score=669.93 Aligned_cols=548 Identities=21% Similarity=0.352 Sum_probs=426.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1247)
+++|+|||||||||||++|+|+.+|+ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++....
T Consensus 96 ~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~- 172 (659)
T PLN03211 96 ILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS- 172 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-
Confidence 47999999999999999999998874 3589999999887532 24569999999999999999999999875432100
Q ss_pred cchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHHh
Q 000867 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1247)
.. .++.++.++++++.+||+++.||.||++..++|||||||||+||++|+
T Consensus 173 ------~~------------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~ 222 (659)
T PLN03211 173 ------LT------------------------KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 222 (659)
T ss_pred ------CC------------------------HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHH
Confidence 00 011223467889999999999999999999999999999999999999
Q ss_pred cCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHHHHHhC
Q 000867 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240 (1247)
Q Consensus 161 ~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~~f~~~ 240 (1247)
.+|+|++|||||+|||+.++.++++.|+++++ .++++|+++||+..++.++||++++|++|+++++|+.+++.+||+++
T Consensus 223 ~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~ 301 (659)
T PLN03211 223 INPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESV 301 (659)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHC
Confidence 99999999999999999999999999999875 45677776666666899999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHhhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhhhHHHhhcC---CcccCC-----CCCc-
Q 000867 241 GFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELRT---PFDKCK-----SHPA- 311 (1247)
Q Consensus 241 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~- 311 (1247)
||+||++.||+||+.++.+.........+.+.+ ...+++.+.|++... ++...+.+. .....+ ....
T Consensus 302 G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (659)
T PLN03211 302 GFSPSFPMNPADFLLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEH 377 (659)
T ss_pred CCCCCCCCCHHHHHHHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhccccccc
Confidence 999999999999999988653211000000000 011223333322110 000000000 000000 0000
Q ss_pred ccccccccccHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccceehHHHHHHHHHHH
Q 000867 312 ALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTMF 391 (1247)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~lf~~~~~~~~~~~~~~~~~g~~f~~i~~~~~ 391 (1247)
......+..+++.|+..+++|.+.. +|++.....++.+.+++++++|++|++.+ ..+...+.|++|+.+++..+
T Consensus 378 ~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~ 451 (659)
T PLN03211 378 RSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGV 451 (659)
T ss_pred ccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHH
Confidence 0011123467889999999999887 78777778899999999999999999863 12344567888888766544
Q ss_pred -hhHHHHHHHhhcchhhHHhhccCCcchhhHHHHHHHHHhhHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHH
Q 000867 392 -NGMSDISMTIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQM 470 (1247)
Q Consensus 392 -~~~~~~~~~~~~~~v~~~~r~~~~y~~~~y~la~~l~~~p~~~~~~~~~~~i~Y~l~gl~~~~~~~~~~~l~~~l~~~~ 470 (1247)
..+..+.....++++++|||..++|++.+|++++.+.++|+.++.+++|+.++|||+|+++++++|+.++++.++...+
T Consensus 452 ~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~ 531 (659)
T PLN03211 452 FPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLV 531 (659)
T ss_pred HHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHH
Confidence 4456677777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccccccCCCccccchhhhhhCHHHHHHHHHHHhhcCCCc-----cccc
Q 000867 471 ASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHS-----WRKF 545 (1247)
Q Consensus 471 ~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~~ef~~~~-----~~~~ 545 (1247)
+++++.++++++++..+|+.+++++++++++|+||+++ +||.||+|++|+||+.|++++++.|||.+.. +.|.
T Consensus 532 ~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~ 609 (659)
T PLN03211 532 SQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCS 609 (659)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCC
Confidence 99999999999999999999999999999999999996 7999999999999999999999999997643 2332
Q ss_pred cCCCCccchHHHhhhcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 000867 546 TSNSNETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLN 596 (1247)
Q Consensus 546 ~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~li~~~~~~~i~~~~~l~~~~ 596 (1247)
........++.++...... ....|.+++++++++++++++++++++..+
T Consensus 610 ~~~~~~~~~c~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 610 LPHGSDRASCKFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred CcccCCCCCCccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2111000111122222222 224688999999999999999998887543
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-70 Score=670.40 Aligned_cols=197 Identities=29% Similarity=0.425 Sum_probs=164.4
Q ss_pred cCCCCcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEE
Q 000867 671 LPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT 750 (1247)
Q Consensus 671 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~ 750 (1247)
.|...+.++++||+++|+..+ +.+||+|+|++|++|+.+||+|||||||||.+.+|-+..+ +..|.|.
T Consensus 981 ~~~~~G~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~ 1048 (1228)
T KOG0055|consen 981 LPNVKGDIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVK 1048 (1228)
T ss_pred cccceeEEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEE
Confidence 344567899999999997543 4579999999999999999999999999999999987655 4589999
Q ss_pred EcCccCCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHH-------cCCCccccc
Q 000867 751 ISGYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMEL-------VELNPLRQS 820 (1247)
Q Consensus 751 i~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~-------l~l~~~~~~ 820 (1247)
|||.+++. ...|+.+|.|.|+|.||. -|++||+.|+. . +.+.++ +.++++. .+|.+-.||
T Consensus 1049 IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~----~-~vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT 1118 (1228)
T KOG0055|consen 1049 IDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS----E-EVSEEE----IIEAAKLANAHNFISSLPQGYDT 1118 (1228)
T ss_pred ECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC----C-CCCHHH----HHHHHHHhhhHHHHhcCcCcccC
Confidence 99999865 346788999999999986 59999999981 1 133333 3334443 345566789
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCCh
Q 000867 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891 (1247)
Q Consensus 821 ~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 891 (1247)
.+|..+ .+||||||||++||||+++||+||+|||+||.||+++.+.++++|.+. ..|||.|+++|++|.
T Consensus 1119 ~vGerG-~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a-~~gRT~IvIAHRLST 1187 (1228)
T KOG0055|consen 1119 RVGERG-VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA-MEGRTTIVIAHRLST 1187 (1228)
T ss_pred ccCccc-CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-hcCCcEEEEecchhh
Confidence 998654 479999999999999999999999999999999999999999999985 468999999999973
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-64 Score=662.63 Aligned_cols=201 Identities=28% Similarity=0.410 Sum_probs=172.9
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++. .++.+|+|||+.|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 5889999887631 124699999999999999999999999999999999998763 489999999887
Q ss_pred Cc--ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000867 757 KQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1247)
Q Consensus 757 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 834 (1247)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. .+.++.++.++++++.+||.+..|+.++ .|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHH
Confidence 43 2235679999999999999999999998776653 2334445678899999999998888764 699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 835 r~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||++||+||+.+|+|++|||||+|||+.+++.+++.|+++.++|+|||+|+|++. ++-.+.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDr 2139 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTR 2139 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998777999999999985 55666777
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-65 Score=682.10 Aligned_cols=197 Identities=23% Similarity=0.294 Sum_probs=163.4
Q ss_pred CcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCc
Q 000867 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1247)
Q Consensus 675 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 754 (1247)
.+.++|+|++++|+. +.+++|+|+|++|+|||++||+||||||||||+++|.|..++ .+|+|.|||.
T Consensus 1235 ~g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~ 1301 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGC 1301 (1622)
T ss_pred CCcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCE
Confidence 357999999998841 123699999999999999999999999999999999998763 4799999999
Q ss_pred cCCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccC
Q 000867 755 PKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGL 824 (1247)
Q Consensus 755 ~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~ 824 (1247)
++.. ..+|+.+++|||++.++.. |+||||.+.. .. .++.++++++..++.+. .|+.+|.
T Consensus 1302 dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge 1370 (1622)
T PLN03130 1302 DISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EH----NDADLWESLERAHLKDVIRRNSLGLDAEVSE 1370 (1622)
T ss_pred ecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CC----CHHHHHHHHHHcCcHHHHHhCccccCccccC
Confidence 8764 4567889999999999975 9999996531 11 23346777777776543 3555654
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++.+||||||||+||||||+++|+||+||||||+||++++..|++.|++.. +++|||+++|+++. ...+|+
T Consensus 1371 -~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~Dr 1441 (1622)
T PLN03130 1371 -AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDR 1441 (1622)
T ss_pred -CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCE
Confidence 345799999999999999999999999999999999999999999999875 58999999999864 445787
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-64 Score=672.75 Aligned_cols=196 Identities=22% Similarity=0.289 Sum_probs=162.8
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
+.++|+|++++++. +.+++|+|+|++|+|||++||+||||||||||+++|.|..++ .+|+|.|||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEE
Confidence 57999999998841 224699999999999999999999999999999999998763 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 825 (1247)
+.+ ..+|+.++||||++.+++. |+||||.+.. ..+ ++.++++++..++.+. .|+.+|.
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e- 1367 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSE- 1367 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecC-
Confidence 754 4567889999999999975 9999996431 122 3346778887777543 3555554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++.+||||||||++|||||+++|+||+||||||+||++++..|++.|++.. +++|||+++|+++ ....+|+
T Consensus 1368 ~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~Dr 1438 (1495)
T PLN03232 1368 GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDK 1438 (1495)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCE
Confidence 345799999999999999999999999999999999999999999999875 5799999999984 3455787
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=659.42 Aligned_cols=197 Identities=19% Similarity=0.225 Sum_probs=163.0
Q ss_pred CcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCc
Q 000867 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1247)
Q Consensus 675 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 754 (1247)
.+.++|+|++++++. +...+|+|||++|+|||++||+||||||||||+++|.|..++ .+|+|.|||.
T Consensus 1282 ~g~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~ 1348 (1522)
T TIGR00957 1282 RGRVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGL 1348 (1522)
T ss_pred CCcEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCE
Confidence 357999999999852 123599999999999999999999999999999999998663 4799999999
Q ss_pred cCCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccC
Q 000867 755 PKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGL 824 (1247)
Q Consensus 755 ~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~ 824 (1247)
|+.. ..+|+.++||||++.+++. |+||||.... ..+ ++.++++++..++.+. .|+.+|.
T Consensus 1349 dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e 1417 (1522)
T TIGR00957 1349 NIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAE 1417 (1522)
T ss_pred EccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecC
Confidence 9764 4567889999999999975 9999995211 122 3346778888877643 3555554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++.+||||||||+||||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....+|+
T Consensus 1418 -~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~Dr 1488 (1522)
T TIGR00957 1418 -GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTR 1488 (1522)
T ss_pred -CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCE
Confidence 345799999999999999999999999999999999999999999999865 5799999999985 3455777
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=632.89 Aligned_cols=201 Identities=18% Similarity=0.309 Sum_probs=165.2
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC------------
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------ 743 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~------------ 743 (1247)
..++|+||+|+|+.. +++++|+|+|++|+||+++||+||||||||||+++|.|..++.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 469999999998521 1246999999999999999999999999999999999975531
Q ss_pred ----------------------------------------eEEEEEEEcCccCCc---ccccceEEEeccCCCCCCCcCH
Q 000867 744 ----------------------------------------YITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPFVTV 780 (1247)
Q Consensus 744 ----------------------------------------~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv 780 (1247)
+.+|+|.+||.++.. ..+++.+|||+|++.+|+ .|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccH
Confidence 147999999998754 456788999999999985 799
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000867 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-------LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853 (1247)
Q Consensus 781 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~l 853 (1247)
+||+.|+. + +.+. +.++++++..++.+ -.||.+|. .+..||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~----~-~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK----E-DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99998862 1 2232 23666666666543 34778874 3457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeccCChHHHHhhhc
Q 000867 854 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 854 DEptsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||+||+++++.|++.|+++. .+++|+|+++|+++ ..+..|+
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~ 1427 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDK 1427 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCE
Confidence 99999999999999999999875 36899999999984 4566777
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-60 Score=636.87 Aligned_cols=196 Identities=20% Similarity=0.256 Sum_probs=164.2
Q ss_pred CcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCc
Q 000867 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1247)
Q Consensus 675 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 754 (1247)
.+.++|+||+++++. +.+.+|+|+|++|+|||++||+|+||||||||+++|.|..+ .+|+|.|||.
T Consensus 1215 ~g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~ 1280 (1490)
T TIGR01271 1215 GGQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGV 1280 (1490)
T ss_pred CCeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCE
Confidence 357999999998852 22469999999999999999999999999999999999864 3799999999
Q ss_pred cCCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccC
Q 000867 755 PKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGL 824 (1247)
Q Consensus 755 ~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~ 824 (1247)
++.. ..+++.++||||++.+++. |+||||.... +..++.++++++..+|.+. .|+.+|.
T Consensus 1281 di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~----------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e 1349 (1490)
T TIGR01271 1281 SWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE----------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD 1349 (1490)
T ss_pred EcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc----------CCCHHHHHHHHHHCCCHHHHHhCcccccccccc
Confidence 9764 3467889999999999985 9999994321 1124457888888888643 3555654
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++.+||||||||+||||||+++|+||+||||||+||.++...|++.|++.. +++|||+++|+++ ....+|+
T Consensus 1350 -~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~Dr 1420 (1490)
T TIGR01271 1350 -GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQ 1420 (1490)
T ss_pred -CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCE
Confidence 446799999999999999999999999999999999999999999999875 4799999999984 4556887
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-60 Score=636.08 Aligned_cols=196 Identities=24% Similarity=0.268 Sum_probs=163.8
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
+.++|+|++++++. +...+|+||||+|+|||++||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEE
Confidence 57999999998842 123599999999999999999999999999999999998763 47999999999
Q ss_pred CCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 825 (1247)
+.. ..+++.++||||++.+++. |+||||... ...+ ++.++++++..++.+. .|+.+|.
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge- 1441 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLE- 1441 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccC-
Confidence 764 4567889999999999875 999999431 1122 3457888888888654 3556654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 826 GESGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~-p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++.+||||||||+||||||+++ |+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....+|+
T Consensus 1442 ~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~Dr 1513 (1560)
T PTZ00243 1442 GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDK 1513 (1560)
T ss_pred CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCE
Confidence 3467999999999999999996 89999999999999999999999999865 4799999999984 5567887
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-58 Score=532.25 Aligned_cols=444 Identities=25% Similarity=0.305 Sum_probs=328.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCC-CceeeEEEECCccCCCCcc-------cceEEEecccc--ccCCCCCHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSK-LKFSGRVTYNGHGMDEFVP-------QRTAAYISQHD--VHIGEMTVRETLAF 70 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~-~~~~G~v~~~g~~~~~~~~-------~~~i~yv~Q~~--~~~~~lTv~e~l~f 70 (1247)
+++|+|.|||||||+.++|.|.+++. ...+|+|.++|+++..... .+.++|++|++ .|-|-+||.+.|.-
T Consensus 37 ~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E 116 (539)
T COG1123 37 ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIRE 116 (539)
T ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHH
Confidence 47999999999999999999999876 3468999999987643322 26799999995 45666899999877
Q ss_pred HHhccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCcccccccccc
Q 000867 71 SARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQK 150 (1247)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 150 (1247)
....++... .++++..+.++|+.+||++.... ++.++.||||||
T Consensus 117 ~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~r 160 (539)
T COG1123 117 ALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMR 160 (539)
T ss_pred HHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHH
Confidence 655443110 12334456789999999986654 678999999999
Q ss_pred chhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCc
Q 000867 151 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1247)
Q Consensus 151 qRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~ 230 (1247)
|||.||+||+.+|++|++||||++||+.++.+|++.|+++.++ .++.++.++|+..-+.++||||+||.+|++++.|++
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~ 239 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999998764 578888899999999999999999999999999998
Q ss_pred chHHHHHHhCCCCCCCCCChhhHHhhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhhhHHHhhcCCcccCCCCC
Q 000867 231 ELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELRTPFDKCKSHP 310 (1247)
Q Consensus 231 ~~~~~~f~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1247)
+++.+.+ .+ |
T Consensus 240 ~~i~~~p--------~h-------------------------p------------------------------------- 249 (539)
T COG1123 240 EEILSNP--------QH-------------------------P------------------------------------- 249 (539)
T ss_pred HHHHhcc--------CC-------------------------c-------------------------------------
Confidence 8875310 00 0
Q ss_pred cccccccccccHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccceehHHHHHHHHHH
Q 000867 311 AALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTM 390 (1247)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~lf~~~~~~~~~~~~~~~~~g~~f~~i~~~~ 390 (1247)
|.. .++
T Consensus 250 -------YT~-------~Ll------------------------------------------------------------ 255 (539)
T COG1123 250 -------YTR-------GLL------------------------------------------------------------ 255 (539)
T ss_pred -------ccH-------HHH------------------------------------------------------------
Confidence 000 000
Q ss_pred HhhHHHHHHHhhcchhhHHhhccCCcchhhHHHHHHHHHhhHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHH
Q 000867 391 FNGMSDISMTIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQM 470 (1247)
Q Consensus 391 ~~~~~~~~~~~~~~~v~~~~r~~~~y~~~~y~la~~l~~~p~~~~~~~~~~~i~Y~l~gl~~~~~~~~~~~l~~~l~~~~ 470 (1247)
...|.....+
T Consensus 256 -----------~a~p~~~~~~----------------------------------------------------------- 265 (539)
T COG1123 256 -----------AAVPRLGDEK----------------------------------------------------------- 265 (539)
T ss_pred -----------hhCCCccccc-----------------------------------------------------------
Confidence 0000000000
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccccccCCCccccchhhhhhCHHHHHHHHHHHhhcCCCccccccCCCC
Q 000867 471 ASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSWRKFTSNSN 550 (1247)
Q Consensus 471 ~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~~ef~~~~~~~~~~~~~ 550 (1247)
..
T Consensus 266 -------------------------------------------------------------------------~~----- 267 (539)
T COG1123 266 -------------------------------------------------------------------------II----- 267 (539)
T ss_pred -------------------------------------------------------------------------cc-----
Confidence 00
Q ss_pred ccchHHHhhhcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeecCCcccccCCcCCCCcccccCCCC
Q 000867 551 ETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEKPRAVISDESESNDLGNRIGGTAQLSTHGSN 630 (1247)
Q Consensus 551 ~~~g~~~l~~~~~~~~~~~~w~~~~~li~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1247)
+
T Consensus 268 --------------------~----------------------------------------------------------- 268 (539)
T COG1123 268 --------------------R----------------------------------------------------------- 268 (539)
T ss_pred --------------------c-----------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCcccccccchhhhhhhhccccccccCcCCCCCccCCCCcEEEEEeEEEEEecCchhhhccccccccceeeceE
Q 000867 631 SSHKTCSESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVS 710 (1247)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs 710 (1247)
... . . . .....-++.+|++..+..+.... ....+...+++|||
T Consensus 269 ~~~------~-----------------~--~----------~~~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VS 311 (539)
T COG1123 269 LPR------R-----------------G--P----------LRAEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVS 311 (539)
T ss_pred ccc------c-----------------c--c----------cccCceeEeeeeeeeeccccccc--cccccceeeeeeee
Confidence 000 0 0 0 00012355666655554322110 00112356999999
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC--Cc---ccccceEEEeccC--CCCCCCcCHHHH
Q 000867 711 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK--KQ---ETFTRISGYCEQN--DIHSPFVTVYES 783 (1247)
Q Consensus 711 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~--~~---~~~~~~~~~v~q~--~~~~~~ltv~e~ 783 (1247)
|++++||++||+|+||||||||.++|+|..++ .+|.|.++|.+. +. ...++.+-+++|| ..+.|.+||++.
T Consensus 312 f~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~ 389 (539)
T COG1123 312 FDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDI 389 (539)
T ss_pred eEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHH
Confidence 99999999999999999999999999998764 479999999762 11 1233445556666 567899999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000867 784 LLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862 (1247)
Q Consensus 784 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~ 862 (1247)
+.-....... ....++++++.++++.+||.+ ..+.+ +.+||||||||++|||||+.+|++|++|||||.||+
T Consensus 390 i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDv 462 (539)
T COG1123 390 LAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDV 462 (539)
T ss_pred HHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCH
Confidence 9765543322 224566678999999999985 34444 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 863 RAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 863 ~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
..+..+.++|+++.++ |.|.|+++||... +-+.-|+
T Consensus 463 svqa~VlnLl~~lq~e~g~t~lfISHDl~v-V~~i~dr 499 (539)
T COG1123 463 SVQAQVLNLLKDLQEELGLTYLFISHDLAV-VRYIADR 499 (539)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHhhCce
Confidence 9999999999998755 9999999999752 3333455
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-58 Score=561.29 Aligned_cols=187 Identities=21% Similarity=0.345 Sum_probs=153.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCC
Q 000867 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFTRISGYCEQND---IHSPF 777 (1247)
Q Consensus 705 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 777 (1247)
+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... ..++.+||++|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 79999999999999999999999999999999998653 479999999876431 1345689999995 57788
Q ss_pred cCHHHHHHHHhhccCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000867 778 VTVYESLLYSAWLRLP---PEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853 (1247)
Q Consensus 778 ltv~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~l 853 (1247)
+||.|++.+....... .....+..++.++++++.+|+. +..++.++ .||||||||++||++|+.+|++|+|
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999875311100 0012233345688999999995 56676654 6999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 854 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 854 DEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~ 464 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDR 464 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCE
Confidence 9999999999999999999999877999999999985 45556666
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-58 Score=562.25 Aligned_cols=190 Identities=23% Similarity=0.358 Sum_probs=153.9
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc----cccceEEEeccCC---CCC
Q 000867 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFTRISGYCEQND---IHS 775 (1247)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~---~~~ 775 (1247)
+.+|+|+||+|++||++||+||||||||||+++|+|..++ +.+|+|.++|.++... ..++.++|++|+. .++
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 3599999999999999999999999999999999997641 1379999999875421 1234589999985 467
Q ss_pred CCcCHHHHHHHHhhccCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 000867 776 PFVTVYESLLYSAWLRLPP--EVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIF 852 (1247)
Q Consensus 776 ~~ltv~e~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~ 852 (1247)
+.+||.|++.+........ ..+.+..+++++++++.+++. +..+..++ .|||||||||+||+||+.+|++|+
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrv~lA~al~~~p~lll 428 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPKILI 428 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccc-----cCCHHHHHHHHHHHHHhhCCCEEE
Confidence 8899999998753211110 012233445688999999996 46676653 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 853 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 853 lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 429 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~ 474 (506)
T PRK13549 429 LDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDR 474 (506)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999998878999999999985 45566676
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-58 Score=562.89 Aligned_cols=187 Identities=21% Similarity=0.335 Sum_probs=152.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc----cccceEEEeccC---CCCCCC
Q 000867 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFTRISGYCEQN---DIHSPF 777 (1247)
Q Consensus 705 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~---~~~~~~ 777 (1247)
+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... ..++.+||++|+ ..+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 89999999999999999999999999999999998653 479999999876431 224568999998 457888
Q ss_pred cCHHHHHHHHhhcc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 000867 778 VTVYESLLYSAWLR---LPP--E-VDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSI 850 (1247)
Q Consensus 778 ltv~e~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~i 850 (1247)
+||.|++.+....+ ... . ......++.++++++.+|+. +..++.++ .|||||||||+|||+|+.+|++
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~l 430 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT-----ELSGGNQQKVLISKWLCCCPEV 430 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc-----cCChHHHHHHHHHHHHhcCCCE
Confidence 99999997653211 000 0 11222335678899999996 66777654 6999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 851 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 851 l~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|+|||||+|||+.+...+.+.|++++++|.|||+++|++. .+.+..|+
T Consensus 431 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~ 478 (510)
T PRK09700 431 IIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDR 478 (510)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCE
Confidence 9999999999999999999999998877999999999985 44555666
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-57 Score=565.33 Aligned_cols=211 Identities=20% Similarity=0.200 Sum_probs=166.4
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
-++++|+++.++...... ......+.+|+||||+|++||++||+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 313 ~L~~~~l~~~y~~~~~~~--~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLL--NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCccc--cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEEC
Confidence 488999988774210000 0000124699999999999999999999999999999999998653 479999999876
Q ss_pred Ccc------cccceEEEeccCC--CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000867 757 KQE------TFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGE 827 (1247)
Q Consensus 757 ~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 827 (1247)
... .+++.++|++|++ .+++.+||.|++.+....+. ....+..++++.++++.+||. +..+..+
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----- 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP----- 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----
Confidence 421 2345789999997 57889999999987643321 112334456788999999996 4556654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
..|||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++.++ |.|||+++|+++ .+.+..|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dr 533 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHR 533 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 479999999999999999999999999999999999999999999998765 899999999986 34556676
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=557.91 Aligned_cols=202 Identities=22% Similarity=0.315 Sum_probs=159.5
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEc-Ccc-
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYP- 755 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~-g~~- 755 (1247)
++++|+++.++.. ..+++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~ 349 (520)
T TIGR03269 280 IKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEW 349 (520)
T ss_pred EEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCcc
Confidence 6677777765310 01124699999999999999999999999999999999998653 47999996 532
Q ss_pred --CCc------ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccc
Q 000867 756 --KKQ------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-----LRQSLV 822 (1247)
Q Consensus 756 --~~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-----~~~~~~ 822 (1247)
... ...++.+||++|++.+++.+||.|++.+...+. ...+..+++++++++.+||.+ ..++.+
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 425 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYP 425 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh
Confidence 111 112456899999998889999999998754321 122333456788999999975 345544
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 823 g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
..|||||||||+|||||+.+|++|+|||||+|||+.+...+++.|++++++ |.|||+++|++. .+.+..|+
T Consensus 426 -----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~ 497 (520)
T TIGR03269 426 -----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDR 497 (520)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCE
Confidence 469999999999999999999999999999999999999999999998754 899999999986 35556676
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-57 Score=555.20 Aligned_cols=190 Identities=21% Similarity=0.349 Sum_probs=154.2
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc----ccccceEEEeccCC---CCC
Q 000867 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFTRISGYCEQND---IHS 775 (1247)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~~~v~q~~---~~~ 775 (1247)
+.+|+|+||++++||+++|+||||||||||+++|+|..++ +.+|+|.++|.++.. ...++.+||++|+. .++
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 3589999999999999999999999999999999998642 137999999987642 12345689999995 578
Q ss_pred CCcCHHHHHHHHhh--ccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 000867 776 PFVTVYESLLYSAW--LRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIF 852 (1247)
Q Consensus 776 ~~ltv~e~l~~~~~--~~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~ 852 (1247)
+.+||+|++.+... ............++.++++++.+++.+ ..++.++ .||||||||++|||+|+.+|++|+
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lll 426 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-----RLSGGNQQKAVLAKMLLTNPRVLI 426 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc-----cCCHHHHHHHHHHHHHhhCCCEEE
Confidence 89999999987532 110001122334456889999999964 4566653 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 853 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 853 lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||+|||+.++..+++.|++++++|.|||+++|++. .+.+..|+
T Consensus 427 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~ 472 (500)
T TIGR02633 427 LDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDR 472 (500)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999998878999999999985 45555666
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-57 Score=555.67 Aligned_cols=187 Identities=20% Similarity=0.242 Sum_probs=151.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCC
Q 000867 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFTRISGYCEQND---IHSPF 777 (1247)
Q Consensus 705 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 777 (1247)
+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|+. .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 68999999999999999999999999999999997653 479999999876431 1234689999984 47788
Q ss_pred cCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000867 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 856 (1247)
Q Consensus 778 ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEp 856 (1247)
+|+.|++......+..........++.++++++.+|+. +..++.+ +.|||||||||+||++|+.+|++|+||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999986421111110011222345678999999997 6667665 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 857 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 857 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|+|||+.+...+.+.|++++++|.|||+++|++. .+.+..|+
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~ 472 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADR 472 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 9999999999999999999877999999999985 45566676
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-57 Score=555.94 Aligned_cols=187 Identities=24% Similarity=0.318 Sum_probs=153.5
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc------cccceEEEeccCC--CC
Q 000867 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE------TFTRISGYCEQND--IH 774 (1247)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~~~v~q~~--~~ 774 (1247)
+.+|+|+|++|++||++||+||||||||||+++|+|..+ .+|+|.++|.++... .+++.+||++|+. .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 469999999999999999999999999999999999864 379999999875421 1245689999996 47
Q ss_pred CCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000867 775 SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853 (1247)
Q Consensus 775 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~l 853 (1247)
++.+||+|++.+....+.. ..+....+++++++++.+|+. +..+..+ ..|||||||||+|||||+.+|++|+|
T Consensus 376 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 7889999999886533211 122333456688999999997 4556654 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 854 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 854 DEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||+|||+.++..+.+.|++++++ |+|||+++|++.. +.+..|+
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~-~~~~~d~ 495 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHV-VRALCHQ 495 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHHhcCe
Confidence 9999999999999999999998765 8999999999853 4455666
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-57 Score=549.96 Aligned_cols=187 Identities=20% Similarity=0.335 Sum_probs=152.4
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCC
Q 000867 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFTRISGYCEQND---IHSPF 777 (1247)
Q Consensus 705 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 777 (1247)
+++|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 8999999999999999999999999999999999865 3479999999875421 2235689999985 47888
Q ss_pred cCHHHHHHHHhhccC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000867 778 VTVYESLLYSAWLRL-PPE--VDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853 (1247)
Q Consensus 778 ltv~e~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~l 853 (1247)
+|+.|++.+...... +.. ......++.++++++.+++. +..++.++ .|||||||||+||++|+.+|++|+|
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllL 420 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILL 420 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEE
Confidence 999999976532111 000 01223345678899999994 66777664 6999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 854 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 854 DEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||+|||..+...+++.|++++++|.|||+++|++. .+.+..|+
T Consensus 421 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~ 465 (501)
T PRK11288 421 DEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADR 465 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCE
Confidence 9999999999999999999999888999999999985 34455566
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-56 Score=542.79 Aligned_cols=188 Identities=17% Similarity=0.273 Sum_probs=148.3
Q ss_pred ceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc----cccceEEEeccCCC---CCC
Q 000867 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFTRISGYCEQNDI---HSP 776 (1247)
Q Consensus 704 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~~---~~~ 776 (1247)
.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|+.. +++
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~ 339 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYA 339 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCccc
Confidence 489999999999999999999999999999999998653 479999999876432 12345899999853 577
Q ss_pred CcCHHHHHHHHhh--ccCCCC-CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 000867 777 FVTVYESLLYSAW--LRLPPE-VDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIF 852 (1247)
Q Consensus 777 ~ltv~e~l~~~~~--~~~~~~-~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~ 852 (1247)
.+|+.++..+... ...... ......++.++++++.+++. +..++.+ ..||||||||++||++|+.+|+||+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~ill 414 (491)
T PRK10982 340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILM 414 (491)
T ss_pred CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHHhcCCCEEE
Confidence 8888777432210 000001 12223345678899999995 4456555 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 853 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 853 lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||+|||+.++..+++.|+++.++|+|||+++|++.. +.+..|+
T Consensus 415 LDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~-~~~~~d~ 460 (491)
T PRK10982 415 LDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPE-LLGITDR 460 (491)
T ss_pred EcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHH-HHhhCCE
Confidence 999999999999999999999988789999999999853 4456666
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-55 Score=535.09 Aligned_cols=194 Identities=20% Similarity=0.328 Sum_probs=151.9
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+. ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 478899987763 23599999999999999999999999999999999996431 1379999999764
Q ss_pred Cc----ccccceEEEeccCCCCCCC--cCHHHHHHHHhhc--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000867 757 KQ----ETFTRISGYCEQNDIHSPF--VTVYESLLYSAWL--RLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGE 827 (1247)
Q Consensus 757 ~~----~~~~~~~~~v~q~~~~~~~--ltv~e~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~ 827 (1247)
.. ...++.+||++|++.++.. .|+++++.+...- ....... ...+++++++++.+|+.+ ..+..+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~----- 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF----- 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----
Confidence 22 1234568999998765432 5677766543210 1111111 223456889999999987 666665
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeccCC
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPS 890 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~ 890 (1247)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++++ .|||+++|++.
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~ 463 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE 463 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh
Confidence 4699999999999999999999999999999999999999999999987765 47999999985
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-53 Score=519.18 Aligned_cols=183 Identities=19% Similarity=0.253 Sum_probs=149.4
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 589999998763 23599999999999999999999999999999999998653 4799999872
Q ss_pred CcccccceEEEeccCCC--CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHH
Q 000867 757 KQETFTRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 757 ~~~~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgG 833 (1247)
+.+||++|+.. +.+.+|++|++.+.. .. . ..+++++++++.+|+. +..+..+ ..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCcc-----cccCHH
Confidence 45899999864 456799999986421 11 1 1134577899999994 5566655 469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||++||++|+.+|++|+|||||+|||+.+...+.+.|++. +.|||+++|++. .+-+..|+
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~ 504 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATR 504 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999876 359999999985 34444555
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=508.99 Aligned_cols=186 Identities=22% Similarity=0.311 Sum_probs=149.7
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECC-c-
Confidence 588999988763 24599999999999999999999999999999999998653 479999854 1
Q ss_pred CcccccceEEEeccCC-CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000867 757 KQETFTRISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESGLSTEQ 834 (1247)
Q Consensus 757 ~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGq 834 (1247)
..+||++|+. .+++.+||+|++.+....+. .... +...+++++.+|+.+ ..+..+ ..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999996 67788999999987643221 1111 122456899999964 445554 4699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 835 r~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||++||++|+.+|++|+|||||+|||+.+...+.+.|+++ .| |||+++|++. .+....|+
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~-tvi~vtHd~~-~~~~~~d~ 511 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF--PG-CAVVISHDRW-FLDRIATH 511 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CC-eEEEEECCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999986 24 8999999985 34445565
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-52 Score=448.80 Aligned_cols=430 Identities=25% Similarity=0.308 Sum_probs=326.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCCC--CCceeeEEEECCccCCCCcc-------cceEEEecccc--ccCCCCCHHHHHHH
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDS--KLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHD--VHIGEMTVRETLAF 70 (1247)
Q Consensus 2 ~~ivG~~GsGKSTLL~~L~G~~~~--~~~~~G~v~~~g~~~~~~~~-------~~~i~yv~Q~~--~~~~~lTv~e~l~f 70 (1247)
+||||.||||||-..+.++|+++. ....+|+|.++|+++-.... ..+|++++|+| .+-|--|+...|.-
T Consensus 39 lAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E 118 (534)
T COG4172 39 LALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAE 118 (534)
T ss_pred EEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHH
Confidence 699999999999999999999875 23468999999998743321 14799999996 34555677777766
Q ss_pred HHhccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCcccccccccc
Q 000867 71 SARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQK 150 (1247)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 150 (1247)
..+++.. +...+++..+.++|+..|+++..... +.++..||||||
T Consensus 119 ~l~~Hrg---------------------------------~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGGqR 163 (534)
T COG4172 119 VLRLHRG---------------------------------LSRAAARARALELLELVGIPEPEKRL--DAYPHELSGGQR 163 (534)
T ss_pred HHHHHhc---------------------------------ccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCcchh
Confidence 5554321 01122344567789999998765433 567889999999
Q ss_pred chhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCc
Q 000867 151 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1247)
Q Consensus 151 qRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~ 230 (1247)
|||.||+||+++|++|+-||||++||.....+|++.|+++.++ .+..++.|+|+..-+-+++|+|+||.+|++++.|+.
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~-~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t 242 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE-LGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTT 242 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH-hCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcH
Confidence 9999999999999999999999999999999999999998765 477888899999999999999999999999999976
Q ss_pred chHHHHHHhCCCCCCCCCChhhHHhhhcCchhhhhhhhccCCCCccCCHHHHHHHHhhchhhhhHHHhhcCCcccCCCCC
Q 000867 231 ELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQEFSEAFQSFTVGQKLADELRTPFDKCKSHP 310 (1247)
Q Consensus 231 ~~~~~~f~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1247)
+.+.. .|. ++
T Consensus 243 ~~lF~--------~Pq--------------------------------------------------------------Hp 252 (534)
T COG4172 243 ETLFA--------APQ--------------------------------------------------------------HP 252 (534)
T ss_pred HHHhh--------CCC--------------------------------------------------------------Ch
Confidence 55421 000 00
Q ss_pred cccccccccccHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccceehHHHHHHHHHH
Q 000867 311 AALTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTM 390 (1247)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~lf~~~~~~~~~~~~~~~~~g~~f~~i~~~~ 390 (1247)
| . |. +.
T Consensus 253 -------Y-----------T-r~--------------Ll----------------------------------------- 258 (534)
T COG4172 253 -------Y-----------T-RK--------------LL----------------------------------------- 258 (534)
T ss_pred -------H-----------H-HH--------------HH-----------------------------------------
Confidence 0 0 00 00
Q ss_pred HhhHHHHHHHhhcchhhHHhhccCCcchhhHHHHHHHHHhhHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHH
Q 000867 391 FNGMSDISMTIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTYYVIGFDPNIGRLFKQFLLLLLVNQM 470 (1247)
Q Consensus 391 ~~~~~~~~~~~~~~~v~~~~r~~~~y~~~~y~la~~l~~~p~~~~~~~~~~~i~Y~l~gl~~~~~~~~~~~l~~~l~~~~ 470 (1247)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccccccCCCccccchhhhhhCHHHHHHHHHHHhhcCCCccccccCCCC
Q 000867 471 ASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSWRKFTSNSN 550 (1247)
Q Consensus 471 ~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~~sp~~y~~~al~~~ef~~~~~~~~~~~~~ 550 (1247)
..
T Consensus 259 ---------------------------------------------------------------~a--------------- 260 (534)
T COG4172 259 ---------------------------------------------------------------AA--------------- 260 (534)
T ss_pred ---------------------------------------------------------------hc---------------
Confidence 00
Q ss_pred ccchHHHhhhcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeecCCcccccCCcCCCCcccccCCCC
Q 000867 551 ETLGVQVLKSRGFFPHAYWYWLGLGATIGFVLLFNIGFTLSLTFLNQFEKPRAVISDESESNDLGNRIGGTAQLSTHGSN 630 (1247)
Q Consensus 551 ~~~g~~~l~~~~~~~~~~~~w~~~~~li~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1247)
++.|
T Consensus 261 eP~g---------------------------------------------------------------------------- 264 (534)
T COG4172 261 EPSG---------------------------------------------------------------------------- 264 (534)
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCCCCCcccccccchhhhhhhhccccccccCcCCCCCccCCCCcEEEEEeEEEEEecCchhhhccccccccceeeceE
Q 000867 631 SSHKTCSESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVS 710 (1247)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs 710 (1247)
...+ ..+..+.-++.+|++..++.+...- +...+...++++||
T Consensus 265 ~~~p-----------------------------------~~~~~~~ll~~~~v~v~f~i~~g~~--~r~~~~~~AVd~is 307 (534)
T COG4172 265 DPPP-----------------------------------LPEDAPVLLEVEDLRVWFPIKGGFL--RRTVDHLRAVDGIS 307 (534)
T ss_pred CCCC-----------------------------------CCCCCCceEEecceEEEEecCCccc--cccchheEEeccce
Confidence 0000 0000123466666666655442211 11123457999999
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc------cccceEEEeccCCC--CCCCcCHHH
Q 000867 711 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE------TFTRISGYCEQNDI--HSPFVTVYE 782 (1247)
Q Consensus 711 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~~~v~q~~~--~~~~ltv~e 782 (1247)
+++++||.+||+|.||||||||-.+|.+.... +|+|.++|.++... ..++.+-.|+||+. +.|.+||.+
T Consensus 308 l~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~q 384 (534)
T COG4172 308 LTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQ 384 (534)
T ss_pred eEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHH
Confidence 99999999999999999999999999997753 49999999987532 34567788999974 678999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000867 783 SLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862 (1247)
Q Consensus 783 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~ 862 (1247)
-+.=+.....| ..+..++++++.++++++||.+..-. ..+.++|||||||++|||||+.+|++++||||||.||-
T Consensus 385 II~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~----RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~ 459 (534)
T COG4172 385 IIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRN----RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459 (534)
T ss_pred HhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhh----cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence 88766555433 56778899999999999999763221 12457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hCCCEEEEEeccCC
Q 000867 863 RAAAIVMRTVRNTV-DTGRTVVCTIHQPS 890 (1247)
Q Consensus 863 ~~~~~i~~~l~~~~-~~g~tvi~~~H~~~ 890 (1247)
.-+.+|+++|+++. +.|.+-++++||..
T Consensus 460 SVQaQvv~LLr~LQ~k~~LsYLFISHDL~ 488 (534)
T COG4172 460 SVQAQVLDLLRDLQQKHGLSYLFISHDLA 488 (534)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 99999999999986 45899999999974
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=505.41 Aligned_cols=186 Identities=20% Similarity=0.283 Sum_probs=149.5
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECCc--
Confidence 488999987763 24599999999999999999999999999999999998653 4799998541
Q ss_pred CcccccceEEEeccCC-CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000867 757 KQETFTRISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESGLSTEQ 834 (1247)
Q Consensus 757 ~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGq 834 (1247)
..+||++|+. .+++.+||.|++.+...... .... +..++++++.+|+.+ ..+..+ ..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999986 47788999999987642211 1111 123457899999964 456554 4699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 835 r~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++. .|||+++|++. .+-...|+
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~ 509 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATH 509 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999872 48999999985 34445565
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=504.40 Aligned_cols=183 Identities=23% Similarity=0.249 Sum_probs=152.2
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++ + ..|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----
Confidence 478888887653 1 248999999999999999999999999999999998653 47999885
Q ss_pred CcccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000867 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1247)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~ 836 (1247)
..++|++|+..+.+.+||+|++.+..... .. ...++++++.+++.+..+..++ .|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKNVK-----DLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHH
Confidence 14799999988888899999998642111 11 1246789999999887777654 69999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 837 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++||+.. +....|+
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~-~~~~aDr 523 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYM-IDYISDR 523 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCE
Confidence 999999999999999999999999999999999999998764 8999999999753 4445566
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=488.90 Aligned_cols=186 Identities=23% Similarity=0.328 Sum_probs=148.7
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++ ++.+|+|+|++|++||++||+|||||||||||++|+|..++ .+|+|.+ |.+
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~- 381 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTK- 381 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCC-
Confidence 488999988763 24599999999999999999999999999999999998653 4799988 432
Q ss_pred CcccccceEEEeccCC-CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHH
Q 000867 757 KQETFTRISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLSTEQ 834 (1247)
Q Consensus 757 ~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGq 834 (1247)
-.+||++|+. .+++.+||.|++.+.... . .... ....+.++++.+++. +..++.+ +.|||||
T Consensus 382 ------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~--~~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 382 ------LEVAYFDQHRAELDPEKTVMDNLAEGKQE-V--MVNG--RPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred ------cEEEEEeCcccccCCCCCHHHHHHhhccc-c--cccc--hHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 1479999975 578889999999765321 1 1111 123467889999985 4456655 3699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 835 r~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||+||++|+.+|++|||||||+|||..+...+.+.|++. +.|||+++|++. .+-...|+
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~ 506 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTE 506 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999999875 459999999975 23344554
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-49 Score=488.08 Aligned_cols=182 Identities=21% Similarity=0.332 Sum_probs=146.0
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.+.++|+++.++ ++.+|+|+|++|++||++||+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC--
Confidence 588999988763 24599999999999999999999999999999999998653 4799998641
Q ss_pred CcccccceEEEeccCC--CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHH
Q 000867 757 KQETFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 757 ~~~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgG 833 (1247)
..+||++|+. .+.+..|+.+++.- . .. ...++.+.++++.+++.. ..+..++ .||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEETR-----RFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCchh-----hCCHH
Confidence 2579999974 34456678776531 1 11 112345788999999963 5566653 69999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||+||++|+.+|++|+|||||+|||..+...+.+.|++. . .|||+++|++. .+-...|+
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~-~~~~~~d~ 496 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRH-LLRSTTDD 496 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999986 3 49999999985 34455565
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=460.95 Aligned_cols=197 Identities=25% Similarity=0.291 Sum_probs=149.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCcc
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRY 81 (1247)
Q Consensus 2 ~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~ 81 (1247)
++|||+|||||||||++|+|...|+ +|+|...+. -.++|++|++...+..||.+.+.-+..- .+
T Consensus 32 iGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~--------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~-----~~ 95 (530)
T COG0488 32 IGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG--------LRVGYLSQEPPLDPEKTVLDYVIEGFGE-----LR 95 (530)
T ss_pred EEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC--------ceEEEeCCCCCcCCCccHHHHHHhhhHH-----HH
Confidence 6899999999999999999999987 999988652 3699999999999899999999875421 11
Q ss_pred chhhHhhHHHHhcCCCCCCch---h-HHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 82 DMLTELARREKEAGIKPDPDI---D-VYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
....+...... ..++.+. . ........+.++.+..+..+|..+|++.. ++.+ .+||||||.||+||+
T Consensus 96 ~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~-----~~LSGG~r~Rv~LA~ 166 (530)
T COG0488 96 ELLAELEEAYA---LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPV-----SSLSGGWRRRVALAR 166 (530)
T ss_pred HHHHHHHHHHH---hcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCch-----hhcCHHHHHHHHHHH
Confidence 11111111110 0111111 1 11122234556667778889999999865 5444 479999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEE-Eec
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIV-YQG 228 (1247)
Q Consensus 158 al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~-~~G 228 (1247)
+|..+|++|+|||||++||..+..++-+.|+++ .+ ++++++|++...-+.|++|+-++.|++. |.|
T Consensus 167 aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 167 ALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence 999999999999999999999988888877753 45 6667999999999999999999999874 555
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=439.45 Aligned_cols=188 Identities=20% Similarity=0.358 Sum_probs=155.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc----cccceEEEeccC---CCCCCC
Q 000867 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFTRISGYCEQN---DIHSPF 777 (1247)
Q Consensus 705 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~---~~~~~~ 777 (1247)
.++|+||++++||++||-|-=|||+|-|+++|.|..+ ..+|+|.+||.+.... ..+.-++||+.| +-+++.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 5789999999999999999999999999999999654 3479999999986542 234468999987 557788
Q ss_pred cCHHHHHHHHhhccCC-C-CCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000867 778 VTVYESLLYSAWLRLP-P-EVDSETQKMFIEEIMELVELNPL-RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 854 (1247)
Q Consensus 778 ltv~e~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lD 854 (1247)
+++.||+.++...+.. . -.+....++.+++..+.|++... .+..+ ..||||.+|||.|||.|..+|+||+||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 9999999887332221 1 24455556678899999998543 22333 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhcC
Q 000867 855 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEG 900 (1247)
Q Consensus 855 EptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 900 (1247)
|||.|+|..+..+|.++|++++++|++||+++-+. .|+..+-|+.
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRI 471 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRI 471 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEE
Confidence 99999999999999999999999999999999876 4788888883
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=466.02 Aligned_cols=185 Identities=19% Similarity=0.266 Sum_probs=142.3
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++ +++.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.+++
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~--- 570 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSA--- 570 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECC---
Confidence 588999998763 123599999999999999999999999999999999998653 479998865
Q ss_pred CcccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHH
Q 000867 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGqr 835 (1247)
+..+||++|+. .+.+++.++.........+ ... ++.+.++++.+|+.+ ..+..+ ..||||||
T Consensus 571 -----~~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqk 633 (718)
T PLN03073 571 -----KVRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPM-----YTLSGGQK 633 (718)
T ss_pred -----ceeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCc-----cccCHHHH
Confidence 23589999985 2445666654322111111 111 234678999999974 445544 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 836 ~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||+||++|+.+|++|+|||||+|||+.+...+.+.|++. + .|||+++|++.. +-...|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~~-i~~~~dr 693 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEHL-ISGSVDE 693 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHHH-HHHhCCE
Confidence 9999999999999999999999999999999998888764 3 499999999853 3344555
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=396.79 Aligned_cols=205 Identities=20% Similarity=0.324 Sum_probs=164.6
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|++...+. ....+++|||++++||++||.|-.|-|-+-|+.+|+|..+. .+|+|.++|.+
T Consensus 256 ~vL~V~~L~v~~~~------------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~ 321 (501)
T COG3845 256 VVLEVEDLSVKDRR------------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKD 321 (501)
T ss_pred eEEEEeeeEeecCC------------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEe
Confidence 45778888765321 24589999999999999999999999999999999997653 35999999998
Q ss_pred C----Cccc-ccceEEEeccCCC---CCCCcCHHHHHHHHhhccCC----CCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 000867 756 K----KQET-FTRISGYCEQNDI---HSPFVTVYESLLYSAWLRLP----PEVDSETQKMFIEEIMELVELNPLRQSLVG 823 (1247)
Q Consensus 756 ~----~~~~-~~~~~~~v~q~~~---~~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g 823 (1247)
. +... .+.-++|||+|-. +.+.+|+.||+.+...-+.| .-.+....++...++++.++.....-..
T Consensus 322 v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~-- 399 (501)
T COG3845 322 VLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA-- 399 (501)
T ss_pred ccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc--
Confidence 6 2222 2345799999853 45789999999776432211 1244566677888999999886332111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 824 ~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
..+.||||+.||+-+||+|.++|++|+..+||-|||..+...|.+.|.+.+++|+.|++++-+.. |++++-|+
T Consensus 400 --~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDr 472 (501)
T COG3845 400 --PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDR 472 (501)
T ss_pred --chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhhe
Confidence 13579999999999999999999999999999999999999999999999999999999999875 78999998
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=342.72 Aligned_cols=192 Identities=25% Similarity=0.369 Sum_probs=169.2
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|++.++. +..+|+|||++|++||+++|+|||||||||||+||.+... +.+|+|.++|.++.
T Consensus 3 i~i~~l~K~fg-------------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSFG-------------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEeC-------------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 67888877653 4679999999999999999999999999999999999876 34899999997653
Q ss_pred c----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000867 758 Q----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 758 ~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 833 (1247)
. ...|+.+|+|+|+..+||.+||.||+..+-..- ...++++.+++..++|+.+||.+.+|.+. ..||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcH
Confidence 2 346778999999999999999999998864321 24456777778899999999999999885 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCCh
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 891 (1247)
|||||+|||||+.+|+++++|||||.|||+...++.+.+++++++|.|.|++||+...
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F 198 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF 198 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH
Confidence 9999999999999999999999999999999999999999999999999999998753
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=340.52 Aligned_cols=191 Identities=23% Similarity=0.350 Sum_probs=164.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCC----CcccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE----FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~----~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1247)
.++|+|||||||||||++|.|+.+++ +|+|.++|.++.. ...|+.+|+|+|+..+||.+||.||+..+...-
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v- 105 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV- 105 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH-
Confidence 37899999999999999999999987 9999999976532 124678999999999999999999999874210
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
.. ...+++++...++|+.+||.+.+| .++..|||||||||+||
T Consensus 106 --------~~------------------------~~k~eA~~~A~~lL~~VGL~~ka~-----~yP~qLSGGQqQRVAIA 148 (240)
T COG1126 106 --------KK------------------------LSKAEAREKALELLEKVGLADKAD-----AYPAQLSGGQQQRVAIA 148 (240)
T ss_pred --------cC------------------------CCHHHHHHHHHHHHHHcCchhhhh-----hCccccCcHHHHHHHHH
Confidence 00 112334556678999999998765 56778999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||+.+|+++++|||||+|||+...++++.++++++. +.|.+.+||.+..+.+.+|||+.|++|++++.|++++..
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e--GmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc--CCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999864 567777899999999999999999999999999888763
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=338.60 Aligned_cols=197 Identities=26% Similarity=0.387 Sum_probs=171.7
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.+.++++++++. ...+|+|+|++|++||+++|+||||||||||||+|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccc
Confidence 467888877764 25699999999999999999999999999999999998774 489999999887
Q ss_pred CcccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000867 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1247)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~ 836 (1247)
.. ....+|||+|++.++|.+||+||+.++...+. .+.++++++++++++.+||.+..|.+. .+|||||||
T Consensus 68 ~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQ 137 (248)
T COG1116 68 TG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQ 137 (248)
T ss_pred CC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHH
Confidence 32 34568999999999999999999999876653 345556678999999999999998874 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeccCChHHHHhhhc
Q 000867 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 837 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||+|||||+.+|+||+||||++.||+.|+..+++.|.++. +.++||+++||+....++ +-|+
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~-LsdR 200 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVY-LADR 200 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHh-hhCE
Confidence 9999999999999999999999999999999999999976 458999999999975544 6676
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=338.40 Aligned_cols=185 Identities=29% Similarity=0.412 Sum_probs=158.5
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc-------cccceEEEeccCCCCC
Q 000867 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TFTRISGYCEQNDIHS 775 (1247)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~~~v~q~~~~~ 775 (1247)
..+|+++|++|++||+++|+|||||||||||++|.|...+ .+|.+.++|.+.... .+++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 5799999999999999999999999999999999998764 589999999876431 2345699999999999
Q ss_pred CCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000867 776 PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ-SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 854 (1247)
Q Consensus 776 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~-~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lD 854 (1247)
|++||+||+.....+... +....+++++++++.+||.+..+ ..+ ..|||||||||+|||||+.+|++++.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~p-----~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKKP-----SELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCCc-----hhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 999999999987655432 22245667889999999987665 443 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 855 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 855 EptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||.+||++++..|++.++++.++ |+|||++||+|. +-+..|+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr 211 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADR 211 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCE
Confidence 999999999999999999999765 899999999985 4556776
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=340.39 Aligned_cols=200 Identities=27% Similarity=0.455 Sum_probs=170.6
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++ .+ ++|+|||+++++|++++|+||||||||||+|+|.|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 588999999875 12 59999999999999999999999999999999999765 3589999999887
Q ss_pred CcccccceEEEeccCCC---CCCCcCHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 757 KQETFTRISGYCEQNDI---HSPFVTVYESLLYSAWLRLP--PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 757 ~~~~~~~~~~~v~q~~~---~~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
....-+..+|||||... -+| +||+|-+..+..-+.. .... +..++.++++|+.+|+.+.+|..+| .||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LS 141 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELS 141 (254)
T ss_pred cccccCCeEEEcCcccccCCCCC-cCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccC
Confidence 65444568999999643 233 7999999876332221 1122 3336779999999999999999987 599
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||+|||.|||||+++|++|+|||||+|+|+.++..+.++|+++.++|+||++++||++ .+.+.||+
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~ 208 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDR 208 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCE
Confidence 99999999999999999999999999999999999999999999988999999999997 57788998
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=332.08 Aligned_cols=194 Identities=25% Similarity=0.372 Sum_probs=170.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
+++++|||||||||+||+|.++++|+ +|+|.+||+++.+.. .||.||||-|+..+||++||.|||..-..++++
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w 105 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW 105 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCC
Confidence 47899999999999999999999998 999999999987643 468999999999999999999999997776543
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
.+ ++.+.+++++|+.+||+.. ..+++.++.|||||+|||.+||
T Consensus 106 ~k----------------------------------~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 106 DK----------------------------------ERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred CH----------------------------------HHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHHHHHH
Confidence 21 1233457889999999753 2457889999999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 158 al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
||+.+|+|+++|||+++|||-++.++-+.++++.+.. ++||+.+||+.+|+.+++|||++|++|+++..+++++++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l-~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999999999886655 5667779999999999999999999999999999999874
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=359.16 Aligned_cols=200 Identities=32% Similarity=0.446 Sum_probs=174.6
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|++..+. .++.+|+||||+|++||++|++||||||||||+|+|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~ 69 (293)
T COG1131 4 VIEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDV 69 (293)
T ss_pred eeeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeC
Confidence 356677776553 136799999999999999999999999999999999998764 589999999887
Q ss_pred Cc--ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000867 757 KQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1247)
Q Consensus 757 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 834 (1247)
.. ...++.+||++|++.+++.+||+|+|.|.+.++.+.. +..+++++++++.+||.+..++.+ ++||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHH
Confidence 64 3567789999999999999999999999999886533 445567999999999998665555 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeccCChHHHHhhhc
Q 000867 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 835 r~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||++||+||+++|+++||||||+|||+.++..+++.|++++++| +||+++||+++ ++.+++|+
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~ 206 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDR 206 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999887 89999999996 56667887
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=315.65 Aligned_cols=190 Identities=27% Similarity=0.363 Sum_probs=167.3
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++|+|++..|. +++++|+||||+|++||++-|+||||||||||||+|.+... +..|+|.++|.++.
T Consensus 2 I~f~~V~k~Y~------------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYP------------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcC------------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 56777765543 33679999999999999999999999999999999999765 34899999999875
Q ss_pred c------ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 758 Q------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 758 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
. ...+|.+|+|+||..+.+..||.||+.|..... ..+..+.+++|.++|+.+||.+.++... ..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALP-----SQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCc-----cccC
Confidence 3 135788999999999999999999999986654 3445667788999999999999887764 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccC
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 889 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 889 (1247)
|||+|||+||||++.+|++|+.||||.+||+..+..|++++.++.+.|.||++.||+.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~ 197 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL 197 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH
Confidence 9999999999999999999999999999999999999999999988899999999985
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=341.46 Aligned_cols=191 Identities=25% Similarity=0.322 Sum_probs=168.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1247)
+.+|+|+||||||||+++|.++..|+ +|+|.++|+++.... .|+.||+++|+..++.+.||.||+.|..++
T Consensus 34 I~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLei 110 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLEL 110 (339)
T ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhh
Confidence 46899999999999999999999998 999999998875432 257899999999999999999999998776
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
.+.. +.+.+.++.++|+.+||++..+ +++.+|||||||||+
T Consensus 111 ag~~----------------------------------k~ei~~RV~elLelVgL~dk~~-----~yP~qLSGGQKQRVa 151 (339)
T COG1135 111 AGVP----------------------------------KAEIKQRVAELLELVGLSDKAD-----RYPAQLSGGQKQRVA 151 (339)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHcCChhhhc-----cCchhcCcchhhHHH
Confidence 5421 1234456788999999997654 567799999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||||+.+|+|||+|||||+|||++...|++.|+++.++. +.||++++|.++-+-+.||||.+|++|++++.|+..++.
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-glTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999999999999999999999987754 677888999999999999999999999999999988874
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=337.90 Aligned_cols=195 Identities=25% Similarity=0.335 Sum_probs=170.1
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
+++++++..+... ..+...+|+|||++|++||++||+|+||||||||++++.+...+ .+|+|.+||.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecc
Confidence 5678887555321 11235799999999999999999999999999999999998764 4899999997764
Q ss_pred c------ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 758 Q------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 758 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
. ...|+.+|+++|+..++...||.||+.|...+.. .++++.+++|.++++.+||.+.++.+. .+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYP-----AQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCc-----hhcC
Confidence 3 3457789999999999999999999999876653 567888899999999999999988875 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCC
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 890 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 890 (1247)
|||||||+|||||+.+|+||++|||||.|||++...|.+.|+++.++ |.||++++|++.
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~ 203 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME 203 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 99999999999999999999999999999999999999999998655 999999999974
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=352.68 Aligned_cols=179 Identities=22% Similarity=0.261 Sum_probs=134.2
Q ss_pred CcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCc
Q 000867 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1247)
Q Consensus 675 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 754 (1247)
+..+.++|+++.++. +..++++++|-|.+++.+|++||||+|||||||++.|...+ ..|.|.-.-+
T Consensus 387 ~pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--cccccccccc
Confidence 356889999887642 22689999999999999999999999999999999997653 3566643322
Q ss_pred cCCcccccceEEEeccC--CCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 755 PKKQETFTRISGYCEQN--DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 755 ~~~~~~~~~~~~~v~q~--~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
. ..++..|. +.+.-..++.|+++=.. +. +.+.+.+..++..+||....+... .+.||+
T Consensus 453 ~--------~~~~y~Qh~~e~ldl~~s~le~~~~~~----~~----~~~~e~~r~ilgrfgLtgd~q~~p----~~~LS~ 512 (614)
T KOG0927|consen 453 N--------KLPRYNQHLAEQLDLDKSSLEFMMPKF----PD----EKELEEMRSILGRFGLTGDAQVVP----MSQLSD 512 (614)
T ss_pred c--------cchhhhhhhHhhcCcchhHHHHHHHhc----cc----cchHHHHHHHHHHhCCCccccccc----hhhccc
Confidence 1 12233333 22333466777664211 11 233455788999999985544432 357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCC
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1247)
|||+||..|+.++..|.+|+|||||+|||..+...+.+.|.+. ..+||+++||-.
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr 567 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR 567 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh
Confidence 9999999999999999999999999999999999999999875 358999999864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=336.57 Aligned_cols=193 Identities=27% Similarity=0.453 Sum_probs=165.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCc---cCCCC-cccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH---GMDEF-VPQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~---~~~~~-~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1247)
++|++|||||||||||++|+|+..|+ +|.|.+||+ |.... ...|+||||+|+..+|+.+||.|||.||.+++.
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~ 106 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK 106 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc
Confidence 47999999999999999999999998 999999999 55542 234889999999999999999999999986541
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
.+ | +..+.+..+.++|+.+.|+. ++++++.+|||||||||+||
T Consensus 107 --~~-----------------p-------------~~~~~r~rv~elL~lvqL~~-----la~ryP~QLSGGQrQRVALA 149 (345)
T COG1118 107 --ER-----------------P-------------SEAEIRARVEELLRLVQLEG-----LADRYPAQLSGGQRQRVALA 149 (345)
T ss_pred --cC-----------------C-------------ChhhHHHHHHHHHHHhcccc-----hhhcCchhcChHHHHHHHHH
Confidence 00 0 01223445777888888864 45688899999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||+..|++||||||+++||++.+.++-.+|++..... +.+.+.++|+..+++++||||++|++|+|...|+++++.
T Consensus 150 RALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~-~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 150 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRL-GVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhh-CceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 99999999999999999999999999999999976654 455566899999999999999999999999999999874
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=329.79 Aligned_cols=177 Identities=25% Similarity=0.363 Sum_probs=154.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1247)
+++|+||||||||||||+|+|+.+|+ +|+|.++|+++. .+.+.++||+|++.++|.+||+||+.++.+..+..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~-- 103 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKS-- 103 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHHhhheehhhccccc--
Confidence 47999999999999999999999997 999999999873 34568999999999999999999999987754311
Q ss_pred cchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHHh
Q 000867 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1247)
..+.++.++++|+.+||.... ++.++.|||||||||+|||||+
T Consensus 104 --------------------------------~~e~~~~a~~~L~~VgL~~~~-----~~~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 104 --------------------------------KAEARERAKELLELVGLAGFE-----DKYPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred --------------------------------hHhHHHHHHHHHHHcCCcchh-----hcCccccChHHHHHHHHHHHHh
Confidence 112233577899999998765 4678899999999999999999
Q ss_pred cCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCC
Q 000867 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDA 222 (1247)
Q Consensus 161 ~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G 222 (1247)
.+|++|+||||+++||+.|+.++.+.+.++.+.. +.|++.+||+.+|+..++|||++|.++
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~-~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEET-RKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999999999999999999999887754 567777999999999999999999984
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=350.11 Aligned_cols=203 Identities=29% Similarity=0.400 Sum_probs=174.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++++..+ +|.+|+|+|+..++|++||+|||.|+.+.++..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~- 106 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVP- 106 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCc-
Confidence 36899999999999999999999997 9999999999987654 488999999999999999999999998765421
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
.++.+++++++.+.|+|++.. ++.+.+|||||||||+|||||
T Consensus 107 ---------------------------------k~ei~~rV~eva~~L~l~~lL-----~r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 107 ---------------------------------KAEIDKRVKEVAKLLGLEHLL-----NRKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred ---------------------------------hHHHHHHHHHHHHHcCChhHH-----hcCcccCChhhHHHHHHHHHH
Confidence 122344577889999997655 466778999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHHHHHh
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFES 239 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~~f~~ 239 (1247)
+.+|+++|||||+|.||+..+.++...++++.+. -++|++.+||+..|+..++|||++|++|++...|++.++.
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~-l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely----- 222 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER-LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY----- 222 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh-cCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh-----
Confidence 9999999999999999999999999999987554 4677778999999999999999999999999999999985
Q ss_pred CCCCCCCCCChhhHH
Q 000867 240 MGFKCPERKGVADFL 254 (1247)
Q Consensus 240 ~G~~~~~~~~~~~~~ 254 (1247)
..|.+.-.+.|+
T Consensus 223 ---~~P~n~fVA~Fi 234 (338)
T COG3839 223 ---ERPANLFVAGFI 234 (338)
T ss_pred ---hCccchhhhhhc
Confidence 345544455554
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=321.25 Aligned_cols=198 Identities=27% Similarity=0.384 Sum_probs=174.4
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++|+|++..+. .+.+++|+|++|++||++.++|||||||||+|++|.+...+ .+|+|.+||.++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecc
Confidence 56888876553 45699999999999999999999999999999999998764 4899999999876
Q ss_pred c---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCH
Q 000867 758 Q---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP--LRQSLVGLPGESGLST 832 (1247)
Q Consensus 758 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~~g~~~~~~lSg 832 (1247)
. ...||.+|||-|.-.+||++||.||+.+.-.+. ..++++.+++++++++.+||.+ +.+++ +.+|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 357889999999999999999999998765543 4567888889999999999975 56665 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||+|||.+||||+.+|+||++|||++.||+.++..+++.++++.++ |+|||++|||.. |.+++-|+
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadr 205 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADR 205 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhce
Confidence 9999999999999999999999999999999999999999998755 999999999986 56778888
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=319.13 Aligned_cols=201 Identities=27% Similarity=0.378 Sum_probs=172.8
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..+++++++.+. +.+.|++||+++|++||+++||||||+||||||+.|.|...+ .+|+|.++|.+
T Consensus 7 ~~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~ 71 (263)
T COG1127 7 PLIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGED 71 (263)
T ss_pred ceEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcc
Confidence 468899988765 356799999999999999999999999999999999998774 48999999998
Q ss_pred CCc------ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCC
Q 000867 756 KKQ------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-RQSLVGLPGES 828 (1247)
Q Consensus 756 ~~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~ 828 (1247)
+.+ ...++++|+++|+.++|..+||+||+.|..+ .....+++..++.+..-++.+||... .+.. +.
T Consensus 72 i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----Ps 144 (263)
T COG1127 72 IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PS 144 (263)
T ss_pred hhccCHHHHHHHHhheeEEeeccccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----ch
Confidence 643 1346679999999999999999999988643 33345667777788888999999876 5554 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+||||+|||+++|||++.+|+|+|+||||+||||.++..+-++|+++.++ |.|+|++|||.. +++..-|+
T Consensus 145 ELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Dr 215 (263)
T COG1127 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADR 215 (263)
T ss_pred hhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhce
Confidence 79999999999999999999999999999999999999999999999766 899999999986 46666666
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=311.89 Aligned_cols=195 Identities=24% Similarity=0.343 Sum_probs=166.4
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC---CCCeEEEEEEEc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITIS 752 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~---~~~~~~G~i~i~ 752 (1247)
..++.+|+++.+. ++.+|+|||+.|++++++|++|||||||||||++|.... ++-.++|+|.++
T Consensus 6 ~~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~ 72 (253)
T COG1117 6 PAIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLD 72 (253)
T ss_pred ceeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEEC
Confidence 4578889988764 467999999999999999999999999999999999853 334688999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCC
Q 000867 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-RQSLVGLPG 826 (1247)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~ 826 (1247)
|.++-. ...||.+|.|+|.+.-|| +|++||+.|+.++....+ ++.++.|+..|+...|++- +|.+-. .
T Consensus 73 g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~--s 146 (253)
T COG1117 73 GKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHK--S 146 (253)
T ss_pred CeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhC--C
Confidence 998643 346788999999999999 999999999987654322 6677889999999999864 344422 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCC
Q 000867 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 827 ~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1247)
..+|||||+|||||||||+.+|+||+||||||+|||.+...|-+++.+++ +.-|||++||.+.
T Consensus 147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq 209 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ 209 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH
Confidence 35799999999999999999999999999999999999999999999987 5689999999874
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=306.73 Aligned_cols=191 Identities=22% Similarity=0.330 Sum_probs=163.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
++||+||||||||||||+|+|...|. +|+|++||++..... .+|-+++++|++.+|..+||.+|+.++.. ++-
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~---P~L 100 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS---PGL 100 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC---ccc
Confidence 48999999999999999999999997 999999999986543 35789999999999999999999988632 110
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
+ + ..+.++.++.++..+||..+.+ +.+.+|||||||||+|||+|
T Consensus 101 k------L-------------------------~a~~r~~v~~aa~~vGl~~~~~-----RLP~~LSGGqRQRvALARcl 144 (231)
T COG3840 101 K------L-------------------------NAEQREKVEAAAAQVGLAGFLK-----RLPGELSGGQRQRVALARCL 144 (231)
T ss_pred c------c-------------------------CHHHHHHHHHHHHHhChhhHhh-----hCccccCchHHHHHHHHHHH
Confidence 0 0 1123345778899999987654 55678999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
+++-+|++||||+|+||+.-+.+....+.+++.+. +.|+++++|+.+++.+++|+++++++|+|.++|+.++..
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~-~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDER-KMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 99999999999999999999999999999988764 566777888899999999999999999999999887764
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=364.00 Aligned_cols=202 Identities=23% Similarity=0.349 Sum_probs=171.4
Q ss_pred CcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCc
Q 000867 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1247)
Q Consensus 675 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 754 (1247)
...++++|++..++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 926 ~~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~ 992 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGK 992 (2272)
T ss_pred CceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCE
Confidence 347899999887631 135699999999999999999999999999999999998763 4899999998
Q ss_pred cCCc--ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 755 PKKQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 755 ~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
++.. ...++.+|||+|++.+++.+||+|++.|.+.++. .+.++.+++++++++.+||.+..+..++ .|||
T Consensus 993 dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSG 1064 (2272)
T TIGR01257 993 DIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSG 1064 (2272)
T ss_pred ECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 8753 2345679999999999999999999999876652 2233445678899999999988887764 6999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||+||+||+.+|+|++|||||+|||+.+++.+++.|+++. +|+|||+++|++. ++-.+.|+
T Consensus 1065 GqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDr 1129 (2272)
T TIGR01257 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDR 1129 (2272)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999984 6999999999985 34445566
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=333.61 Aligned_cols=202 Identities=27% Similarity=0.400 Sum_probs=169.9
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++.+|+++.++ ++.+|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.+||.++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCch
Confidence 367899998874 35799999999999999999999999999999999997663 479999999987
Q ss_pred Cc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-EVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
.. +.+.|.+|||||.......+||+|-+.++..-.... ....++.++.++++++.+|+.+.+++.+. .|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccCh
Confidence 54 456778999999998888899999998774321111 11123344578999999999999999874 6999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||+.|||||+++|+||+||||||.||...+.+++++++++. ++|+|||+++||++.. ...-|+
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A-~ryad~ 208 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLA-ARYADH 208 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HHhCCE
Confidence 99999999999999999999999999999999999999999998 4599999999999743 233444
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=344.14 Aligned_cols=199 Identities=28% Similarity=0.403 Sum_probs=176.9
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|++..+. ...+|+|+|++|++||.++|+|||||||||||++|+|... +.+|+|.|+|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 578888887663 1129999999999999999999999999999999999876 4589999999988
Q ss_pred Cc-ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000867 757 KQ-ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 757 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
+. ...+|.+|+|+|+..+||.|||+||+.|+.+.+ ..++++.+++|+++.+.|+|.+..|++. ++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhH
Confidence 75 345688999999999999999999999998766 3456777889999999999999999885 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 836 ~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||+|||||+++|++++||||.|+||+..+..+...|+++.++ |.|+|.+|||.. |...+.|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladr 203 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADR 203 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCE
Confidence 9999999999999999999999999999999999999998755 899999999984 67778888
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=316.12 Aligned_cols=204 Identities=26% Similarity=0.305 Sum_probs=169.9
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|++..++ +++++|+|||++|++||++||+|||||||||||++|.|..+ +.+|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 478899887663 35679999999999999999999999999999999999765 4589999999765
Q ss_pred Cc------ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCC-----CCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000867 757 KQ------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-----PEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825 (1247)
Q Consensus 757 ~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~ 825 (1247)
.. .++++.+||++|+..+.+.++|.+|+..+..-+.+ .....++.+..+-+.|+.+|+.+.+....+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc--
Confidence 43 24577899999999999999999999865322211 112223445567789999999998877764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccCChHHHHhhhcC
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEG 900 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~~ 900 (1247)
.|||||+|||+|||||+.+|+|++.|||+++||+.+++.+|+.|+++.+ +|.|||++.||... .-+.+|+.
T Consensus 147 ---~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Ri 218 (258)
T COG3638 147 ---TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRI 218 (258)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhh
Confidence 6999999999999999999999999999999999999999999999874 58999999999864 33566773
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=317.52 Aligned_cols=194 Identities=26% Similarity=0.370 Sum_probs=164.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1247)
+++|+|||||||||||++|.|+++|+ +|+|.++|+++.... .++++|+++|+..+|.++||+||+.|..+-
T Consensus 36 i~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre 112 (263)
T COG1127 36 ILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE 112 (263)
T ss_pred EEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh
Confidence 47999999999999999999999998 999999999875432 246899999999999999999999995432
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
+. + + ++...++.+..-|+.+||... +++.++.+||||+|||++
T Consensus 113 ~~-----~----l------------------------p~~~i~~lv~~KL~~VGL~~~----~~~~~PsELSGGM~KRva 155 (263)
T COG1127 113 HT-----K----L------------------------PESLIRELVLMKLELVGLRGA----AADLYPSELSGGMRKRVA 155 (263)
T ss_pred hc-----c----C------------------------CHHHHHHHHHHHHHhcCCChh----hhhhCchhhcchHHHHHH
Confidence 11 0 0 111233345556888999753 346778899999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
||||++.+|+++++||||+||||.++..+.++++++.+.. +.|++++||+.++++..||++++|.+|+|+..|+++++.
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~l-g~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL-GLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhh-CCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999987765 556666999999999999999999999999999999986
Q ss_pred H
Q 000867 235 D 235 (1247)
Q Consensus 235 ~ 235 (1247)
+
T Consensus 235 ~ 235 (263)
T COG1127 235 A 235 (263)
T ss_pred h
Confidence 4
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=348.75 Aligned_cols=206 Identities=28% Similarity=0.411 Sum_probs=177.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++++|||||||||||++|+|...|+ +|+|.++|+++....+ +|.+++|+|+..+||+|||+|||.|+.+.+...
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~- 108 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKL- 108 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCC-
Confidence 46899999999999999999999998 9999999999987554 588999999999999999999999997643210
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
...+.+.+++++|+.++|++.. ++++..|||||||||+|||||
T Consensus 109 --------------------------------~~~~i~~rv~e~L~lV~L~~~~-----~R~p~qLSGGQqQRVALARAL 151 (352)
T COG3842 109 --------------------------------KKAEIKARVEEALELVGLEGFA-----DRKPHQLSGGQQQRVALARAL 151 (352)
T ss_pred --------------------------------CHHHHHHHHHHHHHHcCchhhh-----hhChhhhChHHHHHHHHHHHh
Confidence 0122345678899999998644 577889999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHHHHHh
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFES 239 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~~f~~ 239 (1247)
+.+|++||||||.|+||..-+.++...++++.+.. +.+.+.+||+-.|+..++|||++|++|++...|+++++-
T Consensus 152 ~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY----- 225 (352)
T COG3842 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIY----- 225 (352)
T ss_pred hcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHh-----
Confidence 99999999999999999999999999999987765 666777999999999999999999999999999999983
Q ss_pred CCCCCCCCCChhhHHhh
Q 000867 240 MGFKCPERKGVADFLQE 256 (1247)
Q Consensus 240 ~G~~~~~~~~~~~~~~~ 256 (1247)
..|...-.++|+-+
T Consensus 226 ---~~P~~~fVA~FiG~ 239 (352)
T COG3842 226 ---ERPATRFVADFIGE 239 (352)
T ss_pred ---hCcchHHHHHHhCc
Confidence 45665566677653
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=325.58 Aligned_cols=189 Identities=30% Similarity=0.443 Sum_probs=170.3
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCc---cCCc-ccccceEEEeccCCCCCCC
Q 000867 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQ-ETFTRISGYCEQNDIHSPF 777 (1247)
Q Consensus 702 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~~~v~q~~~~~~~ 777 (1247)
...+++|||++|+.||++|++|||||||||||++|+|...+ ..|.|.+||. +.+. ....|.+|||+|+..+|+.
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 45689999999999999999999999999999999998774 4899999999 5544 3446789999999999999
Q ss_pred cCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000867 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 857 (1247)
Q Consensus 778 ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpt 857 (1247)
|||.||+.|+.+++ ...++..+.+.+++++|+.+.|++..+.+. ..|||||||||++||||+..|++|+||||.
T Consensus 92 mtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred chHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCc-----hhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 99999999998777 344566777889999999999999988874 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 858 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 858 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++||..-+..+.+-|+++.++ |.|++++|||+. +.++++|+
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladr 207 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADR 207 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcce
Confidence 999999999999999998755 999999999985 78999998
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=331.90 Aligned_cols=195 Identities=31% Similarity=0.434 Sum_probs=164.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~---~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
+++|+||||||||||||+|+|.++|. +|+|.++|+++.+... .+.+|||||.+...+.+||+|-+.+|..=+.
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~- 105 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHL- 105 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccc-
Confidence 48999999999999999999999987 9999999999876543 3789999999888889999999998742100
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
..+. . ..++.++.+++.|+.+|+.+.++. .+..|||||||||.|||
T Consensus 106 -~~~~---~-------------------------~~~~D~~~v~~aL~~~~~~~la~r-----~~~~LSGGerQrv~iAr 151 (258)
T COG1120 106 -GLFG---R-------------------------PSKEDEEIVEEALELLGLEHLADR-----PVDELSGGERQRVLIAR 151 (258)
T ss_pred -cccc---C-------------------------CCHhHHHHHHHHHHHhCcHHHhcC-----cccccChhHHHHHHHHH
Confidence 0000 0 011223357788999999877764 45579999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 158 al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
||+++|+|++||||||+||...+.++++.++++.++ ++.+++++.|+.+.+..+||++++|++|+++.+|++++++
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~-~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE-KGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999999999999999999865 4667777999999999999999999999999999988765
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=306.31 Aligned_cols=185 Identities=30% Similarity=0.364 Sum_probs=167.6
Q ss_pred ceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC--cccccceEEEeccCCCCCCCcCHH
Q 000867 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK--QETFTRISGYCEQNDIHSPFVTVY 781 (1247)
Q Consensus 704 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~--~~~~~~~~~~v~q~~~~~~~ltv~ 781 (1247)
++++||||+++.||++||+|+|||||||+|++|++...+ .+|.|++||.+.. +...++.+|.++.+--++..||++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 489999999999999999999999999999999998764 4899999999864 345678899999888899999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000867 782 ESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861 (1247)
Q Consensus 782 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD 861 (1247)
|||.|.+.+. +....+.+++++++.+.|+|.++.|+.+| ++|.|+||||+|||||+++|++++|||||||||
T Consensus 94 Enl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 9999998875 45566778889999999999999999987 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 862 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 862 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
..+.+.+.+.++++.++|++||+++|..+ ++-.+.|+
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDr 202 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDR 202 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhhe
Confidence 99999999999999888999999999874 56667777
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=343.38 Aligned_cols=195 Identities=32% Similarity=0.448 Sum_probs=169.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCC--CcccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE--FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~--~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+++++||||||||||+|+|+|++.|+ +|+|.++|.+... ...++.+||++|++.+++.+||+||+.|.+.+++..
T Consensus 33 i~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~ 109 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS 109 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC
Confidence 47999999999999999999999997 9999999988754 344678999999999999999999999998876431
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
. ...+..++++++.+||++.. ++.+++||+|||||++||+|
T Consensus 110 ~----------------------------------~~~~~~~~~~l~~~~L~~~~-----~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 110 K----------------------------------EEAEERIEELLELFGLEDKA-----NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred h----------------------------------hHHHHHHHHHHHHcCCchhh-----CcchhhcCHHHHHHHHHHHH
Confidence 1 01223467899999998733 34566899999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHHHHH
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFE 238 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~~f~ 238 (1247)
|+++|+++||||||+|||+.++.++++.|+++++. ++++|++++|..+++..+||+|++|++|++++.|+.+++...+.
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhc
Confidence 99999999999999999999999999999998764 44677778999999999999999999999999999988776544
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=307.90 Aligned_cols=207 Identities=23% Similarity=0.363 Sum_probs=159.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCC--CCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD--SKLKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~--~~~~~~G~v~~~g~~~~~~-----~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+||++|||||||||||+++....+ |..+++|+|.++|+++.+. ..|+.+|+|+|.|.-|| +|++||+.|+.+
T Consensus 35 VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r 113 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLR 113 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHH
Confidence 589999999999999999988755 4567899999999988543 34689999999999888 899999999998
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
+++..+ + ++ +..++.+.. ...+.|++-++| ++...+||||||||+
T Consensus 114 ~~g~~~--~---~l---------------deiVe~sLk----~AaLWdEVKDrL-----------~~sa~~LSGGQQQRL 158 (253)
T COG1117 114 LHGIKD--K---EL---------------DEIVESSLK----KAALWDEVKDRL-----------HKSALGLSGGQQQRL 158 (253)
T ss_pred hhccch--H---HH---------------HHHHHHHHH----HhHhHHHhHHHh-----------hCCccCCChhHHHHH
Confidence 876421 1 11 001110000 001122222222 233457999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+|||||+-+|+|||||||||+|||.+..+|-+++.++.+ .-||+++||.+.++.+..|+..++..|++++.|+++++
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 999999999999999999999999999999999998753 45677799999999999999999999999999999887
Q ss_pred HHHHHhCCCCCCCCCChhhHH
Q 000867 234 LDFFESMGFKCPERKGVADFL 254 (1247)
Q Consensus 234 ~~~f~~~G~~~~~~~~~~~~~ 254 (1247)
. ..|.++...||+
T Consensus 236 F--------~~P~~~~TedYi 248 (253)
T COG1117 236 F--------TNPKHKRTEDYI 248 (253)
T ss_pred h--------cCccHHHHHHHh
Confidence 4 345554444443
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=338.27 Aligned_cols=201 Identities=27% Similarity=0.390 Sum_probs=177.2
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|++.++. +..+++|+|++|++||.++++|||||||||||++|+|...+ .+|+|.++|.+
T Consensus 4 ~~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I~l~G~~ 68 (352)
T COG3842 4 PALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGED 68 (352)
T ss_pred ceEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEE
Confidence 4688999887653 45799999999999999999999999999999999998764 48999999999
Q ss_pred CCcc-cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000867 756 KKQE-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1247)
Q Consensus 756 ~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 834 (1247)
+... ..+|.+|+|+|+-++||+|||.||+.|+.+++ .....++.+++|+++++.++|.+..+... .+|||||
T Consensus 69 i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQ 141 (352)
T COG3842 69 ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQ 141 (352)
T ss_pred CCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHH
Confidence 8653 45788999999999999999999999997633 23455667789999999999999988875 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 835 r~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+|||++||||+.+|++|+||||.|.||..-+.+++..++++.++ |.|.|++|||.. |-+.+-|+
T Consensus 142 qQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDr 206 (352)
T COG3842 142 QQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDR 206 (352)
T ss_pred HHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccc
Confidence 99999999999999999999999999999999999999998654 999999999985 56667787
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=322.10 Aligned_cols=193 Identities=26% Similarity=0.392 Sum_probs=159.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEecccc--ccCCCCCHHHHHHHHHhccCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHD--VHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~--~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+++|+||||||||||+|+|+|+++|. +|+|.++|.+......+..||||||.. .+-...||+|.+..+...+.
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~-- 106 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKK-- 106 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccc--
Confidence 58999999999999999999999987 999999998877655567899999953 23344699999998632211
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
..++ ... .+.++.+++.|+.+|+.+..|..+| .|||||+|||.||||
T Consensus 107 g~~~---~~~-------------------------~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QRV~lARA 153 (254)
T COG1121 107 GWFR---RLN-------------------------KKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARA 153 (254)
T ss_pred cccc---ccc-------------------------HHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHHHHHHHH
Confidence 0011 010 1123457889999999988877766 599999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|+++|++|+|||||+|+|+.++..+.+.|+++.++ +++|+++||+...+.++||+|+.|+ +++.+.|++++..
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 99999999999999999999999999999998654 6778889999999999999999995 4789999998865
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=303.17 Aligned_cols=191 Identities=30% Similarity=0.332 Sum_probs=167.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCC--CCcccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMD--EFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~--~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+++|+|||||||||+|++|++++.|+ +|.|+++|.+.. +...++.+|.++-+..++..||++|||.|.+++.+..
T Consensus 30 i~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~ 106 (245)
T COG4555 30 ITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS 106 (245)
T ss_pred EEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhh
Confidence 48999999999999999999999998 999999998863 3345788999998889999999999999998875432
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
..+.+..++++.+.|+|.++.|+++| ++|-|+||||+||||
T Consensus 107 ----------------------------------~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARA 147 (245)
T COG4555 107 ----------------------------------RKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARA 147 (245)
T ss_pred ----------------------------------hhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHH
Confidence 12234457788999999999998877 599999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
|+++|++++|||||||||..+...+.+.+++... .+.+|+..+|.++++..+||+|++|++|++++.|+.+.+..
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~--egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc--CCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999999999988633 36677778999999999999999999999999999887754
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=337.36 Aligned_cols=200 Identities=28% Similarity=0.415 Sum_probs=172.0
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|++..+. ++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEe
Confidence 3588999988763 24699999999999999999999999999999999998763 47999999998
Q ss_pred CCc--ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000867 756 KKQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 756 ~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 833 (1247)
... ...++.+||++|++.+++.+||+||+.|.+.++. .+..+.+++++++++.++|.+..++.++ +||||
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 142 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKVG-----ELSGG 142 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHH
Confidence 653 2345779999999999999999999998765532 2334445567899999999988888764 69999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.+..|+
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~ 207 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDR 207 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999777999999999986 55566676
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=315.84 Aligned_cols=181 Identities=26% Similarity=0.374 Sum_probs=151.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+|||||||||||++|.|...|+ +|.|.++|.++..... ++.+|||+|+..+++++||+|||.+.+.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence 48999999999999999999999997 9999999988764321 3679999999999999999999998765
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
+.+...+ +.+...+.+++.+||.+..+ ++++..|||||||||
T Consensus 110 ~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~----~~~p~eLSGGqqQRV 151 (226)
T COG1136 110 IAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLL----KKKPSELSGGQQQRV 151 (226)
T ss_pred HcCCChh----------------------------------HHHHHHHHHHHhcCChhhhc----cCCchhcCHHHHHHH
Confidence 5432100 11234567889999986544 245668999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcE
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQI 224 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v 224 (1247)
+|||||+.+|++++.||||.+||+.++..|++.++++.+. .+++++++||+. ++...|||++.|.+|++
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~-~g~tii~VTHd~-~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE-RGKTIIMVTHDP-ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh-cCCEEEEEcCCH-HHHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999998765 456666688876 67779999999999983
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=321.46 Aligned_cols=200 Identities=23% Similarity=0.314 Sum_probs=165.8
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehh
Confidence 568888877631 113599999999999999999999999999999999998653 4799999998764
Q ss_pred cc------cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 758 QE------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 758 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
.. .+++.++|++|++.+++.+||+||+.+....+ ....+..+++++++++.+|+.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 23467899999999999999999998875432 1223344566889999999988777665 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ .+.+..|+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~ 207 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHR 207 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998777899999999985 34445565
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=305.88 Aligned_cols=200 Identities=24% Similarity=0.326 Sum_probs=163.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1247)
|++|+|||||||||||++|.|+.+|+ +|+|.+||.++.... .++.+||++|+..+.+.+||.+|++.+..-
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~ 108 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG 108 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcc
Confidence 58999999999999999999999987 999999998765432 357899999999999999999999987532
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
+. ..+.. -..+. .++.+..+-+.|+++|+.+.+.++.+ +|||||+|||+
T Consensus 109 ~~-----s~~~s------lfglf---------------sk~dk~~Al~aLervgi~~~A~qra~-----~LSGGQQQRVa 157 (258)
T COG3638 109 YT-----STWRS------LFGLF---------------SKEDKAQALDALERVGILDKAYQRAS-----TLSGGQQQRVA 157 (258)
T ss_pred cc-----hHHHH------HhCCC---------------CHHHHHHHHHHHHHcCcHHHHHHHhc-----cCCcchhHHHH
Confidence 11 01100 11111 11223345567999999887766544 69999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||||+++|+|+|-|||+++|||.+++++++.|++.++.. +.|+++..|..+-+.++||||+-|++|+++|.||++++.
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~-g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPESAKKVMDILKDINQED-GITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence 9999999999999999999999999999999999998765 455555788899999999999999999999999998865
Q ss_pred H
Q 000867 235 D 235 (1247)
Q Consensus 235 ~ 235 (1247)
+
T Consensus 237 ~ 237 (258)
T COG3638 237 D 237 (258)
T ss_pred H
Confidence 4
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=333.98 Aligned_cols=202 Identities=24% Similarity=0.301 Sum_probs=170.5
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 6788998776411 0124699999999999999999999999999999999998763 4899999999865
Q ss_pred cc------cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 758 QE------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 758 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
.. ..++.+||++|+..+++.+||+||+.+....+ ..+.++.++++.++++.+||.+..|... +.||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 13567999999999999999999998875432 2334555667899999999998888765 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||||+|||||+++|++|+||||||+||+.++..+++.|+++.++ |.|||+++|+++ .+.+..|+
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~ 210 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDC 210 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998765 899999999975 45566777
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=338.32 Aligned_cols=200 Identities=26% Similarity=0.356 Sum_probs=172.0
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|++..++ +++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.+||.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 377889887762 124599999999999999999999999999999999998763 589999999886
Q ss_pred Ccc-cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000867 757 KQE-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 757 ~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
... ..++.+|||+|+..++|.+||+||+.|....+ ..+..+.+++++++++.+||.+..+..+ +.||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 432 23467999999999999999999999986533 2344555677899999999998888775 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 836 ~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++.++.|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~ 204 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADR 204 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 899999999985 57777887
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=322.58 Aligned_cols=198 Identities=26% Similarity=0.364 Sum_probs=165.2
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 5678877663 23599999999999999999999999999999999998653 47999999987643
Q ss_pred ------ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 759 ------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 759 ------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
..+++.++|++|++.+++.+||+||+.+...... ..+.+..+++++++++.+|+.+..++.+ +.|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 1245678999999999999999999988643221 1233444567888999999987776665 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~ 206 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADR 206 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999999998764 899999999986 45556676
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=336.11 Aligned_cols=199 Identities=26% Similarity=0.372 Sum_probs=173.1
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.+||.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478999988763 2458999999999999999999999999999999999876 3489999999886
Q ss_pred Cc-ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000867 757 KQ-ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 757 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
.. ...+|.+|||+|+..++|.+||+||+.|....+ ..+..+.+++++++++.+||.+..+... +.||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 43 223567999999999999999999999986543 2344556678999999999999888765 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 836 ~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||+|||||+.+|++++|||||++||..++..+.+.|+++.++ |.|+|++||++. ++..+.|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~ 204 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADR 204 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 899999999996 67788887
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=333.76 Aligned_cols=199 Identities=25% Similarity=0.368 Sum_probs=172.9
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.+||.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 588999988763 24589999999999999999999999999999999998763 489999999886
Q ss_pred Ccc-cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000867 757 KQE-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 757 ~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
... ..+|.+|||+|+..++|.+||+||+.|....+ ..+.++.+++++++++.+||.+..+... +.||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 532 23567999999999999999999999986543 2344556678899999999998887765 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 836 ~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||+|||||+.+|++|+|||||++||+.++..+.+.|+++.++ |+|+|++||++. ++..+.|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~ 206 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDT 206 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 899999999995 56777787
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=298.44 Aligned_cols=191 Identities=27% Similarity=0.357 Sum_probs=166.6
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcccc----cceEEEeccCCCCCC
Q 000867 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF----TRISGYCEQNDIHSP 776 (1247)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~----~~~~~~v~q~~~~~~ 776 (1247)
++++++++||+.+++||++|++|||||||||.+.++.|...+ .+|.|.+||.+++.... +.-+||+||++..|.
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 456799999999999999999999999999999999998764 37999999999875432 224799999999999
Q ss_pred CcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000867 777 FVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 856 (1247)
Q Consensus 777 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEp 856 (1247)
.+||+||+.-....+.. +...++++.+++++++.+++.|+++.... .||||||||+.|||||+.+|+.++||||
T Consensus 93 ~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 93 KLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999877665532 23334566678899999999999998753 6999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhcC
Q 000867 857 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEG 900 (1247)
Q Consensus 857 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 900 (1247)
++|+||.+..+|+++++.+...|.-|++|-|.-+ |..+..|++
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRa 209 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRA 209 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheE
Confidence 9999999999999999999988999999999886 567778884
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=317.01 Aligned_cols=200 Identities=29% Similarity=0.404 Sum_probs=163.8
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++.. ...+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~ 70 (218)
T cd03255 2 ELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDISK 70 (218)
T ss_pred eEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehhh
Confidence 577887766310 0014699999999999999999999999999999999998653 47999999987643
Q ss_pred cc-------ccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 759 ET-------FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 759 ~~-------~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
.. .++.++|++|++.+++.+||+|++.+....+. ......++.++++++.+||.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SELS 142 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcC
Confidence 11 24568999999999999999999988754431 223334556889999999987776665 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|++.. + +..|+
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~ 209 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADR 209 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcE
Confidence 9999999999999999999999999999999999999999999876 58999999999864 3 35565
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=315.24 Aligned_cols=197 Identities=28% Similarity=0.390 Sum_probs=163.0
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 4677777653 2459999999999999999999999999999999999865 347999999987643
Q ss_pred c-cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000867 759 E-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1247)
Q Consensus 759 ~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r 837 (1247)
. ..++.++|++|++.+++.+|++|++.+..... ....+..+++++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 2 23456899999998888999999998765332 1223344556788999999988777665 4699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccCChHHHHhhhc
Q 000867 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 838 ~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.+..|+
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 200 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADR 200 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999876 4899999999985 34455565
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=330.75 Aligned_cols=200 Identities=27% Similarity=0.374 Sum_probs=171.5
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|++..++ ++.+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEE
Confidence 4689999998763 24699999999999999999999999999999999998763 48999999998
Q ss_pred CCc--ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000867 756 KKQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 756 ~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 833 (1247)
... ...++.+||++|+..+++.+||+|++.+.+..+. .+..+.+++++++++.++|.+..++.++ .||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVS-----DLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHH
Confidence 653 2345679999999999999999999987665432 2233344567889999999988888764 69999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||++||+||+++|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+.+ ++-+..|+
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~ 241 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDR 241 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998777999999999985 56666777
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=334.35 Aligned_cols=199 Identities=24% Similarity=0.350 Sum_probs=172.1
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEE--EEEEEcCc
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGY 754 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~--G~i~i~g~ 754 (1247)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 578999988763 23599999999999999999999999999999999998764 36 99999998
Q ss_pred cCCcc-cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000867 755 PKKQE-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 755 ~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 833 (1247)
+.... ..++.+|||+|+..++|.+||+||+.|....+ ..+.++.+++++++++.+||.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 76432 23567999999999999999999999986543 2344555667899999999999888875 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeccCChHHHHhhhc
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++..+.|+
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dr 208 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADK 208 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998766 799999999986 46677777
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=313.13 Aligned_cols=196 Identities=26% Similarity=0.401 Sum_probs=163.8
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchhH
Confidence 5677777653 23599999999999999999999999999999999998653 48999999987653
Q ss_pred ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000867 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838 (1247)
Q Consensus 759 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~ 838 (1247)
..++.++|++|+..+++.+|++||+.+....+. ......++.++++++.+|+.+..++.+ +.||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHH
Confidence 345678999999999999999999987654431 223334556889999999987776654 46999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 839 ~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+||++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~ 197 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDR 197 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhE
Confidence 9999999999999999999999999999999999998777899999999986 34445565
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=314.16 Aligned_cols=199 Identities=27% Similarity=0.382 Sum_probs=163.6
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 70 (220)
T cd03293 2 EVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVTG 70 (220)
T ss_pred eEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcc
Confidence 567777765310 0114699999999999999999999999999999999998653 47999999987653
Q ss_pred ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000867 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838 (1247)
Q Consensus 759 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~ 838 (1247)
.++.++|++|++.+++.+|++||+.+....+. ...+..++.++++++.+|+.+..+..+ +.||||||||+
T Consensus 71 --~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 71 --PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred --ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 35678999999998888999999988654331 223344566889999999987776665 46999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccCChHHHHhhhc
Q 000867 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 839 ~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||+++|++. ++.+..|+
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 201 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADR 201 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999864 4899999999986 34455565
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=313.41 Aligned_cols=199 Identities=26% Similarity=0.332 Sum_probs=164.9
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 56788887652 123599999999999999999999999999999999998653 4799999998764
Q ss_pred cc------cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 758 QE------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 758 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
.. .+++.++|++|++.+++.+|++||+.+....+ ....+..+++++++++.+++.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 31 23567899999999999999999998875432 1223344566889999999987666654 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~ 206 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHR 206 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999999999998777899999999985 44445565
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=314.56 Aligned_cols=208 Identities=37% Similarity=0.604 Sum_probs=170.1
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-CeEEEEEEEcCccC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPK 756 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~i~g~~~ 756 (1247)
+.|+|+++.+... +..+.+|+|+|+++++||+++|+||||||||||+++|+|..+. .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 4578888776311 0135799999999999999999999999999999999997641 13589999999887
Q ss_pred CcccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCCCCCCCCHHHH
Q 000867 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEE-IMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
.....++.++|++|++.+++.+||+||+.+......+.....+...+.+++ .++.+++.+..++.+ +.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHH
Confidence 544556779999999999999999999998765433222122222334555 889999887766654 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 836 ~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||++|||+|+.+|++++|||||+|||+.++..+.+.++++.++|+|+|+++|++..++.+.+|+
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~ 213 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDR 213 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCE
Confidence 9999999999999999999999999999999999999998777899999999998788888887
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=284.57 Aligned_cols=181 Identities=28% Similarity=0.355 Sum_probs=153.7
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc-cccceEEEeccCCCCCCCcCHHHHHHH
Q 000867 708 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFTRISGYCEQNDIHSPFVTVYESLLY 786 (1247)
Q Consensus 708 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~ 786 (1247)
..+..|++||++||+||||||||||||.++|...+ .+|+|.|||.+.... ...|-++.++|+..+|..+||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 56788999999999999999999999999998764 489999999987542 345668899999999999999999977
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 000867 787 SAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866 (1247)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~ 866 (1247)
+..-.+ .. .++.+++++.++..+||..+.+.+.+ .|||||||||++||+|+++-+|++||||+|.||+.-+.
T Consensus 95 Gl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 643211 11 24456679999999999999888754 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCEEEEEeccCChHHHHhhhc
Q 000867 867 IVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 867 ~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++..++.++++ ++.|++++||+|+ +.-..-|+
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~ 199 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADR 199 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhc
Confidence 99999999874 4899999999996 34444444
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=330.48 Aligned_cols=187 Identities=28% Similarity=0.396 Sum_probs=161.3
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc--ccccceEEEeccCCCCCCCcC
Q 000867 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFTRISGYCEQNDIHSPFVT 779 (1247)
Q Consensus 702 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~lt 779 (1247)
++.+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 35699999999999999999999999999999999998663 48999999987643 233567899999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000867 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 859 (1247)
Q Consensus 780 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsg 859 (1247)
|+|++.+.+.++. .+....+++++++++.+||.+..++.++ .||||||||++||+||+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765442 2333445568899999999888877764 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 860 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 860 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||+.++..+++.|+++.++|+|||+++|++. ++.+..|+
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~ 193 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDR 193 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 9999999999999998877999999999985 55566676
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=313.58 Aligned_cols=197 Identities=28% Similarity=0.367 Sum_probs=164.2
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecCc
Confidence 5778877653 24599999999999999999999999999999999998653 48999999987542
Q ss_pred --ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000867 759 --ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1247)
Q Consensus 759 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~ 836 (1247)
...++.++|++|++.+++.+||+|++.+....+. ...++.+++++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHH
Confidence 2234578999999999999999999988654431 223334556889999999988777765 469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 837 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|++||+||+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~ 201 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDR 201 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999998776 899999999986 34445565
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=311.62 Aligned_cols=198 Identities=26% Similarity=0.352 Sum_probs=163.6
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEccc
Confidence 4677777653 124599999999999999999999999999999999998653 47999999987643
Q ss_pred c------cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 759 E------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 759 ~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
. ..++.++|++|++.+++.+|++||+.+....+. ...+..+++++++++.+|+.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1 235678999999999999999999988754331 223444556889999999987766664 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+..|+
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~ 205 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHR 205 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998777899999999985 33344554
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=332.22 Aligned_cols=199 Identities=23% Similarity=0.332 Sum_probs=172.1
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 588999988763 24599999999999999999999999999999999998763 489999999886
Q ss_pred Ccc-cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000867 757 KQE-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 757 ~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
... ..+|.+||++|+..++|.+||.||+.|+...+ ..+..+.+++++++++.+||.+..+..+ ..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 432 23567999999999999999999999976433 2234455667899999999998888775 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 836 ~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||+|||||+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++||++. ++..+.|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDr 214 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDR 214 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 899999999985 57777887
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=342.55 Aligned_cols=202 Identities=30% Similarity=0.452 Sum_probs=164.8
Q ss_pred cCCCCcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEE
Q 000867 671 LPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT 750 (1247)
Q Consensus 671 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~ 750 (1247)
.|.-.+.++++|++|.+... +..+|+|+|++|+|||.+||+|+||||||||+|+|.|... +.+|+|.
T Consensus 465 ~~~~~g~I~~~nvsf~y~~~-----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~ 531 (709)
T COG2274 465 LPKLQGEIEFENVSFRYGPD-----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRIL 531 (709)
T ss_pred ccccCceEEEEEEEEEeCCC-----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEE
Confidence 34456789999999998632 2369999999999999999999999999999999999876 3589999
Q ss_pred EcCccCCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccc
Q 000867 751 ISGYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-------PLRQS 820 (1247)
Q Consensus 751 i~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~ 820 (1247)
+||.|.+. ..+|+.+|||+||+.++. -|++||+.++. | +.+.++ +.++++..|.. .-.|+
T Consensus 532 ~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~----p-~~~~e~----i~~A~~~ag~~~fI~~lP~gy~t 601 (709)
T COG2274 532 LDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN----P-EATDEE----IIEAAQLAGAHEFIENLPMGYDT 601 (709)
T ss_pred ECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC----C-CCCHHH----HHHHHHHhCcHHHHHhccccccc
Confidence 99998654 567899999999998875 69999998652 2 223222 33444444433 23466
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 821 ~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.+|. ++.+||||||||++|||||+++|+||+||||||+||+++.+.|.+.|++.. +|+|+|+++|+++ .+...|+
T Consensus 602 ~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adr 676 (709)
T COG2274 602 PVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADR 676 (709)
T ss_pred cccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccE
Confidence 6664 446899999999999999999999999999999999999999999999875 5799999999986 5666776
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=311.58 Aligned_cols=197 Identities=26% Similarity=0.391 Sum_probs=163.5
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCc
Confidence 5678877653 23599999999999999999999999999999999998653 47999999987643
Q ss_pred c-cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000867 759 E-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1247)
Q Consensus 759 ~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r 837 (1247)
. ..++.++|++|++.+++..|++||+.+....+ ....++.+++++++++.+|+.+..+..+ +.||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHH
Confidence 2 22356899999998888999999998765432 1223444556888999999987777665 4699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 838 ~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~ 200 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADR 200 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCe
Confidence 99999999999999999999999999999999999998764 899999999985 44455565
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=330.39 Aligned_cols=201 Identities=25% Similarity=0.389 Sum_probs=170.5
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.+||.++.
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67888887763 24599999999999999999999999999999999998663 4799999998864
Q ss_pred cc-cccceEEEeccCCCCCCCcCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000867 758 QE-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 758 ~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
.. ..++.+||++|+..++|.+||+||+.|....+.. ...+.++.+++++++++.++|.+..+..+ ..||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 32 2346799999999999999999999987643211 12344555667899999999988887765 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 836 ~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++..+.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dr 206 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADR 206 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 899999999985 56667777
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=313.26 Aligned_cols=202 Identities=28% Similarity=0.403 Sum_probs=166.7
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++.. .....+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcc
Confidence 5678888776311 0112599999999999999999999999999999999998653 4799999998764
Q ss_pred c--ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000867 758 Q--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 758 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
. ..+++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+|+.+..+..+ +.||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 234567999999999999999999998765433 1233444567889999999988777665 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 836 ~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~ 205 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDR 205 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999998777899999999985 45555665
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=326.47 Aligned_cols=199 Identities=27% Similarity=0.374 Sum_probs=167.9
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++ ++.+|+|+||++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478899988763 24599999999999999999999999999999999998653 479999999876
Q ss_pred Cc--ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000867 757 KQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1247)
Q Consensus 757 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 834 (1247)
.. ...++.+||++|++.+++.+||+|++.+.+... ..+.+..+++++++++.++|.+..++.++ .|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHH
Confidence 42 223567999999999999999999998755432 12233344567889999999887777764 699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 835 r~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~ 204 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDR 204 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998777999999999986 55566676
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=330.48 Aligned_cols=200 Identities=24% Similarity=0.348 Sum_probs=172.2
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|++..+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+
T Consensus 18 ~~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~ 82 (377)
T PRK11607 18 PLLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVD 82 (377)
T ss_pred ceEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 3588999987763 23599999999999999999999999999999999998763 48999999987
Q ss_pred CCc-ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000867 756 KKQ-ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1247)
Q Consensus 756 ~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 834 (1247)
+.. ...+|.+||++|+..++|.+||.||+.|....+ ..+..+.+++++++++.++|.+..+..+ .+|||||
T Consensus 83 i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq 154 (377)
T PRK11607 83 LSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQ 154 (377)
T ss_pred CCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHH
Confidence 643 234678999999999999999999999876533 2234555667899999999998877765 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccCChHHHHhhhc
Q 000867 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 835 r~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||+|||||+.+|++|+|||||++||..++..+.+.|+++.+ .|.|+|++||++. ++..+-|+
T Consensus 155 ~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDr 219 (377)
T PRK11607 155 RQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGR 219 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 4899999999986 67777887
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=315.76 Aligned_cols=200 Identities=27% Similarity=0.355 Sum_probs=164.1
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECCC
Confidence 4677776653 23599999999999999999999999999999999998653 47999999987653
Q ss_pred c---c-ccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000867 759 E---T-FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE-------VDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827 (1247)
Q Consensus 759 ~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 827 (1247)
. . .++.++|++|++.+++.+||+|++.+....+.... ......++.++++++.+|+.+..++.+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 2 1 23458999999999999999999988654321110 112334556889999999987776665
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+..|+
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~ 212 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADR 212 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 469999999999999999999999999999999999999999999998777899999999986 45566676
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=314.95 Aligned_cols=197 Identities=27% Similarity=0.364 Sum_probs=163.9
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 5677777653 23599999999999999999999999999999999998653 47999999987543
Q ss_pred c---c-ccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000867 759 E---T-FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1247)
Q Consensus 759 ~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 834 (1247)
. . .++.++|++|++.+++.+|++||+.+....+. ...+..++.++++++.+++.+..++.+ +.|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHH
Confidence 1 1 23468999999999999999999987643321 223344456788999999987776665 4699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 835 r~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~ 202 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDR 202 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998777899999999986 56666666
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=331.94 Aligned_cols=199 Identities=25% Similarity=0.364 Sum_probs=169.8
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 378889987763 24599999999999999999999999999999999998763 479999999876
Q ss_pred Ccc-cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000867 757 KQE-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 757 ~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
... ..++.+||++|+..+++.+||+||+.|....+ ..+.++.+++++++++.+||.+..+..+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 431 23467899999999999999999999876433 1233445567899999999988777765 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 836 ~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|+++|++. ++.++.|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~ 203 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADK 203 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998764 899999999986 56677787
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=309.41 Aligned_cols=200 Identities=24% Similarity=0.339 Sum_probs=171.3
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
-+.++|++|+++. +..+|+|+|+++++||.++|+|+||||||||+++|+|...+ .+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeec
Confidence 3678899988741 25799999999999999999999999999999999998763 479999999986
Q ss_pred C----cccccceEEEeccCCCCC-CCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 757 K----QETFTRISGYCEQNDIHS-PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 757 ~----~~~~~~~~~~v~q~~~~~-~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
. ...+++.+|||+|++..+ -.-||.|.+.|+.. +...+.++.+++++++++.+|+.+..+... ..||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~---n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLE---NLGLPREEIEERVAEALELVGLEELLDRPP-----FNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchh---hcCCCHHHHHHHHHHHHHHcCchhhccCCc-----cccC
Confidence 5 345678899999998665 35799999999864 234556678889999999999999887764 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||||+||.+|+.+|++|+|||||||||+.....+++.++++.++ |+|+|+++|+.. .+.+..|+
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~ 208 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADR 208 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCE
Confidence 99999999999999999999999999999999999999999999877 689999999975 35555565
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=334.30 Aligned_cols=191 Identities=26% Similarity=0.339 Sum_probs=162.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.... .++.++||+|++.+++++||+|||.|+.+.++..
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~- 107 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP- 107 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCC-
Confidence 47999999999999999999999987 999999999876433 3478999999999999999999999976432100
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
..+.+..++++++.+||.+..+ +.+++|||||||||+|||||
T Consensus 108 ---------------------------------~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 108 ---------------------------------KAEIEERVAEAARILELEPLLD-----RKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCChhHhh-----CChhhCCHHHHHHHHHHHHH
Confidence 0112234677899999976544 55668999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
+.+|++++||||||+||+.++.++.+.++++.+. .+++++.++|+..++..++|+|++|++|+++..|+++++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR-LKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 9999999999999999999999999999987653 3566777899999999999999999999999999988764
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=312.54 Aligned_cols=196 Identities=26% Similarity=0.353 Sum_probs=162.6
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.+... ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 47899998876311 011469999999999999999999999999999999999865 3489999999876
Q ss_pred Cccc------c-cceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000867 757 KQET------F-TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829 (1247)
Q Consensus 757 ~~~~------~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 829 (1247)
.... . ++.++|++|++.+++.+|++||+.+....+ ....+..+++++++++.+||.+..++.+ ..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 4321 1 256899999998899999999998865432 1223344567889999999987766654 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccCCh
Q 000867 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSI 891 (1247)
Q Consensus 830 lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~ 891 (1247)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +|+|||+++|++..
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 999999999999999999999999999999999999999999999865 58999999999864
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=329.41 Aligned_cols=202 Identities=23% Similarity=0.300 Sum_probs=168.7
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|++++++.. ..++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 5788988876410 0124699999999999999999999999999999999998763 4899999998865
Q ss_pred cc------cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 758 QE------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 758 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
.. ..++.+||++|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 13467999999999999999999998875433 1233444567889999999988777665 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+..|+
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~ 210 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDR 210 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998764 899999999986 45566777
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=328.93 Aligned_cols=187 Identities=24% Similarity=0.265 Sum_probs=162.4
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc---cc----cceEEEeccCCCC
Q 000867 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TF----TRISGYCEQNDIH 774 (1247)
Q Consensus 702 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~~~v~q~~~~ 774 (1247)
.+.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.++... .. ++.+|||+|+..+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 45699999999999999999999999999999999998763 589999999887532 22 5679999999999
Q ss_pred CCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000867 775 SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 854 (1247)
Q Consensus 775 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lD 854 (1247)
+|.+||+||+.|..... ..+.++.++++.++++.+||.+..++.. ..|||||||||+|||||+.+|+||+||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999876543 2344556678899999999988877765 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 855 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 855 EptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||++||+.++..+++.++++.++ |+|||++||++.. +....|+
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~e-a~~~~dr 199 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDE-AIRIGDR 199 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCE
Confidence 999999999999999999998654 8999999999863 5666777
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=298.57 Aligned_cols=190 Identities=25% Similarity=0.286 Sum_probs=161.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc----ccceEEEecccc--ccCCCCCHHHHHHHHHhcc
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHD--VHIGEMTVRETLAFSARCQ 75 (1247)
Q Consensus 2 ~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~i~yv~Q~~--~~~~~lTv~e~l~f~~~~~ 75 (1247)
.+|+|+||||||||.++|+|..+|+ +|+|.++|++..... ..+.+-+|+||+ .+-|..||++.|.-+.+.+
T Consensus 36 lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~ 112 (252)
T COG1124 36 LGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH 112 (252)
T ss_pred EEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC
Confidence 5899999999999999999999997 999999998765432 357899999996 4678889999998765432
Q ss_pred CCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHH
Q 000867 76 GVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTT 155 (1247)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsi 155 (1247)
+.. +.+..+.++|+.+||++.. -++.+..|||||||||+|
T Consensus 113 ~~~------------------------------------~~~~~i~~~L~~VgL~~~~----l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 113 GLS------------------------------------KSQQRIAELLDQVGLPPSF----LDRRPHELSGGQRQRIAI 152 (252)
T ss_pred Ccc------------------------------------HHHHHHHHHHHHcCCCHHH----HhcCchhcChhHHHHHHH
Confidence 211 0111256789999998643 357788999999999999
Q ss_pred HHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 156 A~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
||||..+|++|+||||||+||+....+|++.|.++.+. .+.+.+.++|+..-+.++||||++|++|++++.++.+++.+
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~-~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE-RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh-cCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999999999999999999998664 56778889999999999999999999999999999998864
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=312.55 Aligned_cols=201 Identities=26% Similarity=0.388 Sum_probs=165.2
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 67889887763 23599999999999999999999999999999999998653 4899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCcCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000867 758 QE-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 758 ~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
.. ..++.++|++|++.+++.+||+||+.+....+.. ........++.++++++.+||.+..+..+ ..||||||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQR 142 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHH
Confidence 32 2245689999999998899999999876543211 00122333456788999999987777665 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 836 ~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~ 206 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADR 206 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998764 899999999985 35556666
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=282.67 Aligned_cols=180 Identities=27% Similarity=0.410 Sum_probs=161.9
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCcCHHH
Q 000867 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYE 782 (1247)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 782 (1247)
..+|+|+|++|.+||.++++||||||||||||+++|..+ +..|+|.+||.+++... ..-|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCC--ccceeEeccCccchhhHHHH
Confidence 359999999999999999999999999999999999876 35899999999876432 12389999999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000867 783 SLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862 (1247)
Q Consensus 783 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~ 862 (1247)
|+.|+..++ ..++.++.+++.+.+..+||.+..++.+- .||||||||+.|||||..+|++|+||||.+.||.
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~-----qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccceE-----eecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999998887 46678888899999999999998887763 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeccCChHHH
Q 000867 863 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIF 894 (1247)
Q Consensus 863 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~ 894 (1247)
-++++++++|-++.+ .|+.++++||+....+|
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ieEAlf 198 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIEEALF 198 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHh
Confidence 999999999999764 59999999999877666
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=309.09 Aligned_cols=182 Identities=29% Similarity=0.385 Sum_probs=152.3
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCC-CCCcCHH
Q 000867 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIH-SPFVTVY 781 (1247)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~-~~~ltv~ 781 (1247)
+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+......++.++|++|++.. +..+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 4599999999999999999999999999999999998653 489999999876443445678999999742 3457999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000867 782 ESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861 (1247)
Q Consensus 782 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD 861 (1247)
||+.+..... . . .+++++++++.+|+.+..++.+ +.||||||||++|||||+.+|++++|||||+|||
T Consensus 91 e~l~~~~~~~---~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL---D-A---GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc---C-c---cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754321 1 1 1245788999999988777765 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 862 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 862 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.++..+.+.|++++++|+|||+++|++.. +.+..|+
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~~~~~d~ 195 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYEF-LAKVCDR 195 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCE
Confidence 999999999999987779999999999863 4445555
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=294.64 Aligned_cols=201 Identities=27% Similarity=0.332 Sum_probs=161.5
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++.+|++..++... ....+|+|||++|.+||++||+|+||||||||.++|+|...+ .+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCccc
Confidence 477889887765321 123699999999999999999999999999999999998764 489999999876
Q ss_pred Ccc----cccceEEEeccCCC--CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCC
Q 000867 757 KQE----TFTRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-RQSLVGLPGESG 829 (1247)
Q Consensus 757 ~~~----~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~ 829 (1247)
... .+.+.+-+|+||+. +.|..||++.|.=.... ...++.+ +++.++++.+||.+. .+.. +.+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhcC-----chh
Confidence 543 36678899999975 66889999988543322 2223332 338899999999653 3332 357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 830 lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||||+||||||+.+|++|+||||||.||+..+..|+++|.++.++ +.|.|+++||.+. +..+.|+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdR 211 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDR 211 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhh
Confidence 9999999999999999999999999999999999999999999998755 7899999999753 4445565
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=278.11 Aligned_cols=181 Identities=27% Similarity=0.384 Sum_probs=155.9
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc-------cccceEEEeccCCC
Q 000867 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TFTRISGYCEQNDI 773 (1247)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~~~v~q~~~ 773 (1247)
+...||++|++.|++||.+||+|||||||||||-+|+|...+ .+|+|.+.|++.... .+.+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 456799999999999999999999999999999999998764 489999999986431 23467999999999
Q ss_pred CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000867 774 HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853 (1247)
Q Consensus 774 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~l 853 (1247)
+.|++|..||+.....++.... ....+...+.++.+||.+..+.+. .+|||||+|||+||||++..|+|||.
T Consensus 99 Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEEec
Confidence 9999999999988877764322 222334678999999988777664 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccCCh
Q 000867 854 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSI 891 (1247)
Q Consensus 854 DEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~ 891 (1247)
||||-+||.+|...|.+++-.+.+ .|.|.|++||||+.
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~L 209 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQL 209 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHH
Confidence 999999999999999999988764 49999999999963
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=309.45 Aligned_cols=191 Identities=26% Similarity=0.367 Sum_probs=162.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCC----CCcccceEEEecccc-ccCCCCCHHHHHHHHHhccC
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMD----EFVPQRTAAYISQHD-VHIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 2 ~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~----~~~~~~~i~yv~Q~~-~~~~~lTv~e~l~f~~~~~~ 76 (1247)
++|+||||||||||+++|+|+++|. +|+|.++|.+.. ....++.+|||+|++ ..+..-||.|.+.|+....+
T Consensus 33 ~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g 109 (235)
T COG1122 33 VLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG 109 (235)
T ss_pred EEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC
Confidence 7899999999999999999999997 899999998865 233468899999985 35566799999999876543
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
.. .++.+.+++++++.+||.+..+ +.+..|||||||||+||
T Consensus 110 ~~----------------------------------~~e~~~rv~~~l~~vgl~~~~~-----r~p~~LSGGqkqRvaIA 150 (235)
T COG1122 110 LP----------------------------------REEIEERVAEALELVGLEELLD-----RPPFNLSGGQKQRVAIA 150 (235)
T ss_pred CC----------------------------------HHHHHHHHHHHHHHcCchhhcc-----CCccccCCcceeeHHhh
Confidence 21 1123445788899999987654 55678999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
.+|+.+|++++|||||||||+..+.++++.++++... ++.++++++|+.+.+..++|++++|++|+++++|++.++.+
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 9999999999999999999999999999999998653 45677779999999999999999999999999999877653
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=308.24 Aligned_cols=193 Identities=29% Similarity=0.384 Sum_probs=160.7
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ .+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 5678877653 2359999999999999999999999999999999999865 348999999987643
Q ss_pred -ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000867 759 -ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1247)
Q Consensus 759 -~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r 837 (1247)
...++.++|++|++.+++.+||+||+.+....+. . .+++++++++.+++.+..++.+ +.||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHH
Confidence 2334578999999999999999999987654321 1 1345778999999988777665 4699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 838 ~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++||++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+-+..|+
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~ 195 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADR 195 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999998777899999999986 23334454
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=330.90 Aligned_cols=191 Identities=24% Similarity=0.348 Sum_probs=162.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++..... ++.++||+|+..+++.+||+||+.|+.+.++..
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~- 109 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVP- 109 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCC-
Confidence 47999999999999999999999987 9999999998765433 478999999999999999999999986532210
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
..+.++.++++++.+||.+.. ++.+..|||||||||+|||||
T Consensus 110 ---------------------------------~~~~~~~v~~~l~~~gl~~~~-----~r~~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 110 ---------------------------------KEERKQRVKEALELVDLAGFE-----DRYVDQISGGQQQRVALARAL 151 (351)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHH
Confidence 011223467788999997544 455678999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
+.+|++++|||||+|||+.++.++.+.|+++.+. .+++++.++|+..++..++|+|++|++|+++..|+++++.
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ-FNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999988654 3566777999999999999999999999999999998874
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=330.02 Aligned_cols=191 Identities=20% Similarity=0.300 Sum_probs=162.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++..... ++.++||+|++.+++++||+||+.|+.+
T Consensus 21 i~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~ 97 (363)
T TIGR01186 21 IFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPE 97 (363)
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999987 9999999998765332 4689999999999999999999999765
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
..+.. ..+..+.+.++++.+||+...+ +.+..|||||||||
T Consensus 98 ~~~~~----------------------------------~~~~~~~~~~~l~~vgL~~~~~-----~~p~~LSGGq~QRV 138 (363)
T TIGR01186 98 LLGWP----------------------------------EQERKEKALELLKLVGLEEYEH-----RYPDELSGGMQQRV 138 (363)
T ss_pred HcCCC----------------------------------HHHHHHHHHHHHHhcCCchhhh-----CChhhCCHHHHHHH
Confidence 43210 0112234567899999975544 45568999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+|||||+.+|+++||||||+|||+.++.++.+.++++.+. .+.+|+.++|+.+++..++|+|++|++|+++..|+++++
T Consensus 139 ~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~-~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 139 GLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT-LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999999999999999999999999999987553 356677799999999999999999999999999998887
Q ss_pred H
Q 000867 234 L 234 (1247)
Q Consensus 234 ~ 234 (1247)
.
T Consensus 218 ~ 218 (363)
T TIGR01186 218 L 218 (363)
T ss_pred H
Confidence 5
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=331.78 Aligned_cols=192 Identities=21% Similarity=0.308 Sum_probs=162.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCcee--eEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFS--GRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~--G~v~~~g~~~~~~~-~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
+++|+|||||||||||++|+|+.+|+ + |+|.++|+++.... .++.++||+|++.+++.+||+|||.|+.+.++.
T Consensus 33 ~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~ 109 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM 109 (362)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999987 7 99999998875433 246799999999999999999999998643211
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
. ..+.+..++++++.+||.+..+ +.+++|||||||||+|||
T Consensus 110 ~----------------------------------~~~~~~~v~~~l~~~gL~~~~~-----~~~~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 110 P----------------------------------KADIAERVADALKLVGLGDAAA-----HLPAQLSGGMQQRIAIAR 150 (362)
T ss_pred C----------------------------------HHHHHHHHHHHHHhcCCCchhh-----CChhhCCHHHHHHHHHHH
Confidence 0 0112234677899999976554 456689999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 158 al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
||+.+|++++|||||+|||+.++.++.+.|+++.+..++++++.++|+.+++..++|+|++|++|+++..|+++++.
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999998765432567777999999999999999999999999999998874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=341.01 Aligned_cols=193 Identities=22% Similarity=0.381 Sum_probs=158.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~---~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
.||||||||+||||+.++|...++|+ +|+|.+||+|+.+.++ |++||+|.|||.+|.. ||+|||.|+...
T Consensus 496 ~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~--- 568 (716)
T KOG0058|consen 496 VVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLDN--- 568 (716)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCCC---
Confidence 48999999999999999999999998 9999999999977654 5889999999998865 999999997531
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
...+++..++.+ .+..=-+.+++++.||.||+++. .||||||||++|||
T Consensus 569 ----------------------~t~e~i~~AAk~--------ANah~FI~~~p~gY~T~VGEkG~-qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 569 ----------------------ATDEEIEAAAKM--------ANAHEFITNFPDGYNTVVGEKGS-QLSGGQKQRIAIAR 617 (716)
T ss_pred ----------------------CCHHHHHHHHHH--------hChHHHHHhCccccccccCCccc-cccchHHHHHHHHH
Confidence 011111112111 11112345699999999997666 79999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 158 al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
||++||+||||||.||+||++++..+-+.|.+..+ +.|+++|.|.. +..+.+|+|+++++|++++.|+++++++
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~---~rTVlvIAHRL-STV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ---GRTVLVIAHRL-STVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc---CCeEEEEehhh-hHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999999999999987643 35566577766 5678899999999999999999999874
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=341.28 Aligned_cols=195 Identities=28% Similarity=0.428 Sum_probs=162.4
Q ss_pred CCcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcC
Q 000867 674 EPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 753 (1247)
Q Consensus 674 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g 753 (1247)
-.+.++|+||+++|+..+ +.++|||+||+|+|||.+||+||||+||||+.+.|-...+ +.+|+|.+||
T Consensus 462 ~~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG 529 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDG 529 (716)
T ss_pred ccceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECC
Confidence 356899999999997553 4579999999999999999999999999999999998765 4589999999
Q ss_pred ccCCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCC
Q 000867 754 YPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFI-----EEIMELVELNPLRQSLVGLP 825 (1247)
Q Consensus 754 ~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~l~l~~~~~~~~g~~ 825 (1247)
.|+++ ..+++.+|+|.|+|.+|. -|++||+.|+.. +.+.++..... .+.+ .++.+-.||.||..
T Consensus 530 ~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGEk 601 (716)
T KOG0058|consen 530 VPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGEK 601 (716)
T ss_pred eehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHH--HhCccccccccCCc
Confidence 99764 456789999999999986 599999998753 33333322111 1222 34566688999864
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCC
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1247)
| ..||||||||++|||||++||+||||||+||.||+++...++++|.+..+ ++|||+++|+.|
T Consensus 602 G-~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS 664 (716)
T KOG0058|consen 602 G-SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS 664 (716)
T ss_pred c-ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh
Confidence 4 37999999999999999999999999999999999999999999988764 699999999886
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=312.31 Aligned_cols=198 Identities=24% Similarity=0.279 Sum_probs=161.5
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC-----CCCeEEEEEEEcC
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYITGNITISG 753 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~-----~~~~~~G~i~i~g 753 (1247)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDG 66 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECC
Confidence 5677777653 235999999999999999999999999999999999976 4 3589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 828 (1247)
.++.. ..+++.++|++|++.++ .+||+||+.+....+. ....+..+++++++++.+|+.+..+.... +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87542 22356789999998888 7999999988654331 11222234567889999999876555430 24
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||+++|++. .+.+..|+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~ 209 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADR 209 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCE
Confidence 79999999999999999999999999999999999999999999998776 99999999986 45556676
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=302.61 Aligned_cols=178 Identities=26% Similarity=0.336 Sum_probs=149.8
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc-----ccccceEEEeccCCC-CCC
Q 000867 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-----ETFTRISGYCEQNDI-HSP 776 (1247)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~-~~~ 776 (1247)
+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++. ...
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 4699999999999999999999999999999999998653 48999999987631 123557899999973 233
Q ss_pred CcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000867 777 FVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 856 (1247)
Q Consensus 777 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEp 856 (1247)
..|++||+.+..... ..+.+..+++++++++.+|+.+..++.+ +.||||||||++|||||+.+|++++||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 479999998865322 1233444556889999999988777765 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCC
Q 000867 857 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 857 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1247)
|+|||+.+...+.+.|+++.++|+|||+++|++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999998777999999999985
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=282.72 Aligned_cols=185 Identities=23% Similarity=0.348 Sum_probs=160.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1247)
++-|+||||||||||||+|.++..|+ .|+|.+||+++.... .||+||+|+||.-+++..||.||+.|+.+.
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v 106 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV 106 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc
Confidence 46799999999999999999999997 999999999985432 358999999999999999999999998776
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
.+.. ..+.++.+.++|+.+||.+..+ ..+..|||||||||+
T Consensus 107 ~G~~----------------------------------~~~i~~rV~~~L~~VgL~~k~~-----~lP~~LSGGEQQRva 147 (223)
T COG2884 107 IGKP----------------------------------PREIRRRVSEVLDLVGLKHKAR-----ALPSQLSGGEQQRVA 147 (223)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHhccchhhh-----cCccccCchHHHHHH
Confidence 5421 1223445778899999987665 346689999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecC
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGP 229 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~ 229 (1247)
||||++.+|++|+-||||..||+..+.+|++.+.++.+ .+|+|++.+|+..-+..+-.+++.|++|+++....
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999999864 47888889999999999999999999999986653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=309.29 Aligned_cols=201 Identities=24% Similarity=0.333 Sum_probs=162.5
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.+... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhh
Confidence 5678888776311 0124699999999999999999999999999999999998653 4899999998764
Q ss_pred cc---c---cc-ceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000867 758 QE---T---FT-RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGL 830 (1247)
Q Consensus 758 ~~---~---~~-~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 830 (1247)
.. . ++ +.++|++|++.+++.+|++||+.+....+. .......+++.++++.+|+.+..+..+ +.|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 31 1 12 568999999988889999999988654321 122333456788999999987766654 469
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 831 SgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||||++|||+|+.+|++|+|||||+|||..++..+.+.|+++.++ |+|||+++|++.. + +..|+
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~-~~~d~ 210 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL-A-KKLDR 210 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-hhcCE
Confidence 999999999999999999999999999999999999999999998754 8999999999863 3 33465
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=308.91 Aligned_cols=186 Identities=27% Similarity=0.366 Sum_probs=153.9
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc---ccccceEEEeccCCC-CCCCc
Q 000867 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDI-HSPFV 778 (1247)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 778 (1247)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 4699999999999999999999999999999999998653 47999999987642 234567899999975 35678
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000867 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 858 (1247)
Q Consensus 779 tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpts 858 (1247)
|++||+.+....+ .......++.++++++.+|+.+..++.+ ..||||||||++|||||+.+|++++|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998764332 1223334456788999999987666654 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 859 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 859 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||+.++..+.+.|++++++|+|||+++|++. ++-+..|+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~ 203 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADR 203 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999998777899999999985 34444554
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=308.32 Aligned_cols=198 Identities=24% Similarity=0.335 Sum_probs=163.0
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ ++.+|+|+|++++|||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCc
Confidence 5678877653 23599999999999999999999999999999999998653 47999999987632
Q ss_pred -----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000867 759 -----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 759 -----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 833 (1247)
...++.++|++|++.+++.+|++||+.+...... ....++.+++++++++.+|+.+..+..+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 2345678999999999999999999987642111 1223344556788999999987766665 469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||++||+||+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++-+..|+
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~ 204 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADR 204 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998777899999999985 34444554
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=313.50 Aligned_cols=196 Identities=26% Similarity=0.337 Sum_probs=163.2
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 56788887653 23599999999999999999999999999999999998653 4799999998764
Q ss_pred cccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000867 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1247)
Q Consensus 758 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r 837 (1247)
. ..+.++|++|++.+++.+||+||+.+....+ .......+++++++++.+|+.+..+..+ ..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 3 2345799999998888899999998764332 1223344556889999999987766654 4699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccCChHHHHhhhc
Q 000867 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 838 ~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|++. .+.+..|+
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~ 198 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATE 198 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999854 5899999999986 45556676
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=327.77 Aligned_cols=191 Identities=22% Similarity=0.311 Sum_probs=161.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1247)
+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.... .++.++|++|+..+++..||+||+.++...
T Consensus 33 i~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~ 109 (343)
T TIGR02314 33 IYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (343)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH
Confidence 47999999999999999999999987 999999999876432 246799999999999999999999986543
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
.+.. ..+.+..+.++++.+||.+..| +.+..|||||||||+
T Consensus 110 ~~~~----------------------------------~~~~~~~v~e~l~~vgL~~~~~-----~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 110 DNTP----------------------------------KDEIKRKVTELLALVGLGDKHD-----SYPSNLSGGQKQRVA 150 (343)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHH
Confidence 2110 0112224567899999986554 455689999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||||+.+|++|+|||||||||+.++.++++.|+++.+.. +.+|++++|+.+.+.++||+|++|++|++++.|+++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~-g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999986643 556777899999999999999999999999999988764
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=330.44 Aligned_cols=191 Identities=24% Similarity=0.361 Sum_probs=162.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.... .+|.++||+|+..+|+.+||+||+.|+.+.++..
T Consensus 32 ~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~- 107 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMG- 107 (353)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCC-
Confidence 47999999999999999999999987 999999999876433 3578999999999999999999999976432100
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
..+.+..++++++.+||++..+ +.+.+|||||||||+|||||
T Consensus 108 ---------------------------------~~~~~~~~~~~l~~l~L~~~~~-----~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 108 ---------------------------------RAEVAERVAELLDLVGLPGSER-----KYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCCchhh-----CChhhCCHHHHHHHHHHHHH
Confidence 0112234678899999986554 55668999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
+.+|+++|||||+++||+.++.++.+.|+++.+. .+++++.++|+..++..++|+|++|++|++++.|+++++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR-LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999987654 3566777899999999999999999999999999988875
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=321.66 Aligned_cols=197 Identities=25% Similarity=0.379 Sum_probs=168.1
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++++. ++.+|+|+||++++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 67888887763 24599999999999999999999999999999999998663 4899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000867 758 Q--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 758 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
. ...++.+||++|++.+++.+||.|++.+.+.++. .+.++.+++++++++.+||.+..++.++ .||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHH
Confidence 3 2345679999999999999999999998775542 2234445568899999999988887764 6999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 836 ~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||++||+||+++|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+..|+
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~ 201 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDR 201 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999864 799999999986 56666676
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=312.32 Aligned_cols=202 Identities=25% Similarity=0.305 Sum_probs=165.8
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 5677887765310 0012699999999999999999999999999999999998763 4799999998764
Q ss_pred cc------cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 758 QE------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 758 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..+..+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 31 124678999999999999999999988654331 233344556789999999987776654 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~ 210 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDR 210 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998765 899999999985 45566676
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=305.80 Aligned_cols=185 Identities=24% Similarity=0.349 Sum_probs=155.9
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC---c----ccccceEEEeccCCCCC
Q 000867 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---Q----ETFTRISGYCEQNDIHS 775 (1247)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~~~v~q~~~~~ 775 (1247)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 4599999999999999999999999999999999998653 4799999998743 1 12346789999999999
Q ss_pred CCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000867 776 PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 855 (1247)
Q Consensus 776 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDE 855 (1247)
+.+|++||+.+....+ ....+...++++++++.+|+.+..++.+ ..||||||||++|||||+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999998865432 1223444566889999999987777665 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 856 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 856 ptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||+|||+.+...+.+.|+++.++|.|||+++|++.. .+..|+
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~--~~~~d~ 202 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV--AKQADR 202 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--HhhcCE
Confidence 999999999999999999987778999999999852 344444
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=301.48 Aligned_cols=185 Identities=26% Similarity=0.391 Sum_probs=160.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-------cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+|||-|+||||||||+|+|+|+..|+ +|.|.+||+-+.+. ..+|++|||+||..+||.+||+.|+.|+..
T Consensus 26 vTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~ 102 (352)
T COG4148 26 ITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMW 102 (352)
T ss_pred eEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhc
Confidence 58999999999999999999999998 99999999765221 235899999999999999999999999753
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
.. .....|.+.+.||+++.. ++++.+|||||||||
T Consensus 103 ~~----------------------------------------~~~~fd~iv~lLGI~hLL-----~R~P~~LSGGEkQRV 137 (352)
T COG4148 103 KS----------------------------------------MRAQFDQLVALLGIEHLL-----DRYPGTLSGGEKQRV 137 (352)
T ss_pred cc----------------------------------------chHhHHHHHHHhCcHHHH-----hhCCCccCcchhhHH
Confidence 21 011235677888987654 467788999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+|+|||++.|++|+||||.+.||-....+++-.|.++.++. +.-|+.++|..+|+.+++|+|++|++|++...|+.+++
T Consensus 138 AIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~-~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v 216 (352)
T COG4148 138 AIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEV 216 (352)
T ss_pred HHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhc-CCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHH
Confidence 99999999999999999999999999999999999987754 56678899999999999999999999999999999887
Q ss_pred H
Q 000867 234 L 234 (1247)
Q Consensus 234 ~ 234 (1247)
.
T Consensus 217 ~ 217 (352)
T COG4148 217 W 217 (352)
T ss_pred h
Confidence 5
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=329.47 Aligned_cols=202 Identities=26% Similarity=0.349 Sum_probs=168.6
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.+. ++.+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEc
Confidence 377889988763 24699999999999999999999999999999999998663 479999999886
Q ss_pred Cc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
.. ...++.+||++|+..+++.+||+|++.+....... .....+..+++++++++.+|+.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 53 23466799999999998899999999875321100 01112334567899999999998888775 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||+.|||||+++|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.+..|+
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adr 208 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDE 208 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999877899999999985 45566776
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=308.74 Aligned_cols=198 Identities=26% Similarity=0.393 Sum_probs=163.1
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++. .++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 68 (220)
T cd03263 2 QIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIRT 68 (220)
T ss_pred EEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 56777776531 114699999999999999999999999999999999998653 48999999987643
Q ss_pred --ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000867 759 --ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1247)
Q Consensus 759 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~ 836 (1247)
...++.++|++|++.+++.+|++||+.+....+. ...+..+++++++++.++|.+..++.+ ..|||||||
T Consensus 69 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 140 (220)
T cd03263 69 DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKR 140 (220)
T ss_pred chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHH
Confidence 2345568999999998889999999988654331 223334456788999999987777665 469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 837 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+-+..|+
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~ 201 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDR 201 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999999865 599999999986 34455565
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=307.25 Aligned_cols=199 Identities=25% Similarity=0.325 Sum_probs=163.3
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 56788887662 123599999999999999999999999999999999998653 4899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 758 QE------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 758 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
.. .+++.++|++|++.+++.+|++||+.+....+ ....++.++.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 21 13567899999998888899999998865432 1233344456788999999987666654 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++.++|.|+|+++|+++. +-+..|+
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~ 206 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL-ISRRSYR 206 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCE
Confidence 999999999999999999999999999999999999999999987778999999999863 3334454
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=324.75 Aligned_cols=191 Identities=26% Similarity=0.356 Sum_probs=161.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+|||+|++.+++.+||+||+.|.+...+..
T Consensus 35 i~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS 111 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 99999999987542 23467999999999999999999999865443210
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
..+.+..++++++.++|.+..++.+ ++||||||||++||+|
T Consensus 112 ----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~a 152 (306)
T PRK13537 112 ----------------------------------AAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRLTLARA 152 (306)
T ss_pred ----------------------------------HHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHHHHHHH
Confidence 0011223567888999987776655 4799999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
|+++|++++|||||+|||+.++.++++.++++.+ .+++|+.++|+.+++.++||+|++|++|++++.|+++++.+
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999753 35677778999999999999999999999999999988754
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=308.71 Aligned_cols=187 Identities=27% Similarity=0.412 Sum_probs=152.6
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCC--CcCH
Q 000867 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSP--FVTV 780 (1247)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~--~ltv 780 (1247)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++. ..++.++|++|++.+.+ .+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 3599999999999999999999999999999999998653 4799999998654 24567899999987643 3799
Q ss_pred HHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000867 781 YESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 859 (1247)
Q Consensus 781 ~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsg 859 (1247)
+||+.+....... .....+..+++++++++.+++.+..++.+ ..||||||||++|||||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 00111233456889999999987766655 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 860 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 860 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~ 201 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDR 201 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999999999998777899999999986 34455565
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=317.42 Aligned_cols=188 Identities=23% Similarity=0.281 Sum_probs=158.0
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc---c----ccceEEEeccCCC
Q 000867 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FTRISGYCEQNDI 773 (1247)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~~~v~q~~~ 773 (1247)
+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.++|++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 346799999999999999999999999999999999998753 479999999876421 1 1356899999999
Q ss_pred CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000867 774 HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853 (1247)
Q Consensus 774 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~l 853 (1247)
+++.+||+||+.+....+ .......+++++++++.+||.+..++.+ +.||||||||++|||||+.+|++|+|
T Consensus 113 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999998865432 1223344556889999999988777765 36999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 854 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 854 DEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+..|+
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~ 230 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDR 230 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999999999999999998654 899999999986 35556666
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=302.94 Aligned_cols=187 Identities=24% Similarity=0.326 Sum_probs=158.5
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 56778877653 23599999999999999999999999999999999998663 4799999998764
Q ss_pred c--ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000867 758 Q--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 758 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
. ..+++.++|++|++.+++.+|+.|++.+....+. . ..+++++++++.+|+.+..++.+ +.||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHH
Confidence 2 2345678999999988899999999987654321 1 12345788999999987766654 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCC
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 836 ~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1247)
||++||+||+++|++++|||||+|||+.+...+.+.|+++.++|+|||+++|++.
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 9999999999999999999999999999999999999998777899999999975
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=313.47 Aligned_cols=201 Identities=27% Similarity=0.306 Sum_probs=161.4
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccc
Confidence 46777766531 14599999999999999999999999999999999998653 47999999987643
Q ss_pred c------cccceEEEeccCCCCCCCcCHHHHHHHHhhccC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000867 759 E------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRL-----PPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827 (1247)
Q Consensus 759 ~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 827 (1247)
. ..++.++|++|++.+++.+||+||+.+...... .........++++.++++.+++.+..+..+
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA----- 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----
Confidence 1 234578999999999999999999977532110 001111233456788999999987666654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++. +.+..|+
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~~~~~d~ 214 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADR 214 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCE
Confidence 479999999999999999999999999999999999999999999998754 8999999999863 5555666
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=303.98 Aligned_cols=192 Identities=23% Similarity=0.329 Sum_probs=168.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+..|||-||||||||+++|.++.+|+ +|+|.++|.++..... ++.+++|+|+-.++|..||.||..|+.+
T Consensus 56 IfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe 132 (386)
T COG4175 56 IFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 132 (386)
T ss_pred EEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee
Confidence 46899999999999999999999997 9999999998754332 3679999999999999999999999988
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
.++... ++.++...+.|+..||....+ +++++||||+||||
T Consensus 133 v~Gv~~----------------------------------~er~~~a~~~l~~VgL~~~~~-----~yp~eLSGGMqQRV 173 (386)
T COG4175 133 VQGVPK----------------------------------AEREERALEALELVGLEGYAD-----KYPNELSGGMQQRV 173 (386)
T ss_pred ecCCCH----------------------------------HHHHHHHHHHHHHcCchhhhh-----cCcccccchHHHHH
Confidence 876431 123345677899999987765 45678999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
.|||||+.+|+|||+|||+|+|||--+.+..+.|.++-+.. ++||+.++|+.+|++++.|||.+|++|+++..|+++++
T Consensus 174 GLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l-~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eI 252 (386)
T COG4175 174 GLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL-KKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEI 252 (386)
T ss_pred HHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHh-CCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999988876655 55677799999999999999999999999999999998
Q ss_pred HH
Q 000867 234 LD 235 (1247)
Q Consensus 234 ~~ 235 (1247)
+.
T Consensus 253 l~ 254 (386)
T COG4175 253 LL 254 (386)
T ss_pred Hc
Confidence 73
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=329.99 Aligned_cols=191 Identities=27% Similarity=0.359 Sum_probs=162.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.... .++.++||+|++.+++.+||+|||.|+.+.++..
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~- 117 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP- 117 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCC-
Confidence 47999999999999999999999987 999999999875433 3478999999999999999999999975432110
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
..+.++.++++++.+||.+..+ +.+.+|||||||||+|||||
T Consensus 118 ---------------------------------~~~~~~~~~~~l~~~~l~~~~~-----~~p~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 118 ---------------------------------AAEITPRVMEALRMVQLEEFAQ-----RKPHQLSGGQQQRVAIARAV 159 (375)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHH
Confidence 0111234567889999976554 45668999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
+.+|+++|||||+++||..++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|+++..|+++++.
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999986643 566777999999999999999999999999999988874
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=287.72 Aligned_cols=193 Identities=21% Similarity=0.345 Sum_probs=164.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP----QRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~----~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++++|||||||||...++.|+..|+ +|+|.++|.+++.... +.-+||+||++..|..+||+|||+-..+.+.
T Consensus 32 iVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~ 108 (243)
T COG1137 32 IVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIRE 108 (243)
T ss_pred EEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhh
Confidence 47899999999999999999999998 9999999999976543 3469999999999999999999987655432
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
.. ....+.+...+++|+.+.+.+.++. ....||||||||+.||
T Consensus 109 ~d--------------------------------~~~~~~~~~l~~LL~ef~i~hlr~~-----~a~sLSGGERRR~EIA 151 (243)
T COG1137 109 KD--------------------------------LKKAERKEELDALLEEFHITHLRDS-----KAYSLSGGERRRVEIA 151 (243)
T ss_pred cc--------------------------------hhHHHHHHHHHHHHHHhchHHHhcC-----cccccccchHHHHHHH
Confidence 10 0011233456789999999877664 4557999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
|||+.+|+.++||||++|+||.+..+|-+.++.+.. ++..|+++-|+..|...+|||.+++.+|+++.+|+++++.+
T Consensus 152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999999999999999988754 47778878999999999999999999999999999988763
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=308.25 Aligned_cols=195 Identities=28% Similarity=0.402 Sum_probs=158.8
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 66 (222)
T cd03224 2 EVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDITG 66 (222)
T ss_pred EEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCC
Confidence 5677776552 23599999999999999999999999999999999998653 47999999987643
Q ss_pred c---c-ccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCCHH
Q 000867 759 E---T-FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV-ELNPLRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 759 ~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~g~~~~~~lSgG 833 (1247)
. . .++.++|++|++.+++.+|++||+.+...... ....++.+.++++.+ ++.+..++.+ +.||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 136 (222)
T cd03224 67 LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSGG 136 (222)
T ss_pred CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHH
Confidence 2 1 24568999999999999999999988654321 122234566778887 4666556554 469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 137 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 201 (222)
T cd03224 137 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADR 201 (222)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccE
Confidence 999999999999999999999999999999999999999998777899999999985 34455665
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=310.79 Aligned_cols=198 Identities=27% Similarity=0.367 Sum_probs=162.9
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcCc
Confidence 46777776531 13599999999999999999999999999999999998653 47999999987543
Q ss_pred ---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCHH
Q 000867 759 ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP--LRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 759 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~~g~~~~~~lSgG 833 (1247)
...++.++|++|++.+++.+|++||+.+....+ ..+.+..++.+.++++.+|+.+ ..++.+ +.||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHH
Confidence 233557899999999999999999998765432 1233444556889999999985 555543 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+..|+
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~ 205 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADR 205 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998764 899999999985 34455565
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=311.94 Aligned_cols=199 Identities=26% Similarity=0.344 Sum_probs=164.4
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcc
Confidence 67888887763 23599999999999999999999999999999999998653 4799999998754
Q ss_pred c-----------ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000867 758 Q-----------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826 (1247)
Q Consensus 758 ~-----------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 826 (1247)
. ...++.++|++|++.+++.+|++||+.+...... ....+...++++++++.+|+.+..+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 142 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP---- 142 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh----
Confidence 2 1234578999999999989999999987532111 1233344556888999999987766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 827 ~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 143 -~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~ 213 (250)
T PRK11264 143 -RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADR 213 (250)
T ss_pred -hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 469999999999999999999999999999999999999999999998777899999999985 35555666
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=309.28 Aligned_cols=199 Identities=22% Similarity=0.339 Sum_probs=164.6
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56788887653 2359999999999999999999999999999999999865 34799999998764
Q ss_pred c-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 758 Q-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 758 ~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
. ...++.++|++|++.+++.+||+|++.+...... .......++++.++++.+|+.+..+..+ +.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 3 1235578999999998999999999987542111 1233444566889999999987766654 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||++|||||+.+|++++|||||+|||..++..+.+.|+++.++|+|||+++|++. ++-+..|+
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 205 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASR 205 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998777899999999986 34455666
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=312.90 Aligned_cols=202 Identities=25% Similarity=0.284 Sum_probs=162.0
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhh
Confidence 46778876652 024599999999999999999999999999999999998653 4799999998754
Q ss_pred cc------cccceEEEeccCCCCCCCcCHHHHHHHHhhccC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000867 758 QE------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRL-----PPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826 (1247)
Q Consensus 758 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 826 (1247)
.. .+++.++|++|++.+++.+||+||+.+...... .........++++.++++.+|+.+..+..+
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 143 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---- 143 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 21 235678999999999999999999976421100 001112233456788999999987766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 827 ~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|++.. +.+..|+
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~-~~~~~d~ 215 (243)
T TIGR02315 144 -DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL-AKKYADR 215 (243)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCe
Confidence 469999999999999999999999999999999999999999999998654 8999999999863 4556666
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=315.94 Aligned_cols=203 Identities=21% Similarity=0.301 Sum_probs=165.0
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECC
Confidence 67889988764110 0124699999999999999999999999999999999998663 4899999998865
Q ss_pred c-----ccccceEEEeccCCC-CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCCC
Q 000867 758 Q-----ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN--PLRQSLVGLPGESG 829 (1247)
Q Consensus 758 ~-----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~~g~~~~~~ 829 (1247)
. ...++.+||++|++. .+...||+|++.|..... ..+.++..++++++++.+||. +..++.+ +.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----cc
Confidence 3 134567999999863 233579999998865332 234455566788999999996 5556554 47
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 830 lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++....|+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dr 214 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADR 214 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999998765 899999999985 45566777
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=310.00 Aligned_cols=192 Identities=22% Similarity=0.286 Sum_probs=162.0
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|++++++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 11 ~~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~ 75 (257)
T PRK11247 11 TPLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAP 75 (257)
T ss_pred CcEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEE
Confidence 3588999998763 23599999999999999999999999999999999998653 47999999876
Q ss_pred CCcccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000867 756 KKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 756 ~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
.. ..++.++|++|++.+++.+||+||+.+... . ..++++.++++.+|+.+..+..+ ..||||||
T Consensus 76 ~~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqk 139 (257)
T PRK11247 76 LA--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQK 139 (257)
T ss_pred HH--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHH
Confidence 53 235678999999999998999999987421 0 12345778999999987766654 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccCChHHHHhhhc
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 836 ~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||+++|++. .+.+..|+
T Consensus 140 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~ 203 (257)
T PRK11247 140 QRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADR 203 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999864 4899999999986 34556676
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=299.10 Aligned_cols=185 Identities=25% Similarity=0.329 Sum_probs=156.1
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEccc
Confidence 4677776653 24699999999999999999999999999999999998653 47999999987542
Q ss_pred --ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000867 759 --ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1247)
Q Consensus 759 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~ 836 (1247)
..+++.++|++|++.+++.+|+.|++.+....+. . + ++.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHH
Confidence 2234678999999888888999999987643321 1 1 234678999999988777665 369999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCC
Q 000867 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 837 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1247)
|++|||+++.+|++++|||||+|||..+...+.+.|+++.++|.|||+++|++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 999999999999999999999999999999999999998777899999999985
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=312.65 Aligned_cols=200 Identities=21% Similarity=0.306 Sum_probs=165.1
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 478999987763 24599999999999999999999999999999999998653 479999999876
Q ss_pred Ccc------cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000867 757 KQE------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGL 830 (1247)
Q Consensus 757 ~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 830 (1247)
... ..++.++|++|+..+++.+|+.||+.+...... ..+.+..++.+.++++.+|+.+..+..+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 124568999999999999999999987543211 1223334456788999999988777665 469
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 831 SgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~ 213 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADH 213 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCE
Confidence 999999999999999999999999999999999999999999998755 899999999975 34555666
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=306.93 Aligned_cols=204 Identities=24% Similarity=0.279 Sum_probs=159.4
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.+... .....+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 5678888766310 0012599999999999999999999999999999999998653 4799999998764
Q ss_pred c------ccccceEEEeccCC--CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000867 758 Q------ETFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGES 828 (1247)
Q Consensus 758 ~------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 828 (1247)
. ..+++.++|++|++ .+++.+||+||+.+......+ ....+..+..++++++.+++. +..+..+ .
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRYP-----H 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCCc-----h
Confidence 3 23456799999998 466789999999876543321 111111122235788999985 4555554 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+-+..|+
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 215 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADR 215 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCe
Confidence 69999999999999999999999999999999999999999999998765 899999999985 34445665
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=306.58 Aligned_cols=191 Identities=26% Similarity=0.380 Sum_probs=159.6
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcc
Confidence 56778877653 23599999999999999999999999999999999998653 4799999998764
Q ss_pred cc--cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000867 758 QE--TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 758 ~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
.. ...+.++|++|++.+++.+|++||+.+....+ ....+...+.++++++.+|+.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 31 22346899999998888999999998765432 1223334456788999999987776665 36999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccCCh
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSI 891 (1247)
Q Consensus 836 ~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~ 891 (1247)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|++..
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 195 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE 195 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 999999999999999999999999999999999999999874 58999999999864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=303.28 Aligned_cols=195 Identities=33% Similarity=0.459 Sum_probs=161.2
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ ++.+|+|+|+++++| +++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCcccc
Confidence 5677777653 235999999999999 9999999999999999999998653 48999999987643
Q ss_pred --ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000867 759 --ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1247)
Q Consensus 759 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~ 836 (1247)
...++.++|++|++.+++.+||+|++.+....+. ...++.++.++++++.+|+.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHH
Confidence 2235678999999999999999999987654431 222333456788999999987777665 469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 837 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|++|||||+.+|++++|||||+|||+.+...+.+.|+++++ +.|||+++|++.. +.+..|+
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~-~~~~~d~ 198 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVED-VESLCNQ 198 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHH-HHHhCCE
Confidence 99999999999999999999999999999999999999875 5999999999863 4445565
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=295.46 Aligned_cols=204 Identities=25% Similarity=0.335 Sum_probs=169.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCccc----ceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ----RTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~----~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...++ .-++..+|...+|++|||.||+..++..+.
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~ 108 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARL 108 (250)
T ss_pred EEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhh
Confidence 47999999999999999999999998 99999999998765543 458888999999999999999999865432
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
. +.......+ ...+..+..+...++|+.+||.+.+|+..| +||+|||||+.||
T Consensus 109 ~---~~~~l~~~~-------------------~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIA 161 (250)
T COG0411 109 G---LSGLLGRPR-------------------ARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIA 161 (250)
T ss_pred h---hhhhhcccc-------------------chhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHH
Confidence 1 000000000 000122344556789999999998887665 5999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
|||+.+|++|+||||.+||.+..+.++.+.++++.+ ..+.+|++|.|+++-+..+||||+||+.|+++..|+++++.+
T Consensus 162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 999999999999999999999999999999999865 356888889999999999999999999999999999998763
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.28 Aligned_cols=191 Identities=26% Similarity=0.326 Sum_probs=160.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.+...+..
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 97 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP 97 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 99999999876432 22457999999999999999999999865432210
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
..+....++++++.+||.+..++. ++.|||||||||+||+|
T Consensus 98 ----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~a 138 (302)
T TIGR01188 98 ----------------------------------KDEAEERAEELLELFELGEAADRP-----VGTYSGGMRRRLDIAAS 138 (302)
T ss_pred ----------------------------------HHHHHHHHHHHHHHcCChhHhCCc-----hhhCCHHHHHHHHHHHH
Confidence 001112356789999998666554 45799999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
|+++|++++|||||+|||+.++..+++.++++.+ . +++|++++|+.+++.++||+|++|++|++++.|+++++.+
T Consensus 139 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-E-GVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999999999999999998754 2 5667778999999999999999999999999999888754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=299.25 Aligned_cols=184 Identities=28% Similarity=0.352 Sum_probs=156.0
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 4677776653 24599999999999999999999999999999999998653 47999999987542
Q ss_pred --ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000867 759 --ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1247)
Q Consensus 759 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~ 836 (1247)
..+++.++|++|++.+++.+|++|++.+.... . .+++++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~----~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD----H-----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc----c-----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHH
Confidence 23456789999999888899999999875311 1 2345788999999987776664 469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCCh
Q 000867 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891 (1247)
Q Consensus 837 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 891 (1247)
|++|||+|+.+|++++|||||+|||+.+...+.+.|+++.++|+|+|+++|++..
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~ 187 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG 187 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh
Confidence 9999999999999999999999999999999999999887779999999999853
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=312.37 Aligned_cols=200 Identities=26% Similarity=0.338 Sum_probs=165.3
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++ +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 478899988763 123599999999999999999999999999999999998653 479999999886
Q ss_pred Cc---ccccceEEEeccCCC-CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 757 KQ---ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
.. ...++.+||++|++. .++..||.||+.|..... ..+.+..+++++++++.+||.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 223457999999963 345689999998764321 2333444556889999999988777765 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.+..|+
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~ 207 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQ 207 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998777999999999976 35566777
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=314.85 Aligned_cols=202 Identities=26% Similarity=0.298 Sum_probs=164.8
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|++++++... ...+.+|+|||++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 67899998874210 0124599999999999999999999999999999999998663 4799999998764
Q ss_pred c-------ccccceEEEeccCC--CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000867 758 Q-------ETFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGE 827 (1247)
Q Consensus 758 ~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 827 (1247)
. ..+++.+|||+|++ .++ ..||+||+.|..... ..+.++.+++++++++.+||. +..++.+
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP----- 143 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----
Confidence 2 13456799999986 344 479999998875322 223444456788999999996 5556554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|+++ ++.+..|+
T Consensus 144 ~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~dr 215 (290)
T PRK13634 144 FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQ 215 (290)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 479999999999999999999999999999999999999999999998764 899999999986 56667777
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=308.29 Aligned_cols=199 Identities=28% Similarity=0.369 Sum_probs=164.4
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67788887653 24599999999999999999999999999999999998653 4799999998764
Q ss_pred cc----cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000867 758 QE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 758 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 833 (1247)
.. ..++.++|++|++.+++.+|+.||+.+....+. ..+.+..+++++++++.+|+.+..+..+ +.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCHH
Confidence 31 134568999999999998999999987643221 1223344566888999999987666554 469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.++++.++|+|||+++|++. ++.+..|+
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~ 206 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCER 206 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCE
Confidence 999999999999999999999999999999999999999998777999999999984 45556666
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=324.73 Aligned_cols=195 Identities=25% Similarity=0.345 Sum_probs=161.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++..... ++.++||+|++.+++.+||+||+.|+.+......
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~ 106 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE 106 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc
Confidence 47999999999999999999999987 9999999998754322 4679999999999999999999999754210000
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
. . ...+.++.++++++.++|++..+ +.+..|||||||||+|||||
T Consensus 107 ~------~------------------------~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 107 R------P------------------------NAAAIKAKVTQLLEMVQLAHLAD-----RYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred C------C------------------------CHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHH
Confidence 0 0 00112234677899999976544 55668999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
+.+|++++|||||+|||+.++.++.+.|+++.+. .+.++++++|+..++..++|+|++|++|++++.|+++++.
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE-LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999997653 3566777999999999999999999999999999988874
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=300.56 Aligned_cols=186 Identities=29% Similarity=0.397 Sum_probs=156.9
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 67888887653 2359999999999999999999999999999999999865 34799999998753
Q ss_pred cccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000867 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1247)
Q Consensus 758 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r 837 (1247)
....++.++|++|++.+++.+|++||+.+....+. .. ++.++++++.+|+.+..+..+ +.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22245678999999888888999999987543321 11 234788999999987666554 4699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCC
Q 000867 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 838 ~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1247)
++||++|+.+|++++|||||+|||+.+...+.+.|++++++|+|||+++|++.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 188 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL 188 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 99999999999999999999999999999999999998777999999999985
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=275.83 Aligned_cols=191 Identities=23% Similarity=0.353 Sum_probs=162.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1247)
+++++||||||||||||+++|..+|. .|.|.+||+++..... .-|.|+|++.++|.+||.||+.|+.++++.++
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k- 106 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEK- 106 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCc--cceeEeccCccchhhHHHHHHHHHHHhcCCCH-
Confidence 36899999999999999999999997 9999999998865433 45899999999999999999999998877531
Q ss_pred cchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHHh
Q 000867 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1247)
.+..+++.+.+..+||++..+.. +-.|||||||||.|||||+
T Consensus 107 ---------------------------------~~R~~~a~q~l~~VgL~~~~~~~-----i~qLSGGmrQRvGiARALa 148 (259)
T COG4525 107 ---------------------------------AQRREIAHQMLALVGLEGAEHKY-----IWQLSGGMRQRVGIARALA 148 (259)
T ss_pred ---------------------------------HHHHHHHHHHHHHhCcccccccc-----eEeecchHHHHHHHHHHhh
Confidence 12233467789999998877644 4579999999999999999
Q ss_pred cCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEec--CCcEEEecCcchHHHH
Q 000867 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS--DAQIVYQGPRELVLDF 236 (1247)
Q Consensus 161 ~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~--~G~v~~~G~~~~~~~~ 236 (1247)
.+|+.|+||||+++||+-+++++.+.|.++.+.. +..++.+||+.+|+.-+++++++|+ .|+|+..-+.+....|
T Consensus 149 ~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~t-gk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 149 VEPQLLLLDEPFGALDALTREQMQELLLDLWQET-GKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred cCcceEeecCchhhHHHHHHHHHHHHHHHHHHHh-CCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 9999999999999999999999999999888764 5566679999999999999999997 5899987776654443
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=303.49 Aligned_cols=202 Identities=26% Similarity=0.403 Sum_probs=164.5
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++.. .....+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEc
Confidence 48899998876411 0013599999999999999999999999999999999998653 479999999876
Q ss_pred Cccc------c-cceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000867 757 KQET------F-TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829 (1247)
Q Consensus 757 ~~~~------~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 829 (1247)
.... . ++.++|++|++.+++.+|+.||+.+....+ .......++++.++++.+++.+..+..+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4311 1 246899999999999999999998765432 1223344567889999999987766654 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 830 lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|++.. + +..|+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~ 215 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A-ARCDR 215 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999999998654 8999999999863 3 33555
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=349.04 Aligned_cols=192 Identities=27% Similarity=0.417 Sum_probs=155.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 2 ~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+||+|+||||||||+|+|+|++.|. +|+|.+||.|+.+.. .|+++|||+||+.+|. .||+|||.++..
T Consensus 502 vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~p----- 572 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGNP----- 572 (709)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCCC-----
Confidence 7999999999999999999999997 999999999986554 4689999999887665 599999998532
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
+.+.+...++|...+ ++ -....++.+.||.||+. +.+||||||||++||||
T Consensus 573 --------------------~~~~e~i~~A~~~ag------~~--~fI~~lP~gy~t~v~E~-G~~LSGGQrQrlalARa 623 (709)
T COG2274 573 --------------------EATDEEIIEAAQLAG------AH--EFIENLPMGYDTPVGEG-GANLSGGQRQRLALARA 623 (709)
T ss_pred --------------------CCCHHHHHHHHHHhC------cH--HHHHhcccccccccccC-CCCCCHHHHHHHHHHHH
Confidence 111122222222211 11 12345899999999965 55899999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
|+++|+||+||||||+||+.++..|.+.|.+... ++|+|+ ++|.. ...+.||+|++|++|+++++|+++++..
T Consensus 624 Ll~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~-IaHRl-~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 624 LLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVII-IAHRL-STIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred hccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEE-EEccc-hHhhhccEEEEccCCceeccCCHHHHHH
Confidence 9999999999999999999999999999998743 344444 56554 5788999999999999999999999875
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=307.32 Aligned_cols=199 Identities=24% Similarity=0.317 Sum_probs=162.3
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eEEEEEEEcCc
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGY 754 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~i~g~ 754 (1247)
++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56788887763 235999999999999999999999999999999999976531 12799999998
Q ss_pred cCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 000867 755 PKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN----PLRQSLVGLP 825 (1247)
Q Consensus 755 ~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~g~~ 825 (1247)
+... ...++.++|++|+..+++ .|++||+.+....+. ..+.++.++.++++++.+|+. +..+..+
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 142 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSA--- 142 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc---
Confidence 7642 133567999999998888 999999988654331 122344456688999999997 4444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 143 --~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~ 212 (247)
T TIGR00972 143 --LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDR 212 (247)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCE
Confidence 47999999999999999999999999999999999999999999999876 489999999986 45556676
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=315.53 Aligned_cols=204 Identities=24% Similarity=0.321 Sum_probs=165.0
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|+++.++... ...+.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+
T Consensus 20 ~~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~ 89 (320)
T PRK13631 20 IILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIY 89 (320)
T ss_pred ceEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEE
Confidence 3589999998874210 0124599999999999999999999999999999999998763 47999999977
Q ss_pred CCc-------------------ccccceEEEeccCC--CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC
Q 000867 756 KKQ-------------------ETFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL 814 (1247)
Q Consensus 756 ~~~-------------------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l 814 (1247)
... ...++.+|||+|++ .+++ .||+||+.|..... ..+.++..+++.++++.+||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL 165 (320)
T PRK13631 90 IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGL 165 (320)
T ss_pred cccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCC
Confidence 532 13456799999986 3555 59999998864321 22344445678899999999
Q ss_pred C-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHH
Q 000867 815 N-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 893 (1247)
Q Consensus 815 ~-~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~ 893 (1247)
. +..+..+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ .+
T Consensus 166 ~~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~ 239 (320)
T PRK13631 166 DDSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HV 239 (320)
T ss_pred ChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HH
Confidence 6 4555443 479999999999999999999999999999999999999999999998777999999999986 35
Q ss_pred HHhhhc
Q 000867 894 FESFDE 899 (1247)
Q Consensus 894 ~~~fd~ 899 (1247)
.+..|+
T Consensus 240 ~~~adr 245 (320)
T PRK13631 240 LEVADE 245 (320)
T ss_pred HHhCCE
Confidence 556676
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=296.91 Aligned_cols=185 Identities=25% Similarity=0.355 Sum_probs=156.7
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeeEEECCCccc
Confidence 56788887653 24599999999999999999999999999999999998653 4799999998764
Q ss_pred c--ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000867 758 Q--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 758 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
. ..+++.++|++|+..+++.+||+|++.+.... .. . +..++++++.+++.+..+..+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~~----~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--SP----G--AVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--Cc----c--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 3 23456789999998888899999999876421 11 1 235788999999977666554 36999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCC
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 836 ~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1247)
||++|||+++.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|++.
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 188 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL 188 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 9999999999999999999999999999999999999998777999999999985
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=308.65 Aligned_cols=199 Identities=21% Similarity=0.268 Sum_probs=164.7
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 478999988763 24599999999999999999999999999999999998653 479999999865
Q ss_pred Cc----------------ccccceEEEeccCCCCCCCcCHHHHHHHHhh-ccCCCCCCHHHHHHHHHHHHHHcCCCccc-
Q 000867 757 KQ----------------ETFTRISGYCEQNDIHSPFVTVYESLLYSAW-LRLPPEVDSETQKMFIEEIMELVELNPLR- 818 (1247)
Q Consensus 757 ~~----------------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~v~~~l~~l~l~~~~- 818 (1247)
.. ..+++.++|++|++.+++.+|++||+.+... .. .......++++.++++.+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 31 1235678999999999999999999987542 21 123344456688999999997653
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhh
Q 000867 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 898 (1247)
Q Consensus 819 ~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd 898 (1247)
+..+ +.||||||||++|||||+.+|++++|||||+|||+.+...+.+.|++++++|+|||+++|++. ++-+..|
T Consensus 147 ~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 4443 479999999999999999999999999999999999999999999998777999999999986 3444556
Q ss_pred c
Q 000867 899 E 899 (1247)
Q Consensus 899 ~ 899 (1247)
+
T Consensus 221 ~ 221 (257)
T PRK10619 221 H 221 (257)
T ss_pred E
Confidence 6
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=309.23 Aligned_cols=191 Identities=28% Similarity=0.364 Sum_probs=156.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 104 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE 104 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhh
Confidence 47999999999999999999999987 999999998765421 246799999999899999999999886432
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
... .. .++....++++++.+||.+..++ .+..|||||||||+
T Consensus 105 ~~~---~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~ 146 (235)
T cd03261 105 HTR---LS------------------------------EEEIREIVLEKLEAVGLRGAEDL-----YPAELSGGMKKRVA 146 (235)
T ss_pred ccC---CC------------------------------HHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHH
Confidence 100 00 00112235667889999765544 45579999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
|||||+.+|++++|||||+|||+.++..+.+.++++.+. .+++|++++|+.+++..+||+|++|++|++++.|+++++
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE-LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999999999987653 355677789999999999999999999999999987665
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=325.46 Aligned_cols=191 Identities=21% Similarity=0.295 Sum_probs=161.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.... .++.+|||+|++.+|+.+||.||+.|+.+.++..
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~- 122 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP- 122 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC-
Confidence 47899999999999999999999987 999999999875432 3578999999999999999999999975432110
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
..+.++.++++++.+||.+.. ++.+.+|||||||||+|||||
T Consensus 123 ---------------------------------~~~~~~~v~~~l~~l~L~~~~-----~~~~~~LSgGq~QRVaLARAL 164 (377)
T PRK11607 123 ---------------------------------KAEIASRVNEMLGLVHMQEFA-----KRKPHQLSGGQRQRVALARSL 164 (377)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHH
Confidence 011223467789999997544 455668999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
+.+|++|||||||++||..++.++.+.++++.+.. +.+++.++|+..++..++|+|++|++|+++..|+++++.
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999999999999999998876543 566777899999999999999999999999999988864
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=317.93 Aligned_cols=196 Identities=28% Similarity=0.439 Sum_probs=162.6
Q ss_pred CcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCc
Q 000867 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1247)
Q Consensus 675 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 754 (1247)
+..++|+|+++++. +++++|+++||+|++||++||+|+|||||||++++|.+..+ .+|+|.|||.
T Consensus 349 ~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCe
Confidence 45699999999875 23459999999999999999999999999999999998654 4799999999
Q ss_pred cCCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccC
Q 000867 755 PKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-------LRQSLVGL 824 (1247)
Q Consensus 755 ~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~ 824 (1247)
++++ +..|+.+||||||..++. -||.+|+.|+. .+.+.++ |-++.+..|+.+ -.+|.+|.
T Consensus 414 dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDEE----VVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHHH----HHHHHHHcCcHHHHHhccccchhhHhh
Confidence 8754 567889999999998875 59999999863 2333333 455566666544 34555665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
. +..|||||||||++|||++++|+|+++|||||.||++|..++++.+++. ..++|+|++.|+.+ +.+.||+
T Consensus 484 r-G~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~Dk 554 (591)
T KOG0057|consen 484 R-GLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDK 554 (591)
T ss_pred c-ccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCE
Confidence 4 3469999999999999999999999999999999999999999999984 45899999999874 6677887
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=311.74 Aligned_cols=202 Identities=25% Similarity=0.331 Sum_probs=164.5
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++... ...+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 67899998874110 0123599999999999999999999999999999999998663 4899999998864
Q ss_pred c-------ccccceEEEeccCC--CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000867 758 Q-------ETFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGE 827 (1247)
Q Consensus 758 ~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 827 (1247)
. ..+++.+||++|++ .+++ .||.|++.|..... ..+.++.++++.++++.+||. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~----- 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSP----- 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCc-----
Confidence 1 13456799999986 4444 69999999875322 233455566788999999996 4555543
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+..|+
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dr 213 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADY 213 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999998777999999999984 45566777
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=296.37 Aligned_cols=183 Identities=30% Similarity=0.549 Sum_probs=153.1
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eEEEEEEEcCcc
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 755 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~i~g~~ 755 (1247)
.++|+|+++.++.+ .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999998632 13457999999999999999999999999999999999986522 458999999987
Q ss_pred CCc--ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000867 756 KKQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 756 ~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 833 (1247)
... ...++.++|++|++.+++.+||+||+.+....+ .+.. ...||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234567899999999999999999997753211 1222 2469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||++|||||+.+|++++|||||+|||+.++..+.+.++++.++ +.|+|+++|+...++.+..|+
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~ 189 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDK 189 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCe
Confidence 999999999999999999999999999999999999999998765 678888888877777777776
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=313.64 Aligned_cols=203 Identities=24% Similarity=0.303 Sum_probs=163.8
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++... .....+|+|+|++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 77899998874210 0123599999999999999999999999999999999998663 4799999986531
Q ss_pred ---------------------------cccccceEEEeccCC-CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 000867 758 ---------------------------QETFTRISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIM 809 (1247)
Q Consensus 758 ---------------------------~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l 809 (1247)
....++.+|||+|++ ..+...||+|++.|..... ..+.++.++++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 112356789999985 2334579999998865422 234455566789999
Q ss_pred HHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecc
Q 000867 810 ELVELN-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 888 (1247)
Q Consensus 810 ~~l~l~-~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 888 (1247)
+.+||. +..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+
T Consensus 150 ~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 5666654 4799999999999999999999999999999999999999999999988779999999999
Q ss_pred CChHHHHhhhc
Q 000867 889 PSIDIFESFDE 899 (1247)
Q Consensus 889 ~~~~~~~~fd~ 899 (1247)
+. .+.+..|+
T Consensus 225 ~~-~~~~~adr 234 (305)
T PRK13651 225 LD-NVLEWTKR 234 (305)
T ss_pred HH-HHHHhCCE
Confidence 85 34566676
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=312.63 Aligned_cols=201 Identities=24% Similarity=0.307 Sum_probs=166.9
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++.. +.+.+|+|+|++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 47899999887411 123599999999999999999999999999999999998653 489999999886
Q ss_pred Cc---ccccceEEEeccCCC-CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 757 KQ---ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
.. ...++.+||++|++. .++..||+||+.|..... ..+.++.+++++++++.+||.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567899999973 667789999998864322 2344455567899999999988777665 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++.. + ...|+
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dr 209 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDR 209 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999998765 8999999999864 3 45676
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=312.88 Aligned_cols=203 Identities=22% Similarity=0.337 Sum_probs=164.6
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|..++ ..|+|.+||.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 367899998874110 0124699999999999999999999999999999999998663 479999999876
Q ss_pred Cc-------ccccceEEEeccCC--CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 000867 757 KQ-------ETFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPG 826 (1247)
Q Consensus 757 ~~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~ 826 (1247)
.. ...++.+|||+|++ .+++ .||.||+.|..... ..+.++.++++.++++.+||. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---- 143 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSP---- 143 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc----
Confidence 42 13456799999986 3444 59999998864322 233445556788999999996 5666554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccCChHHHHhhhc
Q 000867 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 827 ~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +|+|||+++|++. ++.+..|+
T Consensus 144 -~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dr 215 (286)
T PRK13646 144 -FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADE 215 (286)
T ss_pred -ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 47999999999999999999999999999999999999999999999875 4899999999986 35566776
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=320.77 Aligned_cols=191 Identities=26% Similarity=0.357 Sum_probs=160.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.+||++|++.+++.+||+||+.+.....+..
T Consensus 69 i~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 145 (340)
T PRK13536 69 CFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS 145 (340)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 99999999987532 23467999999999999999999998754332100
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
. .+....++++++.++|++..++.+ ++||||||||++||+|
T Consensus 146 ----------~------------------------~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 146 ----------T------------------------REIEAVIPSLLEFARLESKADARV-----SDLSGGMKRRLTLARA 186 (340)
T ss_pred ----------H------------------------HHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHHHHHHHHHHH
Confidence 0 001123456788899987766655 4799999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
|+++|++++|||||+|||+.++.++++.++++.+ .+++|++++|+.+++.++||+|++|++|++++.|+++++.+
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~--~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999854 35677778999999999999999999999999999988764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=306.64 Aligned_cols=203 Identities=23% Similarity=0.257 Sum_probs=159.6
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 2 KIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred eEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 5778877663 235999999999999999999999999999999999974111357999999987643
Q ss_pred c---cc-cceEEEeccCCCCCCCcCHHHHHHHHhhccCCC----CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCC
Q 000867 759 E---TF-TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP----EVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESG 829 (1247)
Q Consensus 759 ~---~~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~----~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~ 829 (1247)
. .. +..++|++|++.+++.+|++|++.+........ ..+.+..+++++++++.+||. +..+..++ ..
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 144 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EG 144 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cC
Confidence 1 11 234799999999999999999998764322110 112233345678899999997 34555432 24
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHh-hhc
Q 000867 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFES-FDE 899 (1247)
Q Consensus 830 lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-fd~ 899 (1247)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|+++. +... .|+
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~-~~~~~~d~ 214 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL-LNYIKPDY 214 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHH-HHhhcCCe
Confidence 99999999999999999999999999999999999999999999987778999999999853 3333 355
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=311.50 Aligned_cols=200 Identities=27% Similarity=0.303 Sum_probs=166.3
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
-++++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 4789999887631 124599999999999999999999999999999999998763 489999999886
Q ss_pred Ccc---cccceEEEeccCCC-CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 757 KQE---TFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 757 ~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
... ..++.+||++|++. .++..||.||+.+..... ....++.+++++++++.+||.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 532 33567899999973 666789999998865432 1233444567889999999988777765 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++.. + ...|+
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~-~~~d~ 209 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-A-AQADR 209 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-H-HcCCE
Confidence 9999999999999999999999999999999999999999998865 8999999999864 3 34676
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=288.42 Aligned_cols=191 Identities=23% Similarity=0.350 Sum_probs=155.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP----QRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~----~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+||||+||||||++|+|..++. +|+|.++|++++.... ++-++||||....|+.+||+|||..++....
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~ 107 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARR 107 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccc
Confidence 58999999999999999999999976 9999999999976543 3579999999999999999999998764321
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhC-CcccccccccCCccccccccccchhHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLG-LEVCDDTLVGDEMVRGISGGQKKRVTT 155 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrqRvsi 155 (1247)
. ++.. + ...+++.+.+- |.+-. ++...+|||||||-++|
T Consensus 108 ~-~~~~------~----------------------------~~~e~v~~lFP~Lker~-----~~~aG~LSGGEQQMLAi 147 (237)
T COG0410 108 D-KEAQ------E----------------------------RDLEEVYELFPRLKERR-----NQRAGTLSGGEQQMLAI 147 (237)
T ss_pred c-cccc------c----------------------------ccHHHHHHHChhHHHHh-----cCcccCCChHHHHHHHH
Confidence 1 0000 0 00122222221 22112 24455799999999999
Q ss_pred HHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 156 A~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
||||+++|++|+|||||.||-|.-..+|.+.++++.+. .+.+|+.+.|+...+.+++||.++|++|++++.|+.+++.+
T Consensus 148 aRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 148 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred HHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998764 45788889999999999999999999999999999988763
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=305.44 Aligned_cols=198 Identities=24% Similarity=0.328 Sum_probs=163.0
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecc
Confidence 67888887763 23599999999999999999999999999999999998653 4799999998752
Q ss_pred c---------ccccceEEEeccCCCCCCCcCHHHHHHHH-hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000867 758 Q---------ETFTRISGYCEQNDIHSPFVTVYESLLYS-AWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827 (1247)
Q Consensus 758 ~---------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 827 (1247)
. ...++.++|++|++.+++.+|+.||+.+. .... ....++..+++.++++.+|+.+..+..+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP----- 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 0 12345689999999999999999999643 2221 1223334456788999999987777665
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.||||||||++|||||+.+|++++|||||+|||+.+...+.+.|+++.++|+|+|+++|++. ++-+..|+
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~ 210 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASR 210 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCE
Confidence 469999999999999999999999999999999999999999999998767899999999986 34445565
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=310.50 Aligned_cols=198 Identities=22% Similarity=0.293 Sum_probs=163.8
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++ +++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECC
Confidence 56788887653 123599999999999999999999999999999999998653 4799999998764
Q ss_pred c----ccccceEEEeccCCC-CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 758 Q----ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 758 ~----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
. ...++.+||++|++. .+...|+.||+.+..... ..+....++.++++++.+||.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 3 233567899999975 356689999998765332 2234444566889999999988777765 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++.. + ...|+
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~ 204 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADR 204 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCE
Confidence 99999999999999999999999999999999999999999987779999999999874 3 44666
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=320.66 Aligned_cols=187 Identities=23% Similarity=0.270 Sum_probs=159.7
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc---c----ccceEEEeccCCCC
Q 000867 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FTRISGYCEQNDIH 774 (1247)
Q Consensus 702 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~~~v~q~~~~ 774 (1247)
...+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... . .++.+||++|+..+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 34689999999999999999999999999999999998763 479999999886431 1 23568999999999
Q ss_pred CCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000867 775 SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 854 (1247)
Q Consensus 775 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lD 854 (1247)
++.+||+||+.+....+. ...++.+++++++++.+||.+..++.+ +.||||||||++|||||+.+|++|+||
T Consensus 118 ~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999998765431 233444567889999999988777765 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccCChHHHHhhhc
Q 000867 855 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 855 EptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.++.|+
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dr 234 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDR 234 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCE
Confidence 99999999999999999999865 4899999999986 45666777
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=298.00 Aligned_cols=188 Identities=24% Similarity=0.307 Sum_probs=159.9
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|++++++ ++.+++|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 588999987653 23599999999999999999999999999999999998653 479999999876
Q ss_pred CcccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000867 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1247)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~ 836 (1247)
.....++.++|++|++.+++.+|++|++.+....+. .. .++.++++++.+++.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543344568999999988888999999987654321 11 2234678899999987777665 469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCC
Q 000867 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 837 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1247)
|++|||+++.+|++++|||||+|||+.+...+.+.|+++.++|+|||+++|++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY 198 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 999999999999999999999999999999999999998878899999999985
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=311.09 Aligned_cols=201 Identities=25% Similarity=0.382 Sum_probs=165.9
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|+++.++ +++.+|+|+|++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~ 69 (283)
T PRK13636 4 YILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKP 69 (283)
T ss_pred ceEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEE
Confidence 3588999998773 124599999999999999999999999999999999998653 48999999988
Q ss_pred CCc-----ccccceEEEeccCCCC-CCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000867 756 KKQ-----ETFTRISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829 (1247)
Q Consensus 756 ~~~-----~~~~~~~~~v~q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 829 (1247)
... ..+++.+||++|++.. +...|++||+.+..... ..+.+..+++++++++.+||.+..++.+ +.
T Consensus 70 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 141 (283)
T PRK13636 70 IDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HC 141 (283)
T ss_pred CCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----cc
Confidence 631 2345679999999742 34579999998764322 2234444567889999999988777765 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 830 lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++. +.+..|+
T Consensus 142 LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~-~~~~~dr 211 (283)
T PRK13636 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI-VPLYCDN 211 (283)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCE
Confidence 9999999999999999999999999999999999999999999998765 8999999999864 4456676
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=305.54 Aligned_cols=202 Identities=23% Similarity=0.260 Sum_probs=163.2
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 753 (1247)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 377888887763 235999999999999999999999999999999999976421 3589999999
Q ss_pred ccCCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccCCC
Q 000867 754 YPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL----RQSLVGLPG 826 (1247)
Q Consensus 754 ~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~~g~~~ 826 (1247)
.++.. ..+++.+||++|++.+++.+||+||+.+....+.. ....++.++.++++++.+||.+. .++.
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 143 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP----- 143 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----
Confidence 87642 23456789999999888899999999886533211 11223344568889999998642 3333
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 827 ~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
...||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ |+|+|+++|++. .+.+..|+
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~ 214 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDY 214 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCE
Confidence 357999999999999999999999999999999999999999999999854 799999999986 45556676
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=321.94 Aligned_cols=190 Identities=27% Similarity=0.477 Sum_probs=160.5
Q ss_pred CcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCc
Q 000867 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1247)
Q Consensus 675 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 754 (1247)
+..++.+|+++.++ +++++++|+|++++||+++||+|+||||||||+++|+|..++ .+|+|.+||.
T Consensus 318 ~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng~ 383 (559)
T COG4988 318 PIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGI 383 (559)
T ss_pred CceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCc
Confidence 45677779998874 234799999999999999999999999999999999998764 5899999998
Q ss_pred cCC---cccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc------ccccCC
Q 000867 755 PKK---QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ------SLVGLP 825 (1247)
Q Consensus 755 ~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~------~~~g~~ 825 (1247)
+.. ...+++.++||+|++.+++ -|++||+.++. + +.+ ++.+.++++..||.+..+ +.+| +
T Consensus 384 ~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~----~-~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ig-e 452 (559)
T COG4988 384 DLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR----P-DAS----DEEIIAALDQAGLLEFVPKPDGLDTVIG-E 452 (559)
T ss_pred cccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC----C-cCC----HHHHHHHHHHhcHHHhhcCCCcccchhc-c
Confidence 764 4568899999999998887 59999998752 1 222 334677888888876554 3444 3
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCC
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1247)
++++|||||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++|||++||++.
T Consensus 453 ~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~ 516 (559)
T COG4988 453 GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE 516 (559)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH
Confidence 5678999999999999999999999999999999999999999999999886 599999999985
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-33 Score=304.85 Aligned_cols=197 Identities=23% Similarity=0.352 Sum_probs=161.0
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
-++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEec
Confidence 478899988763 23599999999999999999999999999999999998653 479999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCC
Q 000867 757 KQE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV-ELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 757 ~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~g~~~~~~lS 831 (1247)
... ..++.++|++|+..+++.+||.||+.+..... ..+..++.++++++.+ ++.+..+... +.||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-----GTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-----hhCC
Confidence 432 13456999999999999999999998754221 1122234566777777 4665555443 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 206 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADR 206 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCE
Confidence 99999999999999999999999999999999999999999998777999999999985 45566666
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=324.49 Aligned_cols=191 Identities=25% Similarity=0.367 Sum_probs=159.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+|||||||||||++|+|..+|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.|+.+..+..
T Consensus 31 ~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~- 106 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK- 106 (369)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCC-
Confidence 47999999999999999999999987 999999998875432 2467999999999999999999999875432110
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
..+.+..++++++.+||.+..+ +.+.+|||||||||+|||||
T Consensus 107 ---------------------------------~~~~~~~~~~~l~~lgL~~~~~-----~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 107 ---------------------------------KEEINQRVNQVAEVLQLAHLLD-----RKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCChhhhc-----CChhhCCHHHHHHHHHHHHH
Confidence 0011224567889999976554 44567999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
+.+|+++||||||+|||+.++.++.+.|+++.+.. +++++.++|+.+++..++|+|++|++|+++..|+++++.
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999876533 556777899999999999999999999999999988764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=298.81 Aligned_cols=181 Identities=27% Similarity=0.338 Sum_probs=151.0
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc-cccceEEEeccCCCCCCCcCHHHHHHH
Q 000867 708 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFTRISGYCEQNDIHSPFVTVYESLLY 786 (1247)
Q Consensus 708 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~ 786 (1247)
|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 99999999999999999999999999999998753 479999999876432 234578999999999999999999987
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 000867 787 SAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866 (1247)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~ 866 (1247)
....+. .. .+..+++++++++.+|+.+..++.+ ..||||||||++|||||+.+|++++|||||+|||..++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 543211 11 1233456789999999987777665 469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 867 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 867 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.+.+.|++++++ |+|||+++|++. ++-+..|+
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 198 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQR 198 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCE
Confidence 999999998754 899999999985 34445565
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=305.53 Aligned_cols=200 Identities=23% Similarity=0.276 Sum_probs=160.9
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 753 (1247)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999988763 235999999999999999999999999999999999976532 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN----PLRQSLVGL 824 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~g~ 824 (1247)
.++.. ...++.++|++|++.+++ +||+||+.+....+. .......++.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87532 234567999999988875 899999988653321 112333455678889998874 233443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +++|||+++|+++ .+.+..|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~ 218 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDR 218 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCE
Confidence 35799999999999999999999999999999999999999999999985 4799999999986 34455666
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=305.87 Aligned_cols=202 Identities=23% Similarity=0.251 Sum_probs=162.8
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 753 (1247)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478899988763 235999999999999999999999999999999999986532 2489999999
Q ss_pred ccCC--c---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000867 754 YPKK--Q---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1247)
Q Consensus 754 ~~~~--~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 824 (1247)
.++. . ..+++.++|++|++.+++.+|+.||+.+....+. .....+..++.++++++.+|+.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8764 1 2345678999999999999999999987654321 11123334456788999999853 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
...||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. .+.+..|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~ 217 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDY 217 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCE
Confidence 357999999999999999999999999999999999999999999999865 699999999986 35556676
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=345.28 Aligned_cols=189 Identities=27% Similarity=0.417 Sum_probs=157.8
Q ss_pred CcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCc
Q 000867 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1247)
Q Consensus 675 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 754 (1247)
...++++|++++++. ++++|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 332 ~~~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~i~g~ 397 (529)
T TIGR02868 332 KPTLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP--LQGEVTLDGV 397 (529)
T ss_pred CceEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCE
Confidence 346999999998841 23599999999999999999999999999999999998763 4899999998
Q ss_pred cCCc--ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000867 755 PKKQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1247)
Q Consensus 755 ~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 825 (1247)
++.+ ..+++.++||+|++.+++ -|++||+.++. + +.+ +++++++++..++.+. .|+.+|..
T Consensus 398 ~i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 467 (529)
T TIGR02868 398 SVSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR----P-DAT----DEELWAALERVGLADWLRSLPDGLDTVLGEG 467 (529)
T ss_pred EhhhHHHHHHhheEEEccCccccc-ccHHHHHhccC----C-CCC----HHHHHHHHHHcCCHHHHHhCcccccchhccc
Confidence 7653 445678999999999886 49999998752 1 222 2346677887777543 36777753
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccC
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 889 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 889 (1247)
+.+||||||||++|||||+++|+||+||||||+||++++..|++.+++.. +++|+|+++|++
T Consensus 468 -G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 468 -GARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 45799999999999999999999999999999999999999999999763 579999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=305.89 Aligned_cols=199 Identities=24% Similarity=0.303 Sum_probs=163.9
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 35788887763 23599999999999999999999999999999999998653 4899999998763
Q ss_pred c----------------ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 000867 758 Q----------------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821 (1247)
Q Consensus 758 ~----------------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ 821 (1247)
. ...++.++|++|++.+++..|+.||+.+..... ........++.++++++.+|+.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 123567899999999999999999998753211 1123344455688999999998776665
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 822 ~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
. +.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++ |+|+|+++|++. ++.+..|+
T Consensus 144 ~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~ 216 (252)
T TIGR03005 144 P-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADR 216 (252)
T ss_pred h-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCE
Confidence 4 469999999999999999999999999999999999999999999998764 899999999986 35556666
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=308.77 Aligned_cols=201 Identities=24% Similarity=0.303 Sum_probs=165.1
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~ 72 (271)
T PRK13632 6 VMIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGIT 72 (271)
T ss_pred eEEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEe
Confidence 35889999887631 124699999999999999999999999999999999998653 47999999988
Q ss_pred CCc---ccccceEEEeccCCC-CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 756 KKQ---ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
+.. ..+++.++|++|++. .++.+|++||+.+..... ....+..+++++++++.+||.+..++.+ +.||
T Consensus 73 i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 144 (271)
T PRK13632 73 ISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLS 144 (271)
T ss_pred cCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCC
Confidence 643 234567899999974 567789999998764322 1233444556889999999988777765 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ ++|||+++|++.. + ...|+
T Consensus 145 ~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~ 211 (271)
T PRK13632 145 GGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADK 211 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCE
Confidence 99999999999999999999999999999999999999999998765 5899999999864 2 34565
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=310.71 Aligned_cols=204 Identities=25% Similarity=0.307 Sum_probs=163.8
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 367889888764110 0124699999999999999999999999999999999998763 489999999876
Q ss_pred Cc-------ccccceEEEeccCCC-CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000867 757 KQ-------ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGE 827 (1247)
Q Consensus 757 ~~-------~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 827 (1247)
.. ...++.+||++|++. .+..+||.||+.|..... ....+..+++++++++.+||. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP----- 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----
Confidence 32 123457899999963 233579999998765332 223444556788999999997 5666665
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|++. .+.+..|+
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~ 214 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADD 214 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 469999999999999999999999999999999999999999999998777999999999985 35556666
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=303.89 Aligned_cols=200 Identities=26% Similarity=0.300 Sum_probs=162.9
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecC
Confidence 67888887653 23599999999999999999999999999999999998653 4799999998764
Q ss_pred cc----cccceEEEeccCCCCCCCcCHHHHHHHHhhccCC-----CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000867 758 QE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-----PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1247)
Q Consensus 758 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 828 (1247)
.. ..++.++|++|++.+++.+||+||+.+....... .....+..+++++++++.+|+.+..+..+ +
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 31 1234689999999999999999999876432100 00112334456889999999987776665 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~ 211 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADK 211 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCE
Confidence 6999999999999999999999999999999999999999999999865 789999999986 35556666
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=306.33 Aligned_cols=198 Identities=25% Similarity=0.352 Sum_probs=162.9
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 67888887763 2359999999999999999999999999999999999865 34799999998754
Q ss_pred c---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000867 758 Q---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1247)
Q Consensus 758 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 834 (1247)
. ...++.++|++|++.+++.+||+||+.+..... ....+..++.++++++.+|+.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 223456899999998888899999998754221 1112233456788999999987777765 4699999
Q ss_pred HHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeccCChHHHHhhhc
Q 000867 835 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 835 r~r~~ia~~l~------~~p~il~lDEptsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||++||+||+ .+|++|+|||||+|||+.++..+.+.|+++. ++|+|||+++|++. .+.+..|+
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 210 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADR 210 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCE
Confidence 99999999999 5999999999999999999999999999987 56899999999985 34456666
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=323.74 Aligned_cols=192 Identities=25% Similarity=0.378 Sum_probs=151.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC---cccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF---VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
.|||+|+||||||||+++|+|+.+|+ +|+|.+||.+.++. .++++++||+|++.+++. |+||||.++..-..
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~~s- 423 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPDAS- 423 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCCcCC-
Confidence 48999999999999999999999987 99999999887654 467899999999887765 99999998632100
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
..++....+. ..+.+.+.-+.+.||.+|+ ++++|||||+|||++||
T Consensus 424 ------~e~i~~al~~---------------------------a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLAR 469 (559)
T COG4988 424 ------DEEIIAALDQ---------------------------AGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALAR 469 (559)
T ss_pred ------HHHHHHHHHH---------------------------hcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHH
Confidence 0000000000 0112223335678999996 56689999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 158 al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
||+++++++++||||++||.++++.|.+.+.++++ + +++++++|.. +....+|+|++|++|++++.|.++++.+
T Consensus 470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~-ktvl~itHrl-~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--Q-KTVLVITHRL-EDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--C-CeEEEEEcCh-HHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999999999999999999999999765 3 4555577765 4556679999999999999999998853
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=287.21 Aligned_cols=191 Identities=28% Similarity=0.385 Sum_probs=163.6
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCccc----ccceEEEeccCCCCCC
Q 000867 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET----FTRISGYCEQNDIHSP 776 (1247)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~~~v~q~~~~~~ 776 (1247)
+...+++|||+++++||++||+||||||||||+|+|+|..++ ..|+|.++|.++.... .+.-++.-+|...+|+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 456799999999999999999999999999999999998764 4799999999876432 2334678899999999
Q ss_pred CcCHHHHHHHHhhcc--------CCCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000867 777 FVTVYESLLYSAWLR--------LPPE-VDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVAN 847 (1247)
Q Consensus 777 ~ltv~e~l~~~~~~~--------~~~~-~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~ 847 (1247)
.|||.||+..++..+ .+.. ...++..++..++|+.+||.+.+|...| +||+||+|||.|||||+++
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 999999998775433 1111 1234456678899999999999999976 5999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 848 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 848 p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|++|+||||.+||.+....++.+.|+++.++ |.||+++-|+.+. ++.+-|+
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dr 219 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADR 219 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccE
Confidence 9999999999999999999999999999874 6999999999874 6777777
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=305.29 Aligned_cols=200 Identities=25% Similarity=0.301 Sum_probs=161.2
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eEEEEEEEc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITIS 752 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~i~ 752 (1247)
..++++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..+.. +.+|+|.++
T Consensus 11 ~~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 77 (258)
T PRK14268 11 PQIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIE 77 (258)
T ss_pred eeEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEEC
Confidence 3588999987653 235999999999999999999999999999999999976421 258999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000867 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVG 823 (1247)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g 823 (1247)
|.++.. ..+++.++|++|++.+++ +|++||+.+....+ ..+.+..+++++++++.+++.+ ..++.
T Consensus 78 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 151 (258)
T PRK14268 78 GEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP-- 151 (258)
T ss_pred CEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC--
Confidence 987532 124567999999988888 89999998865432 1233344456788999998842 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 824 ~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++.. +.+..|+
T Consensus 152 ---~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~-~~~~~d~ 222 (258)
T PRK14268 152 ---ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQ-AARISDY 222 (258)
T ss_pred ---hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHH-HHHhCCE
Confidence 347999999999999999999999999999999999999999999999864 7999999999853 4444565
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=306.15 Aligned_cols=202 Identities=23% Similarity=0.246 Sum_probs=163.6
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 478899987763 2459999999999999999999999999999999999865 3489999999876
Q ss_pred Ccc---c-ccceEEEeccCCCCCCCcCHHHHHHHHhhccCC----------C--CCCHHHHHHHHHHHHHHcCCCccccc
Q 000867 757 KQE---T-FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP----------P--EVDSETQKMFIEEIMELVELNPLRQS 820 (1247)
Q Consensus 757 ~~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~----------~--~~~~~~~~~~v~~~l~~l~l~~~~~~ 820 (1247)
... . .+..++|++|++.+++.+||+||+.+....... . .....+..+.++++++.+|+.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 233478999999999999999999875421110 0 00112233467888999999877666
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 821 ~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.+ +.||||||||++||+||+.+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 65 469999999999999999999999999999999999999999999998765 899999999986 44555666
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=291.43 Aligned_cols=176 Identities=59% Similarity=0.918 Sum_probs=149.0
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++.. ..++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47889998877421 012469999999999999999999999999999999999643223589999999876
Q ss_pred CcccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000867 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1247)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~ 836 (1247)
. ...++.++|++|++.+++.+|++||+.+...+ + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhH
Confidence 5 34456789999999899999999999864210 0 49999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 837 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++.++.+..|+
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~ 178 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDR 178 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCE
Confidence 999999999999999999999999999999999999998777899999999997656677776
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=299.46 Aligned_cols=192 Identities=24% Similarity=0.337 Sum_probs=160.4
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 4677776553 2459999999999999999999999999999999999865 348999999987653
Q ss_pred ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000867 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838 (1247)
Q Consensus 759 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~ 838 (1247)
.. .+.++|++|++.+++.+|++||+.+....+. .. ++++.++++.+|+.+..+..+ ..||||||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 32 2468999999998888999999987654331 11 234678899999988777654 46999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 839 ~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+||||++.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+..|+
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~ 193 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADH 193 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCE
Confidence 9999999999999999999999999999999999998777899999999986 35555666
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=306.60 Aligned_cols=201 Identities=26% Similarity=0.344 Sum_probs=163.6
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 67888887653 2469999999999999999999999999999999999765 34799999998753
Q ss_pred c---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000867 758 Q---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 758 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 833 (1247)
. ...++.++|++|+..+++.+|+.|++.+....... .....+..+++++++++.+|+.+..++.+ +.||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHH
Confidence 2 23345689999999888889999999875311000 01111223456788999999987777664 469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~ 207 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDH 207 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCE
Confidence 999999999999999999999999999999999999999998777899999999986 45566676
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=307.10 Aligned_cols=203 Identities=27% Similarity=0.365 Sum_probs=165.0
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 10 ~~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~ 74 (265)
T PRK10575 10 TTFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQP 74 (265)
T ss_pred ceEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEe
Confidence 3588999987763 2359999999999999999999999999999999999865 347999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
+.. ..+++.++|++|+..+++.+|+.||+.+....... ........+++++++++.+++.+..++.+ +.||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 149 (265)
T PRK10575 75 LESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLS 149 (265)
T ss_pred hhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCC
Confidence 532 23345789999998888889999999875321110 00111223456788999999987767665 3699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 150 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~ 217 (265)
T PRK10575 150 GGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDY 217 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998764 899999999986 45566676
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=290.62 Aligned_cols=177 Identities=50% Similarity=0.835 Sum_probs=151.3
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CCCeEEEEEEEcCc
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNITISGY 754 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~--~~~~~~G~i~i~g~ 754 (1247)
.++++|+++.++... ...++.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 578999988774210 001246999999999999999999999999999999999986 5 45899999999
Q ss_pred cCCcccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000867 755 PKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1247)
Q Consensus 755 ~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 834 (1247)
+......++.++|++|++.+++.+|++||+.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8765445677999999999889999999997642110 499999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 835 r~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||++|||||+.+|++++|||||+|||..++..+.+.|+++.++|+|+|+++|++..++.+..|+
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~ 181 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDK 181 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCE
Confidence 99999999999999999999999999999999999999998767999999999998777777787
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=312.75 Aligned_cols=215 Identities=20% Similarity=0.219 Sum_probs=168.5
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
.-++++|++++++............+...+++|||++|++||++||+|+||||||||+++|+|..+. .+|+|.++|.+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEE
Confidence 3588999998775321000000001235699999999999999999999999999999999998763 47999999988
Q ss_pred CCcc------cccceEEEeccCC--CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 000867 756 KKQE------TFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPG 826 (1247)
Q Consensus 756 ~~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~ 826 (1247)
+... .+++.++||+|++ .++|.+|+.|++.+......+ ..+.++.++++.++++.+||. +..++..
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~p---- 159 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRYP---- 159 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCCc----
Confidence 6431 2356799999997 578899999999876443211 234455566788999999994 3445543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 827 ~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
..||||||||++|||||+.+|++|++||||+|||..++..+++.|+++.++ |.|+|++||++. .+.+..|+
T Consensus 160 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dr 231 (331)
T PRK15079 160 -HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDR 231 (331)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999998764 899999999985 34445566
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=282.49 Aligned_cols=187 Identities=24% Similarity=0.371 Sum_probs=169.4
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCcCH
Q 000867 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780 (1247)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv 780 (1247)
+++.+++|+||.++||+++|++|||||||||++++|.|...+ .+|+|.++|.+.+... +.++||.|.+--++|.+||
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~tv 89 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMTV 89 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcchhhhh-hhhcccChhhhccCccCcH
Confidence 457899999999999999999999999999999999998763 5899999999987643 4568999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000867 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860 (1247)
Q Consensus 781 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgL 860 (1247)
.|.|.|-|.++ .++.++.++.++.+|+.+++.......+ +.||.|++|++.+-.+++++|++++||||+|||
T Consensus 90 ~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 90 EDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred HHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 99999999887 4566777788999999999998887776 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 861 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 861 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||.+.+.+-+.+.++.++|.|||+++|+.. .+-++.|+
T Consensus 162 DPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~ 199 (300)
T COG4152 162 DPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDR 199 (300)
T ss_pred ChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhh
Confidence 999999999999999999999999999985 45667777
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=297.40 Aligned_cols=202 Identities=23% Similarity=0.341 Sum_probs=165.9
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.+... .+.+.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5688888765310 112569999999999999999999999999999999999765 34899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 758 QE------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 758 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
.. ..++.++|++|++.+++.+|+.||+.+...... ....++.++.++++++.+|+.+..+..+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 21 245679999999999998999999988654321 1233444567889999999987776664 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +++|||+++|+++ +.+..|+
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~ 210 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADR 210 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCE
Confidence 9999999999999999999999999999999999999999999875 4899999999985 3455665
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=307.34 Aligned_cols=199 Identities=25% Similarity=0.343 Sum_probs=164.4
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++ +++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67889888763 12359999999999999999999999999999999999865 34899999998764
Q ss_pred c---ccccceEEEeccCCC-CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000867 758 Q---ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 758 ~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 833 (1247)
. ...++.++|++|++. .+...||.||+.+..... ..+.+..+++++++++.+||.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999974 234579999998765322 2334445567889999999988777765 469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+..|+
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~dr 207 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADY 207 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998765 899999999986 45566676
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=319.88 Aligned_cols=191 Identities=23% Similarity=0.327 Sum_probs=159.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 33 i~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~ 109 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLEL 109 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999987 999999998875432 146799999999999999999999987543
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
.+.. . .+.+..++++++.+||++..+. .+..|||||||||+
T Consensus 110 ~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~qRv~ 150 (343)
T PRK11153 110 AGTP----------K------------------------AEIKARVTELLELVGLSDKADR-----YPAQLSGGQKQRVA 150 (343)
T ss_pred cCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHH
Confidence 2110 0 0111235678899999765544 45579999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++.++||+|++|++|++++.|+.+++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRE-LGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998653 3566777899999999999999999999999999987764
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=304.11 Aligned_cols=201 Identities=20% Similarity=0.266 Sum_probs=162.3
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 753 (1247)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 377899988763 235999999999999999999999999999999999976421 2589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 824 (1247)
.++.. ...++.++|++|++.+++.+||+||+.+....+. ..+.+..++.++++++.+|+.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87631 2345678999999999999999999987654321 1123344556788999999842 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
...||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++ +++|||+++|++. ++.+..|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~-~~~~~~d~ 216 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQ-QAARVSDQ 216 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhCCE
Confidence 35799999999999999999999999999999999999999999999985 4689999999986 34555666
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=308.75 Aligned_cols=202 Identities=24% Similarity=0.314 Sum_probs=161.2
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 67889988764110 0113599999999999999999999999999999999998653 4899999998764
Q ss_pred c-------ccccceEEEeccCC--CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000867 758 Q-------ETFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGE 827 (1247)
Q Consensus 758 ~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~ 827 (1247)
. ...++.++|++|++ .+++ .|++||+.+..... ..+.+..++.++++++.+||.+ ..+..+
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 143 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNP----- 143 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----
Confidence 2 12356789999996 3444 69999998764322 1233444556788999999963 445544
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+..|+
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~ 214 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADF 214 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCE
Confidence 469999999999999999999999999999999999999999999998777899999999985 44455666
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=302.10 Aligned_cols=189 Identities=30% Similarity=0.364 Sum_probs=155.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP 104 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999887 99999999876432 22357999999998899999999999864322100
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
.++....++++++.+||++..++. +..||||||||++||||
T Consensus 105 ----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la~a 145 (220)
T cd03265 105 ----------------------------------GAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEIARS 145 (220)
T ss_pred ----------------------------------HHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHH
Confidence 001122356789999997655544 45799999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcch
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPREL 232 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~ 232 (1247)
++.+|++++|||||+|||+.++..+.+.++++.+. .+++|++++|+.+++...+|++++|++|++++.|++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999999999987653 25567778999999999999999999999999987654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=301.16 Aligned_cols=188 Identities=29% Similarity=0.383 Sum_probs=155.9
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc--ccccceEEEec-cCCCCCCC
Q 000867 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFTRISGYCE-QNDIHSPF 777 (1247)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~-q~~~~~~~ 777 (1247)
+.+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 345799999999999999999999999999999999998653 47999999986432 23456789997 55677788
Q ss_pred cCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000867 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 857 (1247)
Q Consensus 778 ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpt 857 (1247)
+|++|++.+....+ ....++..+.++++++.+|+.+..++.+ +.||||||||++||++|+.+|++++|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998765433 1223344456788999999988777765 369999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 858 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 858 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+|||+.++..+.+.|++++++ ++|||+++|++. ++-+..|+
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~ 223 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARR 223 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999998754 799999999986 44555665
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=282.21 Aligned_cols=197 Identities=28% Similarity=0.393 Sum_probs=159.5
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|++..|. +.++|++||+++++||+++|+|||||||||||++|+|..+. .+|+|.++|.++.
T Consensus 4 L~v~~l~~~YG-------------~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGYG-------------KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeeccc-------------ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecC
Confidence 66788876653 45799999999999999999999999999999999998763 4799999999976
Q ss_pred cc----cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCH
Q 000867 758 QE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE-LNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 758 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~g~~~~~~lSg 832 (1247)
.. ..++-++||||....||.|||+|||..++..+.. ++..+..++++.+.+= |.+..+...| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 42 3355689999999999999999999987654422 1111222667777763 5666666655 5999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||+|-++|||||+.+|++|+|||||.||-|.-..+|.+.|+++.++ |.||+.+-+.-. ...+.-|+
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr 206 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADR 206 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCE
Confidence 9999999999999999999999999999999999999999999866 668888776543 34455565
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=302.73 Aligned_cols=206 Identities=23% Similarity=0.319 Sum_probs=161.7
Q ss_pred CcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCeEEEEEEE
Q 000867 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITI 751 (1247)
Q Consensus 675 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~---~~~~~G~i~i 751 (1247)
|..++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... ..+.+|+|.+
T Consensus 4 ~~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 70 (253)
T PRK14242 4 PPKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL 70 (253)
T ss_pred CcEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE
Confidence 34689999998763 1359999999999999999999999999999999999642 1134799999
Q ss_pred cCccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000867 752 SGYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826 (1247)
Q Consensus 752 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 826 (1247)
+|.++.. ...++.++|++|++.+++ .||+||+.+....+. ....+..+++++++++.+|+.+....... ..
T Consensus 71 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~ 146 (253)
T PRK14242 71 DGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLH-ES 146 (253)
T ss_pred CCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CC
Confidence 9987642 123567999999998887 599999988654321 11223334567888999998542111111 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 827 ~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|++. ++.+..|+
T Consensus 147 ~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~ 217 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDV 217 (253)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCE
Confidence 35799999999999999999999999999999999999999999999985 4799999999986 34455666
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=304.18 Aligned_cols=204 Identities=20% Similarity=0.268 Sum_probs=163.5
Q ss_pred CCCcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-CeEEEEE
Q 000867 673 FEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNI 749 (1247)
Q Consensus 673 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i 749 (1247)
.....++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|
T Consensus 9 ~~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i 75 (260)
T PRK10744 9 TAPSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI 75 (260)
T ss_pred CCCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE
Confidence 3456789999998763 1359999999999999999999999999999999999753 1 1357999
Q ss_pred EEcCccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccc
Q 000867 750 TISGYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQS 820 (1247)
Q Consensus 750 ~i~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~ 820 (1247)
.++|.++.. ...++.++|++|+..+++ .|++||+.+...... ..+.+..+++++++++.+++.+ ..+.
T Consensus 76 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 152 (260)
T PRK10744 76 LLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQ 152 (260)
T ss_pred EECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhc
Confidence 999987632 134567999999988887 899999987653221 1233444566889999999843 2333
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 821 ~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
. ...||||||||++|||||+.+|++|+|||||+|||..++..+.+.|+++. ++.|||+++|++. .+.+..|+
T Consensus 153 ~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~ 224 (260)
T PRK10744 153 S-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDY 224 (260)
T ss_pred C-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCE
Confidence 3 35799999999999999999999999999999999999999999999985 4789999999985 34455666
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=300.07 Aligned_cols=185 Identities=26% Similarity=0.385 Sum_probs=151.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+||||||||||+++|+|.++|. +|+|.++|+++.... .++.++|++|++.+++.+||+||+.++....+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-- 102 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGV-- 102 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCC--
Confidence 47999999999999999999999887 999999998775322 245799999998888899999999886432110
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
. . .+.+..++++++.+||.+..+. .+..||||||||++|||||
T Consensus 103 --~------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrl~la~al 145 (213)
T cd03259 103 --P------K------------------------AEIRARVRELLELVGLEGLLNR-----YPHELSGGQQQRVALARAL 145 (213)
T ss_pred --C------H------------------------HHHHHHHHHHHHHcCChhhhhc-----ChhhCCHHHHHHHHHHHHH
Confidence 0 0 0011235667888999765444 3457999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEec
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G 228 (1247)
+.+|++++|||||+|||+.++..+.+.++++++. .+++|++++|+.+++.++||++++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRE-LGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987653 3566777899999999999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=306.82 Aligned_cols=198 Identities=24% Similarity=0.347 Sum_probs=161.2
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcc
Confidence 56788887763 23599999999999999999999999999999999998653 4899999998763
Q ss_pred c-----ccccceEEEeccCCCC-CCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 758 Q-----ETFTRISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 758 ~-----~~~~~~~~~v~q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
. ...++.++|++|++.. ....|+.||+.+....+ ....+..++.++++++.+|+.+..++.+ +.||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 1234578999999753 34468999998764332 1233344456788999999988777654 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+..|+
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~ 205 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDA 205 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998767899999999986 34455666
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=304.89 Aligned_cols=208 Identities=25% Similarity=0.305 Sum_probs=162.9
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++.....+ ..+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 67888888764110000 00135699999999999999999999999999999999998653 4799999998764
Q ss_pred cc------cccceEEEeccCC--CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000867 758 QE------TFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGES 828 (1247)
Q Consensus 758 ~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 828 (1247)
.. ..++.++|++|++ .+.+.+||+|++.+...... ....+..+++++++++.+|+. +..+..+ +
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKLP-----R 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCCh-----h
Confidence 31 1345689999996 46678999999976543111 122333455688999999995 5555554 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+..|+
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~ 220 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQR 220 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcE
Confidence 69999999999999999999999999999999999999999999998765 899999999986 34455666
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=295.69 Aligned_cols=195 Identities=25% Similarity=0.319 Sum_probs=159.5
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ .+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~---------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 64 (213)
T TIGR01277 2 ALDKVRYEYE---------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTG 64 (213)
T ss_pred eEEeeeEEeC---------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEccc
Confidence 4677776652 146799999999999999999999999999999998763 47999999987643
Q ss_pred -ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000867 759 -ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1247)
Q Consensus 759 -~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r 837 (1247)
...++.++|++|++.+++.+|+.||+.+...... ... ...+++++++++.+|+.+..++.+ +.||||||||
T Consensus 65 ~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (213)
T TIGR01277 65 LAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--KLN-AEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQR 136 (213)
T ss_pred CChhccceEEEeccCccCCCCcHHHHHHhHhhccC--Ccc-HHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHH
Confidence 2345679999999999999999999976542211 111 223456788999999987777665 4699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 838 ~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++|||+|+.+|++++|||||+|||..++..+.+.|+++.++ |+|||+++|++. ++-+..|+
T Consensus 137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~ 198 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQ 198 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCe
Confidence 99999999999999999999999999999999999998754 899999999986 34455666
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=300.26 Aligned_cols=183 Identities=25% Similarity=0.361 Sum_probs=152.6
Q ss_pred eeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCcCHHHHHH
Q 000867 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLL 785 (1247)
Q Consensus 706 L~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~ 785 (1247)
|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 5799999999999999999999999999999998653 4899999998765322 12489999999999999999998
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000867 786 YSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 865 (1247)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~ 865 (1247)
+......+ ....+..+++++++++.+|+.+..++.+ +.||||||||++|||+|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 75321111 2233444556788999999987777665 46999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 866 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 866 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 184 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDR 184 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999998764 899999999986 45566776
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=298.02 Aligned_cols=197 Identities=27% Similarity=0.398 Sum_probs=164.6
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
.++|+++.+. .+.+++|+|++++|||+++|+||||||||||+++|+|..++ ..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 5778877653 23599999999999999999999999999999999998763 47999999987653
Q ss_pred c-cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000867 759 E-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1247)
Q Consensus 759 ~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r 837 (1247)
. ..++.++|++|++.+++.+|++||+.+....+ ..+....++.++++++.+|+.+..++.+ ..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 2 12457899999999988899999998765433 1223344556788999999988777665 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 838 ~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~ 200 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDR 200 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999998764 899999999985 35566676
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=303.16 Aligned_cols=182 Identities=20% Similarity=0.220 Sum_probs=135.1
Q ss_pred CCcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcC
Q 000867 674 EPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 753 (1247)
Q Consensus 674 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g 753 (1247)
.+..+.+.++++.++. +.-+++++++..++.-...+++|+||+||||+++++.|... +..|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~ 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP 425 (582)
T ss_pred CCCeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc
Confidence 3456888888876541 11168899999999999999999999999999999998544 2356665543
Q ss_pred ccCCcccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000867 754 YPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 754 ~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 833 (1247)
+..++|-.|...-+-.+.|.+- .+....+ +... ++.+++-+..+||..-. ......+||||
T Consensus 426 --------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~--pG~~----~ee~r~hl~~~Gl~g~l----a~~si~~LSGG 486 (582)
T KOG0062|consen 426 --------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF--PGKT----EEEIRRHLGSFGLSGEL----ALQSIASLSGG 486 (582)
T ss_pred --------cceecchhHhhhhHHHHHhHHH-HHHHHhC--CCCC----HHHHHHHHHhcCCCchh----hhccccccCCc
Confidence 4567899887654444444432 2333333 1222 23356778899996421 11124579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCC
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1247)
||-||++|.....+|.+|+|||||+.||..+-..+.+.|+.. +.-||+++|+.+
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~ 540 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE 540 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH
Confidence 999999999999999999999999999999999999999875 347999999864
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=305.63 Aligned_cols=204 Identities=28% Similarity=0.348 Sum_probs=164.2
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eEEEEEEEcCcc
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 755 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~i~g~~ 755 (1247)
-++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 478899987763 245999999999999999999999999999999999986532 236999999987
Q ss_pred CCc--------ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccc
Q 000867 756 KKQ--------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-----EVDSETQKMFIEEIMELVELNPLRQSLV 822 (1247)
Q Consensus 756 ~~~--------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 822 (1247)
+.. ...++.++|++|++.+++.+|+.||+.+......+. ....+..+++++++++.+|+.+..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 123456899999999999999999998753211000 1112233456889999999987777665
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccCChHHHHhhhc
Q 000867 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 823 g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
..||||||||++|||||+.+|++|+|||||+|||..++..+.+.|+++.+ +|+|||+++|++.. +.+..|+
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~-~~~~~d~ 222 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDY-ALRYCER 222 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCE
Confidence 46999999999999999999999999999999999999999999999875 48999999999863 4444555
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=306.29 Aligned_cols=203 Identities=22% Similarity=0.281 Sum_probs=166.0
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEE
Confidence 4688999998763 23599999999999999999999999999999999998653 47999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
+.. ...++.++|++|++.+++.+|++|++.+...-..+ .....+..+++++++++.+|+.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 145 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLS 145 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCC
Confidence 643 22345689999999988889999999765211100 00011233456788999999987766664 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+..|+
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~ 213 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASH 213 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998764 899999999986 46667776
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=275.42 Aligned_cols=191 Identities=27% Similarity=0.422 Sum_probs=160.2
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
|+.+|++|+.. ++.+|+++|++++|||++||+||||||||||||.|+|...+ .+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChh
Confidence 56788988864 45799999999999999999999999999999999998763 3799999999876
Q ss_pred cc---cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 758 QE---TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEV--DSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 758 ~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
.. ...+..+.+||+..+-.-.||+|-+.++. .|... ..++..+.+++++...++.+++.... ..|||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr---~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSG 138 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGR---IPHRSGREPEEDERIAAQALAATDLSGLAGRDY-----RTLSG 138 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhcc---cccccCCCchhhHHHHHHHHHHcChhhhhccch-----hhcCc
Confidence 43 34455689999988876689999999874 33321 22244455788999999998887665 46999
Q ss_pred HHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCCh
Q 000867 833 EQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~------~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 891 (1247)
||||||.+||.|+. ++++||||||||+||..-+..++++.|+++++|..|+++.||.+.
T Consensus 139 GEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL 203 (259)
T COG4559 139 GEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL 203 (259)
T ss_pred hHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH
Confidence 99999999999975 456999999999999999999999999999999999999999874
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=300.92 Aligned_cols=204 Identities=23% Similarity=0.316 Sum_probs=160.3
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC---CCCeEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~---~~~~~~G~i~i~g 753 (1247)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.. +..+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 477889887763 235999999999999999999999999999999999952 2112479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 828 (1247)
.++.. ...++.++|++|++.+++ .|+.||+.+....+. ....+..++.++++++.+|+.+..+.... ...+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLK-ESAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcc
Confidence 87643 133557899999988887 699999987654331 11223344567889999998643211111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+..|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~ 214 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDK 214 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCE
Confidence 799999999999999999999999999999999999999999999985 5799999999986 45566776
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=313.97 Aligned_cols=191 Identities=26% Similarity=0.364 Sum_probs=158.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 108 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS 108 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999887 99999999876432 12467999999998888999999998754321100
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
. .+.+..++.+++.++|++..++.+ .+|||||||||+||||
T Consensus 109 ----------~------------------------~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 109 ----------T------------------------REIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLTLARA 149 (303)
T ss_pred ----------H------------------------HHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHHHHHH
Confidence 0 001123456788899987666554 4799999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
|+.+|++++|||||+|||+.++..+.+.++++.+ .+++|++++|+.+++.++||++++|++|++++.|+++++.+
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999754 35667778999999999999999999999999999888753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=300.26 Aligned_cols=194 Identities=26% Similarity=0.296 Sum_probs=156.9
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 2 EVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDITK 66 (230)
T ss_pred EEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCC
Confidence 5678877653 23599999999999999999999999999999999998653 47999999987643
Q ss_pred c----cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCHH
Q 000867 759 E----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE-LNPLRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 759 ~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~g~~~~~~lSgG 833 (1247)
. ..++.++|++|++.+++.+|++|++.+....+. .. ..+.++++++.++ +.+..++.+ +.||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRG-----GDLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCCh-----hhCCHH
Confidence 1 124568999999999999999999987654321 11 1223566777776 455555554 469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++-+..|+
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 201 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADR 201 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998764 899999999985 34445665
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=315.06 Aligned_cols=191 Identities=26% Similarity=0.404 Sum_probs=152.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 2 ~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+||+|+|||||||+||+|.+..+ . +|+|.+||+++.+.. .|+.|||||||..+|.+ ||.+||.+|..-.+
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~sas-- 453 (591)
T KOG0057|consen 381 VAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNPSAS-- 453 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCCCcC--
Confidence 69999999999999999999988 3 899999999986543 46789999998777654 99999999642111
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
++.+.+.|++ .+ ..+. ...|+++.+|.||+++. .|||||||||+||||
T Consensus 454 --~eeV~e~~k~---a~------------------------~hd~--i~~l~~GY~T~VGerG~-~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 454 --DEEVVEACKR---AG------------------------LHDV--ISRLPDGYQTLVGERGL-MLSGGEKQRVSLARA 501 (591)
T ss_pred --HHHHHHHHHH---cC------------------------cHHH--HHhccccchhhHhhccc-ccccchHHHHHHHHH
Confidence 1111122111 11 1111 23488999999997655 699999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
++.+|+|+++|||||+||++++.++++.+.+. ..++|++.+.|+. .....||+|++|++|++.+.|++++++.
T Consensus 502 ~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~---~~~rTvI~IvH~l-~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 502 FLKDAPILLLDEATSALDSETEREILDMIMDV---MSGRTVIMIVHRL-DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HhcCCCeEEecCcccccchhhHHHHHHHHHHh---cCCCeEEEEEecc-hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999999999999883 2345555577766 5677899999999999999999999875
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=319.97 Aligned_cols=191 Identities=20% Similarity=0.301 Sum_probs=159.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.++..
T Consensus 56 i~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~ 132 (400)
T PRK10070 56 IFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132 (400)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999987 9999999998754321 2479999999999999999999998764
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
..+.. . .+.+..++++++.+||.+..+ +.+..|||||||||
T Consensus 133 ~~~~~----------~------------------------~~~~~~~~e~L~~~gL~~~~~-----~~~~~LSgGq~QRv 173 (400)
T PRK10070 133 LAGIN----------A------------------------EERREKALDALRQVGLENYAH-----SYPDELSGGMRQRV 173 (400)
T ss_pred hcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhh-----cCcccCCHHHHHHH
Confidence 32210 0 011123567899999976544 44568999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+|||||+.+|+++||||||+|||+.++.++.+.|+++.+. .+++|++++|+.+++..++|+|++|++|+++..|+++++
T Consensus 174 ~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~-~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 174 GLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK-HQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252 (400)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999987553 355677789999999999999999999999999988776
Q ss_pred H
Q 000867 234 L 234 (1247)
Q Consensus 234 ~ 234 (1247)
.
T Consensus 253 ~ 253 (400)
T PRK10070 253 L 253 (400)
T ss_pred H
Confidence 4
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=304.00 Aligned_cols=201 Identities=28% Similarity=0.393 Sum_probs=162.9
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcc
Confidence 56788887663 24599999999999999999999999999999999998653 4799999998764
Q ss_pred c---ccccceEEEeccCCCCCCCcCHHHHHHHHhh-ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000867 758 Q---ETFTRISGYCEQNDIHSPFVTVYESLLYSAW-LRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 758 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 833 (1247)
. ...++.++|++|++.+++.+||+||+.+... .+...........+++.++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 3 2234568999999877788999999987521 100000111223456788999999987777665 469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||++||+||+.+|++++|||||+|||+.+...+.+.|+++.++|.|||+++|+++ .+.+..|+
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 206 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDH 206 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998777899999999986 45566676
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-32 Score=302.18 Aligned_cols=209 Identities=22% Similarity=0.280 Sum_probs=165.8
Q ss_pred CCCCcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeEEEE
Q 000867 672 PFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGN 748 (1247)
Q Consensus 672 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~---~~~~G~ 748 (1247)
|..+..++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+
T Consensus 15 ~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 81 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81 (267)
T ss_pred CCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE
Confidence 34455799999998763 24599999999999999999999999999999999997642 135899
Q ss_pred EEEcCccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 000867 749 ITISGYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823 (1247)
Q Consensus 749 i~i~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g 823 (1247)
|.++|.+... ...++.++|++|++.+++ .||+||+.+..... . ....+..++++.++++.++|.+..+....
T Consensus 82 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 9999987642 123557899999988887 69999998764321 1 11233445667889999998643222221
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 824 ~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
...+.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++. ++.|||+++|++. ++.+..|+
T Consensus 159 -~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~ 231 (267)
T PRK14237 159 -KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDY 231 (267)
T ss_pred -CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCE
Confidence 1245799999999999999999999999999999999999999999999985 4799999999986 46666776
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=304.27 Aligned_cols=200 Identities=25% Similarity=0.288 Sum_probs=164.2
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 5889999887631 123599999999999999999999999999999999998653 479999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 757 KQ---ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
.. ...++.++|++|++. +++..|+.+|+.+..... ....+...+.++++++.+++.+..+..+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 43 234567899999974 677789999998764322 2233444556788999999987776654 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++.. +.. .|+
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~~-~d~ 211 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AME-ADH 211 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hhc-CCE
Confidence 9999999999999999999999999999999999999999998764 8999999999864 333 565
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=302.62 Aligned_cols=202 Identities=24% Similarity=0.274 Sum_probs=161.7
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeEEEEEEEc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 752 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~i~ 752 (1247)
..++++|+++.+. ++.+|+|+|++|+|||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 18 ~~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~ 84 (267)
T PRK14235 18 IKMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLD 84 (267)
T ss_pred ceEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEEC
Confidence 3689999998763 23599999999999999999999999999999999997542 1357999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc----cccccc
Q 000867 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL----RQSLVG 823 (1247)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~~g 823 (1247)
|.++.. ..+++.++|++|++.+++. |+.||+.+....+.. ....+..+++++++++.+|+.+. .+..
T Consensus 85 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 160 (267)
T PRK14235 85 GEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP-- 160 (267)
T ss_pred CEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC--
Confidence 987642 2345678999999888875 999999886543311 11223334567889999999642 2222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 824 ~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.+.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+-+..|+
T Consensus 161 ---~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~ 231 (267)
T PRK14235 161 ---GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQR 231 (267)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCE
Confidence 357999999999999999999999999999999999999999999999865 689999999985 34455565
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=310.58 Aligned_cols=191 Identities=25% Similarity=0.357 Sum_probs=156.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-----cccceEEEeccccc-cCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDV-HIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-----~~~~~i~yv~Q~~~-~~~~lTv~e~l~f~~~~ 74 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++. .+...||+||+.|+...
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 111 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN 111 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHH
Confidence 47999999999999999999999987 99999999887542 22467999999853 34467999999986432
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCc--ccccccccCCccccccccccch
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE--VCDDTLVGDEMVRGISGGQKKR 152 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~t~vg~~~~~~LSGGqrqR 152 (1247)
.+.. .++..+.++++++.+||+ +.. ++.++.||||||||
T Consensus 112 ~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~~LSgGq~qr 152 (287)
T PRK13637 112 LGLS----------------------------------EEEIENRVKRAMNIVGLDYEDYK-----DKSPFELSGGQKRR 152 (287)
T ss_pred CCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhc-----cCCcccCCHHHHHH
Confidence 1100 011223456789999996 333 45566899999999
Q ss_pred hHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcch
Q 000867 153 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPREL 232 (1247)
Q Consensus 153 vsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~ 232 (1247)
++|||||+.+|++++|||||+|||+.++.++.+.++++.+. .+++|++++|+.+++..+||+|++|++|++++.|++++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998653 35677778999999999999999999999999999888
Q ss_pred HH
Q 000867 233 VL 234 (1247)
Q Consensus 233 ~~ 234 (1247)
+.
T Consensus 232 ~~ 233 (287)
T PRK13637 232 VF 233 (287)
T ss_pred HH
Confidence 64
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=314.61 Aligned_cols=188 Identities=21% Similarity=0.304 Sum_probs=159.9
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCc----cCCc---cc---c-cceEEEec
Q 000867 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY----PKKQ---ET---F-TRISGYCE 769 (1247)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~----~~~~---~~---~-~~~~~~v~ 769 (1247)
+...+|+|+||+|++||+++|+|+||||||||+++|+|..++ .+|+|.++|. ++.. .. . ++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 446799999999999999999999999999999999998763 4799999996 2221 11 1 24689999
Q ss_pred cCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc
Q 000867 770 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPS 849 (1247)
Q Consensus 770 q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~ 849 (1247)
|+..++|.+||+||+.|....+ ..+.++.+++++++++.+||.+..+...+ .||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999875433 23345556678899999999888777653 699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 850 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 850 il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.++.|+
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~Dr 234 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNR 234 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999998764 899999999986 45667777
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=304.02 Aligned_cols=199 Identities=28% Similarity=0.349 Sum_probs=162.7
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.+. +++.+|+|+|++|++||+++|+||||||||||+++|+|..+. .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECc
Confidence 56888887763 123599999999999999999999999999999999998653 4799999998763
Q ss_pred c-----ccccceEEEeccCCC-CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 758 Q-----ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 758 ~-----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
. ...++.++|++|++. .+...||.|++.+..... ....++..+++.++++.+||.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 123567999999963 333479999998754221 2233444566889999999988877765 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+..|+
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~ 206 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADK 206 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998777999999999976 44556676
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=307.24 Aligned_cols=191 Identities=24% Similarity=0.336 Sum_probs=157.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc-------ccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-------PQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~-------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.++..
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 128 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 128 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence 47999999999999999999999987 999999998765321 12479999999988989999999998653
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
..+. . . .+..+.++++++.+||.+..++. +..|||||||||
T Consensus 129 ~~~~----~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv 169 (269)
T cd03294 129 VQGV----P------R------------------------AEREERAAEALELVGLEGWEHKY-----PDELSGGMQQRV 169 (269)
T ss_pred hcCC----C------H------------------------HHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHHHH
Confidence 2210 0 0 00112356688999997655544 457999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+|||||+.+|++++|||||+|||+.++..+.+.++++.+. .+.+|++++|+.+++.+++|++++|++|++++.|+++++
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE-LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999987653 355677789999999999999999999999999988765
Q ss_pred H
Q 000867 234 L 234 (1247)
Q Consensus 234 ~ 234 (1247)
.
T Consensus 249 ~ 249 (269)
T cd03294 249 L 249 (269)
T ss_pred H
Confidence 4
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=276.32 Aligned_cols=192 Identities=28% Similarity=0.400 Sum_probs=157.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~---~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
|++|+||||||||||||.|+|++.|+ +|++.+||.+.+.... .+.-+..||+..+-+..||+|.+.++..-.+.
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~ 105 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS 105 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc
Confidence 57999999999999999999999997 9999999999876543 25679999998887778999999998542211
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
++. ..+..++++..|...++...+ .+....|||||||||.+||
T Consensus 106 g~~--------------------------------~~e~~~i~~~ala~~d~~~la-----~R~y~~LSGGEqQRVqlAR 148 (259)
T COG4559 106 GRE--------------------------------PEEDERIAAQALAATDLSGLA-----GRDYRTLSGGEQQRVQLAR 148 (259)
T ss_pred CCC--------------------------------chhhHHHHHHHHHHcChhhhh-----ccchhhcCchHHHHHHHHH
Confidence 110 011223456667777766544 3556789999999999999
Q ss_pred HHhc------CCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcc
Q 000867 158 MMVG------PALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1247)
Q Consensus 158 al~~------~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~ 231 (1247)
.|++ ++++||||||||+||....++++++.+++++. +..|+.+.|+.+-+..+||||++|++||++..|+++
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~--g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc--CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 9986 45699999999999999999999999999875 355666899999999999999999999999999998
Q ss_pred hHH
Q 000867 232 LVL 234 (1247)
Q Consensus 232 ~~~ 234 (1247)
+++
T Consensus 227 ~vl 229 (259)
T COG4559 227 DVL 229 (259)
T ss_pred Hhc
Confidence 876
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=297.41 Aligned_cols=197 Identities=27% Similarity=0.397 Sum_probs=163.6
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.++..
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 5677777653 23599999999999999999999999999999999998653 47999999988653
Q ss_pred c-cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000867 759 E-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1247)
Q Consensus 759 ~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r 837 (1247)
. ..++.++|++|++.+++.+|+.||+.+....+ ........+.++++++.+++.+..++.. +.||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 23457899999999999999999998765432 1223334456788999999987777665 4699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 838 ~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++|||+|+.+|++++|||||+|||..+...+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~ 200 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADR 200 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCE
Confidence 99999999999999999999999999999999999998765 899999999985 44555666
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=302.70 Aligned_cols=195 Identities=25% Similarity=0.353 Sum_probs=156.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++........
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 106 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSE 106 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccc
Confidence 47999999999999999999999886 999999998765322 24579999999888888999999998643211000
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
+.+ ..+..+.++++++.+||.+..+. .+.+|||||||||+|||||
T Consensus 107 ~~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 107 RPP------------------------------EAEIRAKVHELLKLVQLDWLADR-----YPAQLSGGQRQRVALARAL 151 (239)
T ss_pred cCC------------------------------HHHHHHHHHHHHHHcCChhhhhc-----ChhhCCHHHHHHHHHHHHH
Confidence 000 00111235667888998754443 4557999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
+.+|++++|||||+|||+.++..+.+.++++++. .+++|++++|+.+++...+|++++|++|++++.|+++++.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE-LHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 9999999999999999999999999999987653 2456777899999999999999999999999999877653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=307.33 Aligned_cols=205 Identities=19% Similarity=0.291 Sum_probs=162.3
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|+++.++... .....+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 74 (289)
T PRK13645 5 KDIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYA 74 (289)
T ss_pred ceEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 3588999998774110 0013599999999999999999999999999999999998653 47999999987
Q ss_pred CCc--------ccccceEEEeccCCCC-CCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCC
Q 000867 756 KKQ--------ETFTRISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLP 825 (1247)
Q Consensus 756 ~~~--------~~~~~~~~~v~q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~ 825 (1247)
+.. ...++.++|++|++.. ....|++||+.|..... ....+...++++++++.++|. +..++.+
T Consensus 75 i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~--- 148 (289)
T PRK13645 75 IPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP--- 148 (289)
T ss_pred ccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh---
Confidence 531 2345678999999742 22369999998764321 123344445678899999994 5556554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+..|+
T Consensus 149 --~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~ 220 (289)
T PRK13645 149 --FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADE 220 (289)
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 469999999999999999999999999999999999999999999998754 899999999986 45566776
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=332.05 Aligned_cols=204 Identities=22% Similarity=0.292 Sum_probs=168.1
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++++.+|+|.++|.+.
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 478899988763 2459999999999999999999999999999999999865423589999999876
Q ss_pred Cccc----ccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 757 KQET----FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 757 ~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
.... .++.+||++|++.+++.+||+|++.+....+.....+.+..+++++++++.+|+.+..+..+ +.|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 4321 24568999999989999999999988653321111123334456889999999987777765 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.+..|+
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~ 212 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDT 212 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999999998777999999999985 34455666
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=302.48 Aligned_cols=200 Identities=24% Similarity=0.320 Sum_probs=157.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP----QRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~----~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+|||||||||||++|+|+++|. +|+|.++|.++..... ++.++|++|++.+++.+||+||+.++.....
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~ 104 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQART 104 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcc
Confidence 47999999999999999999999886 9999999988754321 2469999999999999999999998653221
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
.. . .... .. .....+....++++++.+||++..+ +.++.|||||||||+||
T Consensus 105 ~~-~------~~~~-----~~------------~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la 155 (236)
T cd03219 105 GS-G------LLLA-----RA------------RREEREARERAEELLERVGLADLAD-----RPAGELSYGQQRRLEIA 155 (236)
T ss_pred cc-c------cccc-----cc------------cccHHHHHHHHHHHHHHcCccchhh-----CChhhCCHHHHHHHHHH
Confidence 00 0 0000 00 0000111234567889999976544 44567999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||+.+|++++|||||+|||+.++..+.+.++++.+ . +++|++++|+.+++.++||++++|++|++++.|+++++.
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-R-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 999999999999999999999999999999998764 3 556777899999999999999999999999999877653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=303.35 Aligned_cols=203 Identities=27% Similarity=0.360 Sum_probs=161.6
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC------eEEEEEEE
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YITGNITI 751 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~------~~~G~i~i 751 (1247)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56788887653 245999999999999999999999999999999999976532 12799999
Q ss_pred cCccCCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000867 752 SGYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827 (1247)
Q Consensus 752 ~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 827 (1247)
+|.+... ..+++.++|++|++..++.+|++||+.+....... .....+..++.++++++.+|+.+..++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV----- 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 9987642 23345689999998766679999999875321110 01111233456788999999987766554
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhh
Q 000867 828 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESF 897 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~---------~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~f 897 (1247)
..||||||||++|||+|+ .+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|++. ++.+..
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 469999999999999999 599999999999999999999999999998765 899999999986 455566
Q ss_pred hc
Q 000867 898 DE 899 (1247)
Q Consensus 898 d~ 899 (1247)
|+
T Consensus 223 d~ 224 (272)
T PRK13547 223 DR 224 (272)
T ss_pred CE
Confidence 76
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=307.90 Aligned_cols=209 Identities=17% Similarity=0.220 Sum_probs=164.5
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-C-eEEEEEEEcCc
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YITGNITISGY 754 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~-~-~~~G~i~i~g~ 754 (1247)
.++++|+++.+... .+...+|+||||+|++||++||+|+||||||||+++|+|..+. + ..+|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 3 LLNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred eEEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 37889998877421 1124699999999999999999999999999999999997642 2 35899999998
Q ss_pred cCCcc---c----ccceEEEeccCC--CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000867 755 PKKQE---T----FTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825 (1247)
Q Consensus 755 ~~~~~---~----~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~ 825 (1247)
++... . +++.++|++|++ .+.|.+|+.+++........ ....++.++++.++++.+||.+..+.. +.
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l--~~ 149 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRL--DV 149 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHH--hC
Confidence 86431 1 123689999998 47888999988765543221 223445567789999999997532111 11
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccCChHHHHhhhc
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.+..|||||||||+|||||+.+|++|++||||+|||..++..+++.|+++.+ .|.|+|++||+.+. +.+..|+
T Consensus 150 ~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~-~~~~adr 223 (326)
T PRK11022 150 YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLAL-VAEAAHK 223 (326)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCE
Confidence 2357999999999999999999999999999999999999999999999875 48999999999863 4556677
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=299.29 Aligned_cols=180 Identities=24% Similarity=0.340 Sum_probs=147.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 107 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI 107 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHh
Confidence 47999999999999999999999887 999999998764321 246799999999889999999999986542
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
.+.. .++....++++++.+||++..+. .+.+|||||||||+
T Consensus 108 ~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~ 148 (216)
T TIGR00960 108 IGVP----------------------------------PRDANERVSAALEKVGLEGKAHA-----LPMQLSGGEQQRVA 148 (216)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHH
Confidence 2100 00011235667889999765544 44579999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcE
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQI 224 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v 224 (1247)
|||||+.+|++++|||||+|||+.++..+.+.++++.+ . +.+|++++|+.+.+..+||++++|++|++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-R-GTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999998754 3 55677789999999999999999999974
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=317.54 Aligned_cols=185 Identities=24% Similarity=0.350 Sum_probs=157.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-------cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++... ..++.++|++|++.+++.+||+||+.|+.+
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 47999999999999999999999987 99999999876431 124679999999999999999999988531
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
. . .+..++++++.+||.+..+ +.+.+|||||||||
T Consensus 103 ~-----------~-----------------------------~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qRv 137 (352)
T PRK11144 103 K-----------S-----------------------------MVAQFDKIVALLGIEPLLD-----RYPGSLSGGEKQRV 137 (352)
T ss_pred h-----------h-----------------------------hHHHHHHHHHHcCCchhhh-----CCcccCCHHHHHHH
Confidence 0 0 0112566788999976544 44567999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .++++++++|+.+++..++|++++|++|+++..|+++++
T Consensus 138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE-INIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999999999987653 356677789999999999999999999999999999887
Q ss_pred H
Q 000867 234 L 234 (1247)
Q Consensus 234 ~ 234 (1247)
.
T Consensus 217 ~ 217 (352)
T PRK11144 217 W 217 (352)
T ss_pred H
Confidence 5
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-32 Score=302.37 Aligned_cols=199 Identities=23% Similarity=0.288 Sum_probs=160.0
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeEEEEEEEc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 752 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~i~ 752 (1247)
..++++|+++.++ .+.+|+|+||+|++||+++|+||||||||||+++|+|..+. .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 4689999988763 23599999999999999999999999999999999997542 1357999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000867 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVG 823 (1247)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g 823 (1247)
|.++.. ...++.++|++|++.+++ .||+||+.+.+..+. ... ..++.++++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 987531 234556899999998888 499999988754331 111 23345677888888743 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 824 ~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~ 222 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDM 222 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCE
Confidence 357999999999999999999999999999999999999999999999854 789999999985 45566776
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=294.55 Aligned_cols=159 Identities=25% Similarity=0.303 Sum_probs=125.0
Q ss_pred eceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCcCHHHHHHH
Q 000867 707 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLY 786 (1247)
Q Consensus 707 ~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~ 786 (1247)
.-=.++|..||+++++||||-||||+.++|+|..+++ +|+ . ..-.++|=||--.-....||++-|.-
T Consensus 358 ~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~-------~~~~vSyKPQyI~~~~~gtV~~~l~~ 424 (591)
T COG1245 358 EVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----E-------EDLKVSYKPQYISPDYDGTVEDLLRS 424 (591)
T ss_pred EecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----C-------ccceEeecceeecCCCCCcHHHHHHH
Confidence 3335678889999999999999999999999976532 443 1 01235788887555567899998754
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 000867 787 SAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866 (1247)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~ 866 (1247)
...-+... . ....++.+-|+|.+..+..+. +|||||.|||+||.+|.+++++.+||||++.||.+.+.
T Consensus 425 ~~~~~~~~---s----~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~ 492 (591)
T COG1245 425 AIRSAFGS---S----YFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRI 492 (591)
T ss_pred hhhhhccc---c----hhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHH
Confidence 33221111 1 123468888999988888874 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCEEEEEeccCC
Q 000867 867 IVMRTVRNTVD-TGRTVVCTIHQPS 890 (1247)
Q Consensus 867 ~i~~~l~~~~~-~g~tvi~~~H~~~ 890 (1247)
.+.+.||+... .++|.+++-||.-
T Consensus 493 ~vakvIRR~~e~~~kta~vVdHDi~ 517 (591)
T COG1245 493 IVAKVIRRFIENNEKTALVVDHDIY 517 (591)
T ss_pred HHHHHHHHHHhhcCceEEEEeccee
Confidence 99999999874 4789999999874
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=301.03 Aligned_cols=191 Identities=25% Similarity=0.337 Sum_probs=156.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++||+.++...
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 109 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEI 109 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999987 999999998875421 145799999999989889999999886432
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
.+. . . .+....++++++.+||++..+. .+..|||||||||+
T Consensus 110 ~~~----~---~---------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~ 150 (233)
T cd03258 110 AGV----P---K---------------------------AEIEERVLELLELVGLEDKADA-----YPAQLSGGQKQRVG 150 (233)
T ss_pred cCC----C---H---------------------------HHHHHHHHHHHHHCCChhhhhc-----ChhhCCHHHHHHHH
Confidence 210 0 0 0011235677889999765443 45579999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||||+.+|++++|||||+|||+.++..+.+.++++.+. ++++|++++|+.+++.+++|++++|++|++++.|+.+++.
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRE-LGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999987553 3566777899999999999999999999999999876653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-32 Score=298.91 Aligned_cols=204 Identities=21% Similarity=0.276 Sum_probs=158.8
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-CeEEEEEEEcCccC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPK 756 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~i~g~~~ 756 (1247)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56788887763 23599999999999999999999999999999999997532 23579999999886
Q ss_pred Cc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000867 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 833 (1247)
.. ...++.++|++|++.+++ .|++||+.+....+.... .....+++++++++.+++.+...... +...+.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHH
Confidence 43 234567899999998887 699999988654331101 12233456788999999953211111 1123579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+..|+
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~ 210 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADY 210 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcE
Confidence 99999999999999999999999999999999999999999864 899999999985 23444555
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=298.65 Aligned_cols=206 Identities=21% Similarity=0.297 Sum_probs=162.7
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eEEEEEEEc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITIS 752 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~i~ 752 (1247)
..++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++
T Consensus 3 ~~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~ 69 (252)
T PRK14256 3 NKVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLD 69 (252)
T ss_pred cEEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEEC
Confidence 3578999988763 2359999999999999999999999999999999999753 21 247999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000867 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827 (1247)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 827 (1247)
|.++.. ..+++.++|++|+..+++.+|++||+.+...... ....+..+++++++++.+++.+....... ...
T Consensus 70 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 146 (252)
T PRK14256 70 DTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNA 146 (252)
T ss_pred CEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987632 2345679999999999999999999987543221 11223334567889999998542111111 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 147 ~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~ 216 (252)
T PRK14256 147 MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDY 216 (252)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCE
Confidence 57999999999999999999999999999999999999999999999865 689999999985 45566676
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-32 Score=305.15 Aligned_cols=204 Identities=21% Similarity=0.270 Sum_probs=165.0
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
-++++|++++++... ....+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEec
Confidence 478999988874110 00124699999999999999999999999999999999998663 479999999886
Q ss_pred Cc----ccccceEEEeccCCCC-CCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 757 KQ----ETFTRISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 757 ~~----~~~~~~~~~v~q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
.. ...++.+||++|++.. +...||.|++.|..... ..+..+.+++++++++.+||.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 2345678999999742 23468999998865322 2233444567889999999988877765 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|+++. +- ..|+
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~ 213 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADR 213 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCE
Confidence 99999999999999999999999999999999999999999998754 8999999999975 32 3666
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6e-32 Score=298.91 Aligned_cols=194 Identities=28% Similarity=0.378 Sum_probs=158.9
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEh
Confidence 477889987763 23599999999999999999999999999999999998653 479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 000867 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLST 832 (1247)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSg 832 (1247)
.. ...++.++|++|++.+++ .|++||+.+....+ . . .++++.++++.+++. +..++.. ..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~-~---~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G-E---KNVDVEYYLSIVGLNKEYATRDV-----KNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C-c---HHHHHHHHHHHcCCCHHHhhCCc-----ccCCH
Confidence 42 234567899999988887 69999987653221 1 1 123577889999996 4555443 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+-+..|+
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~ 201 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDY 201 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998764 899999999986 34455666
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=295.58 Aligned_cols=184 Identities=28% Similarity=0.400 Sum_probs=155.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc-cccceEEEeccCCCCCCCcCHHHH
Q 000867 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFTRISGYCEQNDIHSPFVTVYES 783 (1247)
Q Consensus 705 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~ 783 (1247)
+|+|+|++++|||+++|+||||||||||+++|+|..++ ..|+|.++|.++... ..++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 89999999999999999999999999999999998653 479999999876532 234578999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 000867 784 LLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863 (1247)
Q Consensus 784 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~ 863 (1247)
+.+..... .......++.+.++++.+||.+..++.+ +.||||||||++|||||+.+|++++|||||+|||..
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1223334456788999999988777765 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 864 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 864 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~ 199 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADK 199 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999998654 899999999985 35555666
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-32 Score=300.32 Aligned_cols=189 Identities=21% Similarity=0.354 Sum_probs=155.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+|||||||||||++|+|..+|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.+.....+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG 104 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC
Confidence 47999999999999999999999887 999999998764322 12469999999989999999999988643211
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
.. . .+....++++++.+|+.+..++ .+..||||||||++||
T Consensus 105 ~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la 145 (232)
T cd03218 105 LS----------K------------------------KEREEKLEELLEEFHITHLRKS-----KASSLSGGERRRVEIA 145 (232)
T ss_pred CC----------H------------------------HHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHH
Confidence 00 0 0111235677888898765444 4557999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
|||+.+|++++|||||+|||+.++..+.+.++++.+ .+++|++++|+.+++.+.+|++++|++|++++.|+.+++
T Consensus 146 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD--RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999999999999999999999998754 255677789999999999999999999999999987665
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=293.58 Aligned_cols=205 Identities=23% Similarity=0.277 Sum_probs=159.1
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcC--c-
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--Y- 754 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g--~- 754 (1247)
++++|+++.++.... ...++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++| .
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCc
Confidence 567888877642100 00124699999999999999999999999999999999998653 479999984 2
Q ss_pred -cCCc---cc----ccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCC
Q 000867 755 -PKKQ---ET----FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-RQSLVGLP 825 (1247)
Q Consensus 755 -~~~~---~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~ 825 (1247)
+... .. .++.++|++|++.+++.+||+|++.+..... ....+..++++.++++.+|+.+. .+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 147 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPP--- 147 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCc---
Confidence 3221 11 1346899999999999999999998754322 12233344567889999999753 34443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+..|+
T Consensus 148 --~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~ 218 (224)
T TIGR02324 148 --ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADR 218 (224)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcce
Confidence 479999999999999999999999999999999999999999999998777899999999953 23344554
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.8e-32 Score=305.37 Aligned_cols=202 Identities=24% Similarity=0.286 Sum_probs=165.7
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCe-EEEEEEEcCcc
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYP 755 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~-~~G~i~i~g~~ 755 (1247)
.++++|+++.++. .++.+|+|+|++|++||+++|+||||||||||+++|+|..++.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4889999887631 12359999999999999999999999999999999999765321 13899999988
Q ss_pred CCcc---cccceEEEeccCCC-CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 756 KKQE---TFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 756 ~~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
.... ..++.+||++|++. .++..||.||+.|....+ ..+.++.+++++++++.+||.+..+..+ +.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 6532 23457899999974 567789999998764322 2334455567889999999988777665 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++. + ...|+
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~ 212 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQ 212 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCE
Confidence 99999999999999999999999999999999999999999998764 8999999999974 3 45676
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-32 Score=297.29 Aligned_cols=185 Identities=27% Similarity=0.373 Sum_probs=152.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|+++.. .++.++|++|++.+++.+||+||+.++....+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~-- 104 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVP-- 104 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHcCCC--
Confidence 47999999999999999999999886 9999999987653 3467999999988888899999998865322100
Q ss_pred cchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHHh
Q 000867 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1247)
. ++....++++++.+||.+..+. .+..||||||||++|||||+
T Consensus 105 --------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrl~la~al~ 147 (220)
T cd03293 105 --------K------------------------AEARERAEELLELVGLSGFENA-----YPHQLSGGMRQRVALARALA 147 (220)
T ss_pred --------H------------------------HHHHHHHHHHHHHcCChhhhhC-----CcccCCHHHHHHHHHHHHHH
Confidence 0 0011235678889999765444 34579999999999999999
Q ss_pred cCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEec--CCcEEEecCc
Q 000867 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS--DAQIVYQGPR 230 (1247)
Q Consensus 161 ~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~--~G~v~~~G~~ 230 (1247)
.+|++++|||||+|||+.++..+.+.++++.+. .+++|++++|+.+++.+.+|++++|+ +|++++.++.
T Consensus 148 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 148 VDPDVLLLDEPFSALDALTREQLQEELLDIWRE-TGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999987543 35567778999989999999999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-32 Score=295.12 Aligned_cols=195 Identities=24% Similarity=0.367 Sum_probs=158.6
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.+. ++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 588999987763 2359999999999999999999999999999999999765 3479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 000867 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGLST 832 (1247)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSg 832 (1247)
.. ..+++.++|++|++.+++ .|++||+.+....+.. .. .+++++++++.+++. ...++.+ +.|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKNI-----AELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCCc-----ccCCH
Confidence 42 224567899999988887 4999999875433211 11 124567899999995 3455554 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++.++ |.|||+++|++.. + +..|+
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~ 206 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADK 206 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999998754 8999999999864 2 33554
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-32 Score=311.18 Aligned_cols=190 Identities=25% Similarity=0.352 Sum_probs=159.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.+.+.+..
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~ 106 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK 106 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 99999999887542 22467999999999999999999999865442210
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
..+....++++++.+||.+..+.. ++.|||||||||+||+|
T Consensus 107 ----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 107 ----------------------------------GQLLKQRVEEMIELVGLRPEQHKK-----IGQLSKGYRQRVGLAQA 147 (301)
T ss_pred ----------------------------------HHHHHHHHHHHHHHCCCchHhcCc-----hhhCCHHHHHHHHHHHH
Confidence 001112356788999998766544 45799999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
|+++|++++|||||+|||+.++.++++.++++. . +++|++++|+.+++.++||+|++|++|++++.|+.+++..
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~--~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K--DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999874 2 3677779999999999999999999999999999988754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-32 Score=296.81 Aligned_cols=196 Identities=24% Similarity=0.289 Sum_probs=160.2
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++. ...|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~---------------~~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH---------------LPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC---------------ccceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 568888887631 1238999999999999999999999999999999865 34799999998764
Q ss_pred cc-cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000867 758 QE-TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1247)
Q Consensus 758 ~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~ 836 (1247)
.. ..++.++|++|++.+++.+|+.||+.+...... .. .+..+++++++++.+|+.+..++.+ +.|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 32 124568999999999999999999976532111 11 1233456889999999988777765 469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 837 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|++|||+++.+|++++|||||+|||..++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 199 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPR 199 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999998754 899999999986 34455666
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-32 Score=342.31 Aligned_cols=195 Identities=24% Similarity=0.373 Sum_probs=160.8
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|+++.+. +++++|+|+|++++|||++||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 4699999986542 1246999999999999999999999999999999999987 3 37999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-------LRQSLVGLP 825 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~ 825 (1247)
+.+ ..+++.++||+|++.++. -|++||+.++. ++.+. ++++++++..++.+ -.|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 754 456778999999999887 59999998752 12333 33556666666543 236777654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.+||||||||++|||||+++|+||+||||||+||++++..+++.|+++. +++|+|+++|+++ ..+.+|+
T Consensus 483 -G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~ 552 (588)
T PRK11174 483 -AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQ 552 (588)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCE
Confidence 45799999999999999999999999999999999999999999999875 5799999999994 4566777
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-32 Score=300.32 Aligned_cols=189 Identities=22% Similarity=0.312 Sum_probs=152.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC-----CCCCceeeEEEECCccCCCCc-----ccceEEEeccccccCCCCCHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKL-----DSKLKFSGRVTYNGHGMDEFV-----PQRTAAYISQHDVHIGEMTVRETLAF 70 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~-----~~~~~~~G~v~~~g~~~~~~~-----~~~~i~yv~Q~~~~~~~lTv~e~l~f 70 (1247)
+++|+||||||||||+++|+|.. +|. +|+|.++|+++.... .++.++|++|++.++ .+||+||+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~ 103 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAY 103 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHh
Confidence 47999999999999999999999 776 999999998764322 246799999998877 7899999988
Q ss_pred HHhccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCcccccccccc
Q 000867 71 SARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQK 150 (1247)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 150 (1247)
+....+.. . . .+.+..++++++.+||.+..+.... +.+||||||
T Consensus 104 ~~~~~~~~---~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~ 147 (227)
T cd03260 104 GLRLHGIK---L------K------------------------EELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQ 147 (227)
T ss_pred HHHhcCCC---c------H------------------------HHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHH
Confidence 64322100 0 0 0011234667888999765443320 357999999
Q ss_pred chhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCc
Q 000867 151 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1247)
Q Consensus 151 qRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~ 230 (1247)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|++++|+.+++.+.||++++|++|++++.|++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 999999999999999999999999999999999999998754 3 6677789999999999999999999999999987
Q ss_pred ch
Q 000867 231 EL 232 (1247)
Q Consensus 231 ~~ 232 (1247)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 64
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=306.03 Aligned_cols=207 Identities=19% Similarity=0.244 Sum_probs=163.5
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeEEEEEEEc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 752 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~i~ 752 (1247)
..++++|+++.+.. +.+.+|+|+|++|++||++||+||||||||||+++|+|.... .+.+|+|.+|
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 46999999988741 124599999999999999999999999999999999997531 2357999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000867 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827 (1247)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 827 (1247)
|.++.. ...++.++|++|++.+++ .|++||+.|..... ...+.+..++.++++++.++|.+..++.++. ..
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~ 223 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN--GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AG 223 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc--CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-Cc
Confidence 998752 234667999999998875 79999998864321 1111222334567888888885433333332 34
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Dr 293 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDE 293 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 57999999999999999999999999999999999999999999998865 699999999985 34455666
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=286.61 Aligned_cols=183 Identities=20% Similarity=0.300 Sum_probs=152.3
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++++. ++.+++ +|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP--SSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCcccC
Confidence 56788887763 123555 9999999999999999999999999999998653 4899999998765
Q ss_pred cccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000867 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKR 837 (1247)
Q Consensus 758 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r 837 (1247)
... ++.++|++|+..+++..||+||+.+..... . .++.++++++.+++.+..++.+ +.||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHH
Confidence 322 345799999987778899999998754322 1 1234678889999987666654 4699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCC
Q 000867 838 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 838 ~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1247)
++||||++.+|++++|||||+|||+.+...+.+.|++..++|+|+|+++|++.
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999876667899999999985
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-32 Score=295.68 Aligned_cols=183 Identities=26% Similarity=0.365 Sum_probs=151.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~-- 101 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLK-- 101 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCC--
Confidence 47999999999999999999999887 9999999987653 23567999999998888899999998864322100
Q ss_pred cchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHHh
Q 000867 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1247)
..+.+..++++++.+||++..++ .+.+||||||||++|||||+
T Consensus 102 --------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 102 --------------------------------KEEARRRIDEWLERLELSEYANK-----RVEELSKGNQQKVQFIAAVI 144 (210)
T ss_pred --------------------------------hHHHHHHHHHHHHHcCChHHHhC-----cHhhCCHHHHHHHHHHHHHh
Confidence 00112235677888999765554 34579999999999999999
Q ss_pred cCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEec
Q 000867 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1247)
Q Consensus 161 ~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G 228 (1247)
.+|++++|||||+|||+.++..+.+.++++.+ . +.+|++++|+.+++.+++|++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELAR-A-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998754 2 456777899999999999999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.7e-32 Score=282.57 Aligned_cols=161 Identities=29% Similarity=0.415 Sum_probs=139.4
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+||.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEccc
Confidence 4677777653 13599999999999999999999999999999999998653 47999999987643
Q ss_pred --ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000867 759 --ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1247)
Q Consensus 759 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~ 836 (1247)
..+++.++|++|++.+++.+|+.|++. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567899999998888899999873 8999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 837 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|++|||||+.+|++++|||||+|||+.++..+.+.|+++.++|.|+|+++|++. .+.+..|+
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~ 164 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDR 164 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999998877899999999986 44445555
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-32 Score=295.62 Aligned_cols=185 Identities=29% Similarity=0.402 Sum_probs=151.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++..||+||+.++....+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~- 103 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP- 103 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCC-
Confidence 37899999999999999999999886 999999998875322 2357999999988888899999998864322100
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
.++.+..++++++.+||.+..+. .+..||||||||++|||||
T Consensus 104 ---------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr~~laral 145 (213)
T cd03301 104 ---------------------------------KDEIDERVREVAELLQIEHLLDR-----KPKQLSGGQRQRVALGRAI 145 (213)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCHHHHhC-----ChhhCCHHHHHHHHHHHHH
Confidence 00112235677888999765554 4457999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEec
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G 228 (1247)
+.+|++++|||||+|||+.++..+.+.++++++.. +.+|++++|+.+++.+++|++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL-GTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999876533 456677899999999999999999999998876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-32 Score=337.55 Aligned_cols=194 Identities=31% Similarity=0.452 Sum_probs=160.3
Q ss_pred CCcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcC
Q 000867 674 EPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 753 (1247)
Q Consensus 674 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g 753 (1247)
..+.++|+|+.++++.++ +..+|+|+|+.|++||.+||+|||||||||++++|.+..+ +.+|+|.+||
T Consensus 347 ~~g~ief~nV~FsYPsRp----------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG 414 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRP----------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDG 414 (1228)
T ss_pred cccceEEEEEEecCCCCC----------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcC
Confidence 456899999999987543 3469999999999999999999999999999999999776 4589999999
Q ss_pred ccCCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-------CCCcccccccc
Q 000867 754 YPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV-------ELNPLRQSLVG 823 (1247)
Q Consensus 754 ~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------~l~~~~~~~~g 823 (1247)
.++.. ...+..+|.|.|+|.++. .|++||+.|+- ++.+.++ ++++.+.. .|.+-.|+.+|
T Consensus 415 ~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~-----~dat~~~----i~~a~k~ana~~fi~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGK-----PDATREE----IEEAAKAANAHDFILKLPDGYDTLVG 484 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCC-----CcccHHH----HHHHHHHccHHHHHHhhHHhhccccc
Confidence 98764 345678999999998775 79999998752 2222222 33333332 34455678888
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCCh
Q 000867 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891 (1247)
Q Consensus 824 ~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 891 (1247)
..+. .||||||||++|||||+++|+||+||||||+||+++.+.++++|.+.. +|+|.|+++|+.|.
T Consensus 485 e~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLSt 550 (1228)
T KOG0055|consen 485 ERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLST 550 (1228)
T ss_pred CCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhh
Confidence 6554 499999999999999999999999999999999999999999998764 68999999999863
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-32 Score=308.87 Aligned_cols=207 Identities=25% Similarity=0.354 Sum_probs=163.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-------cccceEEEecccc--ccCCCCCHHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHD--VHIGEMTVRETLAFS 71 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~i~yv~Q~~--~~~~~lTv~e~l~f~ 71 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++ .++ ..||.||+.|+
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~~~l~~~ 109 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF-EETVLKDVAFG 109 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc-cchHHHHHHhH
Confidence 47999999999999999999999987 99999999987421 1246799999985 444 46999999987
Q ss_pred HhccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcc-cccccccCCcccccccccc
Q 000867 72 ARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEV-CDDTLVGDEMVRGISGGQK 150 (1247)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqr 150 (1247)
....+.. ..+.+..++++++.+||.+ ..+ +.+..||||||
T Consensus 110 ~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~-----~~~~~LSgGqk 150 (288)
T PRK13643 110 PQNFGIP----------------------------------KEKAEKIAAEKLEMVGLADEFWE-----KSPFELSGGQM 150 (288)
T ss_pred HHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhcc-----CCcccCCHHHH
Confidence 5422110 0011224567788899852 333 45668999999
Q ss_pred chhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCc
Q 000867 151 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1247)
Q Consensus 151 qRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~ 230 (1247)
||++|||+|+.+|++++|||||+|||+.++..+.+.++++.+ .+.+|++++|+.+++..+||+|++|++|++++.|++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ--SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998754 356777789999999999999999999999999999
Q ss_pred chHH---HHHHhCCCCCCCCCChhh
Q 000867 231 ELVL---DFFESMGFKCPERKGVAD 252 (1247)
Q Consensus 231 ~~~~---~~f~~~G~~~~~~~~~~~ 252 (1247)
+++. +.++..|+.+|.....++
T Consensus 229 ~~~~~~~~~~~~~~~~~p~~~~~~~ 253 (288)
T PRK13643 229 SDVFQEVDFLKAHELGVPKATHFAD 253 (288)
T ss_pred HHHHcCHHHHHHcCCCCChHHHHHH
Confidence 8874 234456666655443333
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=306.98 Aligned_cols=209 Identities=20% Similarity=0.281 Sum_probs=166.6
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eEEEEEEEcCcc
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 755 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~i~g~~ 755 (1247)
.++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|..+.. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 58899998876421 12346999999999999999999999999999999999986532 237999999998
Q ss_pred CCcc---c---c-cceEEEeccCC--CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000867 756 KKQE---T---F-TRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826 (1247)
Q Consensus 756 ~~~~---~---~-~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 826 (1247)
+... . + ++.++||+|++ .+.|.+|+.+++........ ..+.++..+++.++++.+||.+..+.. +..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~--~~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM--KMY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh--cCC
Confidence 6431 1 1 24699999998 67899999999876544321 233445556788899999997533221 123
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 827 ~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.+||||||||++|||||+.+|++|++||||+|||..++..+++.|+++.++ |.|+|+++||++ .+.+..|+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dr 231 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDK 231 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCE
Confidence 4679999999999999999999999999999999999999999999998765 899999999986 44556677
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=297.29 Aligned_cols=200 Identities=22% Similarity=0.306 Sum_probs=159.8
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~i~g 753 (1247)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+. .+.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 478899988763 23599999999999999999999999999999999996431 12479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 824 (1247)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 123567899999988887 899999988654321 1122334556788888888753 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +++|||+++|++. .+.+..|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~ 214 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDK 214 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCE
Confidence 35799999999999999999999999999999999999999999999985 4799999999975 45556666
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-32 Score=295.28 Aligned_cols=183 Identities=27% Similarity=0.388 Sum_probs=151.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV--PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~--~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.+.....+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP 103 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC
Confidence 47999999999999999999999887 999999998765321 2467999999999899999999998864322100
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
..+....++++++.+||++..++. +..|||||||||+||||
T Consensus 104 ----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~a 144 (211)
T cd03264 104 ----------------------------------SKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGIAQA 144 (211)
T ss_pred ----------------------------------HHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHHHHH
Confidence 000112356778889997655544 45799999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEec
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G 228 (1247)
|+.+|++++|||||+|||+.++..+.+.++++.+ + +++++++|+.+.+.+++|++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998753 3 56777899999999999999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-32 Score=313.58 Aligned_cols=191 Identities=23% Similarity=0.281 Sum_probs=158.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCc----cCCCCc------c-cceEEEeccccccCCCCCHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH----GMDEFV------P-QRTAAYISQHDVHIGEMTVRETLA 69 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~----~~~~~~------~-~~~i~yv~Q~~~~~~~lTv~e~l~ 69 (1247)
+++|+||||||||||+++|+|+++|+ +|+|.++|+ ++.... . ++.++||+|++.+++.+||+||+.
T Consensus 52 i~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~ 128 (382)
T TIGR03415 52 ICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVA 128 (382)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHH
Confidence 47999999999999999999999987 999999996 332211 1 247999999999999999999999
Q ss_pred HHHhccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccc
Q 000867 70 FSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQ 149 (1247)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 149 (1247)
++....+.. + .+.+..++++++.+||++..+. .+..|||||
T Consensus 129 ~~~~~~g~~----------~------------------------~~~~~~a~e~le~vgL~~~~~~-----~~~~LSgGq 169 (382)
T TIGR03415 129 FGLEMQGMP----------E------------------------AERRKRVDEQLELVGLAQWADK-----KPGELSGGM 169 (382)
T ss_pred HHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHH
Confidence 975432210 0 0112235678999999765554 455799999
Q ss_pred cchhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecC
Q 000867 150 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGP 229 (1247)
Q Consensus 150 rqRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~ 229 (1247)
||||+|||||+.+|+|+||||||+|||+.++.++.+.|+++.+. .+++|++++|+.+++.+++|+|++|++|+++..|+
T Consensus 170 ~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~-~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~ 248 (382)
T TIGR03415 170 QQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAK-LNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGT 248 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999987653 35677779999999999999999999999999999
Q ss_pred cchHH
Q 000867 230 RELVL 234 (1247)
Q Consensus 230 ~~~~~ 234 (1247)
++++.
T Consensus 249 ~~ei~ 253 (382)
T TIGR03415 249 PEEIV 253 (382)
T ss_pred HHHHh
Confidence 88775
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-32 Score=308.24 Aligned_cols=191 Identities=21% Similarity=0.299 Sum_probs=155.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-------cccceEEEeccccc-cCCCCCHHHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHDV-HIGEMTVRETLAFSA 72 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~i~yv~Q~~~-~~~~lTv~e~l~f~~ 72 (1247)
+++|+||||||||||+++|+|+.+|+ +|+|.++|+++... ..++.++||+|++. .+...||+||+.|+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~ 111 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGP 111 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHH
Confidence 47999999999999999999999987 99999999987421 12357999999852 344579999999865
Q ss_pred hccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCc-ccccccccCCccccccccccc
Q 000867 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE-VCDDTLVGDEMVRGISGGQKK 151 (1247)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrq 151 (1247)
...+.. ..+.+..++++++.+||. ...+ +.+..|||||||
T Consensus 112 ~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~LSgGq~q 152 (290)
T PRK13634 112 MNFGVS----------------------------------EEDAKQKAREMIELVGLPEELLA-----RSPFELSGGQMR 152 (290)
T ss_pred HHcCCC----------------------------------HHHHHHHHHHHHHHCCCChhhhh-----CCcccCCHHHHH
Confidence 321100 001122457789999996 3344 445679999999
Q ss_pred hhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcc
Q 000867 152 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1247)
Q Consensus 152 RvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~ 231 (1247)
||+|||||+.+|++++|||||+|||+.++.++.+.|+++.+. .+++|++++|+.+++...||+|++|++|++++.|+++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~-~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999987653 3567777999999999999999999999999999988
Q ss_pred hHH
Q 000867 232 LVL 234 (1247)
Q Consensus 232 ~~~ 234 (1247)
++.
T Consensus 232 ~~~ 234 (290)
T PRK13634 232 EIF 234 (290)
T ss_pred HHh
Confidence 764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=298.03 Aligned_cols=203 Identities=20% Similarity=0.266 Sum_probs=158.4
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eEEEEEEEcCcc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISGYP 755 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~i~g~~ 755 (1247)
+++|+++.++ .+.+|+|+||++++||+++|+|+||||||||+++|+|... +. +.+|+|.++|.+
T Consensus 7 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 73 (251)
T PRK14244 7 SVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGID 73 (251)
T ss_pred EeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEe
Confidence 4677776653 2459999999999999999999999999999999999753 11 247999999987
Q ss_pred CCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000867 756 KKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGL 830 (1247)
Q Consensus 756 ~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 830 (1247)
+.. ...++.++|++|++.+++. |++||+.+....+. .....+..++.++++++.+|+.+...+... .....|
T Consensus 74 i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~L 150 (251)
T PRK14244 74 VYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFEL 150 (251)
T ss_pred hHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhhC
Confidence 532 1245678999999888875 99999987643321 111223344567889999999652211111 123579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 831 SgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+..|+
T Consensus 151 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~ 217 (251)
T PRK14244 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDR 217 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCE
Confidence 9999999999999999999999999999999999999999999985 4899999999986 45556676
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-32 Score=312.36 Aligned_cols=188 Identities=27% Similarity=0.336 Sum_probs=156.9
Q ss_pred EeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCCccc
Q 000867 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYD 82 (1247)
Q Consensus 4 ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~ 82 (1247)
|+|||||||||||++|+|+.+|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.|+.+..+..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~---- 73 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVP---- 73 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCC----
Confidence 68999999999999999999987 999999998875432 2467999999999999999999999975432100
Q ss_pred hhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHHhcC
Q 000867 83 MLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGP 162 (1247)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~~~ 162 (1247)
+ .+.+..++++++.+||++..+ +.+..|||||||||+|||||+.+
T Consensus 74 ------~------------------------~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qRvalaraL~~~ 118 (325)
T TIGR01187 74 ------R------------------------AEIKPRVLEALRLVQLEEFAD-----RKPHQLSGGQQQRVALARALVFK 118 (325)
T ss_pred ------H------------------------HHHHHHHHHHHHHcCCcchhc-----CChhhCCHHHHHHHHHHHHHHhC
Confidence 0 011123567889999976544 44568999999999999999999
Q ss_pred CeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 163 ALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 163 p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|++++|||||+|||+.++..+.+.|+++.+. .++++++++|+..++..++|+|++|++|+++..|+++++.
T Consensus 119 p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~-~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQ-LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999987654 3556677899999999999999999999999999988764
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=297.71 Aligned_cols=200 Identities=22% Similarity=0.260 Sum_probs=160.8
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 753 (1247)
-++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 477889887763 235999999999999999999999999999999999975421 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 824 (1247)
.++.. ...++.++|++|++.+++ .|++||+.|...... ....+..+++++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 88642 123566899999998887 899999987654321 1122334456788999998853 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~ 215 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDY 215 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCE
Confidence 357999999999999999999999999999999999999999999999865 689999999985 55666777
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=300.77 Aligned_cols=209 Identities=19% Similarity=0.232 Sum_probs=164.6
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++++..+.. ....+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 3789999987742110 0000124699999999999999999999999999999999998763 479999999876
Q ss_pred Ccc---cccceEEEeccCCC--CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCC
Q 000867 757 KQE---TFTRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGESGL 830 (1247)
Q Consensus 757 ~~~---~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~l 830 (1247)
... ..++.++|++|++. +++.+|+.|++.+....+. .......++.++++++.+|+. +..+..+ ..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhc
Confidence 421 22356899999975 5678899999987654332 222334445688999999994 4555543 469
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 831 SgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|+++ ++.+..|+
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~ 219 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQ 219 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCE
Confidence 999999999999999999999999999999999999999999998764 899999999985 45556676
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=311.43 Aligned_cols=175 Identities=24% Similarity=0.363 Sum_probs=151.9
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc-------ccccceEEEeccCCCCCCCcCH
Q 000867 708 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFTRISGYCEQNDIHSPFVTV 780 (1247)
Q Consensus 708 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 780 (1247)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999998653 47999999987532 1235679999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000867 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860 (1247)
Q Consensus 781 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgL 860 (1247)
+||+.|... ...+++++++++.+||.+..+..+ +.||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 112345789999999988777765 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 861 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 861 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|+.++..+.+.|+++.++ |+|+|+++|++. ++..+.|+
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~ 198 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADR 198 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCE
Confidence 999999999999998765 899999999985 56677777
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=302.51 Aligned_cols=201 Identities=23% Similarity=0.287 Sum_probs=164.9
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++.. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 47899998876410 12359999999999999999999999999999999999876 3479999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 757 KQ---ETFTRISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
.. ...++.+||++|++. .++..||.||+.+..... ....+...++++++++.+||.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567999999974 566789999998764322 1233444456889999999987776654 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++..- ...|+
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~--~~~d~ 209 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEA--ASSDR 209 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HhCCE
Confidence 9999999999999999999999999999999999999999998765 89999999998753 23566
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.8e-32 Score=295.97 Aligned_cols=186 Identities=25% Similarity=0.307 Sum_probs=151.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--eEEEEEEEcCccCCcccc-cceEEEeccCCC--CCCCcC
Q 000867 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISGYPKKQETF-TRISGYCEQNDI--HSPFVT 779 (1247)
Q Consensus 705 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~~~v~q~~~--~~~~lt 779 (1247)
+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999986531 147999999988654322 357899999974 557789
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000867 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP---LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 856 (1247)
Q Consensus 780 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~---~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEp 856 (1247)
+.|++.+...... . ..+..+++++++++.+++.+ ..+..+ +.||||||||++|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG--K-LSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC--c-cHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999876543221 1 12333456889999999973 344443 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 857 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 857 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|+|||..+...+.+.|+++.++ |+|||+++|+++ ++....|+
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 195 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADE 195 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999998764 899999999986 45566676
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=297.96 Aligned_cols=200 Identities=28% Similarity=0.338 Sum_probs=159.7
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~i~g 753 (1247)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478999988763 2359999999999999999999999999999999999632 21 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 824 (1247)
.+... ..+++.++|++|++.+++ .|++||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87632 123567999999998887 899999987643321 1122333456778899998753 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.+.||||||||++|||||+.+|++|+|||||+|||..++..+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~ 216 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDR 216 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCE
Confidence 357999999999999999999999999999999999999999999999864 689999999986 46666776
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-32 Score=315.20 Aligned_cols=189 Identities=24% Similarity=0.390 Sum_probs=157.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-------cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++... ..++.++|++|++.+++.+||+||+.|+..
T Consensus 25 i~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 101 (354)
T TIGR02142 25 VTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK 101 (354)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence 47999999999999999999999987 99999999886421 124679999999999999999999998643
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
... . .+.+..++++++.+||.+..+ +.+..|||||||||
T Consensus 102 ~~~------------~------------------------~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGqkqRv 140 (354)
T TIGR02142 102 RAR------------P------------------------SERRISFERVIELLGIGHLLG-----RLPGRLSGGEKQRV 140 (354)
T ss_pred ccC------------h------------------------hHHHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHH
Confidence 110 0 001123567889999976554 44567999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .++++++++|+.+++..++|++++|++|+++..|+++++
T Consensus 141 alAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 141 AIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAE-FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999999999999999999999997653 355677789999999999999999999999999998876
Q ss_pred H
Q 000867 234 L 234 (1247)
Q Consensus 234 ~ 234 (1247)
.
T Consensus 220 ~ 220 (354)
T TIGR02142 220 W 220 (354)
T ss_pred h
Confidence 4
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=311.84 Aligned_cols=179 Identities=24% Similarity=0.359 Sum_probs=153.8
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc-------ccccceEEEeccCCCCCCCcCH
Q 000867 708 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFTRISGYCEQNDIHSPFVTV 780 (1247)
Q Consensus 708 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 780 (1247)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 89999999999999999999999999999998653 47999999987632 1235679999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000867 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860 (1247)
Q Consensus 781 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgL 860 (1247)
+||+.|..... .....+++++++++.+||.+..+..+ +.||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998865321 12233456889999999988777765 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 861 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 861 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|+.++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~ 201 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADR 201 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999998765 899999999986 46666777
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-32 Score=297.24 Aligned_cols=188 Identities=30% Similarity=0.429 Sum_probs=154.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|+++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP 106 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC
Confidence 47999999999999999999999887 99999999876432 22457999999988888999999998864322100
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
. .+....++++++.+||.+..++. +..||||||||++||||
T Consensus 107 ----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~a 147 (220)
T cd03263 107 ----------K------------------------SEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSLAIA 147 (220)
T ss_pred ----------H------------------------HHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHHHHH
Confidence 0 00112356678889997665544 45799999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
|+.+|++++|||||+|||+.++.++.+.|+++.+ + .++++++|+.+.+.+.+|++++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999998743 3 6677789999999999999999999999999987653
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-31 Score=304.74 Aligned_cols=210 Identities=24% Similarity=0.247 Sum_probs=166.9
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.+....... ...+...+|+|||++|++||++||+|+||||||||+++|+|.... .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 588999998774221000 001124699999999999999999999999999999999998653 479999999886
Q ss_pred Ccc------cccceEEEeccCC--CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000867 757 KQE------TFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGE 827 (1247)
Q Consensus 757 ~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~ 827 (1247)
... .+++.++||+|++ .+.|.+|+.+++........ ....++.++++.++++.+||.+ ..+..+
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p----- 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYP----- 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCC-----
Confidence 431 2456799999997 58889999999876543321 2234455667899999999963 445543
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
..||||||||++|||||+.+|++|++||||++||..++..+++.|+++.++ |.|+|++||+.+ .+.+.-|+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adr 224 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADE 224 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999998764 899999999985 34445566
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-32 Score=341.41 Aligned_cols=192 Identities=24% Similarity=0.333 Sum_probs=150.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
.+||+||||||||||+++|+|++ |. +|+|.+||.++++.. .++.++||+|++.+|. .|++|||.++..-
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~~~--- 449 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGNPD--- 449 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCCCC---
Confidence 37999999999999999999999 76 899999999886543 3578999999988775 5999999985210
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
.. .++..+++... ..++.+ -.|+++.||.||++ +.+||||||||++|||
T Consensus 450 ---------~~-------------~eei~~al~~a------~l~~~i--~~lp~G~dT~vge~-G~~LSGGQrQRialAR 498 (588)
T PRK11174 450 ---------AS-------------DEQLQQALENA------WVSEFL--PLLPQGLDTPIGDQ-AAGLSVGQAQRLALAR 498 (588)
T ss_pred ---------CC-------------HHHHHHHHHHh------CHHHHH--HhcccccccccccC-CCCCCHHHHHHHHHHH
Confidence 00 00111111000 011222 24788899999976 4579999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 158 al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
||+++|+|++||||||+||+.++..|.+.+++.. . ++|+++++|.. +....+|+|++|++|++++.|+++++.+
T Consensus 499 All~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~-~~TvIiItHrl-~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 499 ALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--R-RQTTLMVTHQL-EDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--C-CCEEEEEecCh-HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 9999999999999999999999999999998763 2 34445566666 4567799999999999999999998864
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=298.47 Aligned_cols=204 Identities=21% Similarity=0.277 Sum_probs=160.4
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~i~g 753 (1247)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|... +. ..+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 488999988763 2359999999999999999999999999999999999754 21 1479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 828 (1247)
.+... ...++.+||++|++.+++. |++||+.+....+. ....++.+++++++++.+++.+...... +...+
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcc
Confidence 87642 1335678999999888875 99999987643321 1123334456778899999854211111 11235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|+++|++. .+.+..|+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~ 223 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQ 223 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999864 799999999986 45556676
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-32 Score=300.21 Aligned_cols=198 Identities=25% Similarity=0.355 Sum_probs=156.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 105 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLG 105 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcc
Confidence 47999999999999999999999886 999999998875432 245799999998888989999999875321
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
.. .... ... .. ......+.++++++.+||.+..+ +.+..|||||||||+
T Consensus 106 ~~--~~~~---~~~------~~---------------~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~ 154 (241)
T cd03256 106 RR--STWR---SLF------GL---------------FPKEEKQRALAALERVGLLDKAY-----QRADQLSGGQQQRVA 154 (241)
T ss_pred cc--hhhh---hhc------cc---------------CcHHHHHHHHHHHHHcCChhhhC-----CCcccCCHHHHHHHH
Confidence 00 0000 000 00 00011223566788899975444 345679999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++..++|++++|++|++++.|+++++
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 155 IARALMQQPKLILADEPVASLDPASSRQVMDLLKRINRE-EGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 999999999999999999999999999999999987653 355677789999999999999999999999999988765
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-32 Score=296.68 Aligned_cols=184 Identities=31% Similarity=0.424 Sum_probs=151.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+++|+|+||||||||+++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 109 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK 109 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCC
Confidence 37999999999999999999999887 99999999877532 22467999999998889899999998754321100
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
..+....++++++.+||.+..+. .+..||||||||++||||
T Consensus 110 ----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~lara 150 (218)
T cd03266 110 ----------------------------------GDELTARLEELADRLGMEELLDR-----RVGGFSTGMRQKVAIARA 150 (218)
T ss_pred ----------------------------------HHHHHHHHHHHHHHcCCHHHHhh-----hhhhcCHHHHHHHHHHHH
Confidence 00112235678899999765544 455799999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEec
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G 228 (1247)
++.+|++++|||||+|||+.++..+.+.|+++.+ . +.++++++|+..++.+.+|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-L-GKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998754 3 556777899999999999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=301.04 Aligned_cols=203 Identities=24% Similarity=0.390 Sum_probs=159.8
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEh
Confidence 588999988763 124599999999999999999999999999999999998653 479999999876
Q ss_pred CcccccceEEEeccCCCCC--CCcCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000867 757 KQETFTRISGYCEQNDIHS--PFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~--~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 833 (1247)
.....++.++|++|++.+. ...+++|++.+....... ........++.++++++.+||.+..++.++ .||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 4322234689999997653 234788887653210000 011112234457789999999887777654 69999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||++|||||+.+|++++|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~ 211 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDY 211 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998777899999999985 34455565
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=340.57 Aligned_cols=118 Identities=23% Similarity=0.276 Sum_probs=92.8
Q ss_pred CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCc
Q 000867 774 HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-RQSLVGLPGESGLSTEQRKRLTIAVELV---ANPS 849 (1247)
Q Consensus 774 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~lSgGqr~r~~ia~~l~---~~p~ 849 (1247)
.+...||.|+|.++..-........++..+++ ++++.+||.+. .+... ..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 44567999999877542211111223344455 57889999775 45554 469999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 850 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 850 il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+++|||||+|||..+...+++.|+++.++|.|||+++|++.. + +..|+
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDr 880 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADY 880 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCE
Confidence 999999999999999999999999998889999999999963 3 77777
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-31 Score=296.12 Aligned_cols=204 Identities=22% Similarity=0.291 Sum_probs=160.4
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 753 (1247)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g 69 (250)
T PRK14262 3 IIEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69 (250)
T ss_pred eEEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 377899987763 235999999999999999999999999999999999975421 2579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 828 (1247)
.++.. ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+..+... ....+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 145 (250)
T PRK14262 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGT 145 (250)
T ss_pred EEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChh
Confidence 87642 123567899999998887 899999987653321 1122334455788899998864211111 11235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++|||||+.+|++|+|||||+|||..++..+.+.|+++.+ ++|||+++|++. .+.+..|+
T Consensus 146 ~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~ 214 (250)
T PRK14262 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADY 214 (250)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999864 789999999986 35556666
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.1e-32 Score=309.23 Aligned_cols=189 Identities=23% Similarity=0.384 Sum_probs=153.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-------------------cccceEEEecccc--ccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------------------VPQRTAAYISQHD--VHI 59 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-------------------~~~~~i~yv~Q~~--~~~ 59 (1247)
+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... ..++.++||+|++ .++
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~ 130 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF 130 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccc
Confidence 47999999999999999999999987 99999999876431 1246799999986 455
Q ss_pred CCCCHHHHHHHHHhccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcc-ccccccc
Q 000867 60 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEV-CDDTLVG 138 (1247)
Q Consensus 60 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg 138 (1247)
+ .||+||+.|+....+.. ..+....++++++.+||+. ..
T Consensus 131 ~-~tv~eni~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~----- 170 (320)
T PRK13631 131 K-DTIEKDIMFGPVALGVK----------------------------------KSEAKKLAKFYLNKMGLDDSYL----- 170 (320)
T ss_pred c-chHHHHHHhhHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCChhHh-----
Confidence 4 59999998864321100 0011223567788899962 22
Q ss_pred CCccccccccccchhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEE
Q 000867 139 DEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 218 (1247)
Q Consensus 139 ~~~~~~LSGGqrqRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~ 218 (1247)
++.+.+|||||||||+|||||+.+|++++|||||+|||+.++.++.+.|+++.. .+++|++++|+.+++...||+|++
T Consensus 171 ~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~--~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 171 ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA--NNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEE
Confidence 345668999999999999999999999999999999999999999999998754 356677789999999999999999
Q ss_pred ecCCcEEEecCcchHH
Q 000867 219 LSDAQIVYQGPRELVL 234 (1247)
Q Consensus 219 l~~G~v~~~G~~~~~~ 234 (1247)
|++|++++.|+++++.
T Consensus 249 l~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 249 MDKGKILKTGTPYEIF 264 (320)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.6e-32 Score=299.66 Aligned_cols=191 Identities=25% Similarity=0.369 Sum_probs=156.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.++....+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 105 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW 105 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999886 999999998765322 245799999999899899999999886432210
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcc--cccccccCCccccccccccchhHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEV--CDDTLVGDEMVRGISGGQKKRVTT 155 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~~t~vg~~~~~~LSGGqrqRvsi 155 (1247)
+ ..+....+.++++.+||+. .. ++.+.+|||||||||+|
T Consensus 106 ----~------------------------------~~~~~~~~~~~l~~l~l~~~~~~-----~~~~~~LS~G~~qrv~l 146 (242)
T cd03295 106 ----P------------------------------KEKIRERADELLALVGLDPAEFA-----DRYPHELSGGQQQRVGV 146 (242)
T ss_pred ----C------------------------------HHHHHHHHHHHHHHcCCCcHHHH-----hcChhhCCHHHHHHHHH
Confidence 0 0001123566788899974 22 34566899999999999
Q ss_pred HHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 156 A~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++...+|+|++|++|++++.|+++++.
T Consensus 147 aral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 147 ARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE-LGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999987653 3566777899998999999999999999999999876653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-31 Score=297.51 Aligned_cols=200 Identities=22% Similarity=0.304 Sum_probs=160.5
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-e--EEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~-~--~~G~i~i~g 753 (1247)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+.. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 578999988763 235999999999999999999999999999999999975422 1 479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 824 (1247)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ..+....++.++++++.+++.+ ..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87632 223457899999998887 899999987654331 1122333456778899988843 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
...||||||||++|||||+.+|++++|||||+|||+.+...+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~ 218 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDF 218 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCe
Confidence 357999999999999999999999999999999999999999999999864 689999999986 45555665
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-31 Score=305.98 Aligned_cols=208 Identities=16% Similarity=0.196 Sum_probs=162.3
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--CeEEEEEEEcCc
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGY 754 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~--~~~~G~i~i~g~ 754 (1247)
-++++|+++.+... .+...+|+|||++|++||++||+|+||||||||+++|+|..+. ...+|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 37889998877421 1234699999999999999999999999999999999997642 235799999998
Q ss_pred cCCcc---c----ccceEEEeccCCC--CCCCcCHHHHHHHHhhccCCCC---CCHHHHHHHHHHHHHHcCCCccc---c
Q 000867 755 PKKQE---T----FTRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPE---VDSETQKMFIEEIMELVELNPLR---Q 819 (1247)
Q Consensus 755 ~~~~~---~----~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~l~l~~~~---~ 819 (1247)
++... . +++.++||+|++. +.|.+||.+++........... ....+.++++.++++.+||.+.. +
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 153 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR 153 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 76431 1 1346899999975 5788999999975422110000 11123445688999999997532 3
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhh
Q 000867 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFD 898 (1247)
Q Consensus 820 ~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd 898 (1247)
.. +..|||||||||+||+||+.+|++|++||||+|||+.++..+.+.|+++.++ |.|||++||+.+ .+.+..|
T Consensus 154 ~~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~d 227 (330)
T PRK15093 154 SF-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWAD 227 (330)
T ss_pred CC-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCC
Confidence 33 3579999999999999999999999999999999999999999999998764 899999999985 3445566
Q ss_pred c
Q 000867 899 E 899 (1247)
Q Consensus 899 ~ 899 (1247)
+
T Consensus 228 r 228 (330)
T PRK15093 228 K 228 (330)
T ss_pred E
Confidence 6
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-32 Score=293.16 Aligned_cols=180 Identities=25% Similarity=0.354 Sum_probs=149.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-cccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+||||||||||+++|+|..+|. +|+|.++|+++... ..++.++|++|++.+++.+||+||+.+.......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-- 102 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI-- 102 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCC--
Confidence 47899999999999999999999886 99999999876432 2245799999998889899999999886432100
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
.+..++++++.++|.+..+. .+..|||||||||+||||+
T Consensus 103 ------------------------------------~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al 141 (208)
T cd03268 103 ------------------------------------RKKRIDEVLDVVGLKDSAKK-----KVKGFSLGMKQRLGIALAL 141 (208)
T ss_pred ------------------------------------cHHHHHHHHHHcCCHHHHhh-----hHhhCCHHHHHHHHHHHHH
Confidence 01124567888888765544 4557999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEec
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G 228 (1247)
+.+|++++|||||+|||+.++..+.+.+++..+ . +.++++++|+.+++...+|++++|++|++++.|
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRD-Q-GITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998754 3 456777899999999999999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=327.80 Aligned_cols=202 Identities=26% Similarity=0.343 Sum_probs=166.9
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
-++++|++++++ ++.+|+|+||++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 378899988763 24599999999999999999999999999999999998653 479999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCcCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 757 KQE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 757 ~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
... ..++.++|++|++.+++.+||+|++.+....+.. ...+.+..+++++++++.+|+.+..+..++ .||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 143 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELS 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCC
Confidence 421 1235689999999899999999999886432211 112233344568899999999887777654 699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|++. ++-+..|+
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~ 210 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDD 210 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998777899999999985 35556676
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-32 Score=296.24 Aligned_cols=180 Identities=25% Similarity=0.355 Sum_probs=146.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc-------ccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-------PQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~-------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.++..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 108 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL 108 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHh
Confidence 47999999999999999999999887 999999998875422 13579999999988999999999998654
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
..+.. . .+.+..++++++.+||.+..+ +.++.|||||||||
T Consensus 109 ~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv 149 (218)
T cd03255 109 LAGVP----------K------------------------KERRERAEELLERVGLGDRLN-----HYPSELSGGQQQRV 149 (218)
T ss_pred hcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhh-----cChhhcCHHHHHHH
Confidence 32100 0 001123567888999976544 34557999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcE
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQI 224 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v 224 (1247)
+|||||+.+|++++|||||+|||+.++..+.+.++++.+. .+++|++++|+.+++. .||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE-AGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999987653 3556777888888876 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-32 Score=296.38 Aligned_cols=187 Identities=22% Similarity=0.384 Sum_probs=151.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.... .++.++|++|++.+++.+|++||+.++.....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 104 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR 104 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC
Confidence 47999999999999999999999987 999999998765432 13569999999989999999999988643210
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHh-CCcccccccccCCccccccccccchhHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVL-GLEVCDDTLVGDEMVRGISGGQKKRVTT 155 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqrqRvsi 155 (1247)
. . +....++.+++.+ ++++..+ +.+..||||||||++|
T Consensus 105 ---~----~-----------------------------~~~~~~~~~l~~~~~l~~~~~-----~~~~~LS~G~~qrv~l 143 (222)
T cd03224 105 ---R----A-----------------------------KRKARLERVYELFPRLKERRK-----QLAGTLSGGEQQMLAI 143 (222)
T ss_pred ---c----h-----------------------------hHHHHHHHHHHHHHhhhhhhh-----CchhhCCHHHHHHHHH
Confidence 0 0 0011133445555 3554333 3455799999999999
Q ss_pred HHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 156 A~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
||||+.+|++++|||||+|||+.++..+.+.|+++.+ .+++|++++|+.+++.+.+|++++|++|++++.|+.+++
T Consensus 144 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD--EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999998754 356677789999999999999999999999999987664
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=290.56 Aligned_cols=178 Identities=24% Similarity=0.344 Sum_probs=149.1
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc-------ccccceEEEeccCCCCCCCcCH
Q 000867 708 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFTRISGYCEQNDIHSPFVTV 780 (1247)
Q Consensus 708 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 780 (1247)
|+|+++++ |+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 99999999999999999999998653 47999999987531 1234578999999999989999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000867 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860 (1247)
Q Consensus 781 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgL 860 (1247)
+||+.+..... ..+..+++++++++.+|+.+..+..+ +.||||||||++||++|+.+|++++|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 22334456788999999987666654 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 861 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 861 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|+.++..+.+.|++++++ |+|||+++|++.. +-+..|+
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~ 201 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLSE-AEYLADR 201 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHHH-HHHhcCE
Confidence 999999999999998765 8999999999853 3344554
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-32 Score=293.12 Aligned_cols=177 Identities=27% Similarity=0.343 Sum_probs=145.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccc-cCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDV-HIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+|||||||||||++|+|..+|+ +|+|.++|.++.....++.++|++|++. .+..+||+||+.++.....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~--- 101 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD--- 101 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC---
Confidence 47999999999999999999999887 9999999987654333467999999864 3456799999987532110
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
.....++++++.+||.+..++ .+..||||||||++|||||
T Consensus 102 -----------------------------------~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral 141 (205)
T cd03226 102 -----------------------------------AGNEQAETVLKDLDLYALKER-----HPLSLSGGQKQRLAIAAAL 141 (205)
T ss_pred -----------------------------------ccHHHHHHHHHHcCCchhcCC-----CchhCCHHHHHHHHHHHHH
Confidence 001124667889999765554 4457999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEE
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIV 225 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~ 225 (1247)
+.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|++++|+.+++.+++|++++|++|+++
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-Q-GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999998754 3 556777899999999999999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.8e-32 Score=309.29 Aligned_cols=194 Identities=21% Similarity=0.219 Sum_probs=158.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHD--VHIGEMTVRETLAFSA 72 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~--~~~~~lTv~e~l~f~~ 72 (1247)
+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.... .++.++||+|++ .+++.+||.|||.+..
T Consensus 49 ~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l 125 (331)
T PRK15079 49 TLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPL 125 (331)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHH
Confidence 47999999999999999999999886 999999999875432 245799999996 5788999999998864
Q ss_pred hccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccch
Q 000867 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKR 152 (1247)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 152 (1247)
...... . ...+.+..++++++.+||.. .+.++.+..||||||||
T Consensus 126 ~~~~~~--------~------------------------~~~~~~~~~~~~l~~vgl~~----~~~~~~p~~LSgG~~QR 169 (331)
T PRK15079 126 RTYHPK--------L------------------------SRQEVKDRVKAMMLKVGLLP----NLINRYPHEFSGGQCQR 169 (331)
T ss_pred HHhccC--------C------------------------CHHHHHHHHHHHHHHcCCCh----HHhcCCcccCCHHHHHH
Confidence 321100 0 00112234567889999942 12345677899999999
Q ss_pred hHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcch
Q 000867 153 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPREL 232 (1247)
Q Consensus 153 vsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~ 232 (1247)
|+|||||+.+|+++++||||+|||..++.++++.|+++.+. .+.++++++|+...+.+++|+|++|++|++++.|+.++
T Consensus 170 v~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~ 248 (331)
T PRK15079 170 IGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDE 248 (331)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999987653 35677789999999999999999999999999999887
Q ss_pred HH
Q 000867 233 VL 234 (1247)
Q Consensus 233 ~~ 234 (1247)
+.
T Consensus 249 i~ 250 (331)
T PRK15079 249 VY 250 (331)
T ss_pred HH
Confidence 65
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-32 Score=307.76 Aligned_cols=190 Identities=22% Similarity=0.311 Sum_probs=153.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCC---------------------------CcccceEEEec
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE---------------------------FVPQRTAAYIS 53 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~---------------------------~~~~~~i~yv~ 53 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|.+... ...++.+|||+
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~ 111 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVF 111 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEe
Confidence 47999999999999999999999987 8999999875421 11246799999
Q ss_pred ccc-ccCCCCCHHHHHHHHHhccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCc-c
Q 000867 54 QHD-VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE-V 131 (1247)
Q Consensus 54 Q~~-~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~ 131 (1247)
|++ ..+...||+|||.|+....+.. .++....++++++.+||+ +
T Consensus 112 Q~~~~~l~~~tv~e~i~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~ 157 (305)
T PRK13651 112 QFAEYQLFEQTIEKDIIFGPVSMGVS----------------------------------KEEAKKRAAKYIELVGLDES 157 (305)
T ss_pred eCcccccccccHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChh
Confidence 985 3444579999999875422110 011122456788999996 3
Q ss_pred cccccccCCccccccccccchhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHh
Q 000867 132 CDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 211 (1247)
Q Consensus 132 ~~~t~vg~~~~~~LSGGqrqRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~ 211 (1247)
..+ +.+..|||||||||+|||+|+.+|++++|||||+|||+.++..+++.++++.+ . +.+|++++|+.+.+.+
T Consensus 158 ~~~-----~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 158 YLQ-----RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-GKTIILVTHDLDNVLE 230 (305)
T ss_pred hhh-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeeCHHHHHH
Confidence 333 45668999999999999999999999999999999999999999999998753 3 5667779999999999
Q ss_pred hcccEEEecCCcEEEecCcchHH
Q 000867 212 LFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 212 ~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
.||+|++|++|++++.|+++++.
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999988864
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-32 Score=315.28 Aligned_cols=194 Identities=24% Similarity=0.397 Sum_probs=159.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
+++|+||||||||||||+|+|.++|. +|+|.++|+++.... .++.++||+|++.+++.+||+||+.++..-..
T Consensus 31 iv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~- 106 (402)
T PRK09536 31 LVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHR- 106 (402)
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhc-
Confidence 47999999999999999999999987 999999998875432 24679999999988899999999998532100
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
.++.. . ..+.++.+++.++.+||.+..+. .++.|||||||||+|||
T Consensus 107 -~~~~~---~-------------------------~~~~~~~v~~~le~vgl~~~~~~-----~~~~LSgGerQRv~IAr 152 (402)
T PRK09536 107 -SRFDT---W-------------------------TETDRAAVERAMERTGVAQFADR-----PVTSLSGGERQRVLLAR 152 (402)
T ss_pred -ccccC---C-------------------------CHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHH
Confidence 00000 0 00112346778999999766554 45679999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 158 al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
||+++|++++|||||+|||+.++.++++.|+++++ . +++|++++|+.+++.++||++++|++|++++.|+++++.
T Consensus 153 AL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~-g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 153 ALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-D-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999865 3 456777899999999999999999999999999988754
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-32 Score=302.32 Aligned_cols=189 Identities=24% Similarity=0.297 Sum_probs=154.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDV-HIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++..||.||+.|+....+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 109 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG 109 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC
Confidence 47999999999999999999999987 999999998875432 2357999999863 4556899999998643211
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
.. ..+.+..++.+++.+||.+..+. .+..|||||||||+||
T Consensus 110 ~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgG~~qrv~la 150 (274)
T PRK13647 110 LD----------------------------------KDEVERRVEEALKAVRMWDFRDK-----PPYHLSYGQKKRVAIA 150 (274)
T ss_pred CC----------------------------------HHHHHHHHHHHHHHCCCHHHhcC-----ChhhCCHHHHHHHHHH
Confidence 00 00112235678889999765544 4557999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
|||+.+|++++|||||+|||+.++.++.+.+++++. . +.+|++++|+.+.+.+.||++++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999999998764 3 56677789999999999999999999999999987653
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=297.17 Aligned_cols=206 Identities=22% Similarity=0.263 Sum_probs=161.8
Q ss_pred CcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeEEEEEEE
Q 000867 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITI 751 (1247)
Q Consensus 675 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~i 751 (1247)
...++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+. .+.+|+|.+
T Consensus 23 ~~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i 89 (272)
T PRK14236 23 QTALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL 89 (272)
T ss_pred CcEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEE
Confidence 34689999998763 23599999999999999999999999999999999998542 135899999
Q ss_pred cCccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000867 752 SGYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826 (1247)
Q Consensus 752 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 826 (1247)
+|.+... ...++.++|++|++.+++. |++||+.+....+. ....+..++.++++++.+++.+....... ..
T Consensus 90 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~ 165 (272)
T PRK14236 90 DGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLH-EN 165 (272)
T ss_pred CCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhh-CC
Confidence 9987642 1345678999999988886 99999987653321 11222334567888998888642111111 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 827 ~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 166 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~ 236 (272)
T PRK14236 166 AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDY 236 (272)
T ss_pred cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCE
Confidence 357999999999999999999999999999999999999999999999865 789999999985 34455666
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=328.60 Aligned_cols=102 Identities=19% Similarity=0.285 Sum_probs=86.7
Q ss_pred HHHHhCCccc-ccccccCCccccccccccchhHHHHHHhcCC--eEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEE
Q 000867 123 YLKVLGLEVC-DDTLVGDEMVRGISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAV 199 (1247)
Q Consensus 123 ~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRvsiA~al~~~p--~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~i 199 (1247)
.|+.+||.+. . ++.+.+|||||||||.||++|..+| ++++|||||+|||+..+.++++.|+++.+ .+.+|
T Consensus 472 ~L~~vGL~~l~l-----~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~--~G~TV 544 (943)
T PRK00349 472 FLVDVGLDYLTL-----SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD--LGNTL 544 (943)
T ss_pred HhhccccCCCCC-----CCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh--CCCEE
Confidence 5788888643 3 3556689999999999999999987 99999999999999999999999999854 35567
Q ss_pred EEecCCChhHHhhcccEEEe------cCCcEEEecCcch
Q 000867 200 ISLLQPAPETYDLFDDIILL------SDAQIVYQGPREL 232 (1247)
Q Consensus 200 v~~~~~~~~~~~~~D~v~~l------~~G~v~~~G~~~~ 232 (1247)
++++|+.+++. .+|+|++| ++|++++.|++++
T Consensus 545 IvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e 582 (943)
T PRK00349 545 IVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEE 582 (943)
T ss_pred EEEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHH
Confidence 77899888765 69999999 8999999886654
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=294.79 Aligned_cols=201 Identities=24% Similarity=0.284 Sum_probs=159.4
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCe---EEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~---~~G~i~i~g 753 (1247)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 467888887763 2359999999999999999999999999999999999754322 379999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 824 (1247)
.++.. ..+++.++|++|++.+++.+|+.||+.+...... ....+...+.++++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87642 1335578999999999999999999987643221 1122333455667777777642 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.+.||||||||++|||+|+.+|++|+|||||+|||..++..+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~ 216 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDT 216 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCE
Confidence 357999999999999999999999999999999999999999999999864 799999999986 35555666
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=295.03 Aligned_cols=204 Identities=24% Similarity=0.279 Sum_probs=159.4
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 753 (1247)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+.. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 467888887663 245999999999999999999999999999999999975421 2479999999
Q ss_pred ccCCc----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000867 754 YPKKQ----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829 (1247)
Q Consensus 754 ~~~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 829 (1247)
.++.. ...++.++|++|++.+++ .|+.||+.+...... ....+..++++.++++.+++.+....... .....
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhh-cCccc
Confidence 87631 234567899999998887 899999987643221 11223334567788888887542111111 12357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 830 lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~ 213 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDR 213 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999865 589999999985 45566676
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=293.91 Aligned_cols=204 Identities=20% Similarity=0.248 Sum_probs=158.4
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 753 (1247)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 477899987763 235999999999999999999999999999999999976532 2369999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 828 (1247)
.++.. ...++.++|++|++.+++. |++||+.+....+.. . ..+..++.++++++.+++.+..+... +....
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT-T-AQSRLDEVVEKSLRQAALWDEVKDNL-HKSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC-C-hhhHHHHHHHHHHHHhCCchhhhhHh-hCCcc
Confidence 87532 1345679999999988875 999999886543211 1 12223445677888888754211111 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++. +++|||+++|+++. +-+..|+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~-~~~~~d~ 215 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQ-AARASDW 215 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-HHhhCCE
Confidence 799999999999999999999999999999999999999999999884 58999999999853 3344455
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=297.28 Aligned_cols=204 Identities=23% Similarity=0.288 Sum_probs=162.3
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~i~g 753 (1247)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 588999998874 24699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCc----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000867 754 YPKKQ----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829 (1247)
Q Consensus 754 ~~~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 829 (1247)
.++.. ...++.++|++|++.+++ .|++||+.+..... ...+.++.++.+.++++.+++.+..+.... ...+.
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 134567899999998888 89999998764322 112333444456788899998653221111 12357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 830 lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dr 231 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDR 231 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999865 589999999985 45566676
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=301.64 Aligned_cols=192 Identities=20% Similarity=0.328 Sum_probs=156.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1247)
+++|+|||||||||||++|+|..+|+ +|+|.++|+++.... .++.++|++|++.+++.+||.||+.++...
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 111 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLRE 111 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999886 999999998765321 235699999998888889999999885321
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
.. ..+ . .+.+..++++++.+||.+..+.. +..|||||||||+
T Consensus 112 ~~---~~~------~------------------------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~ 153 (269)
T PRK11831 112 HT---QLP------A------------------------PLLHSTVMMKLEAVGLRGAAKLM-----PSELSGGMARRAA 153 (269)
T ss_pred cc---CCC------H------------------------HHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHH
Confidence 10 000 0 00112345678899997655543 4579999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||||+.+|++++|||||+|||+.++..+.+.++++.+. .+++|++++|+.+++.+.+|++++|++|++++.|+++++.
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999987653 3566777899999999999999999999999999887654
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=293.03 Aligned_cols=197 Identities=26% Similarity=0.405 Sum_probs=156.0
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 68 (220)
T cd03245 2 RIEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDI 68 (220)
T ss_pred eEEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEh
Confidence 3678888876531 124599999999999999999999999999999999998653 479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCCC
Q 000867 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG------LPGE 827 (1247)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g------~~~~ 827 (1247)
.. ...++.++|++|++.+++ .|+.|++.+... ... ++.+.++++.+++.+..+.... ....
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 69 RQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred HHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 32 223457899999998876 699999876421 111 1235677888888776555431 1123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||+++|++.. + +..|+
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~-~-~~~d~ 207 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL-L-DLVDR 207 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH-H-HhCCE
Confidence 579999999999999999999999999999999999999999999998654 899999999863 3 56666
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-32 Score=299.51 Aligned_cols=198 Identities=23% Similarity=0.300 Sum_probs=155.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 106 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG 106 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccc
Confidence 47999999999999999999999886 999999998765321 245799999998889999999999874311
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
.. ..+. ... . ....+....++++++.+||.+..+ +.+..|||||||||+
T Consensus 107 ~~--~~~~---~~~---------~------------~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~ 155 (243)
T TIGR02315 107 YK--PTWR---SLL---------G------------RFSEEDKERALSALERVGLADKAY-----QRADQLSGGQQQRVA 155 (243)
T ss_pred cc--cchh---hhh---------c------------cccHHHHHHHHHHHHHcCcHhhhc-----CCcccCCHHHHHHHH
Confidence 00 0000 000 0 000011223567788899975444 345679999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+.+.++||++++|++|++++.|+++++
T Consensus 156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999999987653 356677789999999999999999999999999987664
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=281.45 Aligned_cols=163 Identities=30% Similarity=0.412 Sum_probs=139.8
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|..+. .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 5677776653 23599999999999999999999999999999999998653 48999999987643
Q ss_pred -----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000867 759 -----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833 (1247)
Q Consensus 759 -----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 833 (1247)
...++.++|++|++.+++.+|++|++.+. ||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 23456799999999888889999987532 8999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 834 qr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+..|+
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 170 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADR 170 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 999999999999999999999999999999999999999998876 899999999985 33344554
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=294.80 Aligned_cols=186 Identities=23% Similarity=0.300 Sum_probs=150.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.+...
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 113 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLL 113 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHH
Confidence 47999999999999999999999887 9999999988754321 2469999999888889999999998643
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
..+. . . .+.++.++++++.+||++..+. .+.+||||||||+
T Consensus 114 ~~~~----~------~------------------------~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgG~~qrl 154 (233)
T PRK11629 114 IGKK----K------P------------------------AEINSRALEMLAAVGLEHRANH-----RPSELSGGERQRV 154 (233)
T ss_pred hcCC----C------H------------------------HHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHH
Confidence 2110 0 0 0111235678899999765543 4557999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCc
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~ 230 (1247)
+||||++.+|++++|||||+|||+.++..+.+.++++.+. ++++|++++|+.+++.. +|++++|++|++++.|+.
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL-QGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999987543 35667778888888766 589999999999988864
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=294.30 Aligned_cols=199 Identities=21% Similarity=0.275 Sum_probs=158.3
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--eEEEEEEEcC
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISG 753 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~--~~~G~i~i~g 753 (1247)
..++++|+++.++ +.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 3588999987752 24999999999999999999999999999999999986531 1579999999
Q ss_pred ccCCcccc-cceEEEeccCCC--CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCCCC
Q 000867 754 YPKKQETF-TRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL---RQSLVGLPGE 827 (1247)
Q Consensus 754 ~~~~~~~~-~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~---~~~~~g~~~~ 827 (1247)
.++..... ++.++|++|++. +.+..|+.+++.+.+.... ... .+++++++++.+++.+. .++.+
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~~----- 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLYP----- 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcCC-----
Confidence 88653322 356899999974 4466899998866433221 111 22567889999999762 34433
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++.. +.+..|+
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~-~~~~~d~ 210 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGV-VARLADD 210 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhCCE
Confidence 479999999999999999999999999999999999999999999998764 8999999999863 3344555
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=297.90 Aligned_cols=199 Identities=24% Similarity=0.294 Sum_probs=160.1
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeEEEEEEEc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 752 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~i~ 752 (1247)
..++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..+. .+.+|+|.++
T Consensus 38 ~~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~ 104 (285)
T PRK14254 38 TVIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFR 104 (285)
T ss_pred ceEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEEC
Confidence 3588999988763 23599999999999999999999999999999999997542 1247999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000867 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVG 823 (1247)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g 823 (1247)
|.++.. ...++.++|++|++.+++. |++||+.+....+. ... ..+++++++++.+++.+ ..+..
T Consensus 105 G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~-- 177 (285)
T PRK14254 105 GKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS-- 177 (285)
T ss_pred CEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC--
Confidence 987532 2345678999999888875 99999987654331 112 23456788999999853 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 824 ~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
...||||||||++|||||+.+|+||+|||||+|||..+...+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 178 ---~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dr 248 (285)
T PRK14254 178 ---GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDK 248 (285)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCE
Confidence 357999999999999999999999999999999999999999999999876 489999999985 34445565
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=302.28 Aligned_cols=190 Identities=21% Similarity=0.311 Sum_probs=154.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDV-HIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++. .++..||+|||.|+....+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG 111 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC
Confidence 47999999999999999999999987 999999998875422 2457999999863 6777899999998643211
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
.. ..+....++++++.+||++..+. .+..||||||||++||
T Consensus 112 ~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 112 IP----------------------------------HEEMKERVNEALELVGMQDFKER-----EPARLSGGQKQRVAIA 152 (279)
T ss_pred CC----------------------------------HHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHHHHHHHHH
Confidence 00 00112235678899999765543 4557999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||+.+|++++|||||+|||+.++..+++.++++.+. .+++|++++|+.+++ ..||++++|++|+++..|+++++.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tilivtH~~~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD-YQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999988653 356677788888887 589999999999999999987764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-32 Score=341.96 Aligned_cols=194 Identities=29% Similarity=0.383 Sum_probs=162.4
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|++++++. +++++|+|+|++|+|||++||+|+||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEE
Confidence 47999999999841 224699999999999999999999999999999999998763 48999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 825 (1247)
+++ ..+++.+|||+|++.+++ -|++||+.++. + .+ ++.++++++..|+.+. .|+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 754 456788999999999886 59999998642 1 22 2346677888777653 35666643
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++ ++|+|+++|+++ ..+.+|+
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~ 653 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADR 653 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCE
Confidence 4689999999999999999999999999999999999999999999876 589999999984 4566777
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=294.80 Aligned_cols=190 Identities=25% Similarity=0.366 Sum_probs=153.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV--PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~--~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... ..+.++|++|++.+++.+|++||+.+.....+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~ 105 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLS 105 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCC
Confidence 47999999999999999999999887 999999998764322 2257999999988888999999998754321100
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
. .+....++++++.+||++..++. +..||||||||++||||
T Consensus 106 ----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 106 ----------R------------------------AEARERIAALLARLGLAERADDK-----VRELNGGHRRRVEIARA 146 (236)
T ss_pred ----------H------------------------HHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHH
Confidence 0 00112356678889997655544 45799999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|+.+|++++|||||+|||+.++..+.+.|+++++. .+.++++++|+.+++.. +|++++|++|++++.|+++++.
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRD-QGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999987643 35567778898888865 9999999999999999887664
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=326.44 Aligned_cols=202 Identities=26% Similarity=0.302 Sum_probs=165.7
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEEC
Confidence 478899988763 24599999999999999999999999999999999998653 479999999876
Q ss_pred Cccc----ccceEEEeccCCCCCCCcCHHHHHHHHhhcc--C-CC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000867 757 KQET----FTRISGYCEQNDIHSPFVTVYESLLYSAWLR--L-PP-EVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1247)
Q Consensus 757 ~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~--~-~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 828 (1247)
.... .++.++|++|++.+++.+||+|++.+..... . .. ..+.++.+++++++++.+||.+..++.++
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA----- 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----
Confidence 4321 2346899999999999999999998753210 0 00 01233345668899999999887777664
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~ 214 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDR 214 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 69999999999999999999999999999999999999999999999877999999999975 34455666
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-31 Score=293.75 Aligned_cols=205 Identities=21% Similarity=0.270 Sum_probs=162.0
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 753 (1247)
.++++|+++.+. +..+|+|+||++++||+++|+|+||||||||+++|+|..++. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 588999998763 135999999999999999999999999999999999976531 1369999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 828 (1247)
.++.. ...++.++|++|+..+++ .|+.||+.+...... .....+.++++.++++.+++.+..+.... ....
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIH-KSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcc
Confidence 87531 233566899999988888 899999987643221 11223334567889999998542221111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++|||+|+.+|++++|||||+|||..+...+.+.|+++++ +|+|||+++|++. ++.+..|+
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~ 220 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDF 220 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCE
Confidence 7999999999999999999999999999999999999999999999764 4899999999985 46667777
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-32 Score=305.80 Aligned_cols=196 Identities=25% Similarity=0.372 Sum_probs=163.2
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|++++++.+ ..++|+|+|+++++||++||+|+||||||||++.|+|..++ .+|+|..||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~--~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP--QQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC--CCCeeeECCcCh
Confidence 78999999998632 34699999999999999999999999999999999997653 489999999886
Q ss_pred Cc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCCC
Q 000867 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS-------LVGLPG 826 (1247)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~g~~~ 826 (1247)
.. ...++.++++.|...++. -|+|+||..+. ++.+ ++.+.++++.+||++.... .+| ++
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lg-e~ 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PDAS----DEELWAALQQVGLEKLLESAPDGLNTWLG-EG 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CCCC----HHHHHHHHHHcCHHHHHHhChhhhhchhc-cC
Confidence 43 335667899999887765 59999997652 2333 3447889999999875433 454 35
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 827 ~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++.||||||||++|||+|++|.++++|||||.|||+.|.+++++.+.+.+ +|+|+|++||+... .+.||+
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~--le~~dr 541 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRG--LERMDR 541 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEeccccc--HhhcCE
Confidence 67899999999999999999999999999999999999999999998876 48999999999753 456776
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-31 Score=293.63 Aligned_cols=200 Identities=25% Similarity=0.316 Sum_probs=159.0
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~i~g 753 (1247)
.++++|+++.+. .+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478999988763 2359999999999999999999999999999999999764 11 2579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 824 (1247)
.+... ...++.++|++|++.+++ .|++||+.+....+. ....+..++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87632 123567899999988886 799999987643221 1122333456778899999853 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
...||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++. +++|||+++|++. .+.+..|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~ 215 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQ-QAGRISDQ 215 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHH-HHHhhcCE
Confidence 35799999999999999999999999999999999999999999999985 4689999999986 34455566
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=333.32 Aligned_cols=196 Identities=21% Similarity=0.319 Sum_probs=163.8
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|+++.++. ++++|+|+|++++|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEE
Confidence 46999999998741 23599999999999999999999999999999999998764 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCC
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR-------QSLVGLP 825 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~ 825 (1247)
+++ ..+++.++||+|++.+++. |++||+.++. +.+ +++++++++.+|+.+.. |+.+|.
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e- 472 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGE- 472 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccC-
Confidence 753 4567889999999999985 9999998752 122 23467788888876533 555654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhcC
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEG 900 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 900 (1247)
.+.+||||||||++|||||+++|+||+||||||+||+++++.+.+.|+++.+ ++|+|+++|++ +....+|+.
T Consensus 473 ~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~i 544 (592)
T PRK10790 473 QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTI 544 (592)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEE
Confidence 3457999999999999999999999999999999999999999999998754 69999999999 445667773
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=298.66 Aligned_cols=191 Identities=23% Similarity=0.313 Sum_probs=154.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-----------cccceEEEeccccccCCCCCHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-----------VPQRTAAYISQHDVHIGEMTVRETLA 69 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-----------~~~~~i~yv~Q~~~~~~~lTv~e~l~ 69 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+||+||+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 107 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENII 107 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHH
Confidence 47999999999999999999999886 99999999876421 12457999999988888899999998
Q ss_pred HHHhccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccc
Q 000867 70 FSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQ 149 (1247)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 149 (1247)
++..... +. . ..+....++++++.+||.+..++ .+..|||||
T Consensus 108 ~~~~~~~-~~--~------------------------------~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~Gq 149 (250)
T PRK11264 108 EGPVIVK-GE--P------------------------------KEEATARARELLAKVGLAGKETS-----YPRRLSGGQ 149 (250)
T ss_pred HHHHHhc-CC--C------------------------------HHHHHHHHHHHHHHcCCcchhhC-----ChhhCChHH
Confidence 7532100 00 0 00112235667888999765443 456799999
Q ss_pred cchhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecC
Q 000867 150 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGP 229 (1247)
Q Consensus 150 rqRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~ 229 (1247)
||||+|||||+.+|++++|||||+|||+.++..+.+.++++.+ . +.+|++++|+.+++.+++|++++|++|++++.|+
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-E-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998754 2 4567778999999999999999999999999998
Q ss_pred cchHH
Q 000867 230 RELVL 234 (1247)
Q Consensus 230 ~~~~~ 234 (1247)
.+++.
T Consensus 228 ~~~~~ 232 (250)
T PRK11264 228 AKALF 232 (250)
T ss_pred HHHHh
Confidence 77653
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=296.43 Aligned_cols=195 Identities=21% Similarity=0.308 Sum_probs=158.1
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++. +...+|+|+|++|++||+++|+||||||||||+++|+|..+ .+|+|.+||.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4789999988741 12359999999999999999999999999999999999875 269999999886
Q ss_pred Cc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------CCC
Q 000867 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL------PGE 827 (1247)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~------~~~ 827 (1247)
.. ...++.++|++|++.+++ .|++||+.... ... ++.+.++++.+||.+..+...+. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 234567999999999987 49999995321 111 23467788889997665554431 234
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
..||||||||++|||||+.+|+||+|||||+|||+.+...+++.|++.. +++|||+++|++. .+. ..|+
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dr 205 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQR 205 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCE
Confidence 5799999999999999999999999999999999999999999999874 5899999999984 343 4676
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=323.91 Aligned_cols=203 Identities=23% Similarity=0.339 Sum_probs=164.3
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 56788887763 24599999999999999999999999999999999997653224799999998764
Q ss_pred ccc----ccceEEEeccCCCCCCCcCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCC
Q 000867 758 QET----FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-EVDSETQKMFIEEIMELVELNPLR-QSLVGLPGESGLS 831 (1247)
Q Consensus 758 ~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~l~l~~~~-~~~~g~~~~~~lS 831 (1247)
... .++.+||++|++.+++.+||+|++.+........ ....+..+++++++++.+++.+.. +..+ +.||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCC
Confidence 321 2356899999998899999999998764322111 122333455688999999997654 3434 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||||+||+||+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~ 210 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDT 210 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998878999999999985 34455676
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=280.28 Aligned_cols=178 Identities=20% Similarity=0.296 Sum_probs=138.3
Q ss_pred CCcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcC
Q 000867 674 EPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 753 (1247)
Q Consensus 674 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g 753 (1247)
.|..+-++|++|.++ +.++++++++|-|.--..++|+||||.||||||+.|.|...+ ..|+..-|
T Consensus 583 ~PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKn- 647 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKN- 647 (807)
T ss_pred CCCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhcc-
Confidence 345677888888764 346799999999999999999999999999999999998763 35554322
Q ss_pred ccCCcccccceEEEeccCC--CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000867 754 YPKKQETFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 754 ~~~~~~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
.+-.+|+..|.. .+-..-|+-|.|.-.. .+ +.+. ....|-.+||...++++- .+.||
T Consensus 648 -------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F--Nl----pyq~----ARK~LG~fGL~sHAHTik----ikdLS 706 (807)
T KOG0066|consen 648 -------HRLRIGWFDQHANEALNGEETPVEYLQRKF--NL----PYQE----ARKQLGTFGLASHAHTIK----IKDLS 706 (807)
T ss_pred -------ceeeeechhhhhHHhhccccCHHHHHHHhc--CC----ChHH----HHHHhhhhhhhhccceEe----eeecC
Confidence 123578877753 2334567777764321 12 2221 345788899998888873 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCC
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1247)
||||-||++|..-++.|+||||||||++||.++...+.+.|++. ...||+++|+.+
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR 762 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER 762 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc
Confidence 99999999999999999999999999999999999999999875 357999999875
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=293.81 Aligned_cols=194 Identities=23% Similarity=0.255 Sum_probs=155.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCC----CCceeeEEEECCccCCCCcc-cceEEEeccccc--cCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDS----KLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDV--HIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~----~~~~~G~v~~~g~~~~~~~~-~~~i~yv~Q~~~--~~~~lTv~e~l~f~~~ 73 (1247)
+++|+||||||||||+++|+|..+| + +|+|.++|+++..... ++.++|++|++. +.+.+|++||+.+...
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 90 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLR 90 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHH
Confidence 4799999999999999999999987 5 8999999988754332 257999999974 5567899999987543
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
..+.. . .+.+..++++++.+||++. +...++.+..|||||||||
T Consensus 91 ~~~~~---------~-------------------------~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~LS~G~~qrv 134 (230)
T TIGR02770 91 SLGKL---------S-------------------------KQARALILEALEAVGLPDP--EEVLKKYPFQLSGGMLQRV 134 (230)
T ss_pred HcCcc---------H-------------------------HHHHHHHHHHHHHcCCCch--HHHHhCChhhcCHHHHHHH
Confidence 21100 0 0112235678899999742 1122445668999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+||||++.+|++++|||||+|||+.++..+.+.++++.+. .+++|++++|+.+++...+|++++|++|+++..|+++++
T Consensus 135 ~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 213 (230)
T TIGR02770 135 MIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL-FGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213 (230)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999987543 356677789999999999999999999999999988776
Q ss_pred H
Q 000867 234 L 234 (1247)
Q Consensus 234 ~ 234 (1247)
.
T Consensus 214 ~ 214 (230)
T TIGR02770 214 F 214 (230)
T ss_pred H
Confidence 4
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=324.02 Aligned_cols=202 Identities=28% Similarity=0.345 Sum_probs=166.0
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 478899988763 23599999999999999999999999999999999998653 479999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 757 KQE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 757 ~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
... .+++.+||++|++.+++.+||+||+.+....+........+.+++++++++.+|+.+..+..+ ..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 421 234568999999989999999999987532111111123344566889999999987666654 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||||++|||+|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~ 209 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDA 209 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998877999999999986 34455666
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=296.15 Aligned_cols=200 Identities=22% Similarity=0.270 Sum_probs=158.7
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-CeEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~i~g 753 (1247)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999998763 2359999999999999999999999999999999999642 1 13579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 824 (1247)
.++.. ...++.++|++|++.+++. |++||+.+...... .......++.+.++++.+++.+ ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87642 1235678999999988875 99999987643221 1112233455777888888852 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~ 232 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDR 232 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCE
Confidence 357999999999999999999999999999999999999999999999864 689999999985 35556666
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-31 Score=297.51 Aligned_cols=200 Identities=21% Similarity=0.275 Sum_probs=158.7
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-CeEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~i~g 753 (1247)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 588999988763 1359999999999999999999999999999999999632 1 02479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN----PLRQSLVGL 824 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~g~ 824 (1247)
.++.. ...++.++|++|++.+++. ||+||+.+....+.. .+....++++.++++.+|+. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1245679999999988875 999999886533211 12233345677888888874 223333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
...||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|++.. +.+..|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~-~~~~~d~ 250 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQ-ASRVSDY 250 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH-HHHhCCE
Confidence 357999999999999999999999999999999999999999999998864 6899999999863 4455666
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-31 Score=293.39 Aligned_cols=204 Identities=25% Similarity=0.277 Sum_probs=159.4
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 753 (1247)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..... ..+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478899988763 235999999999999999999999999999999999964311 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 828 (1247)
.++.. ...++.++|++|++.+++. ||+||+.+....+.. ......++.+.++++.+++.+...... +...+
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRL-HDSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHh-hcChh
Confidence 87642 2335678999999988874 999999987543321 122333456778888888753211111 11235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++.. +.+..|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~-~~~~~d~ 217 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQ-AARVSDY 217 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHH-HHhhCCE
Confidence 7999999999999999999999999999999999999999999999865 6899999999853 4455565
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=293.66 Aligned_cols=189 Identities=23% Similarity=0.274 Sum_probs=152.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|+++..... ..+|++|++.+++.+||+||+.++..... . .
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~-~-~ 85 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVL-P-D 85 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhcc-c-C
Confidence 47999999999999999999999887 9999999988754322 35899999988998999999988532100 0 0
Q ss_pred cchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHHh
Q 000867 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1247)
.. ..+.+..++++++.+||++..++. +..||||||||++|||||+
T Consensus 86 ------~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~ 130 (230)
T TIGR01184 86 ------LS------------------------KSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALS 130 (230)
T ss_pred ------CC------------------------HHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHH
Confidence 00 001122356678889997655443 4579999999999999999
Q ss_pred cCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcch
Q 000867 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPREL 232 (1247)
Q Consensus 161 ~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~ 232 (1247)
.+|++++|||||+|||+.++..+.+.++++.+. .+.+|++++|+.+++.+.+|++++|++|+++..|+..+
T Consensus 131 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 131 IRPKVLLLDEPFGALDALTRGNLQEELMQIWEE-HRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCcee
Confidence 999999999999999999999999999987653 35567778999999999999999999999999886544
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=290.57 Aligned_cols=185 Identities=23% Similarity=0.348 Sum_probs=150.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++.....
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--- 99 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--- 99 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc---
Confidence 47999999999999999999999887 999999998775422 24679999999988888999999987532100
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
. .. .+.+..++++++.+||.+..++ .+..||||||||++||||+
T Consensus 100 --~----~~-------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~ia~al 143 (211)
T cd03298 100 --K----LT-------------------------AEDRQAIEVALARVGLAGLEKR-----LPGELSGGERQRVALARVL 143 (211)
T ss_pred --C----cc-------------------------HHHHHHHHHHHHHcCCHHHHhC-----CcccCCHHHHHHHHHHHHH
Confidence 0 00 0011235667888999765554 3457999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEec
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G 228 (1247)
+.+|++++|||||+|||+.++..+.+.++++.+. .+.+|++++|+..++.+++|++++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE-TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999987643 3566777899999999999999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=294.58 Aligned_cols=200 Identities=24% Similarity=0.259 Sum_probs=158.2
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc-
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 755 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~- 755 (1247)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccc
Confidence 478999988763 23599999999999999999999999999999999998653 47999999987
Q ss_pred ----CCcc---c----ccceEEEeccCCC--CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 000867 756 ----KKQE---T----FTRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSL 821 (1247)
Q Consensus 756 ----~~~~---~----~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~ 821 (1247)
+... . .++.++|++|+.. +.+.+|+.|++.+..... . .......++.+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-G-ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346899999974 567789999987643211 1 1112233456788999999964 44544
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 822 ~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+ ..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++.++ |.|||+++|++.. +.+..|+
T Consensus 149 ~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~-~~~~~d~ 221 (258)
T PRK11701 149 P-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLAHR 221 (258)
T ss_pred C-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhcCE
Confidence 3 479999999999999999999999999999999999999999999998764 8999999999853 3334555
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=296.49 Aligned_cols=190 Identities=19% Similarity=0.314 Sum_probs=155.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHhc-
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSARC- 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-----~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~- 74 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 105 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV 105 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh
Confidence 47999999999999999999999887 99999999886532 1245799999998888889999999875321
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
.+. + ..+....++++++.+||++..+. .+..||||||||++
T Consensus 106 ~~~----~------------------------------~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~ 146 (240)
T PRK09493 106 RGA----S------------------------------KEEAEKQARELLAKVGLAERAHH-----YPSELSGGQQQRVA 146 (240)
T ss_pred cCC----C------------------------------HHHHHHHHHHHHHHcCChHHHhc-----ChhhcCHHHHHHHH
Confidence 000 0 00111235678888999755443 45579999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
||||++.+|++++|||||+|||+.++..+.+.++++.+ . +++|++++|+.+++...||++++|++|++++.|+.+++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-E-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999999999999998754 3 456777899999999999999999999999999877654
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-31 Score=292.64 Aligned_cols=203 Identities=18% Similarity=0.213 Sum_probs=160.7
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--C-eEEEEEEEc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITIS 752 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~--~-~~~G~i~i~ 752 (1247)
..+..+++++.+. ++.+|+|+|++++|||+++|+|+||||||||+++|+|..++ + +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 4567777776542 34699999999999999999999999999999999997642 1 257999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000867 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827 (1247)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 827 (1247)
|.++.. ..+++.++|++|++.++ .+|++||+.+....+. . ....++.++++++.+++.+..+...+ ...
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCc
Confidence 987632 13456789999998877 5999999988754331 1 12234567889999998643222221 224
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|||+++|++. ++.+..|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~ 217 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADT 217 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCE
Confidence 5799999999999999999999999999999999999999999999985 4799999999986 35566676
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=289.74 Aligned_cols=183 Identities=27% Similarity=0.392 Sum_probs=150.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-------cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|++||+.+...
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 101 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLK 101 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHh
Confidence 47999999999999999999999887 99999999876421 124579999999988889999999987532
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
.. . . ...+..++++++.+||++..+ +.+..||||||||+
T Consensus 102 ~~------~------~------------------------~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv 140 (214)
T cd03297 102 RK------R------N------------------------REDRISVDELLDLLGLDHLLN-----RYPAQLSGGEKQRV 140 (214)
T ss_pred hC------C------H------------------------HHHHHHHHHHHHHcCCHhHhh-----cCcccCCHHHHHHH
Confidence 10 0 0 001123456788899875444 34567999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEec
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G 228 (1247)
+||||++.+|++++|||||+|||+.++..+.+.++++++. .+++|++++|+.+++...+|++++|++|++++.|
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 141 ALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN-LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999987653 2556777899999999999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=303.84 Aligned_cols=190 Identities=18% Similarity=0.250 Sum_probs=154.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-------cccceEEEecccc--ccCCCCCHHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHD--VHIGEMTVRETLAFS 71 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~i~yv~Q~~--~~~~~lTv~e~l~f~ 71 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++ .+++ .||.||+.|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~ 110 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFG 110 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhh
Confidence 47999999999999999999999987 99999999887431 1246799999985 3444 5999999986
Q ss_pred HhccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCc-ccccccccCCcccccccccc
Q 000867 72 ARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE-VCDDTLVGDEMVRGISGGQK 150 (1247)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqr 150 (1247)
....+.. ..+....++++++.+||. +..+ +.+..||||||
T Consensus 111 ~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~LSgGq~ 151 (286)
T PRK13646 111 PKNFKMN----------------------------------LDEVKNYAHRLLMDLGFSRDVMS-----QSPFQMSGGQM 151 (286)
T ss_pred HHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhhh-----CCcccCCHHHH
Confidence 4321100 001122356788899996 3444 44568999999
Q ss_pred chhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCc
Q 000867 151 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1247)
Q Consensus 151 qRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~ 230 (1247)
|||+|||||+.+|++++|||||+|||+.++.++.+.++++.+. .+++|++++|+.+++.+.+|+|++|++|++++.|++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999987543 456777799999999999999999999999999998
Q ss_pred chHH
Q 000867 231 ELVL 234 (1247)
Q Consensus 231 ~~~~ 234 (1247)
+++.
T Consensus 231 ~~~~ 234 (286)
T PRK13646 231 KELF 234 (286)
T ss_pred HHHH
Confidence 7764
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-31 Score=293.08 Aligned_cols=198 Identities=24% Similarity=0.310 Sum_probs=157.1
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++ ++.+|+|+|++++|||++||+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 488999987763 2359999999999999999999999999999999999621113579999999876
Q ss_pred Ccc---cccc-eEEEeccCCCCCCCcCHHHHHHHHhhccCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000867 757 KQE---TFTR-ISGYCEQNDIHSPFVTVYESLLYSAWLRLP----PEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGE 827 (1247)
Q Consensus 757 ~~~---~~~~-~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 827 (1247)
... ..++ .++|++|++.+++.+|+.|++.+....... ......+..+++.++++.+|+. +..+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 2222 378999999999999999998765432110 1112223345678889999996 34454432
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCCh
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 891 (1247)
..||||||||++||+||+.+|++++|||||+|||..+...+.+.|+++.++|+|||+++|++..
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~ 213 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL 213 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 2499999999999999999999999999999999999999999999987778999999999764
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=306.05 Aligned_cols=198 Identities=20% Similarity=0.209 Sum_probs=160.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc-------cceEEEecccc--ccCCCCCHHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHD--VHIGEMTVRETLAFS 71 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~i~yv~Q~~--~~~~~lTv~e~l~f~ 71 (1247)
+++|+|+||||||||+++|+|+++|....+|+|.++|+++..... ++.++||+|++ .+.+.+|+.+++.+.
T Consensus 44 ~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~ 123 (330)
T PRK09473 44 TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEV 123 (330)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHH
Confidence 479999999999999999999998742348999999998754321 14799999997 678899999999875
Q ss_pred HhccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccc
Q 000867 72 ARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKK 151 (1247)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 151 (1247)
...... . ...+....+.++++.+||++..+. + ++.+.+|||||||
T Consensus 124 ~~~~~~---------~------------------------~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG~~Q 168 (330)
T PRK09473 124 LMLHKG---------M------------------------SKAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGGMRQ 168 (330)
T ss_pred HHHhcC---------C------------------------CHHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHHHHH
Confidence 432110 0 001112345677889999754322 2 4677899999999
Q ss_pred hhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcc
Q 000867 152 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1247)
Q Consensus 152 RvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~ 231 (1247)
||+|||||+.+|+++++||||+|||+.++.++++.|+++.+. .++++++++|+...+.+++|+|++|++|++++.|+.+
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~ 247 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNAR 247 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998653 3667778999999999999999999999999999988
Q ss_pred hHH
Q 000867 232 LVL 234 (1247)
Q Consensus 232 ~~~ 234 (1247)
++.
T Consensus 248 ~i~ 250 (330)
T PRK09473 248 DVF 250 (330)
T ss_pred HHH
Confidence 875
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=287.95 Aligned_cols=179 Identities=27% Similarity=0.340 Sum_probs=145.5
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCcCH
Q 000867 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTV 780 (1247)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv 780 (1247)
+++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCcH
Confidence 34679999999999999999999999999999999999865 348999999976431 1112334567999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000867 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860 (1247)
Q Consensus 781 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgL 860 (1247)
+||+.+....+ ..+.+..+++++++++.+++.+..++.+ +.||||||||++|||+|+.+|++++|||||+||
T Consensus 102 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99998765432 1223344456788999999988777765 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 861 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 861 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|+.++..+.+.|+++.++|+|||+++|++.. +-+..|+
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~ 211 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPSS-IKRLCDR 211 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCE
Confidence 9999999999999987778999999999852 3334454
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=296.72 Aligned_cols=194 Identities=25% Similarity=0.392 Sum_probs=147.2
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++. .++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehHh
Confidence 56787776531 124599999999999999999999999999999999998653 47999999987532
Q ss_pred ---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCCC
Q 000867 759 ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQK-----MFIEEIMELV--ELNPLRQSLVGLPGES 828 (1247)
Q Consensus 759 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--~l~~~~~~~~g~~~~~ 828 (1247)
...++.++|++|++.+++ .||+||+.+... ....+... ...+++++.+ ++.+..+.. .+
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GA 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CC
Confidence 234567899999987765 699999976421 11111111 0112333333 333333332 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++|||||+.+|++++|||||+|||+.+...+.+.|++++ +|+|||+++|++.. + +..|+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~-~-~~~d~ 205 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLST-V-KNADR 205 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-HhCCE
Confidence 799999999999999999999999999999999999999999999986 48999999999964 3 34565
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-32 Score=335.18 Aligned_cols=197 Identities=30% Similarity=0.464 Sum_probs=161.8
Q ss_pred CcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCc
Q 000867 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1247)
Q Consensus 675 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 754 (1247)
...++|+|+++.++. ++++|+|+|++++|||++||+||||||||||++.|.|..++ .+|+|.+||.
T Consensus 326 ~~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~ 391 (567)
T COG1132 326 IGSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGI 391 (567)
T ss_pred CCeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCE
Confidence 356999999999852 35699999999999999999999999999999999998763 4899999999
Q ss_pred cCCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccC
Q 000867 755 PKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL-------NPLRQSLVGL 824 (1247)
Q Consensus 755 ~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l-------~~~~~~~~g~ 824 (1247)
+++. ..+++.++||+|++.++. -|++||+.++. + +.++++ ++++++..++ .+-.|+.+|
T Consensus 392 dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~----~-~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vg- 460 (567)
T COG1132 392 DIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR----P-DATDEE----IEEALKLANAHEFIANLPDGYDTIVG- 460 (567)
T ss_pred ehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC----C-CCCHHH----HHHHHHHhChHHHHHhCcccccceec-
Confidence 8754 456788999999999998 79999998763 1 223333 3444443332 234688888
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+++..||||||||++||||++++|+||+||||||+||+++...+++.++++. +++|+|+++|+++. ....|+
T Consensus 461 e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i~~aD~ 532 (567)
T COG1132 461 ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNADR 532 (567)
T ss_pred CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--HHhCCE
Confidence 4456899999999999999999999999999999999999999999999776 57899999999953 233666
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=322.88 Aligned_cols=195 Identities=22% Similarity=0.314 Sum_probs=164.7
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488999998763 23599999999999999999999999999999999998653 479999999876
Q ss_pred Ccc---c-ccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000867 757 KQE---T-FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832 (1247)
Q Consensus 757 ~~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 832 (1247)
... . .++.+||++|++.+++.+||+|++.+... . ....+++++++++.+||.+..+..++ .|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~-----~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--K-----RQASMQKMKQLLAALGCQLDLDSSAG-----SLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--c-----chHHHHHHHHHHHHcCCCccccCChh-----hCCH
Confidence 431 1 22458999999999999999999987531 1 12334567889999999887777654 6999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 833 Gqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++.. +.+..|+
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~ 209 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE-IRQLADR 209 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCE
Confidence 99999999999999999999999999999999999999999988779999999999863 4456676
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=331.80 Aligned_cols=199 Identities=24% Similarity=0.291 Sum_probs=163.8
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|++|+++. +.+++|+|+|++|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEE
Confidence 46999999998741 124699999999999999999999999999999999998763 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-------LRQSLVGLP 825 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~ 825 (1247)
.++ ..+++.++|++|++.+++ -|++||+.++. +.+.+. ++++++++..|+.+ -.|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 654 346778999999999887 69999997642 212222 34666777776543 246677653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhcC
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEG 900 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 900 (1247)
++.||||||||++|||||+++|+||+||||||+||++++..+.+.|+++. +++|+|+++|+++ ..+.+|+.
T Consensus 478 -g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~I 548 (582)
T PRK11176 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEI 548 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEE
Confidence 46799999999999999999999999999999999999999999999874 4799999999994 56778873
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=300.06 Aligned_cols=190 Identities=25% Similarity=0.341 Sum_probs=155.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDV-HIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|+++.... .++.++|++|++. .++..||.|||.++....+
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~ 111 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG 111 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC
Confidence 47999999999999999999999987 999999999875432 2457999999863 6777899999988643211
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
.. ..+.++.++++++.+||.+..++. +..|||||||||+||
T Consensus 112 ~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qrv~la 152 (279)
T PRK13635 112 VP----------------------------------REEMVERVDQALRQVGMEDFLNRE-----PHRLSGGQKQRVAIA 152 (279)
T ss_pred CC----------------------------------HHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHH
Confidence 00 001122356788889997655544 457999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++. .+|++++|++|++++.|+.+++.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ-KGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999987653 3567777888888876 59999999999999999987765
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=279.21 Aligned_cols=152 Identities=26% Similarity=0.428 Sum_probs=132.4
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCC
Q 000867 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFTRISGYCEQND---IHSPF 777 (1247)
Q Consensus 705 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 777 (1247)
+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|+. .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP--ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 89999999999999999999999999999999998663 479999999876432 2356789999984 57788
Q ss_pred cCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000867 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 857 (1247)
Q Consensus 778 ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpt 857 (1247)
+|++||+.+... ||||||||++|||||+.+|++++|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999875320 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 858 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 858 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+|||+.++..+.+.|+++.++|+|+|+++|+++ ++-+..|+
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~ 173 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDR 173 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999998767899999999974 45455555
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=291.71 Aligned_cols=200 Identities=26% Similarity=0.339 Sum_probs=157.7
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~i~g 753 (1247)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478999988763 2359999999999999999999999999999999999643 11 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGL 824 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 824 (1247)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87632 234567999999988888 6999999876543211 112222345667788887742 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||+++|++. .+.+..|+
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~ 216 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDK 216 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCE
Confidence 357999999999999999999999999999999999999999999999865 589999999985 35555666
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=290.18 Aligned_cols=179 Identities=26% Similarity=0.367 Sum_probs=146.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV 106 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHH
Confidence 47999999999999999999999886 999999998875421 245799999999888889999999986432
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
.+. . .+..+..++++++.+||.+..++ .+..|||||||||+
T Consensus 107 ~~~----~------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~ 147 (214)
T TIGR02673 107 RGK----K------------------------------EREIQRRVGAALRQVGLEHKADA-----FPEQLSGGEQQRVA 147 (214)
T ss_pred cCC----C------------------------------HHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHH
Confidence 210 0 00011235667888998754443 34579999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCc
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQ 223 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~ 223 (1247)
|||||+.+|++++|||||+|||+.++..+.+.++++.+ . +.+|++++|+.+++..+||++++|++|+
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-R-GTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999998754 3 4567778999999999999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=290.45 Aligned_cols=180 Identities=24% Similarity=0.355 Sum_probs=147.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++||+.++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~ 105 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV 105 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHH
Confidence 47999999999999999999999887 999999998775421 245799999999899999999999886432
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
.+.. .++....++++++.+||++..++ .+.+||||||||++
T Consensus 106 ~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~ 146 (214)
T cd03292 106 TGVP----------------------------------PREIRKRVPAALELVGLSHKHRA-----LPAELSGGEQQRVA 146 (214)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHcCCHHHhhC-----ChhhcCHHHHHHHH
Confidence 2100 00011234667888898765544 34579999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcE
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQI 224 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v 224 (1247)
|||||+.+|++++|||||+|||+.++..+.+.++++.+ . ++++++++|+.+.+.+++|++++|++|++
T Consensus 147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-A-GTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999998754 3 55677789999999999999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=301.68 Aligned_cols=190 Identities=23% Similarity=0.319 Sum_probs=153.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-------cccceEEEeccccc-cCCCCCHHHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHDV-HIGEMTVRETLAFSA 72 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~i~yv~Q~~~-~~~~lTv~e~l~f~~ 72 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++. .+..+||+||+.|+.
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 111 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGP 111 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHH
Confidence 47999999999999999999999987 99999999876431 12357999999862 333679999998864
Q ss_pred hccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCc-ccccccccCCccccccccccc
Q 000867 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE-VCDDTLVGDEMVRGISGGQKK 151 (1247)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrq 151 (1247)
...... .++....++++++.+||. +..+ +.++.|||||||
T Consensus 112 ~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~LSgGq~q 152 (287)
T PRK13641 112 KNFGFS----------------------------------EDEAKEKALKWLKKVGLSEDLIS-----KSPFELSGGQMR 152 (287)
T ss_pred HHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhHhh-----CCcccCCHHHHH
Confidence 321100 001122356788999995 3333 445679999999
Q ss_pred hhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcc
Q 000867 152 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1247)
Q Consensus 152 RvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~ 231 (1247)
|++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .+++|++++|+.+.+.+.||++++|++|++++.|+++
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999998743 3667777999999999999999999999999999887
Q ss_pred hHH
Q 000867 232 LVL 234 (1247)
Q Consensus 232 ~~~ 234 (1247)
++.
T Consensus 231 ~~~ 233 (287)
T PRK13641 231 EIF 233 (287)
T ss_pred HHh
Confidence 754
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-31 Score=293.70 Aligned_cols=208 Identities=25% Similarity=0.301 Sum_probs=161.7
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.+.... ..+ ...++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~---~~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---ccc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 67888887763100 000 0012569999999999999999999999999999999999765 35899999998764
Q ss_pred cc------cccceEEEeccCC--CCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000867 758 QE------TFTRISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-PLRQSLVGLPGES 828 (1247)
Q Consensus 758 ~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 828 (1247)
.. ..++.++|++|+. .+.+..|+.|++.+..... .........+.++++++.+|+. +..+..+ +
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP-----P 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----c
Confidence 31 2356799999997 3567799999987643211 1123344455688999999996 4555543 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++|||+|+.+|++|+|||||+|||..+...+.+.|+++.++ |+|||+++|++. .+-+..|+
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~ 221 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQR 221 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCE
Confidence 69999999999999999999999999999999999999999999998764 899999999985 34445565
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=330.54 Aligned_cols=197 Identities=27% Similarity=0.438 Sum_probs=164.0
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|+++.++. +++.+|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 57999999998741 124699999999999999999999999999999999998763 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc------cccccCCC
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR------QSLVGLPG 826 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~------~~~~g~~~ 826 (1247)
+.+ ..+++.++||+|++.+++ -|++||+.++. + +. .++.++++++..++.+.. |+.+|. +
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge-~ 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGE-G 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-cc----CHHHHHHHHHHcCCHHHHcCccccCchhcC-C
Confidence 654 356778999999998886 59999997752 1 22 234477888888887653 455654 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 827 ~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+..||||||||++|||||+++|++|+||||||+||++++..+.+.|++.. +++|+|+++|+++. ...+|+
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~ 542 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDR 542 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCE
Confidence 46799999999999999999999999999999999999999999999875 58999999999963 345776
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=294.73 Aligned_cols=191 Identities=19% Similarity=0.326 Sum_probs=155.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+..+...
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 107 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD 107 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc
Confidence 47999999999999999999999887 999999998875422 23579999999888888999999987532210
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
. .+ ..+.+..++++++.+||.+..+ +.++.|||||||||+||
T Consensus 108 ~---~~------------------------------~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 108 D---LS------------------------------AEQREDRANELMEEFHIEHLRD-----SMGQSLSGGERRRVEIA 149 (241)
T ss_pred c---cC------------------------------HHHHHHHHHHHHHHcCCHHHhh-----cchhhCCHHHHHHHHHH
Confidence 0 00 0011223567788889875433 44568999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||+.+|++++|||||+|||+.++..+.+.++++.+ .+.++++++|+.+++.+.+|++++|++|++++.|+++++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD--SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 999999999999999999999999999999988753 3556777889989999999999999999999999887653
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=300.10 Aligned_cols=191 Identities=25% Similarity=0.324 Sum_probs=155.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCC--C---cccceEEEeccccc-cCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE--F---VPQRTAAYISQHDV-HIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~--~---~~~~~i~yv~Q~~~-~~~~lTv~e~l~f~~~~ 74 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+...||+||+.++...
T Consensus 34 ~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 110 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN 110 (283)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHH
Confidence 47999999999999999999999987 9999999988741 1 12467999999863 34567999999886432
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
.+.. ..+....++++++.+||.+..+ +.++.||||||||++
T Consensus 111 ~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 111 LKLP----------------------------------EDEVRKRVDNALKRTGIEHLKD-----KPTHCLSFGQKKRVA 151 (283)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHCCChhhhh-----CCcccCCHHHHHHHH
Confidence 1100 0011223567889999976544 455679999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||||+.+|++++|||||+|||+.++..+.+.++++.+. .+++|++++|+.+++..+||++++|++|++++.|+.+++.
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE-LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988653 3566777899999999999999999999999999988765
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=291.03 Aligned_cols=197 Identities=28% Similarity=0.331 Sum_probs=152.5
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56788887763 23599999999999999999999999999999999997421135799999998764
Q ss_pred cc---c-ccceEEEeccCCCCCCCcCHHHHHHHHhh-ccC--CCC-CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000867 758 QE---T-FTRISGYCEQNDIHSPFVTVYESLLYSAW-LRL--PPE-VDSETQKMFIEEIMELVELN-PLRQSLVGLPGES 828 (1247)
Q Consensus 758 ~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-~~~--~~~-~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 828 (1247)
.. . .++.++|++|++.+++.+|+.+++.+... ++. ... ......++.++++++.+++. +..+..+. +
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----C
Confidence 21 1 22458999999988888887776643211 110 000 11122345677888999984 34444331 3
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCCh
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 891 (1247)
.||||||||++|||||+.+|++|+|||||+|||..+...+.+.|+++.++|+|||+++|++..
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~ 207 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 699999999999999999999999999999999999999999999987778999999999763
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=329.94 Aligned_cols=197 Identities=29% Similarity=0.457 Sum_probs=162.4
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|++++++. .++++|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 319 ~~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~I~~~g~~ 385 (529)
T TIGR02857 319 PSLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP--TEGSIAVNGVP 385 (529)
T ss_pred CeEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 46999999998741 124699999999999999999999999999999999998763 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 825 (1247)
+.+ ..+++.++||+|++.+++ .|++||+.++. + +.+ ++.++++++..++.+. .|+.+|.
T Consensus 386 i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e- 454 (529)
T TIGR02857 386 LADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR----P-DAS----DAEIRRALERAGLDEFVAALPQGLDTLIGE- 454 (529)
T ss_pred hhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC----C-CCC----HHHHHHHHHHcCcHHHHHhCcccccchhcc-
Confidence 654 456778999999999886 59999997642 1 122 2346677777777653 3556654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.+..||||||||++|||||+++|++++||||||+||+.+++.+.+.++++. +++|+|+++|+++ ..+.+|+
T Consensus 455 ~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ 525 (529)
T TIGR02857 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADR 525 (529)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCE
Confidence 345799999999999999999999999999999999999999999999874 5899999999984 3466775
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=283.50 Aligned_cols=209 Identities=22% Similarity=0.296 Sum_probs=165.7
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-C--CeEEEEEEEcCc
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G--GYITGNITISGY 754 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~-~--~~~~G~i~i~g~ 754 (1247)
++++||+.++.... +...+++||||++++||++||+|.|||||||+.++|.|..+ + ...+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~~---------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTDA---------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecCC---------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 56788887765321 23569999999999999999999999999999999999765 2 246789999998
Q ss_pred cCCc---c----cccceEEEeccCCC--CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000867 755 PKKQ---E----TFTRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825 (1247)
Q Consensus 755 ~~~~---~----~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~ 825 (1247)
++-. + -+-+.+++++|++. +.|.+|+.+.+.=......... ..++..+++.++|+.+|+.+-.... +.
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~--~~ 149 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRL--KS 149 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHH--hh
Confidence 7532 1 12347899999964 6788999888765443322111 3455567788999999998643222 22
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccCChHHHHhhhc
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.+.+|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ .|.|+|++|||.. -+.++-|+
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDr 223 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADR 223 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcce
Confidence 3567999999999999999999999999999999999999999999999986 5999999999986 35666777
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=277.27 Aligned_cols=160 Identities=29% Similarity=0.439 Sum_probs=136.6
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++. .++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~ 68 (173)
T cd03246 2 EVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADISQ 68 (173)
T ss_pred EEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEEccc
Confidence 56777776531 123599999999999999999999999999999999998653 47999999987643
Q ss_pred ---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000867 759 ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 759 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
..+++.++|++|++.+++ .|++||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~ 102 (173)
T cd03246 69 WDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQR 102 (173)
T ss_pred CCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHHH
Confidence 234567899999988777 4998876 899999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 836 ~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+ +..|+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~ 164 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADR 164 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCE
Confidence 9999999999999999999999999999999999999998777999999999985 33 45555
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-32 Score=268.05 Aligned_cols=193 Identities=24% Similarity=0.335 Sum_probs=164.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~---~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
+|+++|||||||||||.+++++++.+ +|+|+++|.++..... .+.++.+.|++..-..+||+|-+.||.- +
T Consensus 29 iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRf---P 102 (252)
T COG4604 29 ITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRF---P 102 (252)
T ss_pred eeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCC---c
Confidence 58999999999999999999999987 9999999999865433 3678999999999999999999999731 1
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
.++-+ ...+.+.++++.++.+.|++.. ++...+||||||||.-||+
T Consensus 103 YSqGR-----------------------------lt~eD~~~I~~aieyl~L~~l~-----dryLd~LSGGQrQRAfIAM 148 (252)
T COG4604 103 YSQGR-----------------------------LTKEDRRIINEAIEYLHLEDLS-----DRYLDELSGGQRQRAFIAM 148 (252)
T ss_pred ccCCC-----------------------------CchHHHHHHHHHHHHhcccchH-----HHhHHhcccchhhhhhhhe
Confidence 11100 0122345678889999997655 4677789999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 158 al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
.++++.+.++||||.+.||...+.++++.|++++++.++++|+ +.|+.+.+..++|+|+-|++|+++.+|+++++.
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Ktivi-VlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVV-VLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEE-EEecccHHHhhhhheeeecCCEEEecCCHHHhc
Confidence 9999999999999999999999999999999999987665554 788999999999999999999999999999876
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=290.40 Aligned_cols=201 Identities=23% Similarity=0.305 Sum_probs=159.3
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--Ce--EEEEEEEc
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GY--ITGNITIS 752 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~--~~--~~G~i~i~ 752 (1247)
.+.+++++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|...+ |. +.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 478889887763 34699999999999999999999999999999999997542 21 23666666
Q ss_pred CccCCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 000867 753 GYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVGLP 825 (1247)
Q Consensus 753 g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~~ 825 (1247)
|.+... ...++.++|++|++.+++.+|++||+.+...... ....++.++.++++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 665432 2345678999999999999999999988643221 1123344456788999999964 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
...||+|||||++|||||+.+|++++|||||+|||..+...+.+.|+++.+ ++|||+++|++. .+.+..|+
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~ 221 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADY 221 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCE
Confidence 357999999999999999999999999999999999999999999998854 699999999985 44455666
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=293.05 Aligned_cols=200 Identities=23% Similarity=0.253 Sum_probs=157.4
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-CeEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~i~g 753 (1247)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 589999998763 1359999999999999999999999999999999999753 1 13589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN----PLRQSLVGL 824 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~g~ 824 (1247)
.++.. ..+++.++|++|++.+++ .|++||+.+....+. ..+.+..++.+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87632 234567999999988887 499999987653321 112222334566777777543 222332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
...||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+.+..|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~ 235 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDK 235 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCE
Confidence 357999999999999999999999999999999999999999999999865 799999999986 34455666
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=291.99 Aligned_cols=191 Identities=21% Similarity=0.344 Sum_probs=155.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+||||||||||+++|+|+.+|. +|+|.++|+++.... .++.++|++|++.+++.+|+.||+.++.... .
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~-- 100 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG-L-- 100 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc-c--
Confidence 37899999999999999999999887 899999998765432 2357999999998898899999998742110 0
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
... ......++++++.+||++..++. +..||||||||++||||+
T Consensus 101 ~~~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral 144 (232)
T PRK10771 101 KLN-------------------------------AAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQRVALARCL 144 (232)
T ss_pred CCC-------------------------------HHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHHHHHH
Confidence 000 00112356778899997655544 457999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
+.+|++++|||||+|||+.++..+.+.|+++.+. .++++++++|+..++.+.+|++++|++|++++.|+.+++.
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQE-RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999987653 2556667899999999999999999999999999887664
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=294.41 Aligned_cols=186 Identities=25% Similarity=0.355 Sum_probs=151.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1247)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++... .+.++|++|++.+++.+||+||+.++....+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~-- 101 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVE-- 101 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCC--
Confidence 47999999999999999999999887 99999999876532 245899999988888899999998864321100
Q ss_pred cchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHHh
Q 000867 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1247)
. .+....++++++.+||.+..+ +.+..|||||||||+|||||+
T Consensus 102 --------~------------------------~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 102 --------K------------------------MQRLEIAHQMLKKVGLEGAEK-----RYIWQLSGGQRQRVGIARALA 144 (255)
T ss_pred --------H------------------------HHHHHHHHHHHHHcCChhHhh-----CChhhCCHHHHHHHHHHHHHh
Confidence 0 011123567889999975544 345579999999999999999
Q ss_pred cCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEec--CCcEEEecCcc
Q 000867 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS--DAQIVYQGPRE 231 (1247)
Q Consensus 161 ~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~--~G~v~~~G~~~ 231 (1247)
.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++...||+|++|+ +|+++..++.+
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE-TGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999987543 35567778999999999999999998 59999888653
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=303.50 Aligned_cols=196 Identities=20% Similarity=0.271 Sum_probs=155.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCC--CceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSK--LKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~--~~~~G~v~~~g~~~~~~-----~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+||||||||||+++|+|+.++. ...+|+|.++|+++... ..++.++||+|+++++ +.|++|||.|+..
T Consensus 110 ~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~ 188 (329)
T PRK14257 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPR 188 (329)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC-CCcHHHHHHhHHH
Confidence 47999999999999999999998631 02389999999987531 2356799999998877 5799999998643
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
..+.. .. +..++.++..++..+|.+..++.++ +.+.+|||||||||
T Consensus 189 ~~~~~----------~~-----------------------~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl 234 (329)
T PRK14257 189 NNGIN----------DR-----------------------KILEKIVEKSLKSAALWDEVKDDLD-KAGNALSGGQQQRL 234 (329)
T ss_pred hcCCC----------hH-----------------------HHHHHHHHHHHHHcCCcchhhhhhh-CCcccCCHHHHHHH
Confidence 21100 00 0011123456677777544445555 45678999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+||||++.+|+|++|||||+|||+.+...+.+.++++.+ +.++++++|....+.+.+|+|++|++|++++.|+++++
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~---~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l 311 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK---KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTI 311 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999988643 36777799999999999999999999999999999887
Q ss_pred H
Q 000867 234 L 234 (1247)
Q Consensus 234 ~ 234 (1247)
.
T Consensus 312 ~ 312 (329)
T PRK14257 312 F 312 (329)
T ss_pred h
Confidence 5
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=293.06 Aligned_cols=199 Identities=19% Similarity=0.228 Sum_probs=157.7
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eEEEEEEEc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITIS 752 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~i~ 752 (1247)
..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..... +.+|+|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 4688999998763 235999999999999999999999999999999999975311 247999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000867 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQSLVG 823 (1247)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g 823 (1247)
|.++.. ..+++.++|++|+..+++. |+.||+.+....+. .. ...++.+++.++.+++.. ..+..
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 158 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK-- 158 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC--
Confidence 987632 2345678999999888874 99999987643321 11 122344567788888742 22332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 824 ~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
...||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+.+..|+
T Consensus 159 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~ 229 (274)
T PRK14265 159 ---GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADW 229 (274)
T ss_pred ---cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 357999999999999999999999999999999999999999999999864 689999999985 34556666
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=294.41 Aligned_cols=180 Identities=21% Similarity=0.267 Sum_probs=149.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+||+.++..
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~------- 107 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVIDNVGLGLK------- 107 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHHHHHhccc-------
Confidence 47999999999999999999999887 9999999976532 34679999999888888999999987421
Q ss_pred cchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHHh
Q 000867 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1247)
. . .+..++++++.+||.+..+ +.+..|||||||||+|||+|+
T Consensus 108 -~---~-----------------------------~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 108 -G---Q-----------------------------WRDAALQALAAVGLADRAN-----EWPAALSGGQKQRVALARALI 149 (257)
T ss_pred -c---h-----------------------------HHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHHh
Confidence 0 0 0012456788889875444 345679999999999999999
Q ss_pred cCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcc
Q 000867 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1247)
Q Consensus 161 ~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~ 231 (1247)
.+|++++|||||+|||+.++..+.+.|+++.+. .+.+|++++|+.+.+...+|+|++|++|++++.|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ-HGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999987553 3456677899999999999999999999999988653
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=282.82 Aligned_cols=185 Identities=24% Similarity=0.278 Sum_probs=163.6
Q ss_pred ceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc-------ccccceEEEeccCCCCCC
Q 000867 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFTRISGYCEQNDIHSP 776 (1247)
Q Consensus 704 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~~v~q~~~~~~ 776 (1247)
.-++|+|++|+.||+..|||-||||||||+++|.+..+ +..|+|.++|.++.. ..+++.++.|+|...++|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 46899999999999999999999999999999999876 458999999998643 123457899999999999
Q ss_pred CcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000867 777 FVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 856 (1247)
Q Consensus 777 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEp 856 (1247)
..||.||..|+..++ ..+++++++++.++++.+||....+.+. .+||||+||||.+||||+++|+||++|||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 999999999997766 4567888899999999999999999886 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 857 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 857 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+|.|||--+.++++.|.++.++ ++|||++|||.. |-+..=|+
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~r 234 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDR 234 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccce
Confidence 9999999999999999988644 899999999975 34445555
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=292.52 Aligned_cols=202 Identities=21% Similarity=0.280 Sum_probs=157.2
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--C-eEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~--~-~~~G~i~i~g 753 (1247)
.++++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|.... . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 488999988763 23599999999999999999999999999999999996431 1 2479999999
Q ss_pred ccCC-----cccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000867 754 YPKK-----QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1247)
Q Consensus 754 ~~~~-----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 828 (1247)
.++. ....++.++|++|++.+++ .|+.||+.+....+. .. ...++.++++++.+++.+..+... .....
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKL-KQSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcc
Confidence 8753 1234567899999988887 499999987653221 11 122345667788888753211111 11235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~ 219 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDM 219 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999865 589999999985 45566666
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-31 Score=289.00 Aligned_cols=187 Identities=33% Similarity=0.522 Sum_probs=147.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCC---CCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD---SKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~---~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
+++|+||||||||||+++|+|.++ |+ +|+|.++|+++.....++.++|++|++.+++.+||+||+.++......
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~ 111 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLP 111 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcc
Confidence 479999999999999999999998 65 999999998775434457899999999999999999999986543210
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHH-HHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY-YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
... .+ ......++. .++.+++.+.. ++.++.|||||||||+||
T Consensus 112 ~~~----~~---------------------------~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrl~la 155 (226)
T cd03234 112 RKS----SD---------------------------AIRKKRVEDVLLRDLALTRIG-----GNLVKGISGGERRRVSIA 155 (226)
T ss_pred ccc----ch---------------------------HHHHHHHHHHHHHhhcchhhh-----cccccCcCHHHHHHHHHH
Confidence 000 00 000011223 67777775443 445568999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCC-hhHHhhcccEEEecCCcEEEec
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPA-PETYDLFDDIILLSDAQIVYQG 228 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~-~~~~~~~D~v~~l~~G~v~~~G 228 (1247)
|+|+.+|++++|||||+|||+.++.++.+.++++.+ . +.++++++|+. .++.+.+|++++|++|++++.|
T Consensus 156 ral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 156 VQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-R-NRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998754 3 44556677776 6899999999999999998875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=293.89 Aligned_cols=194 Identities=27% Similarity=0.346 Sum_probs=149.4
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++. .++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhh
Confidence 56777776531 113599999999999999999999999999999999998653 47999999987542
Q ss_pred ---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCCC
Q 000867 759 ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQK-----MFIEEIMELV--ELNPLRQSLVGLPGES 828 (1247)
Q Consensus 759 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--~l~~~~~~~~g~~~~~ 828 (1247)
...++.++|++|++.+++ .|++||+.+.... ....... ..+++.++.+ ++.+..+.. ..
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GV 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CC
Confidence 233566899999988876 6999999765321 1111111 1233445544 454444433 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++|||||+.+|++++|||||+|||+.+...+.+.|+++. +++|||+++|++.. + ...|+
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~ 205 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLST-I-ENADR 205 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCE
Confidence 799999999999999999999999999999999999999999999986 48999999999963 3 33665
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=289.94 Aligned_cols=181 Identities=23% Similarity=0.324 Sum_probs=144.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc------c-ceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP------Q-RTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~------~-~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+|||||||||||++|+|.++|. +|+|.++|+++..... + +.++|++|++.+++.+||+||+.+...
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 109 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL 109 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHH
Confidence 47999999999999999999999887 9999999988754221 2 569999999888888999999988643
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
.... + . .+....+.++++.+||.+..+ +.+..|||||||||
T Consensus 110 ~~~~----~------~------------------------~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv 150 (221)
T TIGR02211 110 IGKK----S------V------------------------KEAKERAYEMLEKVGLEHRIN-----HRPSELSGGERQRV 150 (221)
T ss_pred hcCC----C------H------------------------HHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHH
Confidence 2110 0 0 001123456788899975444 34557999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEE
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIV 225 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~ 225 (1247)
+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+.. +.+|++++|+.+.+. .+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL-NTSFLVVTHDLELAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHh-hcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999876533 456666888887775 47999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=291.90 Aligned_cols=200 Identities=26% Similarity=0.365 Sum_probs=156.6
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|+++.++.. +++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 10 ~~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~ 77 (226)
T cd03248 10 GIVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP--QGGQVLLDGKP 77 (226)
T ss_pred ceEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCCc
Confidence 458899999887411 123599999999999999999999999999999999998653 47999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCCCC
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDS---ETQKMFIEEIMELV--ELNPLRQSLVGLPGE 827 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--~l~~~~~~~~g~~~~ 827 (1247)
+.. ...++.++|++|++.+++ .|++||+.+..... .... ...+..++++++.+ |+.+..+..+
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~----- 148 (226)
T cd03248 78 ISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC---SFECVKEAAQKAHAHSFISELASGYDTEVGEKG----- 148 (226)
T ss_pred hHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCC---CHHHHHHHHHHcCcHHHHHhccccccchhhcCC-----
Confidence 532 233467899999988776 59999997643211 1100 11112346777887 6766555543
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|+++|+++. + +..|+
T Consensus 149 ~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~ 217 (226)
T cd03248 149 SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQ 217 (226)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCE
Confidence 57999999999999999999999999999999999999999999999765 6899999999864 3 33565
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=295.50 Aligned_cols=211 Identities=28% Similarity=0.399 Sum_probs=172.0
Q ss_pred CCCCCccCCCCcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCe
Q 000867 665 KKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 744 (1247)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~ 744 (1247)
....+.+|.....++.+++.+.. + ..++++|+|+||.++|||-+||+||||||||||.++|.|.-. +
T Consensus 322 ~~~~m~LP~P~g~L~Ve~l~~~P---P--------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p 388 (580)
T COG4618 322 AAERMPLPAPQGALSVERLTAAP---P--------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--P 388 (580)
T ss_pred ccCCCCCCCCCceeeEeeeeecC---C--------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--c
Confidence 34456778788899999998742 2 245789999999999999999999999999999999999765 3
Q ss_pred EEEEEEEcCccCCcc---cccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHH-----HHHHHHHHHHcCCCc
Q 000867 745 ITGNITISGYPKKQE---TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQ-----KMFIEEIMELVELNP 816 (1247)
Q Consensus 745 ~~G~i~i~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~v~~~l~~l~l~~ 816 (1247)
.+|.|.+||.+.++. .+-+.+||.||+-.+|+ -||.||+. |...+.+.+.. ...|.+++ +.+.+
T Consensus 389 ~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa-----Rf~~~~d~~kIieAA~lAgvHelI--l~lP~ 460 (580)
T COG4618 389 TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA-----RFGEEADPEKVIEAARLAGVHELI--LRLPQ 460 (580)
T ss_pred CCCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH-----hccccCCHHHHHHHHHHcChHHHH--HhCcC
Confidence 589999999988653 45678999999999987 59999994 33334343321 11222322 45566
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHh
Q 000867 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFES 896 (1247)
Q Consensus 817 ~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~ 896 (1247)
-.||.+|.. +.+||||||||+++||||-.+|.+++||||-|+||.+....+.+.|.+..++|+|+|+++|+|+ +...
T Consensus 461 GYdT~iG~~-G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~ 537 (580)
T COG4618 461 GYDTRIGEG-GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALAS 537 (580)
T ss_pred CccCccCCC-CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhh
Confidence 678999854 4689999999999999999999999999999999999999999999999889999999999996 5556
Q ss_pred hhc
Q 000867 897 FDE 899 (1247)
Q Consensus 897 fd~ 899 (1247)
.|+
T Consensus 538 ~Dk 540 (580)
T COG4618 538 VDK 540 (580)
T ss_pred cce
Confidence 666
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=294.02 Aligned_cols=192 Identities=23% Similarity=0.368 Sum_probs=153.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCC--CceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSK--LKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~--~~~~G~v~~~g~~~~~~-----~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+||||||||||+++|+|..+|. ...+|+|.++|+++... ..++.++|++|++.+++ .|++||+.+...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~ 107 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPR 107 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHH
Confidence 47999999999999999999999763 11289999999887531 12467999999988887 999999998653
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCc----ccccccccCCccccccccc
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE----VCDDTLVGDEMVRGISGGQ 149 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~~t~vg~~~~~~LSGGq 149 (1247)
..+. .. ..+....++.+++.+||. +.. ++.+..|||||
T Consensus 108 ~~~~---~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~~~LSgG~ 149 (247)
T TIGR00972 108 LHGI---KD------------------------------KKELDEIVEESLKKAALWDEVKDRL-----HDSALGLSGGQ 149 (247)
T ss_pred hcCC---CC------------------------------HHHHHHHHHHHHHHcCCCcchhhHh-----hCCcccCCHHH
Confidence 2210 00 001112356678888986 333 34556899999
Q ss_pred cchhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecC
Q 000867 150 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGP 229 (1247)
Q Consensus 150 rqRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~ 229 (1247)
||||+|||||+.+|++++|||||+|||+.++..+.+.++++.+ + .+|++++|+.+++.+.+|++++|++|++++.|+
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998754 3 567778999999999999999999999999998
Q ss_pred cchHH
Q 000867 230 RELVL 234 (1247)
Q Consensus 230 ~~~~~ 234 (1247)
++++.
T Consensus 227 ~~~~~ 231 (247)
T TIGR00972 227 TEQIF 231 (247)
T ss_pred HHHHH
Confidence 87653
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=291.39 Aligned_cols=187 Identities=24% Similarity=0.308 Sum_probs=150.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++....+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP 104 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC
Confidence 47999999999999999999999987 999999998765322 13579999999989998999999988643211
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhC-CcccccccccCCccccccccccchhHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLG-LEVCDDTLVGDEMVRGISGGQKKRVTT 155 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrqRvsi 155 (1247)
. . .....+++++.++ +.+.. ++.+..||||||||++|
T Consensus 105 ~----~---------------------------------~~~~~~~~l~~~~~l~~~~-----~~~~~~LS~G~~qrv~l 142 (230)
T TIGR03410 105 R----R---------------------------------SRKIPDEIYELFPVLKEML-----GRRGGDLSGGQQQQLAI 142 (230)
T ss_pred c----c---------------------------------hHHHHHHHHHHHHhHHHHh-----hCChhhCCHHHHHHHHH
Confidence 0 0 0001233455554 33323 34556799999999999
Q ss_pred HHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 156 A~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
||||+.+|++++|||||+|||+.++.++.+.|+++.+. .++++++++|+.+++..++|++++|++|++++.|+.+++
T Consensus 143 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999999999987543 356677789999999999999999999999999987765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=290.51 Aligned_cols=187 Identities=23% Similarity=0.299 Sum_probs=147.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHD--VHIGEMTVRETLAFSA 72 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~--~~~~~lTv~e~l~f~~ 72 (1247)
+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++ .+++.+||+||+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~ 109 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL 109 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHH
Confidence 47999999999999999999999887 999999998875422 246799999997 4667899999998864
Q ss_pred hccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCc-ccccccccCCccccccccccc
Q 000867 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE-VCDDTLVGDEMVRGISGGQKK 151 (1247)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrq 151 (1247)
....... .. ...+...+++++.++|. ...+ +.+..|||||||
T Consensus 110 ~~~~~~~---------~~-----------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LS~G~~q 152 (228)
T cd03257 110 RIHGKLS---------KK-----------------------EARKEAVLLLLVGVGLPEEVLN-----RYPHELSGGQRQ 152 (228)
T ss_pred HhccCCc---------HH-----------------------HHHHHHHHHHHHHCCCChhHhh-----CCchhcCHHHHH
Confidence 3221000 00 00011124567888884 2333 445679999999
Q ss_pred hhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEec
Q 000867 152 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1247)
Q Consensus 152 RvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G 228 (1247)
||+|||||+.+|++++|||||+|||+.++..+.+.++++++. .+.+|++++|+.+++...+|++++|++|+++..|
T Consensus 153 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE-LGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999987653 2456777899999999999999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=290.56 Aligned_cols=200 Identities=26% Similarity=0.268 Sum_probs=156.6
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc-
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 755 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~- 755 (1247)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccc
Confidence 378889887763 13589999999999999999999999999999999998653 47999999976
Q ss_pred ----CCcc-------cccceEEEeccCCC--CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 000867 756 ----KKQE-------TFTRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSL 821 (1247)
Q Consensus 756 ----~~~~-------~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~ 821 (1247)
+... ..++.++|++|++. +.+.+|+.|++.+..... . .......++.++++++.+|+.+ ..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 3221 12345899999975 345678999986542211 1 0111223456788999999963 55554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 822 ~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. .+.+..|+
T Consensus 146 ~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~ 218 (253)
T TIGR02323 146 P-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQR 218 (253)
T ss_pred c-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 4 469999999999999999999999999999999999999999999997654 899999999985 34445565
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=303.12 Aligned_cols=198 Identities=19% Similarity=0.185 Sum_probs=158.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCC-ceeeEEEECCccCCCCcc-------cceEEEecccc--ccCCCCCHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKL-KFSGRVTYNGHGMDEFVP-------QRTAAYISQHD--VHIGEMTVRETLAF 70 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~-~~~G~v~~~g~~~~~~~~-------~~~i~yv~Q~~--~~~~~lTv~e~l~f 70 (1247)
+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++|++|++ .+.+.+||.+++..
T Consensus 35 ~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~ 114 (326)
T PRK11022 35 VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIME 114 (326)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHH
Confidence 479999999999999999999987421 248999999998754321 13699999987 47888999999876
Q ss_pred HHhccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCcccccccccc
Q 000867 71 SARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQK 150 (1247)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 150 (1247)
....... . ...+.++.++++|+.+||.+..+ +-++.+..||||||
T Consensus 115 ~l~~~~~---------~------------------------~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~LSgGq~ 159 (326)
T PRK11022 115 AIKVHQG---------G------------------------NKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQLSGGMS 159 (326)
T ss_pred HHHHhcC---------C------------------------CHHHHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHHH
Confidence 5432100 0 00112234677899999974321 12456778999999
Q ss_pred chhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCc
Q 000867 151 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1247)
Q Consensus 151 qRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~ 230 (1247)
|||+|||||+.+|+++++||||+|||+.++.++++.|+++.+. .+.++++++|+.+.+..++|+|++|++|++++.|+.
T Consensus 160 QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~-~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~ 238 (326)
T PRK11022 160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK-ENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKA 238 (326)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999998654 356777799999999999999999999999999998
Q ss_pred chHH
Q 000867 231 ELVL 234 (1247)
Q Consensus 231 ~~~~ 234 (1247)
+++.
T Consensus 239 ~~~~ 242 (326)
T PRK11022 239 HDIF 242 (326)
T ss_pred HHHh
Confidence 8875
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=286.36 Aligned_cols=199 Identities=23% Similarity=0.296 Sum_probs=165.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCC-C-CCceeeEEEECCccCCCCcc-------cceEEEecccc--ccCCCCCHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD-S-KLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHD--VHIGEMTVRETLA 69 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~-~-~~~~~G~v~~~g~~~~~~~~-------~~~i~yv~Q~~--~~~~~lTv~e~l~ 69 (1247)
+.+|+|.|||||||+.++|.|+++ + ....+|+|.++|+++..... .+.|+|++|++ .+-|.+||.+.+.
T Consensus 33 ~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~ 112 (316)
T COG0444 33 ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIA 112 (316)
T ss_pred EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHH
Confidence 368999999999999999999997 4 33468999999998643321 25799999984 6788899999987
Q ss_pred HHHhccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccc
Q 000867 70 FSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQ 149 (1247)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 149 (1247)
-..+.+.... ..+++.+.+.++|+.+||++.+ .+.+..+.+|||||
T Consensus 113 E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~--~~~~~YPhelSGGM 158 (316)
T COG0444 113 EVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPE--RRLKSYPHELSGGM 158 (316)
T ss_pred HHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHH--HHHhhCCcccCCcH
Confidence 7654321000 0122344567789999998643 24467889999999
Q ss_pred cchhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecC
Q 000867 150 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGP 229 (1247)
Q Consensus 150 rqRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~ 229 (1247)
||||.||.||+.+|++++.||||+|||..++.+|++.|+++.+ ..+++++.|||+..-+.++||||+||..|++++.|+
T Consensus 159 rQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~ 237 (316)
T COG0444 159 RQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGP 237 (316)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCC
Confidence 9999999999999999999999999999999999999999877 457888889999999999999999999999999999
Q ss_pred cchHH
Q 000867 230 RELVL 234 (1247)
Q Consensus 230 ~~~~~ 234 (1247)
.+++.
T Consensus 238 ~~~i~ 242 (316)
T COG0444 238 VEEIF 242 (316)
T ss_pred HHHHh
Confidence 98875
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=252.17 Aligned_cols=188 Identities=25% Similarity=0.323 Sum_probs=154.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC---------cccceEEEeccccccCCCCCHHHHHHHHH
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF---------VPQRTAAYISQHDVHIGEMTVRETLAFSA 72 (1247)
Q Consensus 2 ~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~---------~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~ 72 (1247)
+.++||||+|||||++.|.=+..|. +|+..+.|...+-. ..|+.+|+|+|+..++|.+||.||+.-+.
T Consensus 31 lvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap 107 (242)
T COG4161 31 LVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP 107 (242)
T ss_pred EEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh
Confidence 5789999999999999998777776 99999987643211 12467999999999999999999997542
Q ss_pred hccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccch
Q 000867 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKR 152 (1247)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 152 (1247)
++ + ..+.+.+++....++|+++.|.+.+| +.+-.|||||+||
T Consensus 108 -~k--------v------------------------~gl~~~qa~~~a~ellkrlrl~~~ad-----r~plhlsggqqqr 149 (242)
T COG4161 108 -CR--------V------------------------LGLSKDQALARAEKLLKRLRLKPYAD-----RYPLHLSGGQQQR 149 (242)
T ss_pred -HH--------H------------------------hCCCHHHHHHHHHHHHHHhccccccc-----cCceecccchhhh
Confidence 11 0 01122334445678899999987665 5666899999999
Q ss_pred hHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcch
Q 000867 153 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPREL 232 (1247)
Q Consensus 153 vsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~ 232 (1247)
|+|||||+.+|++|++||||++|||+-..++++.+++++.. +.+-++++|..+.+-..+.+|+.|++|+|++.|+.+.
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~t--gitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAET--GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhc--CceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999999999999999999999998653 5555668999999999999999999999999998754
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=331.60 Aligned_cols=193 Identities=24% Similarity=0.375 Sum_probs=153.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
.+||+||||||||||+++|+|.++|. +|+|.+||.++++.. .++.++||+|++.+|. .||+|||.++..-
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~--- 429 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPD--- 429 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCC---
Confidence 37999999999999999999999987 999999999887654 3688999999988777 6999999996321
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
+++ ++..+++... ...+.++ .++++.||.||+ ++.+||||||||++|||
T Consensus 430 ---------at~-------------eei~~a~k~a------~~~d~I~--~lp~g~dt~vge-~G~~LSgGQrQrlaiAR 478 (567)
T COG1132 430 ---------ATD-------------EEIEEALKLA------NAHEFIA--NLPDGYDTIVGE-RGVNLSGGQRQRLAIAR 478 (567)
T ss_pred ---------CCH-------------HHHHHHHHHh------ChHHHHH--hCcccccceecC-CCccCCHHHHHHHHHHH
Confidence 000 0111111100 0122222 368899999995 45579999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 158 al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
|++.+|+|++||||||+||+.++..|.+.+++.. .++|+++ +.|..+.+.+ +|+|++|++|++++.|+++++..
T Consensus 479 all~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii-IaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 479 ALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI-IAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE-EeccHhHHHh-CCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999998754 2345555 7887766655 99999999999999999999875
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=292.18 Aligned_cols=196 Identities=25% Similarity=0.387 Sum_probs=150.2
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.+. +.+.+++|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeH
Confidence 477889887753 123599999999999999999999999999999999998653 479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccc-c-----CCCC
Q 000867 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV-G-----LPGE 827 (1247)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~-g-----~~~~ 827 (1247)
.. ..+++.++|++|++.+++. |++||+.+... .... ..+++.++.+++.+..+... | ....
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 42 2345668999999888775 99999976421 1111 12334444444433322211 0 1123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.||||||||++||++|+.+|++++|||||+|||+.++..+++.|+++. +|+|||+++|++.. + +..|+
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~ 206 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADK 206 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCE
Confidence 5799999999999999999999999999999999999999999999985 58999999999863 3 34555
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=286.06 Aligned_cols=186 Identities=20% Similarity=0.291 Sum_probs=151.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-cccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|+++... ..++.++|++|++.+++.+|++||+.+...... .
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~-~- 100 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL-K- 100 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC-C-
Confidence 47999999999999999999999987 99999999886532 234679999999988988999999987532100 0
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
. . .+.+..++++++.+||++..++ .++.||||||||++||||+
T Consensus 101 --~--~----------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral 143 (213)
T TIGR01277 101 --L--N----------------------------AEQQEKVVDAAQQVGIADYLDR-----LPEQLSGGQRQRVALARCL 143 (213)
T ss_pred --c--c----------------------------HHHHHHHHHHHHHcCcHHHhhC-----CcccCCHHHHHHHHHHHHH
Confidence 0 0 0011234667888999755443 4557999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecC
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGP 229 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~ 229 (1247)
+.+|++++|||||+|||..++..+.+.++++.+. .+++|++++|+..++.+.+|++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSE-RQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999987643 35667778999999999999999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=289.45 Aligned_cols=184 Identities=26% Similarity=0.354 Sum_probs=152.5
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
-++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~~--- 65 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNG--- 65 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECC---
Confidence 478889887763 23599999999999999999999999999999999998653 479999987
Q ss_pred CcccccceEEEeccCCCCCCC--cCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000867 757 KQETFTRISGYCEQNDIHSPF--VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1247)
Q Consensus 757 ~~~~~~~~~~~v~q~~~~~~~--ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 834 (1247)
+..++|++|++.+++. .|+.+++.+. .... ++++.++++.+|+.+..+..+ +.|||||
T Consensus 66 -----~~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 66 -----KLRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred -----ccCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 2358999999877765 4778776431 1111 234678999999988777664 4699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 835 r~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||++||+||+.+|++++|||||+|||+.+...+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~ 190 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDE 190 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998765 899999999986 44555666
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=339.70 Aligned_cols=195 Identities=27% Similarity=0.383 Sum_probs=161.1
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|++|+++. .++++|+|+|++|+|||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 57999999998852 124699999999999999999999999999999999998763 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 825 (1247)
+.+ ..+++.+|||+|++.+++ .|++||+.++. + +.+. +.+.++++..++.+. .|+.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC----C-CCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 653 456788999999999886 59999997541 1 2222 335667777776543 35666643
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.+||||||||++|||||+++|+||+||||||+||+.++..+.+.|++ .++|+|+++|+++ ....+|+
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~ 680 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDE 680 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCE
Confidence 468999999999999999999999999999999999999999999986 4899999999985 4456777
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-31 Score=301.70 Aligned_cols=192 Identities=18% Similarity=0.192 Sum_probs=158.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHD--VHIGEMTVRETLAFSA 72 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~--~~~~~lTv~e~l~f~~ 72 (1247)
+++|+|+||||||||+++|+|+++|. +|+|.++|+++.... .++.++||+|++ .+.+.+||.+++....
T Consensus 43 ~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~ 119 (327)
T PRK11308 43 TLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPL 119 (327)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHH
Confidence 47999999999999999999999886 899999998875432 245799999987 5788899999998754
Q ss_pred hccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcc-cccccccCCccccccccccc
Q 000867 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEV-CDDTLVGDEMVRGISGGQKK 151 (1247)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrq 151 (1247)
..... . ...+.+..+.++++.+||.. .. ++.+..|||||||
T Consensus 120 ~~~~~---------~------------------------~~~~~~~~~~~~l~~~gL~~~~~-----~~~p~~LSgGq~Q 161 (327)
T PRK11308 120 LINTS---------L------------------------SAAERREKALAMMAKVGLRPEHY-----DRYPHMFSGGQRQ 161 (327)
T ss_pred HHccC---------C------------------------CHHHHHHHHHHHHHHCCCChHHh-----cCCCccCCHHHHH
Confidence 32110 0 00112234677899999953 23 4556789999999
Q ss_pred hhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcc
Q 000867 152 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1247)
Q Consensus 152 RvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~ 231 (1247)
||+|||||+.+|++|++||||+|||..++.+|++.|+++.+. .++++++++|+...+..++|+|++|++|++++.|+.+
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~ 240 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKE 240 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999987654 3567777999999999999999999999999999988
Q ss_pred hHH
Q 000867 232 LVL 234 (1247)
Q Consensus 232 ~~~ 234 (1247)
++.
T Consensus 241 ~~~ 243 (327)
T PRK11308 241 QIF 243 (327)
T ss_pred HHh
Confidence 875
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-31 Score=288.51 Aligned_cols=181 Identities=22% Similarity=0.298 Sum_probs=147.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++||+.+....
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLII 106 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHh
Confidence 47999999999999999999999887 999999998765321 246799999998888899999999886432
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
.+.. .++....++++++.+||.+..+. .+..||||||||++
T Consensus 107 ~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~ 147 (222)
T PRK10908 107 AGAS----------------------------------GDDIRRRVSAALDKVGLLDKAKN-----FPIQLSGGEQQRVG 147 (222)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhC-----CchhCCHHHHHHHH
Confidence 2100 00111234567888898754443 45579999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEE
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIV 225 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~ 225 (1247)
||||++.+|++++|||||+|||+.++..+.+.++++.+ . ++++++++|+.+++...+|++++|++|+++
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-V-GVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999999999998754 2 556777899999999999999999999974
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=283.14 Aligned_cols=166 Identities=44% Similarity=0.732 Sum_probs=138.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+++|+||||||||||+++|+|.++|....+|+|.++|.++... ..++.++|++|++.+++.+||+||+.++....
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--- 111 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--- 111 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc---
Confidence 4799999999999999999999982112399999999887543 23467999999999999999999998743110
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
.++.+..||||||||++||||
T Consensus 112 -----------------------------------------------------------~~~~~~~LS~Ge~qrl~lara 132 (202)
T cd03233 112 -----------------------------------------------------------GNEFVRGISGGERKRVSIAEA 132 (202)
T ss_pred -----------------------------------------------------------cccchhhCCHHHHHHHHHHHH
Confidence 123445799999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEec
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G 228 (1247)
|+.+|++++|||||+|||+.++..+.+.++++.+..+.++++++||+.+++.+.+|++++|++|++++.|
T Consensus 133 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 133 LVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999998865434566776777778999999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-31 Score=320.14 Aligned_cols=189 Identities=25% Similarity=0.311 Sum_probs=156.5
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcc----cccceEEEeccCCCCCCCc
Q 000867 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFTRISGYCEQNDIHSPFV 778 (1247)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~~~~~~l 778 (1247)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|+..+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 4699999999999999999999999999999999998653 479999999876421 2345689999999888999
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000867 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 858 (1247)
Q Consensus 779 tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpts 858 (1247)
||+||+.+..........+.+...++++++++.+++.+..+..+ ..|||||||||+||+||+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532111111123334456889999999987777665 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 859 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 859 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||+.+...+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~ 203 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDE 203 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 99999999999999998877999999999985 34455666
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=339.32 Aligned_cols=197 Identities=24% Similarity=0.362 Sum_probs=161.7
Q ss_pred CcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCc
Q 000867 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1247)
Q Consensus 675 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 754 (1247)
...++++|++++++ +++++|+|+|++|+|||++||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 471 ~~~I~~~~vsf~y~------------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~ 536 (708)
T TIGR01193 471 NGDIVINDVSYSYG------------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGF 536 (708)
T ss_pred CCcEEEEEEEEEcC------------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCE
Confidence 34799999999874 123599999999999999999999999999999999998763 4799999999
Q ss_pred cCCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccC
Q 000867 755 PKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGL 824 (1247)
Q Consensus 755 ~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~ 824 (1247)
++.+ ..+++.+|||+|++.+++ -|++||+.++.. .+.+. +.+.++++..++.+. .|+.+|.
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e 607 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSE 607 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecC
Confidence 8643 456778999999999886 499999986521 12222 235666666666432 3666664
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++.+||||||||++||||++++|+||+||||||+||++++..+++.|+++ +|+|+|+++|+++ ..+.+|+
T Consensus 608 -~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~ 677 (708)
T TIGR01193 608 -EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDK 677 (708)
T ss_pred -CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCE
Confidence 34689999999999999999999999999999999999999999999875 4799999999995 4566777
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-31 Score=296.79 Aligned_cols=191 Identities=25% Similarity=0.339 Sum_probs=155.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDV-HIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .+...||.||+.++....+
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~ 108 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG 108 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC
Confidence 47999999999999999999999987 999999998765322 2357999999863 3446799999987543211
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
. + ..+.+..++++++.+||.+..++. ++.||||||||++||
T Consensus 109 ~----~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrl~la 149 (277)
T PRK13652 109 L----D------------------------------EETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKKRVAIA 149 (277)
T ss_pred C----C------------------------------HHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHHHHHH
Confidence 0 0 001122356788999997655544 457999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||+.+|++++|||||+|||+.++..+.+.++++.+. .+++|++++|+.+++.+.||++++|++|++++.|+++++.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 9999999999999999999999999999999987653 3567777899999999999999999999999999988764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=291.92 Aligned_cols=188 Identities=24% Similarity=0.366 Sum_probs=150.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.++.....
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 109 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAE 109 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccC
Confidence 47899999999999999999999887 999999998875432 23579999999888988999999987532100
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHh-CCcccccccccCCccccccccccchhHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVL-GLEVCDDTLVGDEMVRGISGGQKKRVTT 155 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqrqRvsi 155 (1247)
. .+ ....++++++.+ ++.+..+ +.+..||||||||++|
T Consensus 110 ---~----~~-----------------------------~~~~~~~~l~~~~~l~~~~~-----~~~~~LS~G~~qrl~l 148 (237)
T PRK11614 110 ---R----DQ-----------------------------FQERIKWVYELFPRLHERRI-----QRAGTMSGGEQQMLAI 148 (237)
T ss_pred ---h----hH-----------------------------HHHHHHHHHHHHHHHHHHHh-----CchhhCCHHHHHHHHH
Confidence 0 00 001123344555 3543333 3455799999999999
Q ss_pred HHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 156 A~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
||||+.+|++++|||||+|||+.++..+.+.++++.+ . +++|+.++|+.+++.+.+|++++|++|++++.|+++++.
T Consensus 149 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-Q-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 9999999999999999999999999999999998754 3 556666899999999999999999999999999887764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-31 Score=294.34 Aligned_cols=191 Identities=21% Similarity=0.291 Sum_probs=154.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC----------------cccceEEEeccccccCCCCCH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF----------------VPQRTAAYISQHDVHIGEMTV 64 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~----------------~~~~~i~yv~Q~~~~~~~lTv 64 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv 109 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 109 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcH
Confidence 47999999999999999999999886 89999999876420 124579999999999988999
Q ss_pred HHHHHHHHh-ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccc
Q 000867 65 RETLAFSAR-CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVR 143 (1247)
Q Consensus 65 ~e~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 143 (1247)
+||+.++.. .... . ..+.+..+.++++.+||.+.. .++.+.
T Consensus 110 ~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~~l~~~gl~~~~----~~~~~~ 151 (257)
T PRK10619 110 LENVMEAPIQVLGL----------S------------------------KQEARERAVKYLAKVGIDERA----QGKYPV 151 (257)
T ss_pred HHHHHHHHHHhCCC----------C------------------------HHHHHHHHHHHHHHcCCChhh----hhCCcc
Confidence 999987532 1100 0 001122356678899997542 124456
Q ss_pred cccccccchhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCc
Q 000867 144 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQ 223 (1247)
Q Consensus 144 ~LSGGqrqRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~ 223 (1247)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .+.+|++++|+..++..+||+|++|++|+
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999998754 35667778999999999999999999999
Q ss_pred EEEecCcchHH
Q 000867 224 IVYQGPRELVL 234 (1247)
Q Consensus 224 v~~~G~~~~~~ 234 (1247)
+++.|+++++.
T Consensus 230 i~~~~~~~~~~ 240 (257)
T PRK10619 230 IEEEGAPEQLF 240 (257)
T ss_pred EEEeCCHHHhh
Confidence 99999887653
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=289.82 Aligned_cols=182 Identities=24% Similarity=0.350 Sum_probs=152.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc---ccccceEEEeccCCCCCCCcCHH
Q 000867 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPFVTVY 781 (1247)
Q Consensus 705 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~ 781 (1247)
+|+|+|+++++||+++|+||||||||||+++|+|..+ . +|+|.++|.++.. ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999764 2 7999999987643 22345689999998888889999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCcEEEEe
Q 000867 782 ESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVA-------NPSIIFMD 854 (1247)
Q Consensus 782 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~-------~p~il~lD 854 (1247)
||+.+.... ....+..+++++++++.+|+.+..++.+ +.||||||||++||+||+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 1122333456789999999987766654 4699999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 855 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 855 EptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~ 202 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADR 202 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999998777899999999986 34555665
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=289.08 Aligned_cols=204 Identities=22% Similarity=0.279 Sum_probs=158.1
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-CeEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~i~g 753 (1247)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.+||
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 367888887653 2359999999999999999999999999999999999643 1 12479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000867 754 YPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1247)
Q Consensus 754 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 828 (1247)
.++.. ...++.++|++|++.+++. |+.||+.+...... ..+.+..++++.++++.+++.+...... +....
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcc
Confidence 87642 1335679999999988875 99999987643221 1123334566788899998854221111 11235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||+|||||++|||+|+.+|++++|||||+|||..+...+.+.|++++ +++|||+++|++. ++.+..|+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~~~~~ 214 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQ-QATRVSKY 214 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHH-HHHhhcCE
Confidence 799999999999999999999999999999999999999999999985 4799999999985 33333443
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=336.84 Aligned_cols=198 Identities=27% Similarity=0.419 Sum_probs=163.5
Q ss_pred CcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCc
Q 000867 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1247)
Q Consensus 675 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 754 (1247)
...++++|++++++. +++++|+|+|++|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.
T Consensus 461 ~~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~ 527 (694)
T TIGR03375 461 QGEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGV 527 (694)
T ss_pred cceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCE
Confidence 357999999999841 234699999999999999999999999999999999998763 4799999999
Q ss_pred cCCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccC
Q 000867 755 PKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGL 824 (1247)
Q Consensus 755 ~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~ 824 (1247)
++++ ..+++.++||+|++.+++ .|++||+.+.. + +.+. +++.++++..++.+. .|+.+|.
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e 597 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA----P-YADD----EEILRAAELAGVTEFVRRHPDGLDMQIGE 597 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC----C-CCCH----HHHHHHHHHcChHHHHHhCcccccceecC
Confidence 8754 456788999999999887 59999997641 1 2222 335666777666542 3566664
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
. +.+||||||||++|||||+++|++++||||||+||++++..+++.|+++. +++|+|+++|+++ ..+.+|+
T Consensus 598 ~-G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~ 668 (694)
T TIGR03375 598 R-GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDR 668 (694)
T ss_pred C-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCE
Confidence 3 46799999999999999999999999999999999999999999999875 4799999999995 4567777
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-31 Score=291.64 Aligned_cols=196 Identities=19% Similarity=0.281 Sum_probs=155.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++.....
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~ 106 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDK 106 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccc
Confidence 47999999999999999999999887 999999998765322 13469999999999999999999988643110
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
..+...... ...+.+..++++++.+|+++..+. .++.|||||||||+||
T Consensus 107 --~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Ge~qrv~la 155 (242)
T TIGR03411 107 --SVFASLFFR------------------------LSAEEKDRIEEVLETIGLADEADR-----LAGLLSHGQKQWLEIG 155 (242)
T ss_pred --ccccccccc------------------------cHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHH
Confidence 000000000 000112245678899999765544 4457999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
||++.+|++++|||||+|||+.++..+.+.++++.+ +.+|++++|+.+++.++||++++|++|++++.|+.+++
T Consensus 156 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 156 MLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG---KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc---CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 999999999999999999999999999999998743 35677789999999999999999999999999987665
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=296.45 Aligned_cols=189 Identities=26% Similarity=0.354 Sum_probs=153.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc----ccceEEEeccccc-cCCCCCHHHHHHHHHhcc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHDV-HIGEMTVRETLAFSARCQ 75 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~i~yv~Q~~~-~~~~lTv~e~l~f~~~~~ 75 (1247)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|++. .+...||.||+.++....
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 106 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL 106 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc
Confidence 47999999999999999999999887 999999998875321 2357999999865 366789999998864321
Q ss_pred CCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHH
Q 000867 76 GVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTT 155 (1247)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsi 155 (1247)
+.. ..+.++.++++++.+||.+..++. +..||||||||++|
T Consensus 107 ~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~l 147 (274)
T PRK13644 107 CLP----------------------------------PIEIRKRVDRALAEIGLEKYRHRS-----PKTLSGGQGQCVAL 147 (274)
T ss_pred CCC----------------------------------HHHHHHHHHHHHHHCCCHHHhcCC-----cccCCHHHHHHHHH
Confidence 100 001122356778899997665544 45799999999999
Q ss_pred HHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 156 A~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
||||+.+|++++|||||+|||+.++..+.+.++++.+ .+++|++++|+.+++ ..+|++++|++|++++.|+.+++.
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~~tH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE--KGKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999998754 356677789998887 569999999999999999987754
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=294.16 Aligned_cols=206 Identities=21% Similarity=0.280 Sum_probs=156.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----PQRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+||||||||||+++|+|+.+|+ +|+|.++|.++.... .+..++|++|++.+++.+||+||+.++.....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 109 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQL 109 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccc
Confidence 47999999999999999999999987 999999998775422 12358999999999999999999998643110
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
.. +....... . +. . .....+....++++++.+||.+..+ +.+..||||||||++||
T Consensus 110 ~~---~~~~~~~~------~-~~--~-------~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~la 165 (255)
T PRK11300 110 KT---GLFSGLLK------T-PA--F-------RRAESEALDRAATWLERVGLLEHAN-----RQAGNLAYGQQRRLEIA 165 (255)
T ss_pred cc---hhhhhhcc------c-cc--c-------ccchhHHHHHHHHHHHhCChhhhhh-----CChhhCCHHHHHHHHHH
Confidence 00 00000000 0 00 0 0000012234567788899875444 44557999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++.+.||++++|++|++++.|+++++.
T Consensus 166 ~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 166 RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE-HNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHh
Confidence 9999999999999999999999999999999987553 3566777899999999999999999999999999877653
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=294.64 Aligned_cols=207 Identities=25% Similarity=0.302 Sum_probs=160.5
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeEEEEEEEc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 752 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~i~ 752 (1247)
..+.++|+++.+. .+.+|+|+|++|++||+++|+|+||||||||+++|+|.... .+.+|+|.++
T Consensus 44 ~~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~ 110 (305)
T PRK14264 44 AKLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELD 110 (305)
T ss_pred ceEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3588999998763 23599999999999999999999999999999999997531 1358999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCC---------CCC-HHHHHHHHHHHHHHcCCCcc
Q 000867 753 GYPKKQ-----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP---------EVD-SETQKMFIEEIMELVELNPL 817 (1247)
Q Consensus 753 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~---------~~~-~~~~~~~v~~~l~~l~l~~~ 817 (1247)
|.++.. ...++.++|++|++.+++ .||+||+.+....+... ... .+..++.++++++.+++.+.
T Consensus 111 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 189 (305)
T PRK14264 111 GQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE 189 (305)
T ss_pred CEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh
Confidence 987642 123467899999988887 59999998764321100 011 12234567889999988532
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhh
Q 000867 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESF 897 (1247)
Q Consensus 818 ~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~f 897 (1247)
.+... ....+.||||||||++||+||+.+|+||+|||||+|||+.+...+.+.|+++++ +.|||+++|+++. +.+..
T Consensus 190 ~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~-i~~~~ 266 (305)
T PRK14264 190 VNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQ-AARIS 266 (305)
T ss_pred hhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHH-HHHhc
Confidence 21221 112357999999999999999999999999999999999999999999999876 4899999999863 44555
Q ss_pred hc
Q 000867 898 DE 899 (1247)
Q Consensus 898 d~ 899 (1247)
|+
T Consensus 267 d~ 268 (305)
T PRK14264 267 DQ 268 (305)
T ss_pred CE
Confidence 65
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=288.91 Aligned_cols=202 Identities=21% Similarity=0.248 Sum_probs=159.5
Q ss_pred CcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--C-eEEEEEEE
Q 000867 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITI 751 (1247)
Q Consensus 675 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~--~-~~~G~i~i 751 (1247)
+..++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+ + ..+|+|.+
T Consensus 14 ~~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~ 80 (265)
T PRK14252 14 QQKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL 80 (265)
T ss_pred CceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEE
Confidence 45689999998763 23599999999999999999999999999999999997542 1 25899999
Q ss_pred cCccCC---c----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccc
Q 000867 752 SGYPKK---Q----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----LRQS 820 (1247)
Q Consensus 752 ~g~~~~---~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~ 820 (1247)
+|.+.. . ..+++.++|++|++.+++. |++||+.+...... ....+..++.++++++.+++.+ ..+.
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 157 (265)
T PRK14252 81 HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDRLGD 157 (265)
T ss_pred cCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHHHhC
Confidence 987643 1 1345678999999988885 99999987643221 1112223455778888888742 2233
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 821 ~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
. ...||||||||++|||+|+.+|++++|||||+|||..+...+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 158 ~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~ 229 (265)
T PRK14252 158 L-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDY 229 (265)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCE
Confidence 3 347999999999999999999999999999999999999999999999865 689999999985 35556666
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=257.71 Aligned_cols=181 Identities=24% Similarity=0.343 Sum_probs=153.5
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc----------------ccccce
Q 000867 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----------------ETFTRI 764 (1247)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~~ 764 (1247)
+...+||+||+..+.|+.+.|+|.|||||||+|+||.-... +..|.|.+||..+.. ...+..
T Consensus 17 G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~ 94 (256)
T COG4598 17 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR 94 (256)
T ss_pred ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH
Confidence 45679999999999999999999999999999999987655 347999999975421 012334
Q ss_pred EEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000867 765 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVEL 844 (1247)
Q Consensus 765 ~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l 844 (1247)
.|+|+|...++..+||.||+.=+- .+. ...++.+..++.+..|+.+|+.+.+|.+. ..|||||+||++|||||
T Consensus 95 L~mVFQ~FNLWsHmtvLeNViEaP-vhV-Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQQR~aIARaL 167 (256)
T COG4598 95 LGMVFQHFNLWSHMTVLENVIEAP-VHV-LGVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQQRVAIARAL 167 (256)
T ss_pred hhHhhhhcchhHHHHHHHHHHhcc-hHh-hcCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHHHHHHHHHHH
Confidence 699999999999999999985331 111 23455666677889999999999988764 36999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCC
Q 000867 845 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 845 ~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1247)
+.+|+++++|||||.|||+-.-++.+.+++++++|+|.+++||...
T Consensus 168 ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 9999999999999999999999999999999999999999999764
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=293.85 Aligned_cols=190 Identities=21% Similarity=0.286 Sum_probs=153.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC---cccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF---VPQRTAAYISQHDV-HIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~i~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++|++|++. +++..|+++|+.+.....+
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~ 113 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA 113 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC
Confidence 47999999999999999999999887 99999999887532 22467999999874 6778899999988643211
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
.. ..+....++++++.+|+.+..+ ..+..||||||||++||
T Consensus 114 ~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 114 VP----------------------------------YDEMHRRVSEALKQVDMLERAD-----YEPNALSGGQKQRVAIA 154 (269)
T ss_pred CC----------------------------------HHHHHHHHHHHHHHcCCchhhh-----CCcccCCHHHHHHHHHH
Confidence 00 0001123566788899876544 34567999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
||++.+|++++|||||+|||+.++..+.+.++++.+. .+++|++++|+..++.. +|+|++|++|++++.|+++++.
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE-HNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999987543 35566678888888875 9999999999999999987764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-31 Score=296.60 Aligned_cols=190 Identities=21% Similarity=0.298 Sum_probs=151.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-------cccceEEEeccccc-cCCCCCHHHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-------VPQRTAAYISQHDV-HIGEMTVRETLAFSA 72 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~i~yv~Q~~~-~~~~lTv~e~l~f~~ 72 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++. .+...||+||+.+..
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~ 111 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGP 111 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHH
Confidence 47999999999999999999999887 99999999876432 12457999999862 233469999998864
Q ss_pred hccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcc-cccccccCCccccccccccc
Q 000867 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEV-CDDTLVGDEMVRGISGGQKK 151 (1247)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrq 151 (1247)
...+.. .++.+..++++++.+||.. ..+ +.+..|||||||
T Consensus 112 ~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG~~q 152 (280)
T PRK13649 112 QNFGVS----------------------------------QEEAEALAREKLALVGISESLFE-----KNPFELSGGQMR 152 (280)
T ss_pred HHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhhh-----CCcccCCHHHHH
Confidence 321100 0011123466788888863 233 445679999999
Q ss_pred hhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcc
Q 000867 152 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1247)
Q Consensus 152 RvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~ 231 (1247)
|++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|++++|+.+++...+|++++|++|++++.|+++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-S-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999998754 2 566777899999999999999999999999999887
Q ss_pred hHH
Q 000867 232 LVL 234 (1247)
Q Consensus 232 ~~~ 234 (1247)
++.
T Consensus 231 ~~~ 233 (280)
T PRK13649 231 DIF 233 (280)
T ss_pred HHh
Confidence 764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-31 Score=296.95 Aligned_cols=190 Identities=24% Similarity=0.325 Sum_probs=154.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC----cccceEEEeccccc-cCCCCCHHHHHHHHHhcc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF----VPQRTAAYISQHDV-HIGEMTVRETLAFSARCQ 75 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~----~~~~~i~yv~Q~~~-~~~~lTv~e~l~f~~~~~ 75 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++. .+...||.||+.|+....
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~ 114 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL 114 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc
Confidence 47999999999999999999999987 99999999887532 22467999999863 233569999999864321
Q ss_pred CCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHH
Q 000867 76 GVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTT 155 (1247)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsi 155 (1247)
+.. ..+.+..++++++.+||++..++. +..||||||||++|
T Consensus 115 ~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qrv~l 155 (280)
T PRK13633 115 GIP----------------------------------PEEIRERVDESLKKVGMYEYRRHA-----PHLLSGGQKQRVAI 155 (280)
T ss_pred CCC----------------------------------HHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHHH
Confidence 100 001122356788999998766554 45799999999999
Q ss_pred HHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 156 A~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
||+|+.+|++++|||||+|||+.++..+.+.++++.+. .+++|++++|+.+++.. +|++++|++|++++.|+++++.
T Consensus 156 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK-YGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999987653 35667778898888876 9999999999999999988875
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=296.00 Aligned_cols=190 Identities=24% Similarity=0.326 Sum_probs=153.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC---cccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF---VPQRTAAYISQHDV-HIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~i~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++... ..++.++|++|++. .++.+||+||+.++.....
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~ 113 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK 113 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC
Confidence 47999999999999999999999987 99999999887532 23467999999863 5777899999988643211
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
. . ..+.+..++++++.+||.+..++. ++.||||||||++||
T Consensus 114 ~----~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 154 (271)
T PRK13632 114 V----P------------------------------PKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQKQRVAIA 154 (271)
T ss_pred C----C------------------------------HHHHHHHHHHHHHHcCCHHHhhCC-----cccCCHHHHHHHHHH
Confidence 0 0 001122356788899997655544 457999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||+.+|++++|||||+|||+.++..+++.++++.+. ++++|++++|+.+++. .+|++++|++|++++.|+.+++.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999987653 3456666788887775 79999999999999999877654
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-31 Score=296.08 Aligned_cols=190 Identities=28% Similarity=0.371 Sum_probs=152.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-----cccceEEEecccccc-CCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVH-IGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-----~~~~~i~yv~Q~~~~-~~~lTv~e~l~f~~~~ 74 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.. +...|+.||+.+....
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~ 105 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRN 105 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHH
Confidence 47999999999999999999999987 99999999886411 123579999998652 4456899999885432
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
.+.. . .+....++++++.+||.+..++ .+..||||||||++
T Consensus 106 ~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrl~ 146 (271)
T PRK13638 106 LGVP----------E------------------------AEITRRVDEALTLVDAQHFRHQ-----PIQCLSHGQKKRVA 146 (271)
T ss_pred cCCC----------H------------------------HHHHHHHHHHHHHcCCHhHhcC-----CchhCCHHHHHHHH
Confidence 1100 0 0011234667888898765544 45579999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|++++|+.+++.+++|++++|++|++++.|+++++.
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-Q-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998754 3 456777899999999999999999999999999887654
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=286.13 Aligned_cols=179 Identities=28% Similarity=0.402 Sum_probs=144.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC---cccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF---VPQRTAAYISQHDV-HIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~i~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++. .++.+|++||+.++....+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~ 105 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG 105 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC
Confidence 47999999999999999999999887 99999999876532 12467999999864 3667899999988643211
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
. . . .+.+..++++++.+||.+..+ +.+..|||||||||+||
T Consensus 106 ~----~------~------------------------~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la 146 (211)
T cd03225 106 L----P------E------------------------EEIEERVEEALELVGLEGLRD-----RSPFTLSGGQKQRVAIA 146 (211)
T ss_pred C----C------H------------------------HHHHHHHHHHHHHcCcHhhhc-----CCcccCCHHHHHHHHHH
Confidence 0 0 0 001123466788889875444 34557999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCc
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQ 223 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~ 223 (1247)
|||+.+|++++|||||+|||+.++..+.+.++++.+ . +++|++++|+..++..+||++++|++|+
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 147 GVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-E-GKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999998765 2 5667778999999999999999999885
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-31 Score=292.99 Aligned_cols=191 Identities=30% Similarity=0.427 Sum_probs=154.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++......
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 106 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL 106 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC
Confidence 47999999999999999999999887 999999998764322 235699999998887889999999885321100
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
. .++.+..++++++.+||.+..++. +..|||||||||+|||
T Consensus 107 --~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 107 --S--------------------------------RAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRVQLAR 147 (258)
T ss_pred --C--------------------------------cHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHH
Confidence 0 000112346678889997655544 4579999999999999
Q ss_pred HHh------cCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcc
Q 000867 158 MMV------GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1247)
Q Consensus 158 al~------~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~ 231 (1247)
||+ .+|++++|||||+|||+.++..+.+.|+++.+.. +.+|++++|+..++..++|+|++|++|++++.|+.+
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-GLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPA 226 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHH
Confidence 999 5999999999999999999999999999876333 456777899999999999999999999999999876
Q ss_pred hHH
Q 000867 232 LVL 234 (1247)
Q Consensus 232 ~~~ 234 (1247)
++.
T Consensus 227 ~~~ 229 (258)
T PRK13548 227 EVL 229 (258)
T ss_pred HHh
Confidence 653
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-31 Score=292.78 Aligned_cols=192 Identities=21% Similarity=0.272 Sum_probs=155.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC----------------cccceEEEeccccccCCCCCH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF----------------VPQRTAAYISQHDVHIGEMTV 64 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~----------------~~~~~i~yv~Q~~~~~~~lTv 64 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++..||
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 104 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTV 104 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcH
Confidence 47999999999999999999999887 99999999876421 124679999999988989999
Q ss_pred HHHHHHHHhccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCcccc
Q 000867 65 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRG 144 (1247)
Q Consensus 65 ~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 144 (1247)
.||+.++..... + .. ..+....++++++.+|+.+..+ +.+..
T Consensus 105 ~~nl~~~~~~~~-~--~~------------------------------~~~~~~~~~~~l~~~gl~~~~~-----~~~~~ 146 (252)
T TIGR03005 105 LDNVTEAPVLVL-G--MA------------------------------RAEAEKRAMELLDMVGLADKAD-----HMPAQ 146 (252)
T ss_pred HHHHHHHHHHhc-C--CC------------------------------HHHHHHHHHHHHHHcCChhHhh-----cChhh
Confidence 999987532100 0 00 0011123566788899875444 34567
Q ss_pred ccccccchhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcE
Q 000867 145 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQI 224 (1247)
Q Consensus 145 LSGGqrqRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v 224 (1247)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .++++++++|+.+++.+++|++++|++|++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEMGFAREFADRVCFFDKGRI 225 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999987653 356777789999999999999999999999
Q ss_pred EEecCcchHH
Q 000867 225 VYQGPRELVL 234 (1247)
Q Consensus 225 ~~~G~~~~~~ 234 (1247)
++.|+.+++.
T Consensus 226 ~~~g~~~~~~ 235 (252)
T TIGR03005 226 VEQGKPDEIF 235 (252)
T ss_pred EEeCCHHHHh
Confidence 9999877653
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-31 Score=286.25 Aligned_cols=182 Identities=25% Similarity=0.328 Sum_probs=151.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1247)
+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .+.++|++|++.+++.+|++||+.+.....+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~--- 100 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLLGL--- 100 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcCC---
Confidence 37999999999999999999999887 999999998765322 35799999998888889999999875432110
Q ss_pred cchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHHh
Q 000867 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1247)
.+..+.++++.+||.+..+. .+..||||||||++||||++
T Consensus 101 -----------------------------------~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 101 -----------------------------------PDSRIDEVLNIVDLTNTGKK-----KAKQFSLGMKQRLGIAIALL 140 (223)
T ss_pred -----------------------------------CHHHHHHHHHHcCCcHHHhh-----hHhhCCHHHHHHHHHHHHHh
Confidence 00124567888898765443 45579999999999999999
Q ss_pred cCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcc
Q 000867 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1247)
Q Consensus 161 ~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~ 231 (1247)
.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|++++|+.+++.+.+|++++|++|++++.|++.
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPE-Q-GITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999998754 2 456777899999999999999999999999999754
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-31 Score=293.80 Aligned_cols=192 Identities=23% Similarity=0.284 Sum_probs=154.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV------PQRTAAYISQHD--VHIGEMTVRETLAFSA 72 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~i~yv~Q~~--~~~~~lTv~e~l~f~~ 72 (1247)
+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++ .+.+.+||+||+.+..
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 115 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPL 115 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHH
Confidence 47999999999999999999999987 999999998775322 235799999986 4567899999998753
Q ss_pred hccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCc-ccccccccCCccccccccccc
Q 000867 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE-VCDDTLVGDEMVRGISGGQKK 151 (1247)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrq 151 (1247)
.... . .. ..+....++++++.+||. ...+ +.+..|||||||
T Consensus 116 ~~~~---~------~~------------------------~~~~~~~~~~~l~~~gl~~~~~~-----~~~~~LSgGe~q 157 (265)
T TIGR02769 116 RHLT---S------LD------------------------ESEQKARIAELLDMVGLRSEDAD-----KLPRQLSGGQLQ 157 (265)
T ss_pred HHhc---C------CC------------------------HHHHHHHHHHHHHHcCCChhhhh-----CChhhCCHHHHH
Confidence 2110 0 00 001122356778889985 3333 445679999999
Q ss_pred hhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcc
Q 000867 152 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1247)
Q Consensus 152 RvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~ 231 (1247)
||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+...+..++|++++|++|++++.|+++
T Consensus 158 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (265)
T TIGR02769 158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA-FGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHH
Confidence 999999999999999999999999999999999999987653 3566777899999999999999999999999999987
Q ss_pred hHH
Q 000867 232 LVL 234 (1247)
Q Consensus 232 ~~~ 234 (1247)
++.
T Consensus 237 ~~~ 239 (265)
T TIGR02769 237 QLL 239 (265)
T ss_pred HHc
Confidence 764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-31 Score=253.40 Aligned_cols=181 Identities=25% Similarity=0.329 Sum_probs=152.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc-------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-------PQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 2 ~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~-------~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1247)
++|||||||||||||-+++|+-.|+ +|+|.+.|+++.... ..+.+|+|+|.-.++|++|..||+...+.+
T Consensus 39 vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL 115 (228)
T COG4181 39 VAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLEL 115 (228)
T ss_pred EEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhh
Confidence 6999999999999999999999987 999999999875432 136899999999999999999999987776
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
++-+.+ +......+.|+.+||.+-.+ ..+.+|||||+|||+
T Consensus 116 ~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl~-----HyP~qLSGGEQQRVA 156 (228)
T COG4181 116 RGESSA----------------------------------DSRAGAKALLEAVGLGKRLT-----HYPAQLSGGEQQRVA 156 (228)
T ss_pred cCCccc----------------------------------cHHHHHHHHHHHhCcccccc-----cCccccCchHHHHHH
Confidence 542110 11223456789999975432 356789999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEE
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVY 226 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~ 226 (1247)
||||+...|+|||-||||-.||.++..+|.+.+..+.++ .+++.+.++|+. .....|||.+-|.+|+++.
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre-~G~TlVlVTHD~-~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE-RGTTLVLVTHDP-QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh-cCceEEEEeCCH-HHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999988765 577788888876 5778899999999999874
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-31 Score=288.22 Aligned_cols=191 Identities=24% Similarity=0.384 Sum_probs=156.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++....+..
T Consensus 27 ~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~- 102 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVD- 102 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCC-
Confidence 37999999999999999999999987 999999998875422 2467999999998898999999998864321100
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
..+....++++++.+||.+..++. ++.||||||||++||||+
T Consensus 103 ---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral 144 (235)
T cd03299 103 ---------------------------------KKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIARAL 144 (235)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHHHHH
Confidence 001112345678889997655544 457999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
+.+|++++|||||+|||+.++..+.+.++++... .++++++++|+.+++.+.+|++++|++|++++.|+.+++.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~-~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKE-FGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999987553 2556777899999999999999999999999999877654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=335.52 Aligned_cols=196 Identities=27% Similarity=0.393 Sum_probs=159.3
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++|+|++++++.. +++++|+|+|++|+|||++||+||||||||||+++|+|..++ .+|+|.+||.|
T Consensus 477 ~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 544 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVP 544 (711)
T ss_pred CeEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEE
Confidence 469999999998521 124699999999999999999999999999999999998763 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 825 (1247)
+++ ..+++.++||+|++.+++ .|++||+.++. + +.+ ++.+.++++..++.+. .|+.+|.
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige- 613 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL----T-DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGE- 613 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC----C-CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccC-
Confidence 754 446778999999998886 69999998652 1 222 2346677777777543 3566654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.+.+||||||||++||||++++|+|++||||||+||++++..+.+ .. ..+++|+|+++|+++ ..+..|+
T Consensus 614 ~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~ 682 (711)
T TIGR00958 614 KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQ 682 (711)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCE
Confidence 346799999999999999999999999999999999999999988 22 235899999999985 4566777
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=291.12 Aligned_cols=198 Identities=22% Similarity=0.255 Sum_probs=154.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCC--CceeeEEEECCccCCCC---cccceEEEeccccccCCCCCHHHHHHHHHhcc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSK--LKFSGRVTYNGHGMDEF---VPQRTAAYISQHDVHIGEMTVRETLAFSARCQ 75 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~--~~~~G~v~~~g~~~~~~---~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~ 75 (1247)
+++|+||||||||||+++|+|+.+|. ...+|+|.++|.++... ..++.++|++|++.+++.+||+||+.++....
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~ 110 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLN 110 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhc
Confidence 47999999999999999999998741 12389999999877532 22467999999988888999999999864321
Q ss_pred CCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHH
Q 000867 76 GVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTT 155 (1247)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsi 155 (1247)
.... . ..+..+.++++++.+||.+..... -++.+.+|||||||||+|
T Consensus 111 ~~~~--~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~l 157 (250)
T PRK14247 111 RLVK--S------------------------------KKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQQRLCI 157 (250)
T ss_pred cccC--C------------------------------HHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHHHHHHH
Confidence 1000 0 001122356678888885421111 134566899999999999
Q ss_pred HHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 156 A~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++++++++|+.+++.+.+|++++|++|++++.|+.+++.
T Consensus 158 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 158 ARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK---DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 9999999999999999999999999999999998732 456777899999999999999999999999999887754
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=293.61 Aligned_cols=198 Identities=27% Similarity=0.384 Sum_probs=161.7
Q ss_pred CCCCcEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEE
Q 000867 672 PFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI 751 (1247)
Q Consensus 672 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i 751 (1247)
....+.++|+|+++.++ .++++|+||||++.||+.+|++||||+||||++++|.+.-+ ..+|.|.|
T Consensus 532 ~~~~G~i~fsnvtF~Y~------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~i 597 (790)
T KOG0056|consen 532 KVTQGKIEFSNVTFAYD------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSITI 597 (790)
T ss_pred cccCCeEEEEEeEEecC------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEEE
Confidence 34567899999999986 34689999999999999999999999999999999997654 45899999
Q ss_pred cCccCCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHH--HHHH-HHcCCCccccccccCC
Q 000867 752 SGYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFI--EEIM-ELVELNPLRQSLVGLP 825 (1247)
Q Consensus 752 ~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v--~~~l-~~l~l~~~~~~~~g~~ 825 (1247)
||++++. ...|+.+|.||||..++. -|+..|+.|+- | +.+.++..+.. ..+- +.++.-+-.++.||..
T Consensus 598 DgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGER 671 (790)
T KOG0056|consen 598 DGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGER 671 (790)
T ss_pred cCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhc
Confidence 9999754 456778999999998886 48888888752 2 22333322211 1111 3466777778888865
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCCh
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 891 (1247)
+. .|||||||||+|||+++++|.|++|||+||.||..+.+.|+..|.+++. ++|.|+++|+.|.
T Consensus 672 GL-kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST 735 (790)
T KOG0056|consen 672 GL-KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST 735 (790)
T ss_pred cc-ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh
Confidence 43 5999999999999999999999999999999999999999999999874 7999999999874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=336.42 Aligned_cols=189 Identities=24% Similarity=0.323 Sum_probs=149.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 2 ~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+||+|+||||||||+|+|+|+++|+ +|+|.+||+++++.. .++.++||+|++.+|+ .|++|||.++.. .
T Consensus 482 vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~-~--- 553 (686)
T TIGR03797 482 VAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAP-L--- 553 (686)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCC-C---
Confidence 7999999999999999999999987 999999999987543 3578999999988775 599999988521 0
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
+ ..++.+..+ .+. .++.++ .++++.||.+|++ +.+||||||||++||||
T Consensus 554 ---~-~e~i~~al~---------------~a~---------l~~~i~--~lp~G~dt~ige~-G~~LSGGQrQRialARA 602 (686)
T TIGR03797 554 ---T-LDEAWEAAR---------------MAG---------LAEDIR--AMPMGMHTVISEG-GGTLSGGQRQRLLIARA 602 (686)
T ss_pred ---C-HHHHHHHHH---------------HcC---------cHHHHH--hccccccccccCC-CCCCCHHHHHHHHHHHH
Confidence 0 001111110 000 111122 3688899999975 46899999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
|+++|+|++||||||+||+.++.++.+.+++. ++ |+++++|.. +..+.+|+|++|++|+++++|+++++.+
T Consensus 603 ll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~-T~IiItHr~-~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 603 LVRKPRILLFDEATSALDNRTQAIVSESLERL----KV-TRIVIAHRL-STIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CC-eEEEEecCh-HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999874 24 555577766 4556799999999999999999998763
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=292.95 Aligned_cols=195 Identities=17% Similarity=0.262 Sum_probs=151.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCC--ceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKL--KFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~--~~~G~v~~~g~~~~~~-----~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+||||||||||+++|+|..+|.. ..+|+|.++|+++... ..++.++|++|++.+++ +|++||+.++.+
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~ 118 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPR 118 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHH
Confidence 479999999999999999999987410 1389999999876421 12457999999988777 899999998643
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
..+.. . .+.+..++++++.+|+....... -++.+..|||||||||
T Consensus 119 ~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 119 IHGAN----------K------------------------KDLDGVVENALRSAALWDETSDR-LKSPALSLSGGQQQRL 163 (258)
T ss_pred HcCCC----------H------------------------HHHHHHHHHHHHHcCCCcchhhh-hcCChhhCCHHHHHHH
Confidence 21100 0 00112245677888774211111 1345668999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+|||||+.+|++++|||||+|||+.++..+.+.++++.+ +++|++++|+.+++.++||++++|++|++++.|+++++
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK---DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh---CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998742 36677789999999999999999999999999988765
Q ss_pred H
Q 000867 234 L 234 (1247)
Q Consensus 234 ~ 234 (1247)
.
T Consensus 241 ~ 241 (258)
T PRK14268 241 F 241 (258)
T ss_pred h
Confidence 3
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=291.85 Aligned_cols=195 Identities=29% Similarity=0.429 Sum_probs=146.3
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.+.. .+++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~~----------~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPS----------RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCC----------CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehhh
Confidence 46777766531 0124699999999999999999999999999999999998653 47999999987532
Q ss_pred ---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCCCCC
Q 000867 759 ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS-------LVGLPGES 828 (1247)
Q Consensus 759 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~g~~~~~ 828 (1247)
...++.++|++|++.+++ .|++|++.+....+ ..+. .++.++..++.+..+. ... ...+
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEE----VEEAAKKANIHDFIMSLPDGYDTLVG-ERGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHH----HHHHHHHcChHHHHHhhccccceeec-cCCc
Confidence 223456899999988776 69999997643211 1111 1222333333221111 111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. +|+|||+++|++.. + +..|+
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~ 206 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADL 206 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCE
Confidence 799999999999999999999999999999999999999999999886 78999999999864 2 35666
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-31 Score=292.77 Aligned_cols=196 Identities=20% Similarity=0.239 Sum_probs=150.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCC--ceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKL--KFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~--~~~G~v~~~g~~~~~~-----~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+||||||||||+++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++.+++ +||+||+.++..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~ 113 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPK 113 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHH
Confidence 479999999999999999999998621 1389999999876421 22467999999987774 899999998643
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
..+. .. ..+.++.+++.++.+++.+... ..-+..++.|||||||||
T Consensus 114 ~~~~---~~------------------------------~~~~~~~~~~~l~~~~l~~~l~-~~~~~~~~~LSgG~~qrv 159 (254)
T PRK14273 114 IHGT---KD------------------------------KKKLDEIVEQSLKKSALWNEVK-DKLNTNALSLSGGQQQRL 159 (254)
T ss_pred hcCC---CC------------------------------HHHHHHHHHHHHHHhCCchhhH-HHHhCCcccCCHHHHHHH
Confidence 2110 00 0001123455667777632100 011334568999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+|||+|+.+|++++|||||+|||+.++..+.+.|+++. . +.++++++|+.+++.+.+|++++|++|+++..|+++++
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 160 CIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK--E-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999874 2 35677789999999999999999999999999988776
Q ss_pred H
Q 000867 234 L 234 (1247)
Q Consensus 234 ~ 234 (1247)
.
T Consensus 237 ~ 237 (254)
T PRK14273 237 F 237 (254)
T ss_pred H
Confidence 4
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=332.22 Aligned_cols=193 Identities=21% Similarity=0.361 Sum_probs=151.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 2 ~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
++|+||||||||||+++|+|+++|+ +|+|.+||.++++.. .++.++||||++.+|+ .|++|||.++..
T Consensus 372 ~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~----- 442 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYART----- 442 (582)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCCC-----
Confidence 7999999999999999999999997 999999999876543 3578999999988776 599999987521
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
+.++ .+...+++... -.++.++ .|+++.||.+|++ +.+||||||||++||||
T Consensus 443 ~~~~-------------------~~~i~~al~~~------~l~~~i~--~lp~Gldt~ig~~-g~~LSGGqrQRi~LARa 494 (582)
T PRK11176 443 EQYS-------------------REQIEEAARMA------YAMDFIN--KMDNGLDTVIGEN-GVLLSGGQRQRIAIARA 494 (582)
T ss_pred CCCC-------------------HHHHHHHHHHh------CcHHHHH--hcccccCceeCCC-CCcCCHHHHHHHHHHHH
Confidence 0000 00000000000 0112222 3788899999975 56899999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
|+++|+|++||||||+||+.++..+.+.+++.. . ++++++++|.. +..+.||+|++|++|++++.|+++++.+
T Consensus 495 ll~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~-~~tvI~VtHr~-~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 495 LLRDSPILILDEATSALDTESERAIQAALDELQ--K-NRTSLVIAHRL-STIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--C-CCEEEEEecch-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999998753 2 34555567766 5667899999999999999999998864
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=257.07 Aligned_cols=186 Identities=23% Similarity=0.328 Sum_probs=156.1
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc---ccccceEEEeccCCCCCCC
Q 000867 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPF 777 (1247)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~ 777 (1247)
.+..+|+|+|+.+++||..+|.||||||||||+++++...++ .+|.+++.|.+.+. ..++..++||.|.+.+++.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp--~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC--CCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 345699999999999999999999999999999999988763 58999999998753 5678889999999999985
Q ss_pred cCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000867 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 857 (1247)
Q Consensus 778 ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpt 857 (1247)
||.+|+.|.-.+|... ++ .....+.++.+++.+..-+. ....||||||||.+|+|-|..-|+||+|||||
T Consensus 92 -tVeDNlifP~~~r~rr-~d----r~aa~~llar~~l~~~~L~k----~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 92 -TVEDNLIFPWQIRNRR-PD----RAAALDLLARFALPDSILTK----NITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred -chhhccccchHHhccC-CC----hHHHHHHHHHcCCchhhhcc----hhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 9999999987766322 22 23355788888886543221 13469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCEEEEEeccCChHHHHhhhc
Q 000867 858 SGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 858 sgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|.||..+++.|-++|.++. .+++.++-++|++.. -...+|+
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k 203 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADK 203 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH-Hhhhhhe
Confidence 9999999999999999987 568999999999974 3467777
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=292.83 Aligned_cols=190 Identities=27% Similarity=0.367 Sum_probs=153.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-----cccceEEEeccccc-cCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDV-HIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-----~~~~~i~yv~Q~~~-~~~~lTv~e~l~f~~~~ 74 (1247)
+++|+||||||||||+++|+|.++|. +|+|.++|+++... ..++.++|++|++. .+...||.||+.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~ 106 (275)
T PRK13639 30 MVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLN 106 (275)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHH
Confidence 47999999999999999999999887 99999999887421 12467999999852 34457999999875321
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
.+. . + .+....+.++++.+||.+..++. +..||||||||++
T Consensus 107 ~~~----~------~------------------------~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~Gq~qrv~ 147 (275)
T PRK13639 107 LGL----S------K------------------------EEVEKRVKEALKAVGMEGFENKP-----PHHLSGGQKKRVA 147 (275)
T ss_pred cCC----C------H------------------------HHHHHHHHHHHHHCCCchhhcCC-----hhhCCHHHHHHHH
Confidence 100 0 0 01112356688999997655544 5579999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||||+.+|++++|||||+|||+.++..+.+.++++.+ . +.+|+.++|+.+.+.++||++++|++|++++.|+++++.
T Consensus 148 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~-~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-E-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998754 3 566777899999999999999999999999999988764
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=287.52 Aligned_cols=185 Identities=24% Similarity=0.271 Sum_probs=149.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC--cccceEEEec-cccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--VPQRTAAYIS-QHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~i~yv~-Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|++.... ..++.++|++ |++.+++.+|++||+.+.....+.
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~ 125 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDL 125 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999887 99999999865321 2345799997 556777889999999886432210
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
. .++....++.+++.+||++..++.+ ..||||||||++||+
T Consensus 126 ~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~ 166 (236)
T cd03267 126 P----------------------------------PARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAA 166 (236)
T ss_pred C----------------------------------HHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHH
Confidence 0 0011123456788889987666554 469999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEec
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1247)
Q Consensus 158 al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G 228 (1247)
||+.+|++++|||||+|||+.++..+.+.|+++.+. ++.+|++++|+.+++.+++|++++|++|++++.|
T Consensus 167 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 167 ALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE-RGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999987653 3556777899999999999999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=316.75 Aligned_cols=103 Identities=21% Similarity=0.327 Sum_probs=85.1
Q ss_pred HHHHhCCcccccccccCCccccccccccchhHHHHHHhcCC--eEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEE
Q 000867 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVI 200 (1247)
Q Consensus 123 ~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~~~p--~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv 200 (1247)
.|..+||.... -++.+.+|||||||||.||++|..+| ++++|||||+|||+.....+++.|+++.+ . +.+|+
T Consensus 470 ~L~~vgL~~l~----l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~-G~TVI 543 (924)
T TIGR00630 470 FLIDVGLDYLT----LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-L-GNTVI 543 (924)
T ss_pred hHhhccccccc----cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-C-CCEEE
Confidence 36777885421 14566789999999999999999986 89999999999999999999999999854 3 55666
Q ss_pred EecCCChhHHhhcccEEEe------cCCcEEEecCcch
Q 000867 201 SLLQPAPETYDLFDDIILL------SDAQIVYQGPREL 232 (1247)
Q Consensus 201 ~~~~~~~~~~~~~D~v~~l------~~G~v~~~G~~~~ 232 (1247)
+++|+.+.+ ..||+|++| ++|++++.|++++
T Consensus 544 vVeHd~~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~e 580 (924)
T TIGR00630 544 VVEHDEETI-RAADYVIDIGPGAGIHGGEVVASGTPEE 580 (924)
T ss_pred EEECCHHHH-hhCCEEEEecccccCCCCEEeeccCHHH
Confidence 688887766 489999999 8999998886544
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-31 Score=292.43 Aligned_cols=196 Identities=21% Similarity=0.286 Sum_probs=150.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCC--CCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD--SKLKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~--~~~~~~G~v~~~g~~~~~~-----~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+|||||||||||++|+|..+ |....+|+|.++|+++... ..++.++|++|++.+++ .||+||+.++..
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~ 112 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLR 112 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHH
Confidence 479999999999999999999864 1001389999999877431 12467999999988777 599999998653
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
..+... . +..++.+++.++.+||.+...+.. ++.+..|||||||||
T Consensus 113 ~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv 158 (253)
T PRK14242 113 VNGVKD---------K------------------------AYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRL 158 (253)
T ss_pred HcCCCC---------H------------------------HHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHH
Confidence 221000 0 001123455677777753211111 345668999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+|||||+.+|++++|||||+|||+.++..+.+.|+++. . +.+|++++|+.+++.+++|+|++|++|++++.|+++++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~--~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A--RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c--CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999873 2 35677789999999999999999999999999987765
Q ss_pred H
Q 000867 234 L 234 (1247)
Q Consensus 234 ~ 234 (1247)
.
T Consensus 236 ~ 236 (253)
T PRK14242 236 F 236 (253)
T ss_pred H
Confidence 3
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=286.86 Aligned_cols=182 Identities=25% Similarity=0.304 Sum_probs=146.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+|+.||+.+...
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~ 114 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPAL 114 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHH
Confidence 47999999999999999999999887 9999999987754321 2479999999888888999999988543
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
.... . ..+.+..++++++.+||.+..+. .+..||||||||+
T Consensus 115 ~~~~----~------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Ge~qrl 155 (228)
T PRK10584 115 LRGE----S------------------------------SRQSRNGAKALLEQLGLGKRLDH-----LPAQLSGGEQQRV 155 (228)
T ss_pred hcCC----C------------------------------HHHHHHHHHHHHHHcCCHhHhhC-----ChhhCCHHHHHHH
Confidence 2110 0 00112235677889999765444 3457999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEE
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVY 226 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~ 226 (1247)
+|||||+.+|++++|||||+|||+.++..+.+.++++++.. +.+|++++|+.+.+ ..+|++++|++|++++
T Consensus 156 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 156 ALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH-GTTLILVTHDLQLA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999876533 45666688888776 5599999999999875
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=285.81 Aligned_cols=185 Identities=24% Similarity=0.388 Sum_probs=144.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccC--CCCCHHHHHHHHHhccCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHI--GEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~--~~lTv~e~l~f~~~~~~~~ 78 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|+++. ..++.++|++|++.+. ..+||+||+.++.....
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~-- 99 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHK-- 99 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH--HHHhheEEeccccccccCCCCcHHHHHHhcccccc--
Confidence 47999999999999999999999887 999999998654 2346799999987653 34799999987532110
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
..+... ..+.+..++++++.+||++..++ .+..||||||||++||||
T Consensus 100 ~~~~~~----------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~a 146 (213)
T cd03235 100 GLFRRL----------------------------SKADKAKVDEALERVGLSELADR-----QIGELSGGQQQRVLLARA 146 (213)
T ss_pred ccccCC----------------------------CHHHHHHHHHHHHHcCCHHHHhC-----CcccCCHHHHHHHHHHHH
Confidence 000000 00011235677888999755444 445799999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEec
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G 228 (1247)
|+.+|++++|||||+|||+.++..+.+.++++++ .++++++++|+.+++.+.+|++++|++| +++.|
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999998764 3566777899999999999999999886 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-31 Score=290.66 Aligned_cols=189 Identities=25% Similarity=0.320 Sum_probs=152.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCC---------CcccceEEEeccccccCCCCCHHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE---------FVPQRTAAYISQHDVHIGEMTVRETLAFS 71 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~---------~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~ 71 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|+++.. ...++.++|++|++.+++.+||.||+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~ 106 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEA 106 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHH
Confidence 47999999999999999999999887 9999999987521 01245799999999899999999999753
Q ss_pred H-hccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCcccccccccc
Q 000867 72 A-RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQK 150 (1247)
Q Consensus 72 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 150 (1247)
. ...+.. ..+....++++++.+||++..+. .+..||||||
T Consensus 107 ~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~ 147 (242)
T PRK11124 107 PCRVLGLS----------------------------------KDQALARAEKLLERLRLKPYADR-----FPLHLSGGQQ 147 (242)
T ss_pred HHHHcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHH
Confidence 2 111100 00011235677888999755443 4557999999
Q ss_pred chhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCc
Q 000867 151 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1247)
Q Consensus 151 qRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~ 230 (1247)
||++||||++.+|++++|||||+|||+.++..+.+.++++.+ .++++++++|+..++.+.+|++++|++|++++.|++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~ 225 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE--TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999998743 356677789999999999999999999999999987
Q ss_pred chH
Q 000867 231 ELV 233 (1247)
Q Consensus 231 ~~~ 233 (1247)
++.
T Consensus 226 ~~~ 228 (242)
T PRK11124 226 SCF 228 (242)
T ss_pred HHh
Confidence 653
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=330.35 Aligned_cols=192 Identities=20% Similarity=0.265 Sum_probs=150.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++.. .++.++||+|++.+|+. |++|||.++...
T Consensus 369 ~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~~--- 441 (592)
T PRK10790 369 FVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRDI--- 441 (592)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCCC---
Confidence 37999999999999999999999997 999999999886543 35789999999888875 999999985210
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
+ ..++.+.. +.+ -.++.++ .|+++.||.+|+. +.+||||||||++|||
T Consensus 442 ----~-d~~i~~a~---------------~~~---------gl~~~i~--~lp~Gldt~i~e~-g~~LSGGqrQRialAR 489 (592)
T PRK10790 442 ----S-EEQVWQAL---------------ETV---------QLAELAR--SLPDGLYTPLGEQ-GNNLSVGQKQLLALAR 489 (592)
T ss_pred ----C-HHHHHHHH---------------HHc---------CcHHHHH--hccccccccccCC-CCCCCHHHHHHHHHHH
Confidence 0 00010000 000 0111222 2678899999974 5579999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 158 al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
||+++|+|++||||||+||+.++..|.+.+++..+ ++ ++++++|.. +....+|+|++|++|++++.|+++++.+
T Consensus 490 aLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~-tvIivtHr~-~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 490 VLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HT-TLVVIAHRL-STIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CC-EEEEEecch-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999988642 34 455567765 5566799999999999999999999863
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-31 Score=327.93 Aligned_cols=197 Identities=26% Similarity=0.356 Sum_probs=161.6
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|++++++. ++.+|+|+|++++|||+++|+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~ 398 (588)
T PRK13657 333 GAVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTD 398 (588)
T ss_pred CeEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEE
Confidence 46999999998741 13599999999999999999999999999999999998763 47999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 825 (1247)
... ..+++.++|++|++.+++ -|++||+.++. + +.++ +.++++++.+++.+. .|+.+|.
T Consensus 399 i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~- 467 (588)
T PRK13657 399 IRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR----P-DATD----EEMRAAAERAQAHDFIERKPDGYDTVVGE- 467 (588)
T ss_pred hhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC----C-CCCH----HHHHHHHHHhCHHHHHHhCcccccchhcC-
Confidence 654 355678999999998886 59999997641 1 2222 235566666665442 3555654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhcC
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEG 900 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 900 (1247)
.++.||||||||++|||||+++|+|++||||||+||+.++..+.+.|++.. +++|+|++||+++ ..+..|+.
T Consensus 468 ~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~i 539 (588)
T PRK13657 468 RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRI 539 (588)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEE
Confidence 345799999999999999999999999999999999999999999998874 4799999999984 56778873
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=291.13 Aligned_cols=198 Identities=19% Similarity=0.272 Sum_probs=153.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCC--CceeeEEEECCccCCC--C---cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSK--LKFSGRVTYNGHGMDE--F---VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~--~~~~G~v~~~g~~~~~--~---~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+||||||||||+++|+|.++|+ ...+|+|.++|+++.. . ..++.++|++|++.+++.+||+||+.++..
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 111 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVK 111 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHH
Confidence 47999999999999999999998762 1238999999988741 1 224579999999988989999999988653
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
....... ..+....++++++.+||....... -++.+..||||||||+
T Consensus 112 ~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv 158 (253)
T PRK14267 112 LNGLVKS--------------------------------KKELDERVEWALKKAALWDEVKDR-LNDYPSNLSGGQRQRL 158 (253)
T ss_pred hcCccCC--------------------------------HHHHHHHHHHHHHHcCCccchhhh-hccChhhCCHHHHHHH
Confidence 2110000 000111245567777774321111 1345678999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|++++|+.+++..++|+|++|++|++++.|+++++
T Consensus 159 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998743 3 5677789999999999999999999999999988765
Q ss_pred H
Q 000867 234 L 234 (1247)
Q Consensus 234 ~ 234 (1247)
.
T Consensus 236 ~ 236 (253)
T PRK14267 236 F 236 (253)
T ss_pred H
Confidence 4
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-31 Score=289.35 Aligned_cols=186 Identities=22% Similarity=0.332 Sum_probs=151.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC---cccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF---VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++... ..++.++|++|++.+++ .||+||+.++.....
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~- 105 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG- 105 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC-
Confidence 47999999999999999999999887 99999999876432 22467999999988776 699999987432110
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCc-ccccccccCCccccccccccchhHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE-VCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
. ....++++++.+||+ +..+ +.+..||||||||++||
T Consensus 106 -~------------------------------------~~~~~~~~l~~~~l~~~~~~-----~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 106 -E------------------------------------KNVDVEYYLSIVGLNKEYAT-----RDVKNLSGGEAQRVSIA 143 (241)
T ss_pred -c------------------------------------HHHHHHHHHHHcCCCHHHhh-----CCcccCCHHHHHHHHHH
Confidence 0 001245678888885 2333 34567999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
||++.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++.+.+|+|++|++|+++..|+++++.
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 144 RTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK-MNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999987553 3456777899999999999999999999999999887653
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=317.51 Aligned_cols=199 Identities=24% Similarity=0.290 Sum_probs=159.1
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcC-----
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG----- 753 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g----- 753 (1247)
+++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~ 68 (520)
T TIGR03269 2 EVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK 68 (520)
T ss_pred EEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccc
Confidence 5678887663 2459999999999999999999999999999999999741013479999872
Q ss_pred ------------------ccCC----------c---ccccceEEEeccC-CCCCCCcCHHHHHHHHhhccCCCCCCHHHH
Q 000867 754 ------------------YPKK----------Q---ETFTRISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETQ 801 (1247)
Q Consensus 754 ------------------~~~~----------~---~~~~~~~~~v~q~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 801 (1247)
.++. . ...++.++|++|+ +.+++.+||+|++.+..... ..+.++.
T Consensus 69 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~ 145 (520)
T TIGR03269 69 CGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEA 145 (520)
T ss_pred ccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence 1110 0 1134568999997 67888899999998865432 1233444
Q ss_pred HHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q 000867 802 KMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 880 (1247)
Q Consensus 802 ~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~ 880 (1247)
++++.++++.+||.+..+..+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+
T Consensus 146 ~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 146 VGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 567889999999987777665 46999999999999999999999999999999999999999999999865 489
Q ss_pred EEEEEeccCChHHHHhhhc
Q 000867 881 TVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 881 tvi~~~H~~~~~~~~~fd~ 899 (1247)
|||+++|++.. +.+..|+
T Consensus 221 tviivtHd~~~-~~~~~d~ 238 (520)
T TIGR03269 221 SMVLTSHWPEV-IEDLSDK 238 (520)
T ss_pred EEEEEeCCHHH-HHHhcCE
Confidence 99999999863 4455666
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=277.91 Aligned_cols=168 Identities=26% Similarity=0.304 Sum_probs=138.5
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|.....+.+|+|.+||.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~ 68 (200)
T cd03217 2 EIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68 (200)
T ss_pred eEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence 5677776653 235999999999999999999999999999999999974211357999999988653
Q ss_pred c---cc-cceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000867 759 E---TF-TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1247)
Q Consensus 759 ~---~~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 834 (1247)
. .. ++.++|++|++.+++..|+++++. .. .+.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~~-----~~~LS~G~ 109 (200)
T cd03217 69 LPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------YV-----NEGFSGGE 109 (200)
T ss_pred CCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------hc-----cccCCHHH
Confidence 2 12 345899999988888888877650 00 13599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHH-hhhc
Q 000867 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE-SFDE 899 (1247)
Q Consensus 835 r~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~-~fd~ 899 (1247)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+ ..|+
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~ 174 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDR 174 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCE
Confidence 99999999999999999999999999999999999999998777899999999986 3433 4676
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=274.82 Aligned_cols=162 Identities=27% Similarity=0.445 Sum_probs=136.1
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.+.. .++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~~~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~ 68 (178)
T cd03247 2 SINNVSFSYPE-----------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGVPVSD 68 (178)
T ss_pred EEEEEEEEeCC-----------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCEEHHH
Confidence 56788776531 113599999999999999999999999999999999998653 47999999986532
Q ss_pred --ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000867 759 --ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1247)
Q Consensus 759 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~ 836 (1247)
..+++.++|++|++.+++ .|++||+ ...|||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~q 105 (178)
T cd03247 69 LEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQ 105 (178)
T ss_pred HHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHH
Confidence 234567899999987775 6888876 1359999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 837 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|++|||||+.+|++++|||||+|||+.++..+++.|+++. +++|||+++|++.. + +..|+
T Consensus 106 rv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~ 165 (178)
T cd03247 106 RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDK 165 (178)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999885 58999999999864 3 34555
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-31 Score=293.23 Aligned_cols=201 Identities=22% Similarity=0.301 Sum_probs=156.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC--------cccceEEEeccccccCCCCCHHHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF--------VPQRTAAYISQHDVHIGEMTVRETLAFSA 72 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~--------~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~ 72 (1247)
+++|+||||||||||+++|+|.++|+...+|+|.++|+++... ..++.++|++|++.+++.+||+||+.++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 111 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA 111 (262)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhh
Confidence 4799999999999999999999987522369999999876431 11356999999988899899999998753
Q ss_pred hccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccch
Q 000867 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKR 152 (1247)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 152 (1247)
... .. .... .... ...+.+..++++++.+||++..+. .+..||||||||
T Consensus 112 ~~~-----~~----~~~~--~~~~---------------~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 160 (262)
T PRK09984 112 LGS-----TP----FWRT--CFSW---------------FTREQKQRALQALTRVGMVHFAHQ-----RVSTLSGGQQQR 160 (262)
T ss_pred ccc-----cc----chhh--hccc---------------ccHHHHHHHHHHHHHcCCHHHHhC-----CccccCHHHHHH
Confidence 210 00 0000 0000 000112345678899999765544 445799999999
Q ss_pred hHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcch
Q 000867 153 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPREL 232 (1247)
Q Consensus 153 vsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~ 232 (1247)
|+|||||+.+|++++|||||+|||..++..+.+.|+++.+. .+++|++++|+.+++...+|++++|++|++++.|++++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN-DGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred HHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999997653 35677778999999999999999999999999998765
Q ss_pred H
Q 000867 233 V 233 (1247)
Q Consensus 233 ~ 233 (1247)
+
T Consensus 240 ~ 240 (262)
T PRK09984 240 F 240 (262)
T ss_pred h
Confidence 3
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=322.52 Aligned_cols=198 Identities=30% Similarity=0.438 Sum_probs=158.6
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|++++++. +++.+|+|+|++++|||+++|+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 315 ~~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~ 381 (544)
T TIGR01842 315 GHLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP--TSGSVRLDGAD 381 (544)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEe
Confidence 46999999998741 124699999999999999999999999999999999998763 47999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-------LRQSLVGLP 825 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~ 825 (1247)
... ..+++.++||+|++.+++. |++||+.+.. .+.+.++ ++++++..++.+ -.|+.+|.
T Consensus 382 i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~l~~gl~t~~~~- 450 (544)
T TIGR01842 382 LKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPEK----IIEAAKLAGVHELILRLPDGYDTVIGP- 450 (544)
T ss_pred hhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHHH----HHHHHHHhChHHHHHhCccccccccCC-
Confidence 653 3456789999999998875 9999997432 1222222 334444444332 22555553
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
...+||||||||++|||||+++|++++|||||||||++++..+.+.|+++..+|+|+|+++|+++ ..+.+|+
T Consensus 451 ~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~ 522 (544)
T TIGR01842 451 GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDK 522 (544)
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCE
Confidence 34679999999999999999999999999999999999999999999988656899999999995 4566777
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-31 Score=295.99 Aligned_cols=193 Identities=24% Similarity=0.301 Sum_probs=154.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDV-HIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1247)
+++|+||||||||||+++|+|.++|+...+|+|.++|+++.... .++.++|++|++. .++..||+||+.|.....+
T Consensus 35 ~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~ 114 (282)
T PRK13640 35 WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRA 114 (282)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCC
Confidence 47999999999999999999999886112399999999875422 2457999999864 5778899999988543211
Q ss_pred CCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHH
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA 156 (1247)
. . .++.++.++++++.+||.+..+ +.++.||||||||++||
T Consensus 115 ~----------~------------------------~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LS~G~~qrv~la 155 (282)
T PRK13640 115 V----------P------------------------RPEMIKIVRDVLADVGMLDYID-----SEPANLSGGQKQRVAIA 155 (282)
T ss_pred C----------C------------------------HHHHHHHHHHHHHHCCChhHhc-----CCcccCCHHHHHHHHHH
Confidence 0 0 0111224567889999976544 44568999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 157 ~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+.+ ..||++++|++|++++.|+++++.
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK-NNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999987653 355677788888887 579999999999999999987764
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-31 Score=285.29 Aligned_cols=180 Identities=21% Similarity=0.318 Sum_probs=146.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHhc-
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSARC- 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~-----~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~- 74 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+|++||+.++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~ 104 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV 104 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh
Confidence 47999999999999999999999887 99999999876421 1246799999999888889999999885321
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhH
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
++. . ..+....++++++.+|+++..+. .+..||||||||++
T Consensus 105 ~~~----~------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~ 145 (213)
T cd03262 105 KGM----S------------------------------KAEAEERALELLEKVGLADKADA-----YPAQLSGGQQQRVA 145 (213)
T ss_pred cCC----C------------------------------HHHHHHHHHHHHHHcCCHhHhhh-----CccccCHHHHHHHH
Confidence 100 0 00111234667888898765443 45579999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcE
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQI 224 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v 224 (1247)
|||||+.+|++++|||||+|||+.++..+.+.++++.+ . ++++++++|+.+++.+++|++++|++|++
T Consensus 146 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-E-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999998764 3 45677789999999999999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-31 Score=289.53 Aligned_cols=193 Identities=26% Similarity=0.384 Sum_probs=146.9
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.+. +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~ 67 (236)
T cd03253 2 EFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIRE 67 (236)
T ss_pred EEEEEEEEeC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhh
Confidence 5677776652 12359999999999999999999999999999999999865 347999999987542
Q ss_pred ---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCCCCC
Q 000867 759 ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS-------LVGLPGES 828 (1247)
Q Consensus 759 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~g~~~~~ 828 (1247)
..+++.++|++|+..+++ .|++||+.+... ...... +.+.++..++.+..+. ... ...+
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~ 136 (236)
T cd03253 68 VTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVG-ERGL 136 (236)
T ss_pred CCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchhh-cCCC
Confidence 234567899999988876 699999977531 111111 2233333343322111 111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++.+ |.|||+++|++..- ...|+
T Consensus 137 ~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~--~~~d~ 204 (236)
T cd03253 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTI--VNADK 204 (236)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHH--HhCCE
Confidence 7999999999999999999999999999999999999999999998876 89999999998642 23555
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=287.58 Aligned_cols=197 Identities=23% Similarity=0.273 Sum_probs=152.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC--CCCCceeeEEEECCccCCCCcc----cceEEEeccccccCCCCCHHHHHHHHHhc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKL--DSKLKFSGRVTYNGHGMDEFVP----QRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~--~~~~~~~G~v~~~g~~~~~~~~----~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1247)
+++|+||||||||||+++|+|.. +|+ +|+|.++|+++..... +..++|++|++.+++.+|++||+.+....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~ 104 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNA 104 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHH
Confidence 47999999999999999999995 565 9999999987654221 23489999999999999999999886432
Q ss_pred cCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcc-cccccccCCccc-cccccccch
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEV-CDDTLVGDEMVR-GISGGQKKR 152 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~-~LSGGqrqR 152 (1247)
...... ... ....+....++++++.+||++ ..+. .+. +||||||||
T Consensus 105 ~~~~~~------------------~~~---------~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~LS~G~~qr 152 (243)
T TIGR01978 105 RRSARG------------------EEP---------LDLLDFLKLLKAKLALLGMDEEFLNR-----SVNEGFSGGEKKR 152 (243)
T ss_pred hhcccc------------------ccc---------ccHHHHHHHHHHHHHHcCCchhhccc-----ccccCcCHHHHHH
Confidence 110000 000 000111224567889999973 3333 333 499999999
Q ss_pred hHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhh-cccEEEecCCcEEEecCcc
Q 000867 153 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL-FDDIILLSDAQIVYQGPRE 231 (1247)
Q Consensus 153 vsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~-~D~v~~l~~G~v~~~G~~~ 231 (1247)
|+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .+.+|++++|+.+.+... +|++++|++|++++.|+++
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE--PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 9999999999999999999999999999999999998754 355677789999999888 8999999999999999887
Q ss_pred hHH
Q 000867 232 LVL 234 (1247)
Q Consensus 232 ~~~ 234 (1247)
++.
T Consensus 231 ~~~ 233 (243)
T TIGR01978 231 LAK 233 (243)
T ss_pred Hhc
Confidence 543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=248.55 Aligned_cols=191 Identities=25% Similarity=0.344 Sum_probs=159.6
Q ss_pred EEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCC
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 757 (1247)
+..+++++.+ +..++|.||+++.+.||.+.++||||||||||++.|.-... +.+|+..|.|...+
T Consensus 3 irv~~in~~y-------------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~fd 67 (242)
T COG4161 3 IQLNGINCFY-------------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred eEEccccccc-------------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEecccccc
Confidence 4566666554 34579999999999999999999999999999999976443 34788888775321
Q ss_pred -------c--ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000867 758 -------Q--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1247)
Q Consensus 758 -------~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 828 (1247)
+ ...++.+|.|+|.-.++|.+||.|||.=+ -+|. ...++++.+.+..++++.+.|.+.+|... -
T Consensus 68 ~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enliea-p~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p-----l 140 (242)
T COG4161 68 FSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA-PCRV-LGLSKDQALARAEKLLKRLRLKPYADRYP-----L 140 (242)
T ss_pred cccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhh-hHHH-hCCCHHHHHHHHHHHHHHhccccccccCc-----e
Confidence 1 23567899999999999999999998543 2332 24556677778899999999999999874 3
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCC
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1247)
.|||||+|||+|||||+.+|.+|++||||+.||++-..++++++++++..|.|-++++|.-.
T Consensus 141 hlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~ 202 (242)
T COG4161 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE 202 (242)
T ss_pred ecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh
Confidence 59999999999999999999999999999999999999999999999999999999999753
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-31 Score=297.07 Aligned_cols=191 Identities=20% Similarity=0.270 Sum_probs=151.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCC--------CcccceEEEeccccc-cCCCCCHHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE--------FVPQRTAAYISQHDV-HIGEMTVRETLAFS 71 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~--------~~~~~~i~yv~Q~~~-~~~~lTv~e~l~f~ 71 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. ...++.++|++|++. .+...||+||+.|+
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 115 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG 115 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHH
Confidence 47999999999999999999999887 9999999987631 122457999999863 23346999999886
Q ss_pred HhccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCc-ccccccccCCcccccccccc
Q 000867 72 ARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE-VCDDTLVGDEMVRGISGGQK 150 (1247)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqr 150 (1247)
....+. . .++....++.+++.++|+ ...+ +.+..||||||
T Consensus 116 ~~~~~~----~------------------------------~~~~~~~~~~ll~~~~L~~~~~~-----~~~~~LS~Gq~ 156 (289)
T PRK13645 116 PVNLGE----N------------------------------KQEAYKKVPELLKLVQLPEDYVK-----RSPFELSGGQK 156 (289)
T ss_pred HHHcCC----C------------------------------HHHHHHHHHHHHHHcCCChhHhc-----CChhhCCHHHH
Confidence 432110 0 000112345678888884 3333 44567999999
Q ss_pred chhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCc
Q 000867 151 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1247)
Q Consensus 151 qRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~ 230 (1247)
|||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++.+.||++++|++|++++.|+.
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE-YKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999987653 356677789999999999999999999999999988
Q ss_pred chHH
Q 000867 231 ELVL 234 (1247)
Q Consensus 231 ~~~~ 234 (1247)
+++.
T Consensus 236 ~~~~ 239 (289)
T PRK13645 236 FEIF 239 (289)
T ss_pred HHHh
Confidence 7654
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=337.21 Aligned_cols=190 Identities=23% Similarity=0.301 Sum_probs=149.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 2 ~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
++|+||||||||||+++|+|+++|+ +|+|.+||.++++.. .++.++||+|++.+|+ .|++|||.++..
T Consensus 508 vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~~----- 578 (710)
T TIGR03796 508 VALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWDP----- 578 (710)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCCC-----
Confidence 7999999999999999999999987 999999999886543 4688999999988775 599999987421
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
.. +.+...+++... -.++.++ .++++.||.+|++ +.+||||||||++||||
T Consensus 579 -~~-------------------~~~~i~~al~~~------~l~~~i~--~lp~gl~t~i~e~-G~~LSGGQrQRiaLARa 629 (710)
T TIGR03796 579 -TI-------------------PDADLVRACKDA------AIHDVIT--SRPGGYDAELAEG-GANLSGGQRQRLEIARA 629 (710)
T ss_pred -CC-------------------CHHHHHHHHHHh------CCHHHHH--hCcCcccceeccC-CCCCCHHHHHHHHHHHH
Confidence 00 000111111000 0111222 3778899999965 46899999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
|+++|+|++||||||+||+.++.++.+.+++ . ++|+++++|..+ ....+|+|++|++|++++.|+++++.+
T Consensus 630 ll~~p~iliLDEptS~LD~~te~~i~~~l~~----~-~~T~IiitHrl~-~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 630 LVRNPSILILDEATSALDPETEKIIDDNLRR----R-GCTCIIVAHRLS-TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HhhCCCEEEEECccccCCHHHHHHHHHHHHh----c-CCEEEEEecCHH-HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999975 2 345555777764 456699999999999999999999864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=263.85 Aligned_cols=181 Identities=26% Similarity=0.428 Sum_probs=157.5
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc---ccccceEEEeccCCCCCCC
Q 000867 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPF 777 (1247)
Q Consensus 701 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~ 777 (1247)
+++.+|+++|..|++|.+++|+|||||||||||.++++..+. .+|+|+++|.++.. ....+..+..-|+......
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~--d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK--DSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc--cCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 457899999999999999999999999999999999987663 48999999998754 2345566788898888888
Q ss_pred cCHHHHHHHHhhccCCC--CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000867 778 VTVYESLLYSAWLRLPP--EVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 855 (1247)
Q Consensus 778 ltv~e~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDE 855 (1247)
+||+|-+.|+ |.|. ....++.+..++++++.++|.+..|... .+||||||||.-||+.++++.+.++|||
T Consensus 90 lTV~dLv~FG---RfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDE 161 (252)
T COG4604 90 LTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDE 161 (252)
T ss_pred eEHHHHhhcC---CCcccCCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecC
Confidence 9999999887 3332 2233455677999999999999999886 3699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCCh
Q 000867 856 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSI 891 (1247)
Q Consensus 856 ptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~ 891 (1247)
|.++||..-+..+|+.||+++++ |+||+++.||-+.
T Consensus 162 PLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf 198 (252)
T COG4604 162 PLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF 198 (252)
T ss_pred cccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH
Confidence 99999999999999999999876 9999999999864
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=266.82 Aligned_cols=155 Identities=28% Similarity=0.416 Sum_probs=131.2
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 2 ~~~~~~~~~~------------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~---- 63 (166)
T cd03223 2 ELENLSLATP------------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW--GSGRIGMPEG---- 63 (166)
T ss_pred EEEEEEEEcC------------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCC----
Confidence 5677777652 123599999999999999999999999999999999998653 4799999873
Q ss_pred ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000867 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRL 838 (1247)
Q Consensus 759 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~ 838 (1247)
+.++|++|++.++ ..|++||+.+. . .+.||||||||+
T Consensus 64 ----~~i~~~~q~~~~~-~~tv~~nl~~~---------------------------------~-----~~~LS~G~~~rv 100 (166)
T cd03223 64 ----EDLLFLPQRPYLP-LGTLREQLIYP---------------------------------W-----DDVLSGGEQQRL 100 (166)
T ss_pred ----ceEEEECCCCccc-cccHHHHhhcc---------------------------------C-----CCCCCHHHHHHH
Confidence 5689999998764 57999998642 0 246999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 839 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 839 ~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+|||+|+.+|++++|||||+|||+.++..+.+.++++ ++|+|+++|++.. ....|+
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~--~~~~d~ 156 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSL--WKFHDR 156 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhH--HhhCCE
Confidence 9999999999999999999999999999999999876 5899999999852 345555
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=284.27 Aligned_cols=191 Identities=24% Similarity=0.314 Sum_probs=156.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+||||||||||+++|+|.++|. +|+|.++|+++.... .++.++|++|++..++.+|++||+.++....+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~- 103 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLP- 103 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCC-
Confidence 47999999999999999999999987 899999998775432 2467999999998888899999998865322100
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
.......++.+++.+||.+..++ .+..||||||||++||||+
T Consensus 104 ---------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~lS~G~~qrl~laral 145 (232)
T cd03300 104 ---------------------------------KAEIKERVAEALDLVQLEGYANR-----KPSQLSGGQQQRVAIARAL 145 (232)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHH
Confidence 00011234667888999765554 3457999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
+.+|++++|||||+|||+.++..+.+.++++.+. .+.+|++++|+..++.+.+|++++|++|++++.|+.+++.
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE-LGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999987653 2556666889888999999999999999999999876653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=289.78 Aligned_cols=195 Identities=17% Similarity=0.245 Sum_probs=152.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCC---CCCCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGK---LDSKLKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSA 72 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~---~~~~~~~~G~v~~~g~~~~~~-----~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~ 72 (1247)
+++|+||||||||||+++|+|. .++. ..+|+|.++|+++... ..++.++|++|++.+++ .|++||+.++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~ 108 (250)
T PRK14245 31 VVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGL 108 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHH
Confidence 4799999999999999999996 3331 1389999999887532 22457999999988776 69999998864
Q ss_pred hccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccch
Q 000867 73 RCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKR 152 (1247)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 152 (1247)
...+... . ......++++++.+||.+...+.. ++.+..||||||||
T Consensus 109 ~~~~~~~------~---------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qr 154 (250)
T PRK14245 109 RVNGVKD------N---------------------------AFIRQRVEETLKGAALWDEVKDKL-KESAFALSGGQQQR 154 (250)
T ss_pred HHcCCCc------H---------------------------HHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHHHHH
Confidence 3221000 0 001123466788888864321222 34566899999999
Q ss_pred hHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcch
Q 000867 153 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPREL 232 (1247)
Q Consensus 153 vsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~ 232 (1247)
++|||||+.+|++++|||||+|||+.++..+.+.|+++. . +++|++++|+.+++.+.+|++++|++|++++.|++++
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~--~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K--DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999873 2 3567778999999999999999999999999998887
Q ss_pred HH
Q 000867 233 VL 234 (1247)
Q Consensus 233 ~~ 234 (1247)
+.
T Consensus 232 ~~ 233 (250)
T PRK14245 232 IF 233 (250)
T ss_pred Hh
Confidence 64
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=291.68 Aligned_cols=195 Identities=22% Similarity=0.344 Sum_probs=155.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++..|++||+.++..-..
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~- 110 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQ- 110 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCccccc-
Confidence 47999999999999999999999887 999999998764322 23569999999888888999999987421000
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
..... . .+.....++++++.+||.+..+ +.+..||||||||++|||
T Consensus 111 -~~~~~---~-------------------------~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Gq~qrv~lar 156 (265)
T PRK10253 111 -PLFTR---W-------------------------RKEDEEAVTKAMQATGITHLAD-----QSVDTLSGGQRQRAWIAM 156 (265)
T ss_pred -ccccC---C-------------------------CHHHHHHHHHHHHHcCCHHHhc-----CCcccCChHHHHHHHHHH
Confidence 00000 0 0001123567788899975444 445679999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 158 al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|++.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+..++.+++|++++|++|++++.|+++++.
T Consensus 157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999987653 3566777899999999999999999999999999887654
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=288.29 Aligned_cols=197 Identities=17% Similarity=0.234 Sum_probs=152.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
+++|+||||||||||+++|+|+.+|....+|+|.++|+++.... .++.++|++|++.+++ .||+||+.++...++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~ 108 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM 108 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc
Confidence 47899999999999999999997521123899999999875432 2467999999988876 6999999886432210
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
.. . .......++.+++.++|.+...... ++.++.|||||||||+|||
T Consensus 109 ~~--~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~lar 155 (246)
T PRK14269 109 IK--N------------------------------KDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCIAR 155 (246)
T ss_pred cc--C------------------------------hHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHHHH
Confidence 00 0 0001123456788888853211111 3456789999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 158 al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
||+.+|++++|||||+|||+.++..+.+.++++. . ++++++++|+.+++.+.+|++++|++|++++.|+.+++.
T Consensus 156 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 156 ALAIKPKLLLLDEPTSALDPISSGVIEELLKELS--H-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--C-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999864 2 456777899999999999999999999999999887654
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=261.16 Aligned_cols=198 Identities=26% Similarity=0.290 Sum_probs=167.0
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+.+++.. ++.||++||++|++||+.+||||||||||||.++|+|.+....++|+|.++|.++
T Consensus 3 ~L~I~dLhv~v~~------------~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVEG------------KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEecC------------chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 4789999988752 2479999999999999999999999999999999999987777899999999987
Q ss_pred Cc----ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCC
Q 000867 757 KQ----ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESGLS 831 (1247)
Q Consensus 757 ~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lS 831 (1247)
.. ++.++-+...+|.|.-+|-.|+.+-|..+.+.+........+..+.+++.++.+++.+ ..++.+. .|+|
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFS 146 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFS 146 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcC
Confidence 53 2234456788999999999999999987765433221112334456788999999987 5566554 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCC
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 890 (1247)
||||||..|+.+++.+|++.+||||-||||..+-+.|-+.++.+..+|++++++||..+
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r 205 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR 205 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 99999999999999999999999999999999999999999999988999999999864
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-31 Score=325.68 Aligned_cols=186 Identities=25% Similarity=0.403 Sum_probs=149.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
.++|+||||||||||+++|+|.++|+ +|+|.+||.++++.. .++.++||+|++.+|+ .|++|||.++..-
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~--- 440 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAAPN--- 440 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCCCc---
Confidence 37999999999999999999999987 999999999876543 3578999999988776 5999999885210
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCC------cccccccccCCccccccccccc
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGL------EVCDDTLVGDEMVRGISGGQKK 151 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~~t~vg~~~~~~LSGGqrq 151 (1247)
... + .+.+.++..++ +++.||.||++ +..|||||||
T Consensus 441 ---------~~~-------------~---------------~i~~al~~~~l~~~i~~p~GldT~vge~-g~~LSgGqrq 482 (574)
T PRK11160 441 ---------ASD-------------E---------------ALIEVLQQVGLEKLLEDDKGLNAWLGEG-GRQLSGGEQR 482 (574)
T ss_pred ---------cCH-------------H---------------HHHHHHHHcCCHHHHcCccccCchhcCC-CCCCCHHHHH
Confidence 000 0 01111222222 67889999965 5679999999
Q ss_pred hhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcc
Q 000867 152 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1247)
Q Consensus 152 RvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~ 231 (1247)
|++||||++++|++++||||||+||+.++..+.+.+++.. . ++++++++|..+.+ ..+|+|++|++|++++.|+++
T Consensus 483 RialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~-~~tviiitHr~~~~-~~~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--Q-NKTVLMITHRLTGL-EQFDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--C-CCEEEEEecChhHH-HhCCEEEEEeCCeEEEeCCHH
Confidence 9999999999999999999999999999999999998863 2 34555567766555 569999999999999999999
Q ss_pred hHHH
Q 000867 232 LVLD 235 (1247)
Q Consensus 232 ~~~~ 235 (1247)
++.+
T Consensus 559 ~l~~ 562 (574)
T PRK11160 559 ELLA 562 (574)
T ss_pred HHHh
Confidence 8864
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-31 Score=327.54 Aligned_cols=199 Identities=26% Similarity=0.351 Sum_probs=163.0
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
..++++|++++++. .++++|+|+|++++|||+++|+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 329 ~~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~--~~G~I~i~g~~ 395 (571)
T TIGR02203 329 GDVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP--DSGQILLDGHD 395 (571)
T ss_pred CeEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEe
Confidence 46999999998741 124699999999999999999999999999999999998763 47999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 825 (1247)
+++ ..+++.++|++|++.+++ -|++||+.+.. +.+.+ +++++++++.+|+.+. .|+.+|..
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~ 466 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466 (571)
T ss_pred HHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCC
Confidence 653 345677999999998876 59999997642 11222 2346677887777543 35566643
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhcC
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEG 900 (1247)
Q Consensus 826 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 900 (1247)
.+.||||||||++||||++++|+|++||||||+||..++..+.+.|++.. +++|+|++||+++ ..+.+|+.
T Consensus 467 -g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~i 537 (571)
T TIGR02203 467 -GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRI 537 (571)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEE
Confidence 46799999999999999999999999999999999999999999999874 5799999999984 56677773
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=291.22 Aligned_cols=192 Identities=20% Similarity=0.226 Sum_probs=153.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccc--cCCCCCHHHHHHHHHhcc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDV--HIGEMTVRETLAFSARCQ 75 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~--~~~~lTv~e~l~f~~~~~ 75 (1247)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. +.+.+|+.|++.+..+..
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 117 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN 117 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhc
Confidence 47999999999999999999999987 999999998765321 1346999999864 567789999998754321
Q ss_pred CCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCc-ccccccccCCccccccccccchhH
Q 000867 76 GVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE-VCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRvs 154 (1247)
.. .. ..+..+.++++++.+||. ...+ ..+..|||||||||+
T Consensus 118 ~~---~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LS~G~~qrv~ 159 (267)
T PRK15112 118 TD---LE------------------------------PEQREKQIIETLRQVGLLPDHAS-----YYPHMLAPGQKQRLG 159 (267)
T ss_pred cC---CC------------------------------HHHHHHHHHHHHHHcCCChHHHh-----cCchhcCHHHHHHHH
Confidence 00 00 001112356788999994 3333 344579999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 155 iA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++..+||++++|++|++++.|+.+++.
T Consensus 160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK-QGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 999999999999999999999999999999999997653 3566777899999999999999999999999999877654
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=282.73 Aligned_cols=203 Identities=20% Similarity=0.258 Sum_probs=159.5
Q ss_pred cEEEEEeEEEEEecCc----hhhh--ccc-cccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEE
Q 000867 676 HSLTFDEVTYSVDMPK----EMKL--QGI-LEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGN 748 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~----~~~~--~~~-~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~ 748 (1247)
+.+.++|++..++... ..+. ... ...++.+|+|+|++++|||+++|+||||||||||+++|+|..++ .+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceE
Confidence 4678888876655421 1111 011 22456799999999999999999999999999999999998653 4799
Q ss_pred EEEcCccCCcccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000867 749 ITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828 (1247)
Q Consensus 749 i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 828 (1247)
|.++|. +++++|+..+.+.+|+.||+.+..... ....+...+.++++++.+++.+..+..+ +
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----K 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----c
Confidence 999984 356677776777899999998754332 1223444456778888899987776654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 829 ~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
.||||||||++||+||+.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|++. .+.+..|+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~ 212 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTK 212 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCE
Confidence 69999999999999999999999999999999999999999999998777999999999975 34445565
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=298.52 Aligned_cols=202 Identities=16% Similarity=0.155 Sum_probs=156.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCC-CceeeEEEECCccCCCCcc-------cceEEEeccccc--cCCCCCHHHHHHH
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSK-LKFSGRVTYNGHGMDEFVP-------QRTAAYISQHDV--HIGEMTVRETLAF 70 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~-~~~~G~v~~~g~~~~~~~~-------~~~i~yv~Q~~~--~~~~lTv~e~l~f 70 (1247)
+++|+|+||||||||+++|+|+.++. ...+|+|.++|+++..... ++.++||+|++. +.+.+||.+++.+
T Consensus 35 ~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~ 114 (330)
T PRK15093 35 IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQ 114 (330)
T ss_pred EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHH
Confidence 47999999999999999999998631 1248999999988754321 246999999865 5778899999976
Q ss_pred HHhccCC-CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccc
Q 000867 71 SARCQGV-GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQ 149 (1247)
Q Consensus 71 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 149 (1247)
....... +..+. . ..+.+..+.++|+.+||.+..+ +.++.+..|||||
T Consensus 115 ~~~~~~~~~~~~~---~--------------------------~~~~~~~~~~~L~~~gL~~~~~--~~~~~p~~LSgG~ 163 (330)
T PRK15093 115 NIPGWTYKGRWWQ---R--------------------------FGWRKRRAIELLHRVGIKDHKD--AMRSFPYELTEGE 163 (330)
T ss_pred HHHhhhccccccc---c--------------------------HHHHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHH
Confidence 4221000 00000 0 0011234567899999974321 2245677899999
Q ss_pred cchhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecC
Q 000867 150 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGP 229 (1247)
Q Consensus 150 rqRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~ 229 (1247)
||||+|||||+.+|+++++||||+|||+.++.++++.|+++.+. .+.++++++|+...+.+++|+|++|++|++++.|+
T Consensus 164 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~ 242 (330)
T PRK15093 164 CQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN-NNTTILLISHDLQMLSQWADKINVLYCGQTVETAP 242 (330)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999997653 35677789999999999999999999999999999
Q ss_pred cchHH
Q 000867 230 RELVL 234 (1247)
Q Consensus 230 ~~~~~ 234 (1247)
.+++.
T Consensus 243 ~~~i~ 247 (330)
T PRK15093 243 SKELV 247 (330)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=291.37 Aligned_cols=197 Identities=19% Similarity=0.305 Sum_probs=152.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCC--CceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSK--LKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~--~~~~G~v~~~g~~~~~~-----~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+||||||||||+++|+|..+|. ...+|+|.++|+++... ..++.++|++|++.+++. ||+||+.++..
T Consensus 47 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~ 125 (267)
T PRK14235 47 VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPR 125 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHH
Confidence 47999999999999999999998741 01389999999887421 224679999999887774 99999998653
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
.++... . + .+....++++++.+||.+...... ++.+..||||||||+
T Consensus 126 ~~~~~~--~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv 172 (267)
T PRK14235 126 IHGLAR--S------K------------------------AELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQRL 172 (267)
T ss_pred hccccc--c------h------------------------HHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHH
Confidence 221100 0 0 001123466788888854211111 345668999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +.+|++++|+.+.+...+|++++|++|+++..|+.+++
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~---~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ---NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc---CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998743 35677789999999999999999999999999987765
Q ss_pred H
Q 000867 234 L 234 (1247)
Q Consensus 234 ~ 234 (1247)
.
T Consensus 250 ~ 250 (267)
T PRK14235 250 F 250 (267)
T ss_pred H
Confidence 3
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=282.98 Aligned_cols=196 Identities=24% Similarity=0.321 Sum_probs=152.3
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 756 (1247)
.++++|+++.++. .++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 68 (221)
T cd03244 2 DIEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDI 68 (221)
T ss_pred cEEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEh
Confidence 4778899877631 12469999999999999999999999999999999999865 3479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc-cc-----CCCC
Q 000867 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL-VG-----LPGE 827 (1247)
Q Consensus 757 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~-~g-----~~~~ 827 (1247)
.. ..+++.++|++|++.+++ .|++||+.+.. ... .+.+.+.++.+++.+..+.. .| ....
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~ 137 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVVEEGG 137 (221)
T ss_pred HhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhcccccccccccCC
Confidence 42 234567999999988776 59999986421 111 12345666767765543321 00 1134
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
..||+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||+++|++.. + ...|+
T Consensus 138 ~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~ 206 (221)
T cd03244 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-I-IDSDR 206 (221)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-hhCCE
Confidence 67999999999999999999999999999999999999999999998754 6899999999854 2 23555
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=285.39 Aligned_cols=191 Identities=25% Similarity=0.379 Sum_probs=155.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~-~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1247)
+++|+||||||||||+++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.+|++||+.+.....+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~-- 102 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKH-- 102 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCC--
Confidence 37899999999999999999999886 9999999988754322 46799999999888889999999886432110
Q ss_pred ccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHH
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al 159 (1247)
. . ......++++++.+++....++ ..+.||||||||++|||+|
T Consensus 103 --~------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 103 --P------K------------------------AKIKARVEELLELVQLEGLGDR-----YPNQLSGGQRQRVALARAL 145 (237)
T ss_pred --C------H------------------------HHHHHHHHHHHHHcCCHhHhhC-----ChhhCCHHHHHHHHHHHHH
Confidence 0 0 0011234667888888654443 4457999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHH
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 160 ~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~ 234 (1247)
+.+|++++|||||+|||+.++..+.+.+++.... .++++++++|...++.+.+|++++|++|++++.|+.+++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~-~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE-VHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999987542 3566777889888999999999999999999999887764
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=280.16 Aligned_cols=181 Identities=24% Similarity=0.336 Sum_probs=140.2
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc-------ccccceEEEeccCCCCC
Q 000867 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFTRISGYCEQNDIHS 775 (1247)
Q Consensus 703 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~~v~q~~~~~ 775 (1247)
+.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 4699999999999999999999999999999999998653 47999999986532 12345689999998877
Q ss_pred CCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000867 776 PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS-------LVGLPGESGLSTEQRKRLTIAVELVANP 848 (1247)
Q Consensus 776 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~g~~~~~~lSgGqr~r~~ia~~l~~~p 848 (1247)
..|++||+.+... ...+ ..+++++.+++.+..+. ..+ .....||||||||++|||+|+.+|
T Consensus 92 -~~t~~~nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 92 -NATVEENITFGSP------FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred -cccHHHHHhhcCc------CCHH----HHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHhhCC
Confidence 5799999976421 1111 23455666666443221 111 124579999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 849 SIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 849 ~il~lDEptsgLD~~~~~~i~~--~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
++++|||||+|||+.+...+++ .++.+.++|.|+|+++|++.. + ...|+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~ 210 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADW 210 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCE
Confidence 9999999999999999999998 566555568999999999964 3 34554
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=278.29 Aligned_cols=181 Identities=22% Similarity=0.407 Sum_probs=137.5
Q ss_pred EEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCc
Q 000867 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 758 (1247)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 758 (1247)
+++|+++.+.... ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 2 ~~~~l~~~~~~~~--------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g----- 66 (204)
T cd03250 2 SVEDASFTWDSGE--------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG----- 66 (204)
T ss_pred EEeEEEEecCCCC--------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC-----
Confidence 5778877653100 001359999999999999999999999999999999999865 3479999998
Q ss_pred ccccceEEEeccCCCCCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCCCCCCCC
Q 000867 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ-------SLVGLPGESGLS 831 (1247)
Q Consensus 759 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~-------~~~g~~~~~~lS 831 (1247)
.++|++|++.+++ .|++||+.+... ...+ ...+.++.+++.+..+ +... .....||
T Consensus 67 -----~i~~~~q~~~l~~-~t~~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS 129 (204)
T cd03250 67 -----SIAYVSQEPWIQN-GTIRENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLS 129 (204)
T ss_pred -----EEEEEecCchhcc-CcHHHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCC
Confidence 4799999998874 699999976421 1111 1223344444332111 1121 1245799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeccCCh
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSI 891 (1247)
Q Consensus 832 gGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~-~l~~~~~~g~tvi~~~H~~~~ 891 (1247)
+|||||++|||+|+.+|++++|||||+|||+.+...+.+ ++++..++|+|||+++|++..
T Consensus 130 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~ 190 (204)
T cd03250 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL 190 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH
Confidence 999999999999999999999999999999999999988 566665668999999999853
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=266.60 Aligned_cols=192 Identities=22% Similarity=0.328 Sum_probs=167.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1247)
|.+++|||||||||.+++|+|.++|+ +|+|.++|.+++.. .+.+|||+|.+--+++.+||.|.|.|-++++++..
T Consensus 30 i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~-~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~- 104 (300)
T COG4152 30 IFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPK- 104 (300)
T ss_pred EEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhh-hhhhcccChhhhccCccCcHHHHHHHHHHhcCCcH-
Confidence 57899999999999999999999997 99999999987653 24579999999999999999999999999987521
Q ss_pred cchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHHHh
Q 000867 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~al~ 160 (1247)
++.+...+.+|+++++..... +++.+||.|.+|++-+-.+++
T Consensus 105 ---------------------------------~e~~~~~~~wLer~~i~~~~~-----~kIk~LSKGnqQKIQfisavi 146 (300)
T COG4152 105 ---------------------------------AEIQKKLQAWLERLEIVGKKT-----KKIKELSKGNQQKIQFISAVI 146 (300)
T ss_pred ---------------------------------HHHHHHHHHHHHhcccccccc-----chHHHhhhhhhHHHHHHHHHh
Confidence 223345678899999876554 456689999999999999999
Q ss_pred cCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHHHH
Q 000867 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFF 237 (1247)
Q Consensus 161 ~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~~f 237 (1247)
++|++++||||+|||||-+.+-+-+.+.++.. .+.+|+..+|.+..+.++||++++|++|+.|.+|+.+++.+-|
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~--~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKE--EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHh--cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 99999999999999999999999899988754 4677777899999999999999999999999999999998644
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=298.73 Aligned_cols=185 Identities=25% Similarity=0.359 Sum_probs=149.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 2 ~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
+||+|+||||||||+++|+|..+|+ +|+|++||.++.... .++.+++++|...+| ..|+|||+..+..-
T Consensus 367 vAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA~~~---- 438 (573)
T COG4987 367 VAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLF-SGTLRDNLRLANPD---- 438 (573)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHH-HHHHHHHHhhcCCC----
Confidence 7999999999999999999999997 999999999876543 357899999976655 55999999985321
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhC-------CcccccccccCCccccccccccc
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLG-------LEVCDDTLVGDEMVRGISGGQKK 151 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqrq 151 (1247)
++.+ ...+.++.+| .+++.||.+|+ .++.|||||||
T Consensus 439 --------AsDE----------------------------el~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~r 481 (573)
T COG4987 439 --------ASDE----------------------------ELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERR 481 (573)
T ss_pred --------CCHH----------------------------HHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHH
Confidence 0000 0111222222 45678899985 56689999999
Q ss_pred hhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcc
Q 000867 152 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRE 231 (1247)
Q Consensus 152 RvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~ 231 (1247)
|++|||+|++++++++|||||.|||+.|+.++++.+.+.++ +++++.+||+... .+.||+|++|++|++++.|+++
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~---~kTll~vTHrL~~-le~~drIivl~~Gkiie~G~~~ 557 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE---GKTLLMVTHRLRG-LERMDRIIVLDNGKIIEEGTHA 557 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc---CCeEEEEeccccc-HhhcCEEEEEECCeeeecCCHH
Confidence 99999999999999999999999999999999999987543 4556667887755 4668999999999999999999
Q ss_pred hHHH
Q 000867 232 LVLD 235 (1247)
Q Consensus 232 ~~~~ 235 (1247)
++..
T Consensus 558 ~Ll~ 561 (573)
T COG4987 558 ELLA 561 (573)
T ss_pred hhhc
Confidence 8863
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=290.70 Aligned_cols=194 Identities=23% Similarity=0.328 Sum_probs=154.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC---cccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF---VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+||.||+.++.... .
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~ 114 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPW-H 114 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccc-c
Confidence 47999999999999999999999886 99999999876432 22357999999988888899999998742100 0
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
. .... . ....+..++.+++.++|++..++. +..|||||||||+|||
T Consensus 115 ~-~~~~--------------~--------------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~lar 160 (265)
T PRK10575 115 G-ALGR--------------F--------------GAADREKVEEAISLVGLKPLAHRL-----VDSLSGGERQRAWIAM 160 (265)
T ss_pred c-cccC--------------C--------------CHHHHHHHHHHHHHcCCHHHhcCC-----cccCCHHHHHHHHHHH
Confidence 0 0000 0 000112356778889997654444 4579999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 158 al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.+.+|+|++|++|++++.|+.+++
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE-RGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 999999999999999999999999999999987653 245677789999999999999999999999999987665
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=287.85 Aligned_cols=197 Identities=18% Similarity=0.271 Sum_probs=153.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCC--CCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD--SKLKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~--~~~~~~G~v~~~g~~~~~~-----~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+||||||||||+++|+|+++ |....+|+|.++|+++... ..++.++|++|++.+++.+|++||+.++.+
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 111 (252)
T PRK14256 32 VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYK 111 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHH
Confidence 479999999999999999999985 3211389999999876421 234679999999888988999999987543
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
..+. .+ . .+.+..+++.++.+|+........ +..+..||||||||+
T Consensus 112 ~~~~---~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrl 157 (252)
T PRK14256 112 LNGR---VN------R------------------------SEADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQQQRL 157 (252)
T ss_pred hcCC---CC------H------------------------HHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHHHHHHH
Confidence 2110 00 0 001123456777888753211111 234668999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+|||||+.+|++++|||||+|||+.++.++.+.|+++.+ + ++|++++|+.+++.+.||++++|++|++++.|+++++
T Consensus 158 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 158 CIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998753 3 5677789999999999999999999999999988775
Q ss_pred H
Q 000867 234 L 234 (1247)
Q Consensus 234 ~ 234 (1247)
.
T Consensus 235 ~ 235 (252)
T PRK14256 235 F 235 (252)
T ss_pred H
Confidence 3
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=332.87 Aligned_cols=191 Identities=25% Similarity=0.368 Sum_probs=147.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1247)
.++|+||||||||||+++|+|+++|+ +|+|.+||+++++.. .++.++||+|++.+|. .|++|||.++..-
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~~~--- 581 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGLTD--- 581 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCCCC---
Confidence 37999999999999999999999997 999999999886543 3578999999988775 5999999885210
Q ss_pred CCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHH
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~ 157 (1247)
.+ ..+..+.. +.+. .++.++ .|+++.||.+|++ +.+||||||||++|||
T Consensus 582 ---~~-~e~i~~al---------------~~a~---------l~~~i~--~lp~GldT~ige~-G~~LSGGQkQRlalAR 630 (711)
T TIGR00958 582 ---TP-DEEIMAAA---------------KAAN---------AHDFIM--EFPNGYDTEVGEK-GSQLSGGQKQRIAIAR 630 (711)
T ss_pred ---CC-HHHHHHHH---------------HHcC---------CHHHHH--hCCCccCCcccCC-CCcCCHHHHHHHHHHH
Confidence 00 00010000 0000 111222 3677899999965 5689999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHH
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 158 al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~ 235 (1247)
|++++|+|++||||||+||+.++..+.+ ... ..++|+++++|..+ ....+|+|++|++|++++.|+++++.+
T Consensus 631 ALl~~p~ILILDEpTSaLD~~te~~i~~-~~~----~~~~TvIiItHrl~-~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 631 ALVRKPRVLILDEATSALDAECEQLLQE-SRS----RASRTVLLIAHRLS-TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHhcCCCEEEEEccccccCHHHHHHHHH-hhc----cCCCeEEEEeccHH-HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 9999999999999999999999998888 221 13456666788765 457799999999999999999999864
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-30 Score=295.39 Aligned_cols=203 Identities=27% Similarity=0.378 Sum_probs=173.2
Q ss_pred cEEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCcc
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 755 (1247)
.-++.+|++.++. ..++|+||||+++|||++||+|.||||||||+|+|+|-.. +.+|+|.+||.+
T Consensus 7 ~ll~~~~i~K~Fg-------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~ 71 (500)
T COG1129 7 PLLELRGISKSFG-------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKP 71 (500)
T ss_pred ceeeeecceEEcC-------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEE
Confidence 3577888876653 4579999999999999999999999999999999999766 348999999998
Q ss_pred CCcc----cccceEEEeccCCCCCCCcCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000867 756 KKQE----TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGL 830 (1247)
Q Consensus 756 ~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 830 (1247)
.... ....-++.|.|+..+.|++||.||+.++...+.+ .-.+.....++..++++.+|+....++.++ .|
T Consensus 72 ~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~L 146 (500)
T COG1129 72 VAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DL 146 (500)
T ss_pred ccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hC
Confidence 6532 2334589999999999999999999766443321 224566667778899999999644777775 59
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 831 SgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
|.||||.|.|||||..+++||+||||||+|+......+.+.++++.++|.+||+++|... |+|+.-|+
T Consensus 147 siaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~Dr 214 (500)
T COG1129 147 SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADR 214 (500)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCE
Confidence 999999999999999999999999999999999999999999999999999999999774 89999998
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=287.53 Aligned_cols=196 Identities=19% Similarity=0.283 Sum_probs=151.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCC--CceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSK--LKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~--~~~~G~v~~~g~~~~~~-----~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+||||||||||+++|+|..+|. ...+|+|.++|.++... ..++.++|++|++.+++ .|++||+.|+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~ 110 (251)
T PRK14270 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPR 110 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHH
Confidence 47999999999999999999998641 11389999999887431 12467999999988776 899999998643
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
..+... . .+....++++++.+||.+..... -++.+..||||||||+
T Consensus 111 ~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv 156 (251)
T PRK14270 111 IHGIKD---------K------------------------KELDKIVEWALKKAALWDEVKDD-LKKSALKLSGGQQQRL 156 (251)
T ss_pred hcCCCc---------H------------------------HHHHHHHHHHHHHcCCchhhhhH-hhCCcccCCHHHHHHH
Confidence 221000 0 00112345567777774211111 1345668999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+||||++.+|++++|||||+|||+.++.++.+.|+++.+ + .+|++++|+.+++.+.+|++++|++|++++.|+.+++
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 157 CIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999999998753 3 5667788999999999999999999999999988876
Q ss_pred H
Q 000867 234 L 234 (1247)
Q Consensus 234 ~ 234 (1247)
.
T Consensus 234 ~ 234 (251)
T PRK14270 234 F 234 (251)
T ss_pred h
Confidence 4
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-31 Score=254.99 Aligned_cols=190 Identities=21% Similarity=0.271 Sum_probs=158.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCC----------c------ccceEEEeccccccCCCCCHH
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF----------V------PQRTAAYISQHDVHIGEMTVR 65 (1247)
Q Consensus 2 ~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~----------~------~~~~i~yv~Q~~~~~~~lTv~ 65 (1247)
+.|+|.|||||||+|++|.=+..|. +|.|.+||+.+.-. . .|.+.++|+|+-.++..+||.
T Consensus 35 isIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvL 111 (256)
T COG4598 35 ISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVL 111 (256)
T ss_pred EEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHH
Confidence 6899999999999999999988887 99999999876211 1 123579999999999999999
Q ss_pred HHHHHHHhccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccc
Q 000867 66 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGI 145 (1247)
Q Consensus 66 e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 145 (1247)
||+.-+... +.. ..+.++.+..+.+|..+|+.+..| .++..|
T Consensus 112 eNViEaPvh---------VLg------------------------~~k~ea~e~Ae~~L~kVGi~ek~~-----~YP~~L 153 (256)
T COG4598 112 ENVIEAPVH---------VLG------------------------VSKAEAIERAEKYLAKVGIAEKAD-----AYPAHL 153 (256)
T ss_pred HHHHhcchH---------hhc------------------------CCHHHHHHHHHHHHHHhCchhhhh-----cCcccc
Confidence 999764210 000 112234455678899999987665 456689
Q ss_pred cccccchhHHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEE
Q 000867 146 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIV 225 (1247)
Q Consensus 146 SGGqrqRvsiA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~ 225 (1247)
||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++++.+ ++|.+.++|.+..+-+...+|+.|.+|.|-
T Consensus 154 SGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE--grTMv~VTHEM~FAR~Vss~v~fLh~G~iE 231 (256)
T COG4598 154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE--GRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231 (256)
T ss_pred CchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh--CCeEEEEeeehhHHHhhhhheEEeecceec
Confidence 999999999999999999999999999999999999999999999864 566667899999999999999999999999
Q ss_pred EecCcchHH
Q 000867 226 YQGPRELVL 234 (1247)
Q Consensus 226 ~~G~~~~~~ 234 (1247)
++|+++++.
T Consensus 232 E~G~P~qvf 240 (256)
T COG4598 232 EEGPPEQVF 240 (256)
T ss_pred ccCChHHHh
Confidence 999998874
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=280.74 Aligned_cols=179 Identities=23% Similarity=0.334 Sum_probs=144.9
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCC--CcCHHHHHHHHh
Q 000867 711 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSP--FVTVYESLLYSA 788 (1247)
Q Consensus 711 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~--~ltv~e~l~~~~ 788 (1247)
+++++||+++|+|+||||||||+++|+|..+. .+|+|.+||.+... .++.++|++|++.+++ .+|+.|++.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP--AKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 46889999999999999999999999998653 47999999987542 3456899999987643 479999998753
Q ss_pred hccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 000867 789 WLRLP-PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 867 (1247)
Q Consensus 789 ~~~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~ 867 (1247)
..... ........++++.++++.+++.+..++.+ ..||||||||++|||+|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 00111223446788999999987777665 3699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEeccCChHHHHhhhc
Q 000867 868 VMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 868 i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~ 182 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDR 182 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999998777999999999986 46666676
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-30 Score=314.28 Aligned_cols=206 Identities=21% Similarity=0.260 Sum_probs=163.5
Q ss_pred EEEEEeEEEEEecCchhhhccccccccceeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eEEEEEEEcC
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 753 (1247)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 753 (1247)
-++++|++++++.. ...+.+|+|+||++++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 47889998877411 01246999999999999999999999999999999999976531 2589999999
Q ss_pred ccCCcc------cc-cceEEEeccCCC--CCCCcCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc---cccc
Q 000867 754 YPKKQE------TF-TRISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL---RQSL 821 (1247)
Q Consensus 754 ~~~~~~------~~-~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~---~~~~ 821 (1247)
.++... .. ++.+||++|++. +.+.+|++|++.+...... ..+....+++++++++.+||.+. .+..
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 876431 11 246899999974 5677899999876432211 22344455678899999999763 3555
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeccCChHHHHhhhc
Q 000867 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 822 ~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 899 (1247)
+ ..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+..|+
T Consensus 154 ~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dr 226 (529)
T PRK15134 154 P-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADR 226 (529)
T ss_pred C-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCE
Confidence 4 479999999999999999999999999999999999999999999998765 899999999986 34456676
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=287.98 Aligned_cols=196 Identities=19% Similarity=0.300 Sum_probs=150.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCC--CCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD--SKLKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~--~~~~~~G~v~~~g~~~~~~-----~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+||||||||||+++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.+++ .||+||+.++..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~ 111 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLR 111 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHH
Confidence 479999999999999999999853 4212389999999876421 22467999999988776 799999988643
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
..+... + +..+..++.+++.+++.+...+. -++.+..|||||||||
T Consensus 112 ~~~~~~--~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv 157 (252)
T PRK14239 112 LKGIKD--K-------------------------------QVLDEAVEKSLKGASIWDEVKDR-LHDSALGLSGGQQQRV 157 (252)
T ss_pred HcCCCc--H-------------------------------HHHHHHHHHHHHHcCCchhHHHH-HhcCcccCCHHHHHHH
Confidence 221000 0 00112244567777764321111 1345668999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|++++|+.+++.+.||++++|++|++++.|+.+++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 158 CIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998743 3 5677789999999999999999999999999988776
Q ss_pred H
Q 000867 234 L 234 (1247)
Q Consensus 234 ~ 234 (1247)
.
T Consensus 235 ~ 235 (252)
T PRK14239 235 F 235 (252)
T ss_pred H
Confidence 4
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=288.53 Aligned_cols=197 Identities=20% Similarity=0.301 Sum_probs=152.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCCCC--CceeeEEEECCccCCC-----CcccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSK--LKFSGRVTYNGHGMDE-----FVPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~~~--~~~~G~v~~~g~~~~~-----~~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+||||||||||+++|+|..+|. ...+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.++..
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~ 111 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLK 111 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHH
Confidence 47999999999999999999998641 0138999999987632 1224679999999888999999999988653
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
..+. .. .++.++.++++++.+||........ ++.+.+|||||||||
T Consensus 112 ~~~~---~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv 157 (258)
T PRK14241 112 LNGV---RN------------------------------KKDLDELVEKSLRGANLWNEVKDRL-DKPGGGLSGGQQQRL 157 (258)
T ss_pred hcCC---CC------------------------------HHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHHHHHHH
Confidence 2110 00 0011123456778888742111111 345668999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEec------CCcEEEe
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS------DAQIVYQ 227 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~------~G~v~~~ 227 (1247)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|++++|+..++.+.+|++++|+ +|++++.
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 158 CIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--D-YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 999999999999999999999999999999999998742 3 567778999999999999999996 7999999
Q ss_pred cCcchHH
Q 000867 228 GPRELVL 234 (1247)
Q Consensus 228 G~~~~~~ 234 (1247)
|+++++.
T Consensus 235 ~~~~~~~ 241 (258)
T PRK14241 235 DDTEKIF 241 (258)
T ss_pred CCHHHHH
Confidence 9887764
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=291.11 Aligned_cols=195 Identities=28% Similarity=0.398 Sum_probs=154.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 2 ~~ivG~~GsGKSTLL~~L~G~~~~~~~~~G~v~~~g~~~~~~~~---~~~i~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1247)
.+|+||||||||||.++|.|.-+|. +|.|.++|.+++..+. .+.|||+||+-.+|+. ||.|||.= +.
T Consensus 365 lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaR---f~--- 434 (580)
T COG4618 365 LGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIAR---FG--- 434 (580)
T ss_pred EEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHh---cc---
Confidence 5899999999999999999999886 9999999999876544 3789999998776665 99999942 11
Q ss_pred CccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchhHHHHH
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsiA~a 158 (1247)
++.|.+.+.+++... .+.++ ++.|++++||.||+.+ .+||||||||+++|||
T Consensus 435 -------------------~~~d~~kIieAA~lA------gvHel--Il~lP~GYdT~iG~~G-~~LSgGQRQRIaLARA 486 (580)
T COG4618 435 -------------------EEADPEKVIEAARLA------GVHEL--ILRLPQGYDTRIGEGG-ATLSGGQRQRIALARA 486 (580)
T ss_pred -------------------ccCCHHHHHHHHHHc------ChHHH--HHhCcCCccCccCCCC-CCCCchHHHHHHHHHH
Confidence 112223333333221 12222 3569999999999754 5899999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchHHHHH
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFF 237 (1247)
Q Consensus 159 l~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~~~~f 237 (1247)
|+++|.+++||||-|.||...+.-+.+.+.+..+ .++++|+ ++|. +.+...+|+|++|++|++..+|+.++++...
T Consensus 487 lYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvv-iaHR-Ps~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 487 LYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVV-IAHR-PSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred HcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEE-EecC-HHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999999999999999988643 4455444 5553 4688899999999999999999999988654
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=289.41 Aligned_cols=196 Identities=18% Similarity=0.274 Sum_probs=151.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCC--CCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD--SKLKFSGRVTYNGHGMDEF-----VPQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 ~~~ivG~~GsGKSTLL~~L~G~~~--~~~~~~G~v~~~g~~~~~~-----~~~~~i~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1247)
+++|+||||||||||+++|+|.++ |....+|+|.++|+++... ..++.++|++|++.+++. ||+||+.++..
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~ 118 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPR 118 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHH
Confidence 479999999999999999999986 3212389999999876421 224579999999888875 99999988643
Q ss_pred ccCCCCccchhhHhhHHHHhcCCCCCCchhHHHHHhhhhhhhhhhhHHHHHHHhCCcccccccccCCccccccccccchh
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1247)
..+... .++....++++++.+++.+...... ++.+.+||||||||+
T Consensus 119 ~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~qrv 164 (259)
T PRK14274 119 IHGTKN---------------------------------KKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQRL 164 (259)
T ss_pred hcCCCC---------------------------------HHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHH
Confidence 211000 0001122455677777753211111 345668999999999
Q ss_pred HHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHHHhcCCEEEEEecCCChhHHhhcccEEEecCCcEEEecCcchH
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 siA~al~~~p~illLDEptsgLD~~~~~~i~~~l~~~~~~~~~~~iv~~~~~~~~~~~~~D~v~~l~~G~v~~~G~~~~~ 233 (1247)
+|||+|+.+|++++|||||+|||+.++..+.+.++++.. +.++++++|+.+.+.+.+|++++|++|+++.+|+++++
T Consensus 165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE---KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999998742 35667789999999999999999999999999998876
Q ss_pred H
Q 000867 234 L 234 (1247)
Q Consensus 234 ~ 234 (1247)
.
T Consensus 242 ~ 242 (259)
T PRK14274 242 F 242 (259)
T ss_pred h
Confidence 4
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1247 | ||||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 7e-11 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-09 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-09 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 9e-09 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-08 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-08 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-08 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-08 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-08 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-08 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-08 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-08 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 4e-08 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 6e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 7e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 8e-08 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 8e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-07 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-07 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-07 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 1e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-06 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-06 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-06 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 3e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 3e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-06 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 5e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 6e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-06 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 7e-06 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 8e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 9e-06 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-05 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 1e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-05 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-05 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-05 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 3e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 4e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 4e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 4e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 7e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-04 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-04 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-04 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 6e-04 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 7e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 8e-04 |
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1247 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 9e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-10 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-22 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 8e-10 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 9e-22 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-08 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-21 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-05 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-04 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-21 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 7e-11 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-20 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-12 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 8e-07 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-06 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 6e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-05 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-18 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-06 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-05 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-18 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 9e-11 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-17 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 5e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-16 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-07 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-14 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-14 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-14 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 8e-07 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-13 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-08 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 8e-13 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 1e-05 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-11 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 4e-11 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 6e-11 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 6e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 7e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 9e-04 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-08 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 8e-09 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-08 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-08 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-07 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-07 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 4e-07 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 5e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 5e-07 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 8e-07 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 2e-06 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-06 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 4e-06 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 5e-06 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-05 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-05 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 3e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 5e-05 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-04 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 7e-04 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 2e-04 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 3e-04 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 4e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 4e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 4e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 8e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-25
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 761
L G+S G + L+G +GAGKTT + +++ + + G +T+ G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
++ Y + + E L + A S + +E E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR 143
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 882 VVCTIH 887
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 38/197 (19%), Positives = 64/197 (32%), Gaps = 62/197 (31%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE----------FVPQRTAAYIS 53
L+GP +GKTT L ++ + SG VT G + E ++P+ AY
Sbjct: 46 LIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY-- 100
Query: 54 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEG 113
M E L F A S E+ + A
Sbjct: 101 ------RNMQGIEYLRFVAGFYASSSS-----EIEEMVERA------------------- 130
Query: 114 QEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEIS 172
++ GL + V S G +++ ++ P L +DE +
Sbjct: 131 ----------TEIAGLGE-----KIKDRVSTYSKGMVRKLLIARALMVNPRL-AILDEPT 174
Query: 173 TGLDSSTTFQIVNSIRQ 189
+GLD ++ ++Q
Sbjct: 175 SGLDVLNAREVRKILKQ 191
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 2e-22
Identities = 39/186 (20%), Positives = 78/186 (41%), Gaps = 22/186 (11%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQETFT 762
L ++ G + G +G GKTTL+ ++ Y+ G I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVPIT-KVKG 78
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
+I + + I ++V + L A L + K I + +E VE+ L++ L
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKKL- 131
Query: 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 881
LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 132 -----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 882 VVCTIH 887
++ +
Sbjct: 187 IISSRE 192
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 8e-10
Identities = 37/232 (15%), Positives = 67/232 (28%), Gaps = 66/232 (28%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE------FVPQRTAAYISQHDV 57
GP GKTTLL ++ L G + YNG + + F+P+
Sbjct: 40 FHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGKIFFLPEEIIVP------ 90
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+++V + L A GV + K
Sbjct: 91 --RKISVEDYLKAVASLYGV-----------KVNKNE----------------------- 114
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLD 176
L+ + + + +S G +RV ++ + +D+ +D
Sbjct: 115 --IMDALESVEVLDLKKK------LGELSQGTIRRVQLASTLLVNAEI-YVLDDPVVAID 165
Query: 177 SSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
+ +++ SI I G +IS + E D L
Sbjct: 166 EDSKHKVLKSIL-EILKEKGIVIIS----SREELSYCDVNENLHKYSTKIDK 212
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 9e-22
Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 33/195 (16%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETF 761
L ++ G + A++G +G GK+TL+D+L G R G I E +
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVY 65
Query: 762 TRISGYCEQNDIHSPF-VTVYESLL-----YSAWLRLPPEVDSETQKMFIEEIMELVELN 815
I G+ Q SPF +V + +L + P D + + ++ + L
Sbjct: 66 QSI-GFVPQF-FSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV----AMQALDYLNLT 119
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 874
L + + LS QR+ + IA + + +I +DEPTS LD IV+ + +
Sbjct: 120 HLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDL 174
Query: 875 TVDTGRTVVCTIHQP 889
TVV T HQP
Sbjct: 175 AQSQNMTVVFTTHQP 189
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 40/241 (16%), Positives = 78/241 (32%), Gaps = 64/241 (26%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+ +LG GK+TLL L G G++ ++ ++ Q
Sbjct: 33 ILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY----------QSIGFVPQFFSSPF 79
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
+V + + G R + A+ + D V M+A
Sbjct: 80 AYSVLDIVLM-------G-RSTHINTFAKPKSH-------DYQVAMQA------------ 112
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGL 175
L L L +SGGQ++ + ++ A+A + +DE ++ L
Sbjct: 113 ---LDYLNLTHLAKREFTS-----LSGGQRQLI-----LIARAIASECKLILLDEPTSAL 159
Query: 176 DSSTTFQIVNSIRQNIHILNGTAVISL--LQPAPETYDLFDDIILLSDAQIVYQGPRELV 233
D + +++ + N T V + + + +LL+ Q G +
Sbjct: 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLLNK-QNFKFGETRNI 215
Query: 234 L 234
L
Sbjct: 216 L 216
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 2e-21
Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 35/249 (14%)
Query: 644 VKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKL 703
V + S RE + L F +L F + D+ + + L
Sbjct: 300 VYGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSL 359
Query: 704 M------LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP 755
+LN G F + +MG +G GKTTL+ +LAG + G + +S P
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKP 419
Query: 756 KKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN 815
+K TV + L + ++ + + F ++++ + ++
Sbjct: 420 QK-------IAPKFPG-------TVRQ-LFFK---KIRGQFLNP---QFQTDVVKPLRID 458
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
+ V LS + +R+ I + L I +DEP++ LD+ I + +R
Sbjct: 459 DIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513
Query: 876 V-DTGRTVV 883
+ +T
Sbjct: 514 ILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-13
Identities = 37/184 (20%), Positives = 71/184 (38%), Gaps = 23/184 (12%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKK------QETFTRI- 764
RPG + L+G +G GK+T + +LAG + G K Q FT++
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 765 -----SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
+ Q + P L+L E E ++ +++++L + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPE----DVKRYIKILQLENVLK 216
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 879
+ LS + +R I + V + DEP+S LD + + +R+ +
Sbjct: 217 RD---IEK--LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT 271
Query: 880 RTVV 883
+ V+
Sbjct: 272 KYVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 35/252 (13%), Positives = 62/252 (24%), Gaps = 83/252 (32%)
Query: 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMD----------------EFVP 45
L+G GK+T L LAGK GR +
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLED 162
Query: 46 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVY 105
A Q+ +I ++ + + ++ R K ++
Sbjct: 163 DIKAIIKPQYVDNIP-RAIKGPVQKVGELLKL-RMEKSPEDVKRYIKILQLEN------- 213
Query: 106 MKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA 165
+ ++ L SGG+ +R +G +
Sbjct: 214 -------------VLKRDIEKL------------------SGGELQRF-----AIGMSCV 237
Query: 166 -----LFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF------D 214
DE S+ LD IR + + +DL D
Sbjct: 238 QEADVYMFDEPSSYLDVKQRLNAAQIIRS-LLAPTKYVICV-------EHDLSVLDYLSD 289
Query: 215 DIILLSDAQIVY 226
+ ++ VY
Sbjct: 290 FVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 41/191 (21%), Positives = 63/191 (32%), Gaps = 56/191 (29%)
Query: 10 SGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLA 69
+GKTTL+ LAG L G+ +P+ + Q TVR+
Sbjct: 389 TGKTTLIKLLAGALKPD---EGQD----------IPKLNVSMKPQKIAPKFPGTVRQLFF 435
Query: 70 FSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGL 129
R + + + + +K L +
Sbjct: 436 KKIR-----------GQFLNPQFQTDV---------------------------VKPLRI 457
Query: 130 EVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQ 189
DD + D+ V+ +SGG+ +RV + PA +DE S LDS IR+
Sbjct: 458 ---DDII--DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512
Query: 190 NIHILNGTAVI 200
I TA I
Sbjct: 513 FILHNKKTAFI 523
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 2e-21
Identities = 37/193 (19%), Positives = 71/193 (36%), Gaps = 26/193 (13%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNITISGYPKKQETFT 762
L +SG R G + L+G +GAGK+TL+ +AG G I + + +
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LA 72
Query: 763 RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
Y Q PF V+ L + +E + ++ + L+
Sbjct: 73 LHRAYLSQ-QQTPPFATPVWHYLTLH----QHDKTRTEL----LNDVAGALALDDKLGRS 123
Query: 822 VGLPGESGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
+ LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 124 T-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 875 TVDTGRTVVCTIH 887
G +V + H
Sbjct: 179 LSQQGLAIVMSSH 191
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 7e-11
Identities = 43/259 (16%), Positives = 70/259 (27%), Gaps = 90/259 (34%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA---AYISQHDV 57
+ L+GP +GK+TLL +AG G + + G ++ + + A AY+SQ
Sbjct: 28 ILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALHRAYLSQQQT 83
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
V L ++
Sbjct: 84 PPFATPVWHYLTL------------------------HQHDKTRTELLNDV--------- 110
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV--------TTGEMMVGPALALFMD 169
+SGG+ +RV T + L L +D
Sbjct: 111 -----------AGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL-LLLD 158
Query: 170 EISTGLDSSTTFQIVNSIRQNIHILN--------GTAVISLLQPAPETYDL------FDD 215
E LD + Q + G A++ +DL
Sbjct: 159 EPMNSLD----------VAQQSALDKILSALSQQGLAIVMSS------HDLNHTLRHAHR 202
Query: 216 IILLSDAQIVYQGPRELVL 234
LL +++ G RE VL
Sbjct: 203 AWLLKGGKMLASGRREEVL 221
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 1e-20
Identities = 53/242 (21%), Positives = 98/242 (40%), Gaps = 32/242 (13%)
Query: 648 FSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDK---LM 704
FS+ R +Q + + F P+ + F +++ VD+ +E ++ K
Sbjct: 311 FSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF 370
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFT 762
L G R G + ++G +G GKTT + +LAG T G + ++T++ K Q
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ---- 424
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
I TVYE L + E+++ + + L
Sbjct: 425 YIK--------AEYEGTVYELLSKIDS-------SKLNSNFYKTELLKPLGIIDLYDRN- 468
Query: 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRT 881
+ LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 469 --VED--LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 524
Query: 882 VV 883
+
Sbjct: 525 AL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 14/185 (7%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNITISGYPKK--Q 758
+ + G++ ++G +G GKTT + +LAG+ + + I + Q
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ 165
Query: 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
F R+ + + +V + + L +VD + EE+++ +EL +
Sbjct: 166 NYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK---FEEVVKELELENVL 222
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
+ LS + +R+ IA L+ F DEP+S LD R V R +R +
Sbjct: 223 DRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE 277
Query: 879 GRTVV 883
G+ V+
Sbjct: 278 GKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 8e-07
Identities = 57/269 (21%), Positives = 94/269 (34%), Gaps = 78/269 (28%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
++GP GKTT + LAG + G+V ++ T AY Q+ E T
Sbjct: 387 IVGPNGIGKTTFVKMLAGVEE---PTEGKVEWDL----------TVAYKPQYIKAEYEGT 433
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
V E +L+++ + + ++
Sbjct: 434 VYE----------------LLSKIDSSKLNSNFYKT---EL------------------- 455
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 183
LK LG+ D V D +SGG+ +RV ++ A +DE S LD +
Sbjct: 456 LKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 510
Query: 184 VNSIRQNIHILNGTA-VISLLQPAPETYDLFDDIIL---LSDAQIVYQGPRELVLDFFES 239
+IR + TA V+ D+++ +SD IV++G
Sbjct: 511 SRAIRHLMEKNEKTALVVE------------HDVLMIDYVSDRLIVFEGEPGRHGRALPP 558
Query: 240 MGFKCPERKGVADFLQE--VTSRKDQQQY 266
M R+G+ FL +T R+D
Sbjct: 559 M----GMREGMNRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 45/213 (21%), Positives = 70/213 (32%), Gaps = 66/213 (30%)
Query: 3 LLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEM 62
++GP +GKTT + LAG+L L + D I
Sbjct: 121 GIVGPNGTGKTTAVKILAGQLIPNL---CEDNDSW------------------DNVIRAF 159
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKP-DPDIDVYMKAAATEGQEANVLT- 120
E + + E +D+ KA +G+ +L
Sbjct: 160 RGNELQNY---------------FERLKNGEIRPVVKPQYVDLLPKA--VKGKVRELLKK 202
Query: 121 -------DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFM 168
+ +K L LE V D + +SGG+ +RV + AL F
Sbjct: 203 VDEVGKFEEVVKELELEN-----VLDRELHQLSGGELQRV-----AIAAALLRKAHFYFF 252
Query: 169 DEISTGLDSSTTFQIVNSIRQNIHILN-GTAVI 200
DE S+ LD ++ IR + N G AV+
Sbjct: 253 DEPSSYLDIRQRLKVARVIR---RLANEGKAVL 282
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 6e-19
Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 29/181 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L G + G + ++G +G GKTT + +LAG T G I ++T++ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
I TVYE L +++S + E+++ + + L
Sbjct: 356 IK--------ADYEGTVYELLSKI----DASKLNSNF---YKTELLKPLGIIDLYDRE-- 398
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 882
E LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 399 -VNE--LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 883 V 883
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 41/189 (21%), Positives = 78/189 (41%), Gaps = 40/189 (21%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNITISGYPKK--QETFTRISGY 767
+ G++ ++G +G GK+T + +LAG+ G + + I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 768 CEQNDIH----SPFV---------TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL 814
+I +V V E L + +EE+++ +EL
Sbjct: 104 ---GEIRPVVKPQYVDLIPKAVKGKVIELL------------KKADETGKLEEVVKALEL 148
Query: 815 NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
+ + + LS + +R+ IA L+ N + F DEP+S LD R R +R
Sbjct: 149 ENVLEREI-----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR 203
Query: 875 TVDTGRTVV 883
+ G++V+
Sbjct: 204 LSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 4e-05
Identities = 55/269 (20%), Positives = 94/269 (34%), Gaps = 78/269 (28%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
++GP GKTT + LAG + G++ ++ + PQ YI E T
Sbjct: 317 IVGPNGIGKTTFVKMLAGVEE---PTEGKIEWDLTVA--YKPQ----YIKAD----YEGT 363
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
V E +L+++ + + ++
Sbjct: 364 VYE----------------LLSKIDASKLNSNFYKT-EL--------------------- 385
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 183
LK LG+ D D V +SGG+ +RV ++ A +DE S LD +
Sbjct: 386 LKPLGI---IDLY--DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 440
Query: 184 VNSIRQNIHILNGTA-VISLLQPAPETYDLFDDIIL---LSDAQIVYQGPRELVLDFFES 239
+IR + TA V+ D+++ +SD +V++G E
Sbjct: 441 SRAIRHLMEKNEKTALVVE------------HDVLMIDYVSDRLMVFEG--EPGKYGRAL 486
Query: 240 MGFKCPERKGVADFLQE--VTSRKDQQQY 266
R+G+ FL +T R+D
Sbjct: 487 PPM--GMREGMNRFLASIGITFRRDPDTG 513
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 2e-18
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 26/183 (14%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L +G + G + ++G +G GKTT +L G G +T I Y K Q F
Sbjct: 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFP- 341
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
+ TV + +L + T F EE+ + + L+ L +S V
Sbjct: 342 -----------NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNV- 383
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
+ LS + ++L IA L + +D+P+S LD IV + ++ + V
Sbjct: 384 ----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439
Query: 884 CTI 886
I
Sbjct: 440 FII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 4e-12
Identities = 39/184 (21%), Positives = 75/184 (40%), Gaps = 21/184 (11%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDI 773
+ + ++G +G GKTT++ +LAG + N K E R G +I
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRG----KEI 74
Query: 774 HSPFVTVYESLLYSAWLRLPPEVD--SETQKMFIEEIMELVELNPLRQSLVGLPGESG-- 829
++ F +Y + L + V+ S+ K + EI+ ++ + + L +
Sbjct: 75 YNYFKELYSNELKI--VHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLW 132
Query: 830 ------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
LS +RL +A L+ + D+P+S LD R + + +R + + V+
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVI 191
Query: 884 CTIH 887
H
Sbjct: 192 VVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 59/241 (24%)
Query: 3 LLLGPPCSGKTTLLLALAGKLDSKL-KFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGE 61
+LG GKTT+L LAG++ + +V + + F + Y +
Sbjct: 29 GVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKD-EVLKRFRGKEIYNYFKE------L 81
Query: 62 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTD 121
+ L + Q + ++ + + + D
Sbjct: 82 YSN--ELKIVHKIQ----YVEYASKFLKGTVNEIL---------------TKIDERGKKD 120
Query: 122 YYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLD 176
++L + + ++ +SGG +R+ +V +L D+ S+ LD
Sbjct: 121 EVKELLNMT-----NLWNKDANILSGGGLQRL-----LVAASLLREADVYIFDQPSSYLD 170
Query: 177 SSTTFQIVNSIRQNIHILNGTAVI------SLLQPAPETYDLFDDIILLSDAQIVYQGPR 230
+ +IR+ +L VI +L L D I ++ VY
Sbjct: 171 VRERMNMAKAIRE---LLKNKYVIVVDHDLIVLD------YLTDLIHIIYGESSVYGRVS 221
Query: 231 E 231
+
Sbjct: 222 K 222
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 48/267 (17%), Positives = 91/267 (34%), Gaps = 72/267 (26%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
+LGP GKTT L G++ + G VT + +Y Q + T
Sbjct: 299 ILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGT 346
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
V++ L +++ + + E+
Sbjct: 347 VQQYLENASK-DALSTSSWFFEEV------------------------------------ 369
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 183
K L L L + V +SGG+ +++ + A +D+ S+ LD + +
Sbjct: 370 TKRLNL---HRLL--ESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIV 424
Query: 184 VNSIRQNIHILNGTA-VISLLQPAPETYDL-FDDIILLSDAQIVYQGPRELVLDFFESMG 241
+I++ +I +DL ++D IV++G E +
Sbjct: 425 AKAIKRVTRERKAVTFIID--------HDLSI--HDYIADRIIVFKG--EPEKAGLATSP 472
Query: 242 FKCPERKGVADFLQE--VTSRKDQQQY 266
+ G+ +FL+E VT R+D +
Sbjct: 473 V--TLKTGMNEFLRELEVTFRRDAETG 497
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 3e-18
Identities = 43/209 (20%), Positives = 90/209 (43%), Gaps = 28/209 (13%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFT 762
+L +S G L G++GAGKTTL+++L T +G + + G + ++
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGYS 91
Query: 763 ------RISGYCEQNDIH---SPFVTVYESLL--YSAWLRLPPEVDSETQKMFIEEIMEL 811
I G+ + V + ++ + + ++D E + ++++L
Sbjct: 92 AETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDE-IRNEAHQLLKL 148
Query: 812 VELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
V ++ Q +G LST +++R+ IA L+ P ++ +DEP +GLD A ++
Sbjct: 149 VGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSI 203
Query: 872 VR--NTVDTGRTVVCTIHQPSIDIFESFD 898
+ + ++ H +I +F
Sbjct: 204 LDSLSDSYPTLAMIYVTHFIE-EITANFS 231
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 9e-11
Identities = 49/253 (19%), Positives = 79/253 (31%), Gaps = 75/253 (29%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDE-------------FVPQRTAA 50
L G +GKTTLL L SG V G + FV
Sbjct: 52 LYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLE 108
Query: 51 YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAA 110
+ V + + S + +G Y + + R
Sbjct: 109 KFQEG------ERVIDVVI-SGAFKSIG-VYQDIDDEIRN-------------------- 140
Query: 111 TEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA----- 165
LK++G+ + + +S G+K+RV M+ AL
Sbjct: 141 --------EAHQLLKLVGMSA-----KAQQYIGYLSTGEKQRV-----MIARALMGQPQV 182
Query: 166 LFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISL----LQPAPETYDLFDDIILLSD 221
L +DE + GLD +++ + A+I ++ F I+LL D
Sbjct: 183 LILDEPAAGLDFIARESLLSILDSLSDSYPTLAMI-YVTHFIEEITA---NFSKILLLKD 238
Query: 222 AQIVYQGPRELVL 234
Q + QG E +L
Sbjct: 239 GQSIQQGAVEDIL 251
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 3e-17
Identities = 34/178 (19%), Positives = 69/178 (38%), Gaps = 28/178 (15%)
Query: 715 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNITISGYPKKQETFTRISGYCEQND 772
G ++G +G+GKTTL+ ++G G I + + Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI-------RYSTNLP 81
Query: 773 IHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP--LRQSLVGLPGESG 829
VTV + + E+ + + E+++ ++L LR+ +
Sbjct: 82 EAYEIGVTVNDIVYL------YEELKGLDRDL-FLEMLKALKLGEEILRRK----LYK-- 128
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
LS Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ + H
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH 183
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 41/244 (16%), Positives = 74/244 (30%), Gaps = 80/244 (32%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ-RTAAYISQH-DVHIGE 61
+LGP SGKTTLL A++G L SG + NG + + R + + + ++
Sbjct: 35 ILGPNGSGKTTLLRAISGLLPY----SGNIFINGMEVRKIRNYIRYSTNLPEAYEIG--- 87
Query: 62 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTD 121
+TV + + +G+ E
Sbjct: 88 VTVNDIVYLYEELKGLDR---------DLFLEM--------------------------- 111
Query: 122 YYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLD 176
LK L L + + + +S GQ V ALA + +DE +D
Sbjct: 112 --LKALKL---GEEI-LRRKLYKLSAGQSVLVR-----TSLALASQPEIVGLDEPFENVD 160
Query: 177 SSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD------LFDDIILLSDAQIVYQG-- 228
++ I I++ ++ T++ + +
Sbjct: 161 AARRHVISRYIKE----YGKEGILV-------THELDMLNLYKEYKAYFLVGNRLQGPIS 209
Query: 229 PREL 232
EL
Sbjct: 210 VSEL 213
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.8 bits (201), Expect = 9e-16
Identities = 91/653 (13%), Positives = 179/653 (27%), Gaps = 215/653 (32%)
Query: 47 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVY- 105
T YI Q D + V F+ V SR +L R+ ++P ++ +
Sbjct: 108 MTRMYIEQRDRLYNDNQV-----FAKY--NV-SRLQPYLKL--RQALLELRPAKNVLIDG 157
Query: 106 MKAAATEGQEANVLTDYYLK-VLGLEVCDDTLVGDEMVRGI---SGGQKKRVTTGEMMVG 161
+ + G K + L+VC V +M I + T M+
Sbjct: 158 VLGS---G-----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 162 PALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLL--QPAPETYDLFDDIILL 219
L ++ D S+ +I+ IH + + LL +P + ++
Sbjct: 204 KLLYQIDPNWTSRSDHSS------NIKLRIHSIQ-AELRRLLKSKPYENCLLVLLNV--- 253
Query: 220 SDAQIVYQGPRELVLDFFESMGFKCP----ER-KGVADFLQEVTSRKDQQQYWVHKEMPY 274
+A+ + C R K V DFL T+ H M
Sbjct: 254 QNAKAW------------NAFNLSCKILLTTRFKQVTDFLSAATTTHISL---DHHSMTL 298
Query: 275 RFVTAQEFSEAFQSFTVGQKLADELRTPFDKCKSHPAALTTKMYGVGKKELLKANISREL 334
T E + + + D P + ++P L + E ++ ++
Sbjct: 299 ---TPDEVKSLLLKY-LDCRPQDL---PREVLTTNPRRL--SIIA----ESIRDGLAT-- 343
Query: 335 LLMKRNSFVYIF--KLTQLSSMALVSMTLFFRTKMHKDSVSDGGIYVGATFFAVMMTMFN 392
+++ ++ KLT +
Sbjct: 344 ----WDNWKHVNCDKLTTI----------------------------------------- 358
Query: 393 GMSDISMTIAKL-PVFYKQRDLRFYAAWAYALPAWIL----KIPISFLEVAVWVFLTYYV 447
I ++ L P Y++ + + + IP L + +W +
Sbjct: 359 ----IESSLNVLEPAEYRKM----FDRLS------VFPPSAHIPTILLSL-IWFDVIKSD 403
Query: 448 IGFDPNIGRLFKQFLLLLLVNQMASAL----FRFIA-----AAGRNMIVAMSFGSFVLLV 498
+ N +L K L+ + ++ A IV + +
Sbjct: 404 VMVVVN--KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD----HYNIPK 457
Query: 499 LFAFGGFVLSRDDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSWRKFTSNSNETLGVQVL 558
F + D Y+ S GH + ++
Sbjct: 458 TFDSDDLIPPYLD-------QYFYS-------------HIGHHLKN----------IEHP 487
Query: 559 KSRGFFPHAY----WYWLGLGATIGFVLLFNIGFTLSLTFLNQFEKPRAVISDESES--- 611
+ F + + L I L L Q + + I D
Sbjct: 488 ERMTLFRMVFLDFRF----LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 612 --NDLGNRIGGTAQLSTHGSNSSHKTC-------SESEDITVKDSFSQLLSQR 655
N + + + ++ + S + T +E E I +++ Q+ QR
Sbjct: 544 LVNAILDFL---PKIEENLICSKY-TDLLRIALMAEDEAI-FEEAHKQV--QR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 1e-10
Identities = 89/659 (13%), Positives = 184/659 (27%), Gaps = 213/659 (32%)
Query: 594 FLNQFEK----------PRAVISDESESNDL---GNRIGGTAQL----STHGSNSSHKTC 636
F + F P++++S E E + + + + GT +L + K
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 637 SESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVT----YSVDMPKE 692
E ++ L+S + QP + E +++ Y+V +
Sbjct: 84 EEVLR----INYKFLMSP--IKTEQRQPSMM-TRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 693 MKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYITGNITI 751
L L+ L RP + GV G+GKT + +DV K
Sbjct: 137 YL---KLRQALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLSYKV---------- 176
Query: 752 SGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMEL 811
Q F ++ WL L +S E ++E+
Sbjct: 177 ------QCKM--------------DF-KIF-------WLNL-KNCNSP------ETVLEM 201
Query: 812 VELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAAAIVMR 870
L L + S +L I + A + +P + L +V+
Sbjct: 202 --LQKL-LYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENCL------LVLL 251
Query: 871 TVRN-----TVDTG-RTVVCTIHQPSIDIFESFDEGIPGVENIKDGYNPATWMLEVTAKS 924
V+N + + ++ T + D + +++ P + + K
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKY 310
Query: 925 QELTLEIDFTD----IYKGSELYRRNKALIEELSRPAPGSKDLYFPTHYTQSFFMQCVAC 980
L+ D + + ++I E R
Sbjct: 311 ----LDCRPQDLPREVLTTNPRR---LSIIAESIRDGLA--------------------- 342
Query: 981 LWKQHWSYWRNPPYTAVRFLFTTVIALTFGTMFWDMGTKMKRNQDLFNAMGSMYTAVFFL 1040
W W++ + TT+I + + + + +F+ + +VF
Sbjct: 343 ----TWDNWKHVNCDKL----TTIIESSLNVL------EPAEYRKMFDRL-----SVF-- 381
Query: 1041 GAQYCSSVQPVVAVERAVFCREKGAGMYSAMPYAFAQVMIEIPYIFVLSSVYGIIVYAMI 1100
P + + ++ + + V++ + Y+++
Sbjct: 382 --------PPSAHIPTILLSL-----IWFDVIKSDVMVVVN-----------KLHKYSLV 417
Query: 1101 GFEWIAAKFFWYLFFMFFSLLYFTFYGMMTVAMTPNHHIAAIVSILFYGLWNVFSGFVIP 1160
+ + + ++ L + + H +IV Y + F
Sbjct: 418 -EKQ-PKESTISIPSIYLELK-------VKLENEYALH-RSIVD--HYNIPKTFD----S 461
Query: 1161 RTRIPLWWRWY-YWANPVAWTMYGLVASQFGDVEDKMESGETVKQFVRSYFDFKHDFLG 1218
IP + Y Y + L +E E + F + DF FL
Sbjct: 462 DDLIPPYLDQYFYS-----HIGHHL---------KNIEHPERMTLFRMVFLDF--RFLE 504
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 8e-10
Identities = 95/699 (13%), Positives = 177/699 (25%), Gaps = 205/699 (29%)
Query: 155 TGEMMVG--PALALFMDEISTGLDSSTTFQIVNSIRQNI------HILNGTAVISLLQPA 206
TGE L++F D D + + + + HI+
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCK---DVQDMPKSILSKEEIDHIIM--------SKD 59
Query: 207 PE--TYDLFDDIILLSDAQIVYQGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQ 264
T LF +L ++V + F E + R FL + +Q
Sbjct: 60 AVSGTLRLFW-TLLSKQEEMVQK--------FVEEV-----LRINY-KFLMSPIKTEQRQ 104
Query: 265 QYWVHKEMPYR-FVTAQEF----SEAFQSFTVG-QKLADELRTPFDKCKSHPAALTTKMY 318
M R ++ ++ ++ F + V + +LR + + L +
Sbjct: 105 -----PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 319 GVGKKELLKANISRELLLMKRNSF-VYIFKLTQLSSMALVSMTLFFRTKMHKDSVSDGGI 377
G GK + ++ + + F ++ L +S V L
Sbjct: 160 GSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML---------------- 202
Query: 378 YVGATFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEV 437
+ + SD S I + R + Y L +
Sbjct: 203 ---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---------ENCLLVL 250
Query: 438 A-VWVFLTYYVIGFDPNIGRLFKQFLL---LLLVNQMASALFRFIAAAGRNMIV----AM 489
V + + F L +LL + + F++AA I +M
Sbjct: 251 LNVQ----------NAKA---WNAFNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSM 296
Query: 490 SFGSFVLLVLFA-FGG---------------FVLS------RDDIKKWWVWGYWCSPMMY 527
+ + L + LS RD + W W
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT---WDNWKHVNCD 353
Query: 528 AQNAIVANEFFGHSWRKFTSNSNETLGVQVLKSR----GFFPHAYW--------YWLGLG 575
I+ +S L + FP + W
Sbjct: 354 KLTTII-------------ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW---- 396
Query: 576 ATIGFVLLFNIGFTLSLTFLNQFEKPRAVISDESES----NDLGNRIGGTAQLSTHGSNS 631
F++ + + +N+ K V ES + L
Sbjct: 397 --------FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--------YLELKVKLE 440
Query: 632 S----HKTCSESEDITVKDSFSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSV 687
+ H++ + +I L+ P H L E +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLI----------PPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 688 DMPKEMKLQ-GILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT 746
+ + + L LE K+ + + +L TL + + YI
Sbjct: 491 TLFRMVFLDFRFLEQKIR-HDSTAWNASGSIL-----------NTLQQL---KFYKPYIC 535
Query: 747 GNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLL 785
N Y + E+N I S + + L
Sbjct: 536 DNDPK--YERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 1e-07
Identities = 56/399 (14%), Positives = 119/399 (29%), Gaps = 121/399 (30%)
Query: 16 LLALAGKLDSKL--KFSGR----VTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLA 69
LL L ++K F+ +T + +F+ T +IS + +T E +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKS 305
Query: 70 FSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLG- 128
+ + R L P + + A + ++ D + V
Sbjct: 306 LLLKY--LDCRPQDLPREVL-----TTNP---RRLSIIAESI--RDGLATWDNWKHVNCD 353
Query: 129 -----LEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDE--ISTGLDSSTTF 181
+E + L E +K L++F I T
Sbjct: 354 KLTTIIESSLNVLEPAEY--------RKMFD--------RLSVFPPSAHIPTI-----LL 392
Query: 182 QIV--NSIRQNI-HILNGTAVISLL--QPAPETY---DLFDDIILLSD------AQIV-- 225
++ + I+ ++ ++N SL+ QP T ++ ++ + + IV
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 226 YQGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWVHKEMPYRFVTAQ----- 280
Y P+ F+S P D QY+ + + + +
Sbjct: 453 YNIPKT-----FDSDDLIPPY----LD------------QYF-YSHIGHHLKNIEHPERM 490
Query: 281 -EFSEAFQSFT-VGQKL-------------ADELRTPFDK-----CKSHPA------ALT 314
F F F + QK+ + L+ C + P A+
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFYKPYICDNDPKYERLVNAIL 549
Query: 315 TKMYGVGKKELLKANISR--ELLLMKRNSFVYIFKLTQL 351
+ + + L+ + + + LM + ++ Q+
Sbjct: 550 DFLPKIEEN-LICSKYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 27/198 (13%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNITISGYPKKQETFT 762
L G+S + + G +++G SG+GK+TL+ +L T G + +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 763 R---ISGYCEQ--NDIHSPFVTVYES----LLYSAWLRLPPEVDSETQKMFIEEIMELVE 813
R + G+ Q I P +T E+ +L + K E ++ +
Sbjct: 80 RNRKL-GFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAKERGEYLLSELG 129
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
L P E LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 130 LGDKLSRK---PYE--LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184
Query: 874 NTVDTGRTVVCTIHQPSI 891
+ G ++V H+ +
Sbjct: 185 KINEGGTSIVMVTHEREL 202
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 40/213 (18%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNITISGYPK 756
E+ + L V+ + G ++MG SG+GK+T+++++ + T G NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 757 KQETFTR---ISGYCEQ--NDIHSPFVTVYES----LLYSAWLRLPPEVDSETQKMFIEE 807
+ T R I G+ Q N I P +T E+ L++ + + +
Sbjct: 75 DELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSG-------EERRKR 124
Query: 808 IMELVELNPLRQSLVGL--------PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 859
+E +++ L P + LS Q++R+ IA L NP II D+PT
Sbjct: 125 ALECLKM-------AELEERFANHKPNQ--LSGGQQQRVAIARALANNPPIILADQPTWA 175
Query: 860 LDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSI 891
LD++ +M+ ++ + G+TVV H ++
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 34/196 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L VS G + G +G+GK+TL+ ++AG T +G++ G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVLYDGERKKGYEIRR 78
Query: 764 ISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPE---VDSETQKMFIEEIMELVELNPLRQ 819
G Q F V++ + ++ + D + + +++ ME
Sbjct: 79 NIGIAFQYPEDQFFAERVFDEVAFA------VKNFYPDRDPVPL-VKKAME--------- 122
Query: 820 SLVGLPGES-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 872
VGL +S LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 123 -FVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 181
Query: 873 RNTVDTGRTVVCTIHQ 888
G+TV+ H
Sbjct: 182 EKWKTLGKTVILISHD 197
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 8e-07
Identities = 46/242 (19%), Positives = 82/242 (33%), Gaps = 67/242 (27%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ--RTAAYISQH-DVHIG 60
+ G SGK+TLL +AG + SG V Y+G + + R Q+ +
Sbjct: 38 VAGNTGSGKSTLLQIVAGLI---EPTSGDVLYDG--ERKKGYEIRRNIGIAFQYPEDQFF 92
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
V + +AF+ + + K+A
Sbjct: 93 AERVFDEVAFAVKNFYPD------RDPVPLVKKA-------------------------- 120
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA---------LFMDEI 171
++ +GL+ D + +SGG+K+RV A+A L +DE
Sbjct: 121 ---MEFVGLDFDS---FKDRVPFFLSGGEKRRV---------AIASVIVHEPDILILDEP 165
Query: 172 STGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PR 230
GLD ++ + + G VI + + D +++L + V+ G
Sbjct: 166 LVGLDREGKTDLLRIVEK-WK-TLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRM 223
Query: 231 EL 232
E
Sbjct: 224 EF 225
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 2e-13
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 35/199 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 761
L G++ + G +TA++G +G GK+TL G + + +G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 762 TRIS---GYCEQNDIHSP---FV--TVYESLLYSAWLRLPPE---VDSETQKMFIEEIME 810
++ G Q+ P +VY+ + + + + + ++ ++
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSFG------AVNMKLPEDEIRKRVDNALK 129
Query: 811 LVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
+ L+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+
Sbjct: 130 RTGIEHLKDKP---THC--LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK 184
Query: 871 TVRN-TVDTGRTVVCTIHQ 888
+ + G T++ H
Sbjct: 185 LLVEMQKELGITIIIATHD 203
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 49/273 (17%), Positives = 95/273 (34%), Gaps = 74/273 (27%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQH-------- 55
+LG GK+TL G L SGR+ ++ +D ++ + +
Sbjct: 39 ILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKGIMKLRESIGIVFQDP 93
Query: 56 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQE 115
D + +V + ++F A + E+ +R A
Sbjct: 94 DNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA--------------------- 127
Query: 116 ANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA---------L 166
LK G+E + D+ +S GQKKRV A+A L
Sbjct: 128 --------LKRTGIEH-----LKDKPTHCLSFGQKKRV---------AIAGVLVMEPKVL 165
Query: 167 FMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVY 226
+DE + GLD +I+ + + + G +I D++ ++ + +++
Sbjct: 166 ILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL 224
Query: 227 QGPRELVL---DFFESMGFKCPERKGVADFLQE 256
QG + V + + + P + + L+E
Sbjct: 225 QGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 8e-13
Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 39/201 (19%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ---- 758
L+GVS + G +T ++G +G+GK+TL++V+ G + G + N I+ +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 759 ---ETFTRISGYCEQNDIHSPF--VTVYE-----------SLLYSAWLRLPPEVDSETQK 802
TF Q P +TV E S L S + + + E +
Sbjct: 83 GIVRTF--------QT-PQ-PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE 132
Query: 803 MFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
+I+E ++L+ L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 133 K-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
Query: 863 RAAAIVMRTVRNTVDTGRTVV 883
A + V G T +
Sbjct: 187 GLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 49/199 (24%), Positives = 70/199 (35%), Gaps = 47/199 (23%)
Query: 2 TLLLGPPCSGKTTLLLALAG--KLDSKLKFSGRVTYNGHGMDEFVPQRTAAY-IS---QH 55
TL++GP SGK+TL+ + G K D GRV + + P Y I Q
Sbjct: 36 TLIIGPNGSGKSTLINVITGFLKADE-----GRVYFENKDITNKEPAELYHYGIVRTFQT 90
Query: 56 DVHI-GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQ 114
EMTV E L C G + + ++E M A +
Sbjct: 91 -PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE-----------MVEKAFK-- 136
Query: 115 EANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE----MMVGPALALFMDE 170
L+ L L + D +SGGQ K V E +M P + + MDE
Sbjct: 137 --------ILEFLKLSH-----LYDRKAGELSGGQMKLV---EIGRALMTNPKM-IVMDE 179
Query: 171 ISTGLDSSTTFQIVNSIRQ 189
G+ I N + +
Sbjct: 180 PIAGVAPGLAHDIFNHVLE 198
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 56/244 (22%), Positives = 91/244 (37%), Gaps = 70/244 (28%)
Query: 671 LPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKT 730
L F+ + F+ V +S +E L VS PG AL+G SGAGK+
Sbjct: 47 LRFQKGRIEFENVHFSYADGRE------------TLQDVSFTVMPGQTLALVGPSGAGKS 94
Query: 731 TLM-------DVLAGRKTGGYITGNITISGYPKK---QETFTRISGYCEQ-----NDIHS 775
T++ D+ +G I I G Q + G Q ND
Sbjct: 95 TILRLLFRFYDISSGC---------IRIDGQDISQVTQASLRSHIGVVPQDTVLFND--- 142
Query: 776 PFVTVYESLLY---SAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP------- 825
T+ +++ Y +A +E+ + + +++ P
Sbjct: 143 ---TIADNIRYGRVTAGN---------------DEVEAAAQAAGIHDAIMAFPEGYRTQV 184
Query: 826 GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
GE G LS +++R+ IA ++ P II +DE TS LD + ++ V RT +
Sbjct: 185 GERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL-AKVCANRTTI 243
Query: 884 CTIH 887
H
Sbjct: 244 VVAH 247
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 4e-11
Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 51/245 (20%)
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTA 720
++ ++ F +V +S + L ++ G A
Sbjct: 1 GLESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRT----------LKSINFFIPSGTTCA 50
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYPKK---QETFTRISGYCEQ-----N 771
L+G +G+GK+T+ +L R Y G+I I G + + I G Q N
Sbjct: 51 LVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN 106
Query: 772 DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP------ 825
+ T+ ++LY T EE+++ + L + LP
Sbjct: 107 E------TIKYNILYG--------KLDATD----EEVIKATKSAQLYDFIEALPKKWDTI 148
Query: 826 -GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 882
G G LS +R+R+ IA L+ +P I+ DE TS LD++ + + V + + RT+
Sbjct: 149 VGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTL 207
Query: 883 VCTIH 887
+ H
Sbjct: 208 IIIAH 212
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 6e-11
Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 51/202 (25%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
L +S +P + A G SG GK+T+ AG ITI G P
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQPIDN 68
Query: 759 ETFTRIS-----GYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIME 810
+ + G+ Q+ + T+ E+L Y L + E ++ +
Sbjct: 69 --ISLENWRSQIGFVSQD----SAIMAGTIRENLTYG----LEGDYTDE-------DLWQ 111
Query: 811 LVELNPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
+++L R + +P GE G +S QR+RL IA + NP I+ +DE T+ LD
Sbjct: 112 VLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLD 171
Query: 862 ARAAAIVMRTVRNTVDTGRTVV 883
+ + ++V + + +++ GRT +
Sbjct: 172 SESESMVQKAL-DSLMKGRTTL 192
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 6e-11
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 48/210 (22%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 752
D ++L+ ++ + + G + ++G SG+GK+TL G+ + I
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 753 GYPKKQETFT---RISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIE 806
G+ R G Q+ + ++ +++ + P + +E
Sbjct: 70 GHDLALADPNWLRRQVGVVLQD----NVLLNRSIIDNISLAN-----PGMS-------VE 113
Query: 807 EIMELVELNPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPT 857
+++ +L + L GE G LS QR+R+ IA LV NP I+ DE T
Sbjct: 114 KVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEAT 173
Query: 858 SGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
S LD + ++MR + GRTV+ H
Sbjct: 174 SALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 7e-10
Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 30/165 (18%)
Query: 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTR 763
+LLN + + G +G GK+TLM +A + G+ T ++ T
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPT--------QEECRT--- 497
Query: 764 ISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL- 821
Y E + D +V + + E T++ I++ + ++
Sbjct: 498 --VYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFTDEMIAMP 545
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
+ S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 I-----SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 9e-04
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 822 VGLPGE-------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
+GL E GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 887 LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 48/207 (23%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
L G++ + G AL+G SG GK+T + D L G ++I G +
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM---------VSIDGQDIRT 456
Query: 759 ---ETFTRISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV 812
I G Q P + T+ E++ Y + T +EI + V
Sbjct: 457 INVRYLREIIGVVSQE----PVLFATTIAENIRYGR--------EDVTM----DEIEKAV 500
Query: 813 ELNPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+ ++ LP GE G LS Q++R+ IA LV NP I+ +DE TS LD
Sbjct: 501 KEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 560
Query: 864 AAAIVMRTVRNTVDTGRTVVCTIHQPS 890
+ A+V + GRT + H+ S
Sbjct: 561 SEAVVQAALDK-AREGRTTIVIAHRLS 586
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 4e-08
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 40/201 (19%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
L G+S + G AL+G SG GK+T++ D +AG + + G KQ
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEIKQ 1099
Query: 759 ETFTRISGYCEQNDIHS--PFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE 813
+ Q I S P + ++ E++ Y V S + I +
Sbjct: 1100 ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYG----DNSRVVSYEE---IVRAAKEAN 1149
Query: 814 LNPLRQSL-------VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
++ SL VG G + LS Q++R+ IA LV P I+ +DE TS LD +
Sbjct: 1150 IHQFIDSLPDKYNTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 867 IVMRTVRNTVDTGRTVVCTIH 887
+V + + GRT + H
Sbjct: 1209 VVQEAL-DKAREGRTCIVIAH 1228
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 8e-09
Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 47/205 (22%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
L G++ PG +TAL+G +G+GK+T+ G+ + + G P Q
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 759 ---ETFTRISGYCEQNDIHSP--F-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV 812
Q P F + E++ Y + T EEI +
Sbjct: 86 YDHHYLHTQVAAVGQE----PLLFGRSFRENIAYGL-------TRTPTM----EEITAVA 130
Query: 813 ELNPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+ + G P GE+G LS QR+ + +A L+ P ++ +D TS LDA
Sbjct: 131 MESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG 190
Query: 864 AAAIVMRTV-RNTVDTGRTVVCTIH 887
V R + + RTV+
Sbjct: 191 NQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 720 ALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFTRISGYCEQNDIHSP 776
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 777 FVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836
++VY ++ Y LR V+ + + + E+ E + + L P LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRK---PAR--LSGGERQ 133
Query: 837 RLTIAVELVANPSIIFMDEPTSGLDAR 863
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 5e-08
Identities = 45/184 (24%), Positives = 71/184 (38%), Gaps = 54/184 (29%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
L ++ G AL+G SG+GK+T+ D+ G I + G+ ++
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---------ILMDGHDLRE 409
Query: 759 ETFTRIS-----GYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEI 808
+T S Q ND TV ++ Y+ E S E+I
Sbjct: 410 --YTLASLRNQVALVSQNVHLFND------TVANNIAYAR-----TEEYSR------EQI 450
Query: 809 MELVELNPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSG 859
E + + + GE+G LS QR+R+ IA L+ + I+ +DE TS
Sbjct: 451 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510
Query: 860 LDAR 863
LD
Sbjct: 511 LDTE 514
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 1e-07
Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 54/184 (29%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 758
L+ VS + G AL+G SG+GK+T+ DV +G I + G+ +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS---------ICLDGHDVRD 409
Query: 759 ETFTRIS-----GYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEI 808
+ + Q ND T+ ++ Y+A E E +I
Sbjct: 410 --YKLTNLRRHFALVSQNVHLFND------TIANNIAYAA----EGEYTRE-------QI 450
Query: 809 MELVELNPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSG 859
+ + + +P GE+G LS QR+R+ IA L+ + ++ +DE TS
Sbjct: 451 EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSA 510
Query: 860 LDAR 863
LD
Sbjct: 511 LDTE 514
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 33/170 (19%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
+ GVS R G + L+G SG+GKTT++ ++AG R T G ++ I G + T
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG----DVWIGG-----KRVTD 81
Query: 764 ISGYCEQNDIHSPFV----------TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE 813
+ + ++ V TVY+++ + + P+ + + + + E++ +
Sbjct: 82 LPPQ--KRNVG--LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMR 134
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
L P E LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 135 LESYANRF---PHE--LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-07
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 51/188 (27%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 752
+++ +L ++ + G A +G+SG GK+TL+ DV +G+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 753 GYPKKQETFTRIS-----GYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMF 804
G+ K F S G +Q+ + TV E++L P ++
Sbjct: 402 GHNIKD--FLTGSLRNQIGLVQQD----NILFSDTVKENILLGR-----PTA-TD----- 444
Query: 805 IEEIMELVELNPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDE 855
EE++E ++ ++ LP GE G LS Q++RL+IA + NP I+ +DE
Sbjct: 445 -EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE 503
Query: 856 PTSGLDAR 863
TS LD
Sbjct: 504 ATSALDLE 511
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 28/170 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-------TGNITISGYPK 756
L+ V+ G ++G SGAGKTT M ++AG + G + N + P+
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 757 KQET---FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE 813
++ F Q P +T +E++ + L E +K +EE+ ++++
Sbjct: 81 DRKIGMVF--------QTWALYPNLTAFENIAFP--LTNMKMSKEEIRKR-VEEVAKILD 129
Query: 814 LNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
++ + L P E LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 130 IHHV---LNHFPRE--LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
LN +S + PG + ++G SG GKTTL+ LAG + G I+ TI
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 763 RISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
R GY Q P +TVY ++ Y L ++ ++ IE ++EL ++ L
Sbjct: 80 RRLGYLVQE--GVLFPHLTVYRNIAYG--LGNGKGRTAQERQR-IEAMLELTGISELAGR 134
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
P E LS Q++R +A L +P +I +DEP S LD +
Sbjct: 135 Y---PHE--LSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 8e-07
Identities = 42/206 (20%), Positives = 77/206 (37%), Gaps = 52/206 (25%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L +S + PG L+G +G+GK+TL+ G I I G
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV----------- 82
Query: 766 GYCEQNDIHSPFVTVY-----------ESLLYSAWLRL---PPEVDSETQKMFIEEIMEL 811
S +T+ + ++S R P S+ + I ++ +
Sbjct: 83 ------SWDS--ITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE---IWKVADE 131
Query: 812 VELNPLRQSLVGLPG-------ESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
V L R + PG + G LS ++ + +A +++ I+ +DEP++ LD
Sbjct: 132 VGL---RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 188
Query: 863 RAAAIVMRTVRNTVDTGRTVVCTIHQ 888
I+ RT++ TV+ +
Sbjct: 189 VTYQIIRRTLKQAF-ADCTVILCEAR 213
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
LN VS G + ++G SGAGK+TL+ + R T G + ++ + + T
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 763 RIS-GYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEE-IMELVELNPLR 818
R G Q N + S TV+ ++ L L T K ++ + EL+ L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LEL-----DNTPKDEVKRRVTELLSL---- 150
Query: 819 QSLVGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
VGL + S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 151 ---VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 52/198 (26%), Positives = 79/198 (39%), Gaps = 50/198 (25%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---- 753
+ + +L GV+ G + ALMG +GAGK+TL +LAG Y + G I + G
Sbjct: 14 DGE-TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENIL 70
Query: 754 -----------------YPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEV 796
YP + G VT+ L + +L EV
Sbjct: 71 ELSPDERARKGLFLAFQYP------VEVPG-----------VTIANFLRLALQAKLGREV 113
Query: 797 DSETQKMFIEEIMELVELNP--LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 854
+++ +EL++ + L + L G S ++KR I LV P+ +D
Sbjct: 114 GVAEFWTKVKKALELLDWDESYLSRYL-----NEGFSGGEKKRNEILQLLVLEPTYAVLD 168
Query: 855 EPTSGLDARAAAIVMRTV 872
E SGLD A +V R V
Sbjct: 169 ETDSGLDIDALKVVARGV 186
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 4e-06
Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 14/147 (9%)
Query: 767 YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826
++ +A ++ + + E+V + + +
Sbjct: 180 SGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVW 239
Query: 827 ESG------LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
E LS +R L +A L S++ +DEPT LD ++ +
Sbjct: 240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 299
Query: 875 TVDTGRTVVCTIHQPSIDIFESFDEGI 901
+ V+ H ++ ++ D I
Sbjct: 300 YLKKIPQVILVSHDE--ELKDAADHVI 324
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 5e-06
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 40/199 (20%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNIT----- 750
+ + G+ G + L+G +GAGKTT + +AG R G I +IT
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 751 ------ISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMF 804
I+ P+ + F P +TVYE+L+ A+ R D E K
Sbjct: 77 VINRMGIALVPEGRRIF--------------PELTVYENLMMGAYNRK----DKEGIKRD 118
Query: 805 IEEIMELV-ELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+E I L L + L G LS +++ L I L++ P ++ MDEP+ GL
Sbjct: 119 LEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPI 173
Query: 864 AAAIVMRTVRNTVDTGRTV 882
+ V ++ G T+
Sbjct: 174 LVSEVFEVIQKINQEGTTI 192
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 61/292 (20%), Positives = 93/292 (31%), Gaps = 124/292 (42%)
Query: 6 GPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVR 65
G GK++LL AL ++D K G V G + AY+ Q I ++R
Sbjct: 38 GQVGCGKSSLLSALLAEMD---KVEGHVAIKG----------SVAYVPQQ-AWIQNDSLR 83
Query: 66 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLK 125
E + F G + + YY
Sbjct: 84 ENILF-------GCQLE-------------------------------------EPYYRS 99
Query: 126 VLGLEVC------------DDTLVGDEMVRGI--SGGQKKRVTTGEMMVGPALA------ 165
V ++ C D T +G+ +G+ SGGQK+RV +LA
Sbjct: 100 V--IQACALLPDLEILPSGDRTEIGE---KGVNLSGGQKQRV---------SLARAVYSN 145
Query: 166 ----LFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVI------SLLQPAPETYDLFDD 215
LF D +S +D+ I ++ +L I S L D
Sbjct: 146 ADIYLFDDPLS-AVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQV-------DV 197
Query: 216 IILLSDAQIVYQGP-RELVLDFFESMGFKCPERKG-VADFLQEVTSRKDQQQ 265
II++S +I G +EL+ R G A+FL+ S
Sbjct: 198 IIVMSGGKISEMGSYQELL------------ARDGAFAEFLRTYASHHHHHH 237
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 55/193 (28%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---------- 753
L G+S PG + A+MG +G+GK+TL LAGR+ Y +T G + G
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLLALSPED 93
Query: 754 -----------YPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAW-----LRLPPEVD 797
YP I G V+ L +A R +D
Sbjct: 94 RAGEGIFMAFQYP------VEIPG-----------VSNQF-FLQTALNAVRSYRGQETLD 135
Query: 798 SETQKMFIEEIMELVELNP--LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 855
+ +EE + L+++ L +S+ G S ++KR I V P + +DE
Sbjct: 136 RFDFQDLMEEKIALLKMPEDLLTRSV-----NVGFSGGEKKRNDILQMAVLEPELCILDE 190
Query: 856 PTSGLDARAAAIV 868
SGLD A +V
Sbjct: 191 SDSGLDIDALKVV 203
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 26/165 (15%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L+ +S G ++G +GAGKT ++++AG G I ++ ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEE----IMELVELNPLR 818
+ QN P + V ++L + +R+ +K+ + +++ L
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFG--MRM--------KKIKDPKRVLDTARDLKIEHLL 121
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
P LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 122 DRN---PLT--LSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 5e-05
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 34/163 (20%)
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY------PKKQET---FTRISGYCEQ 770
L+G SG+GK+TL+ +AG T G I PK + F Q
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPKDRNVGLVF--------Q 82
Query: 771 NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGL 830
N P +TVY+++ + LR + E + E+ +++ ++ L L P + L
Sbjct: 83 NWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKL---LNRYPWQ--L 134
Query: 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 871
S Q++R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 135 SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 50/270 (18%), Positives = 85/270 (31%), Gaps = 118/270 (43%)
Query: 6 GPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVR 65
G +GKT+LL+ + G+L+ G++ ++G ++ SQ I T++
Sbjct: 41 GSTGAGKTSLLMMIMGELE---PSEGKIKHSG----------RISFCSQF-SWIMPGTIK 86
Query: 66 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLK 125
E + F G YD Y
Sbjct: 87 ENIIF-------GVSYD-------------------------------------EYRYRS 102
Query: 126 VLGLEVC------------DDTLVGDEMVRGI--SGGQKKRVTTGEMMVGPALA------ 165
V ++ C D+ ++G+ GI SGGQ+ R+ +LA
Sbjct: 103 V--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI---------SLARAVYKD 148
Query: 166 ----LFMDEISTGLDSSTTFQIVNS-IRQNIHILNGTAVI------SLLQPAPETYDLFD 214
L LD T +I S + + ++ I L+ A D
Sbjct: 149 ADLYLLDSPFGY-LDVLTEKEIFESCVCK---LMANKTRILVTSKMEHLKKA-------D 197
Query: 215 DIILLSDAQIVYQGP-RELV---LDFFESM 240
I++L + + G EL DF +
Sbjct: 198 KILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 7e-04
Identities = 38/197 (19%), Positives = 73/197 (37%), Gaps = 45/197 (22%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 764 ISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
IS +C Q ++ T+ E++++ +++ L +
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIF-------------GVSYDEYRYRSVIKACQLEED 112
Query: 821 LVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
+ GE G LS QR R+++A + + + +D P LD + +
Sbjct: 113 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 172
Query: 872 VRNTVDTGRTVVCTIHQ 888
+ +T + +
Sbjct: 173 CVCKLMANKTRILVTSK 189
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 34/163 (20%)
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY------PKKQE---TFTRISGYCEQ 770
L+G SG GKTT + ++AG + T G I PK + F Q
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDRNISMVF--------Q 90
Query: 771 NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGL 830
+ P +TVYE++ + ++ + + + EL+++ L L P + L
Sbjct: 91 SYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL---LNRYPAQ--L 142
Query: 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 871
S QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 49/270 (18%), Positives = 86/270 (31%), Gaps = 119/270 (44%)
Query: 6 GPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVR 65
G +GKT+LL+ + G+L+ G++ ++G ++ SQ + I T++
Sbjct: 71 GSTGAGKTSLLMMIMGELE---PSEGKIKHSG----------RISFCSQ-NSWIMPGTIK 116
Query: 66 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLK 125
E + +G YD Y
Sbjct: 117 ENI--------IGVSYD-------------------------------------EYRYRS 131
Query: 126 VLGLEVC------------DDTLVGDEMVRGI--SGGQKKRVTTGEMMVGPALA------ 165
V ++ C D+ ++G+ GI SGGQ+ R+ +LA
Sbjct: 132 V--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI---------SLARAVYKD 177
Query: 166 ----LFMDEISTGLDSSTTFQIVNS-IRQNIHILNGTAVI------SLLQPAPETYDLFD 214
L LD T +I S + + ++ I L+ A D
Sbjct: 178 ADLYLLDSPFG-YLDVLTEKEIFESCVCK---LMANKTRILVTSKMEHLKKA-------D 226
Query: 215 DIILLSDAQIVYQGP-RELV---LDFFESM 240
I++L + + G EL DF +
Sbjct: 227 KILILHEGSSYFYGTFSELQNLRPDFSSKL 256
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 38/198 (19%), Positives = 77/198 (38%), Gaps = 48/198 (24%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 764 ISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQ 819
IS +C Q + ++ T+ E+++ ++ + +++ +L + +
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSY-----------DEYRYRSVIKACQLEEDISK 144
Query: 820 SLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
GE G LS QR R+++A + + + +D P LD +
Sbjct: 145 ----FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 200
Query: 871 TVRNTVDTGRTVVCTIHQ 888
+ + +T + +
Sbjct: 201 SCVCKLMANKTRILVTSK 218
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 826 GESGLSTEQR----KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
GE RL +++ L S++ +DEPT LD ++ + +
Sbjct: 61 GER-----IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ 115
Query: 882 VVCTIH 887
V+ H
Sbjct: 116 VILVSH 121
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 34/163 (20%)
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY------PKKQET---FTRISGYCEQ 770
L+G SG GKTT + +LAG T G I PK +E F Q
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPKYREVGMVF--------Q 82
Query: 771 NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGL 830
N P +TV+E++ + LR E +K + EI + ++ L L P + L
Sbjct: 83 NYALYPHMTVFENIAFP--LRARRISKDEVEKR-VVEIARKLLIDNL---LDRKPTQ--L 134
Query: 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 871
S Q++R+ +A LV P ++ DEP S LDA R MR
Sbjct: 135 SGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 45/204 (22%), Positives = 83/204 (40%), Gaps = 36/204 (17%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-KKQETFTRI 764
L GVS R G + +++G SG+GK+T + + + G I ++G
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQ 79
Query: 765 SGYCEQNDIHS---------------PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIM 809
++N + +TV E+++ + P +V ++ E +
Sbjct: 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-----PIQVLGLSKHDARERAL 134
Query: 810 ELVELNPLRQSLVGLPGE------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+ + VG+ LS Q++R++IA L P ++ DEPTS LD
Sbjct: 135 KYLAK-------VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
Query: 864 AAAIVMRTVRNTVDTGRTVVCTIH 887
V+R ++ + G+T+V H
Sbjct: 188 LVGEVLRIMQQLAEEGKTMVVVTH 211
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1247 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 8e-12 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-26 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-10 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-26 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-16 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-25 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-18 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-11 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-10 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-15 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 7e-23 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-13 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-22 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-12 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-12 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 8e-22 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 6e-15 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-11 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-20 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-10 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-19 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-15 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 5e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 9e-11 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-12 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 9e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-08 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 5e-17 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 7e-10 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-14 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-11 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-12 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-04 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-05 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.002 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.003 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 0.003 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 109 bits (275), Expect = 1e-27
Identities = 49/198 (24%), Positives = 93/198 (46%), Gaps = 10/198 (5%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPK 756
E+ + L V+ + G ++MG SG+GK+T+++++ + T G + NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 757 KQETFTRIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL 814
+ T R G+ Q P +T E++ + + E ++ E +++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 815 NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
+ P + LS Q++R+ IA L NP II D+PT LD++ +M+ ++
Sbjct: 135 --EERFANHKPNQ--LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 875 TVD-TGRTVVCTIHQPSI 891
+ G+TVV H ++
Sbjct: 191 LNEEDGKTVVVVTHDINV 208
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 64.1 bits (156), Expect = 8e-12
Identities = 38/233 (16%), Positives = 81/233 (34%), Gaps = 47/233 (20%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA-------AYISQHD 56
++GP SGK+T+L + LD G V + ++ ++ Q
Sbjct: 36 IMGPSGSGKSTMLNIIGC-LDKP--TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92
Query: 57 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116
I +T E + + G ++ E+ + A E +
Sbjct: 93 NLIPLLTALENVELPLIFKYRG-------AMSGEER--------------RKRALECLKM 131
Query: 117 NVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 176
L + + + +SGGQ++RV + + D+ + LD
Sbjct: 132 AELEERFA--------------NHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 177 SSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGP 229
S T +I+ +++ ++ +G V+ ++ + II L D ++ +
Sbjct: 178 SKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 106 bits (267), Expect = 2e-26
Identities = 43/184 (23%), Positives = 71/184 (38%), Gaps = 10/184 (5%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
+ G+ G + L+G +GAGKTT + +AG R G I N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
+ P +TVYE+L+ A+ R E ++ L + L G
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKE---GIKRDLEWIFSLFPRLKERLKQLGG 138
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
LS +++ L I L++ P ++ MDEP+ GL + V ++ G T++
Sbjct: 139 -----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 884 CTIH 887
Sbjct: 194 LVEQ 197
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 60.3 bits (146), Expect = 2e-10
Identities = 46/233 (19%), Positives = 79/233 (33%), Gaps = 42/233 (18%)
Query: 4 LLGPPCSGKTTLLLALAGKLD-SKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEM 62
L+G +GKTT L A+AG + K K + + + A + + E+
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
TV E L A + + R +
Sbjct: 97 TVYENLMMGAYNRKDKE------GIKRDLEWI---------------------------- 122
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 182
+ L+ L G +SGG+++ + G ++ L MDE S GL +
Sbjct: 123 FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 177
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
+ I++ GT ++ + Q A + +L QIV +G +LD
Sbjct: 178 VFEVIQK--INQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 106 bits (267), Expect = 3e-26
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 11/191 (5%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFI-------EEIMELVELNP 816
Q +TV E+LL ++S K +I E+ +++E
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
L GE LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 197
Query: 877 DTGRTVVCTIH 887
G T + H
Sbjct: 198 AKGITFLIIEH 208
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 78.5 bits (193), Expect = 2e-16
Identities = 49/236 (20%), Positives = 82/236 (34%), Gaps = 35/236 (14%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP----QRTAAYISQHDVHI 59
++GP SGK+TL+ + G L + GRV + + P Q +
Sbjct: 35 IIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 91
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVL 119
EMTV E L C G + + ++E M A +
Sbjct: 92 KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE-----------MVEKAFK------- 133
Query: 120 TDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 179
L+ L L D G+ +SGGQ K V G ++ + MDE G+
Sbjct: 134 ---ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 185
Query: 180 TFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
I N + + G + + + D + ++ + QI+ +G E +
Sbjct: 186 AHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 102 bits (257), Expect = 5e-25
Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 16/189 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ-ETFT 762
+N ++ + G L+G SG GKTT + ++AG T G I
Sbjct: 22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTYLPPKD 77
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
R Q+ P +TVYE++ + ++ + + + EL+++ L
Sbjct: 78 RNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP 134
Query: 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 881
+ LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ T
Sbjct: 135 -----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 189
Query: 882 VVCTIHQPS 890
+ H
Sbjct: 190 TIYVTHDQV 198
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 84.1 bits (208), Expect = 1e-18
Identities = 53/253 (20%), Positives = 92/253 (36%), Gaps = 54/253 (21%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ-RTAAYISQHDVHIGEM 62
LLGP GKTT L +AG + GR+ + + P+ R + + Q M
Sbjct: 37 LLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM 93
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
TV E +AF + + E+ +R + A
Sbjct: 94 TVYENIAFPLKIKKFPKD-----EIDKRVRWA---------------------------- 120
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 182
++L +E + + +SGGQ++RV +V L MDE + LD+
Sbjct: 121 -AELLQIEE-----LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 174
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVLDFFESMG 241
+ I++ + I + E + D I +++ Q++ G P E+
Sbjct: 175 MRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV--------- 224
Query: 242 FKCPERKGVADFL 254
+ P VA F+
Sbjct: 225 YLRPNSVFVATFI 237
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 100 bits (251), Expect = 1e-24
Identities = 38/187 (20%), Positives = 77/187 (41%), Gaps = 16/187 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L ++ G + G +G GKTTL+ ++ + G I +G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKI 72
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825
+ + I ++V + L A L +E I + +E VE+ L++ L
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE-----IMDALESVEVLDLKKKL---- 123
Query: 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 884
LS +R+ +A L+ N I +D+P +D + V++++ + + G ++
Sbjct: 124 --GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 885 TIHQPSI 891
+ + S
Sbjct: 182 SREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 61.5 bits (149), Expect = 4e-11
Identities = 32/201 (15%), Positives = 65/201 (32%), Gaps = 48/201 (23%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
+ GP GKTTLL ++ L G + YNG + ++ + +
Sbjct: 29 VVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGV--PITKVKGKIFFLPEEIIVPR 83
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
+++V + L A GV + + +
Sbjct: 84 KISVEDYLKAVASLYGVKVNKNEIMDA--------------------------------- 110
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
L+ + + + +S G +RV ++ A +D+ +D +
Sbjct: 111 ---LESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 181 FQIVNSIRQNIHILNGTAVIS 201
+++ SI + I G +IS
Sbjct: 162 HKVLKSILE-ILKEKGIVIIS 181
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 101 bits (253), Expect = 3e-24
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 20/196 (10%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L GVS R G + +++G SG+GK+T + + + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 763 RIS-----------GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMEL 811
Q+ +TV E+++ A +++ + ++ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARER-ALKYLAK 135
Query: 812 VELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
V ++ Q P LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGK--YPVH--LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 872 VRNTVDTGRTVVCTIH 887
++ + G+T+V H
Sbjct: 192 MQQLAEEGKTMVVVTH 207
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 60.6 bits (147), Expect = 2e-10
Identities = 43/268 (16%), Positives = 82/268 (30%), Gaps = 66/268 (24%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ----------------R 47
++G SGK+T L + G + NG ++ +
Sbjct: 33 IIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 89
Query: 48 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMK 107
+ QH MTV E + + S+ + R +
Sbjct: 90 RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK----HDARERALKY------------- 132
Query: 108 AAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALF 167
L +G+ D + +SGGQ++RV+ + L
Sbjct: 133 ----------------LAKVGI----DERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL 172
Query: 168 MDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQ 227
DE ++ LD +++ ++Q G ++ + + +I L +I +
Sbjct: 173 FDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 230
Query: 228 GPRELVLDFFESMGFKCPERKGVADFLQ 255
G E V F P+ + FL+
Sbjct: 231 GDPEQV--------FGNPQSPRLQQFLK 250
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 98.8 bits (246), Expect = 3e-23
Identities = 36/187 (19%), Positives = 71/187 (37%), Gaps = 21/187 (11%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L ++ G + A+ G +G+GKT+L+ ++ G G I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 766 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP 825
+C Q P T+ E++++ D K ++ ++ + +
Sbjct: 100 SFCSQFSWIMPG-TIKENIIF------GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVL 152
Query: 826 GE--SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
GE LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 153 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 212
Query: 884 CTIHQPS 890
+
Sbjct: 213 LVTSKME 219
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.0 bits (184), Expect = 5e-15
Identities = 48/268 (17%), Positives = 84/268 (31%), Gaps = 60/268 (22%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60
M + G SGKT+LL+ + G+L++ G + ++G F Q I
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--VSFCSQ---------FSWIM 109
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
T++E + F K ++
Sbjct: 110 PGTIKENIIFGVSYDEY--------RYKSVVKACQLQ----------------------- 138
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
+ D+T++G+ V +SGGQ+ R++ + A +D LD T
Sbjct: 139 ---QDITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE 194
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PREL------- 232
Q+ S + N T ++ + E D I++L + G EL
Sbjct: 195 EQVFESCVCKLM-ANKTRILVTSK--MEHLRKADKILILHQGSSYFYGTFSELQSLRPDF 251
Query: 233 VLDFFESMGFKCPERKGVADFLQEVTSR 260
F + + L E R
Sbjct: 252 SSKLMGYDTFDQFTEERRSSILTETLRR 279
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 96.6 bits (240), Expect = 7e-23
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 12/184 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTR 763
L G+S G + L+G +GAGKTT + +++ + + G +T + ++ +
Sbjct: 18 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEPHEVRK 75
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
+ Y + + E L + A S + +E E+ L + V
Sbjct: 76 LISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRV- 131
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
S S ++L IA L+ NP + +DEPTSGLD A V + ++ G T++
Sbjct: 132 ----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 187
Query: 884 CTIH 887
+ H
Sbjct: 188 VSSH 191
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 68.5 bits (167), Expect = 3e-13
Identities = 47/258 (18%), Positives = 85/258 (32%), Gaps = 56/258 (21%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ--RTAAYISQHDVHIGE 61
L+GP +GKTT L ++ + SG VT G + E + + +Y+ +
Sbjct: 33 LIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 89
Query: 62 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTD 121
M E L F A S E + +
Sbjct: 90 MQGIEYLRFVAGFYASSSS----------------------------------EIEEMVE 115
Query: 122 YYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 181
++ GL + V S G +++ ++ +DE ++GLD
Sbjct: 116 RATEIAGLGE-----KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAR 170
Query: 182 QIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVLDFFESM 240
++ ++Q T ++S E L D I L+ + IV G EL
Sbjct: 171 EVRKILKQ-ASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEEL-------- 220
Query: 241 GFKCPERKGVADFLQEVT 258
+ + + + + +EV
Sbjct: 221 -KERYKAQNIEEVFEEVV 237
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 96.5 bits (240), Expect = 1e-22
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 13/191 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQET-F 761
LN VS G + ++G SGAGK+TL+ + R T G + ++ + + T
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R G Q+ TV+ ++ L P+ + + + + E++ LV L S
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELLSLVGLGDKHDSY 137
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 880
P LS Q++R+ IA L +NP ++ DE TS LD ++ +++ G
Sbjct: 138 ---PSN--LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 881 TVVCTIHQPSI 891
T++ H+ +
Sbjct: 193 TILLITHEMDV 203
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 66.1 bits (161), Expect = 2e-12
Identities = 43/238 (18%), Positives = 76/238 (31%), Gaps = 49/238 (20%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA------AYISQHDV 57
++G +GK+TL+ + G V +G + I QH
Sbjct: 36 VIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ TV +A E+ RR E
Sbjct: 93 LLSSRTVFGNVALPLELDNTPKD-----EVKRRVTEL----------------------- 124
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
L ++GL D +SGGQK+RV + L DE ++ LD
Sbjct: 125 ------LSLVGLG-----DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 178 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
+TT I+ ++ L T ++ + + D + ++S+ +++ Q V
Sbjct: 174 ATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 94.5 bits (235), Expect = 6e-22
Identities = 43/219 (19%), Positives = 82/219 (37%), Gaps = 24/219 (10%)
Query: 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 737
L F VT++ ++ L ++ G AL+G SG+GK+T+ ++
Sbjct: 14 LEFRNVTFTYP-----------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 62
Query: 738 GRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 794
G+I + G+ ++ + QN
Sbjct: 63 RFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120
Query: 795 EVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG--LSTEQRKRLTIAVELVANPSIIF 852
+++ + + M+ + L + GE+G LS QR+R+ IA L+ + I+
Sbjct: 121 QIEEAAR---MAYAMDFINKMD--NGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI 175
Query: 853 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
+DE TS LD + + + + RT + H+ S
Sbjct: 176 LDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRLST 213
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 66.0 bits (161), Expect = 3e-12
Identities = 46/236 (19%), Positives = 93/236 (39%), Gaps = 42/236 (17%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ--RTAAYISQHDVH 58
L+G SGK+T+ + D G + +GH + E+ R + +VH
Sbjct: 43 TVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVH 99
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
+ TV +A Y E +R + E + A A +
Sbjct: 100 LFNDTVANNIA-----------YARTEEYSREQIEEAAR---------MAYAMD------ 133
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
+ ++ DT++G E +SGGQ++R+ ++ + L +DE ++ LD+
Sbjct: 134 ------FINKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 186
Query: 179 TTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234
+ I ++ + + + ++ T + D+I+++ D IV +G +L
Sbjct: 187 SERAIQAALDE---LQKNRTSL-VIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 238
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 94.1 bits (234), Expect = 8e-22
Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 31/228 (13%)
Query: 671 LPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKT 730
+ + + D V++ + +++ +L ++ + G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 731 TLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCE--QNDIHSPFVTVYESLLYSA 788
TL++++ +G I I G+ K + Q D TV E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG- 115
Query: 789 WLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG----LPGESG--LSTEQRKRLTIAV 842
P D E + E ++ + +L GE G LS Q++RL+IA
Sbjct: 116 ---RPTATDEE-----VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167
Query: 843 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890
+ NP I+ +DE TS LD + +I+ + + RT + H+ S
Sbjct: 168 IFLNNPPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS 214
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 74.1 bits (182), Expect = 6e-15
Identities = 45/237 (18%), Positives = 83/237 (35%), Gaps = 43/237 (18%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYIS--QHDVH 58
+G GK+TL+ + D SG++ +GH + +F+ I Q D
Sbjct: 46 TVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNI 102
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
+ TV+E + G E+ K A
Sbjct: 103 LFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF------------------- 136
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
++ L DT VG E +SGGQK+R++ + + L +DE ++ LD
Sbjct: 137 -------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 179 TTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
+ I ++ + + ++ T D I+++ + IV G ++
Sbjct: 189 SESIIQEALDV---LSKDRTTL-IVAHRLSTITHADKIVVIENGHIVETGTHRELIA 241
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 91.1 bits (226), Expect = 6e-21
Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 21/216 (9%)
Query: 679 TFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 738
TF + + D ++L+ ++ + + G + ++G SG+GK+TL ++
Sbjct: 3 TFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 51
Query: 739 RKTGGYITGNITISGYP---KKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE 795
+ I G+ R G Q D ++ +++ +
Sbjct: 52 FYIPENGQ--VLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNI---SLANPGMS 105
Query: 796 VDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 855
V+ + + + + + +GLS QR+R+ IA LV NP I+ DE
Sbjct: 106 VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 165
Query: 856 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
TS LD + ++MR + + GRTV+ H+ S
Sbjct: 166 ATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRLST 200
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 62.6 bits (152), Expect = 3e-11
Identities = 46/238 (19%), Positives = 90/238 (37%), Gaps = 45/238 (18%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGH---GMDEFVPQRTAAYISQHDV 57
+ ++G SGK+TL + + +G+V +GH D +R + Q D
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQ-DN 86
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ ++ + ++ + + ++ K AG
Sbjct: 87 VLLNRSIIDNISL-------ANPGMSVEKVIYAAKLAGAH-------------------- 119
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
+ L +T+VG++ +SGGQ++R+ +V L DE ++ LD
Sbjct: 120 ------DFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDY 172
Query: 178 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
+ I+ ++ + I G VI + T D II++ +IV QG + +L
Sbjct: 173 ESEHVIMRNMHK---ICKGRTVIIIAH-RLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 89.6 bits (222), Expect = 2e-20
Identities = 39/195 (20%), Positives = 79/195 (40%), Gaps = 26/195 (13%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L +SG R G + L+G +GAGK+TL+ +AG +G G+I +G P + + T+++
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 766 ---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
Y Q V+ L + T+ + ++ + L+
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST 123
Query: 823 GLPGESGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 876 VDTGRTVVCTIHQPS 890
G +V + H +
Sbjct: 179 CQQGLAIVMSSHDLN 193
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 59.2 bits (143), Expect = 4e-10
Identities = 45/242 (18%), Positives = 73/242 (30%), Gaps = 60/242 (24%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA---AYISQHDVHIG 60
L+GP +GK+TLL +AG G + + G ++ + + A AY+SQ
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF 85
Query: 61 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLT 120
V L + L
Sbjct: 86 ATPVWHYLTLHQH---------------------------------------DKTRTELL 106
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALA-------LFMDEIST 173
+ L L DD L +SGG+ +RV +++ L +DE
Sbjct: 107 NDVAGALAL---DDKL--GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMN 161
Query: 174 GLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233
LD + + + G A++ T LL +++ G RE V
Sbjct: 162 SLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219
Query: 234 LD 235
L
Sbjct: 220 LT 221
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.3 bits (216), Expect = 1e-19
Identities = 48/229 (20%), Positives = 94/229 (41%), Gaps = 20/229 (8%)
Query: 668 GMVLPFEPH-SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSG 726
G++ P + F +V+++ ++ + L G++ RPG +TAL+G +G
Sbjct: 1 GLLTPLHLEGLVQFQDVSFAYPNRPDVLV----------LQGLTFTLRPGEVTALVGPNG 50
Query: 727 AGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYES 783
+GK+T+ +L + TGG + + Y + R Q ++ E+
Sbjct: 51 SGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY--LHRQVAAVGQEPQVFGR-SLQEN 107
Query: 784 LLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVE 843
+ Y L P ++ T + P S LS QR+ + +A
Sbjct: 108 IAY--GLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165
Query: 844 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSI 891
L+ P ++ +D+ TS LDA + V + + + + R+V+ S+
Sbjct: 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSL 214
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.6 bits (183), Expect = 3e-15
Identities = 42/238 (17%), Positives = 91/238 (38%), Gaps = 42/238 (17%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDV 57
+T L+GP SGK+T+ L G++ +G + ++ + R A + Q +
Sbjct: 42 VTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQ-EP 97
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+ +++E +A+ G+ P ++ AA G
Sbjct: 98 QVFGRSLQENIAY------------------------GLTQKPTMEEITAAAVKSGAH-- 131
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
+ GL DT V E +SGGQ++ V ++ L +D+ ++ LD+
Sbjct: 132 ------SFISGLPQGYDTEVD-EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 184
Query: 178 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
++ Q+ + ++ + + ++ + D I+ L I G + +++
Sbjct: 185 NSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFLEGGAIREGGTHQQLME 240
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 85.4 bits (211), Expect = 5e-19
Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 12/188 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
++ G +G SG GK+TL+ ++AG +T + I
Sbjct: 16 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTPPAERG 73
Query: 766 -GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL 824
G Q+ P ++V E++ + L + E + ++ E+++L L
Sbjct: 74 VGMVFQSYALYPHLSVAENMSFGLKLAGAKK---EVINQRVNQVAEVLQLAHLLDRKP-- 128
Query: 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 883
LS QR+R+ I LVA PS+ +DEP S LDA + + GRT++
Sbjct: 129 ---KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 185
Query: 884 CTIHQPSI 891
H
Sbjct: 186 YVTHDQVE 193
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 61.1 bits (148), Expect = 9e-11
Identities = 52/253 (20%), Positives = 88/253 (34%), Gaps = 54/253 (21%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA-AYISQHDVHIGEM 62
+GP GK+TLL +AG SG + M++ P + Q +
Sbjct: 31 FVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 87
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
+V E ++F + G + +R +
Sbjct: 88 SVAENMSFGLKLAGAKKE-----VINQRVNQV---------------------------- 114
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 182
+VL L + D + +SGGQ++RV G +V +DE + LD++ Q
Sbjct: 115 -AEVLQLAH-----LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 168
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVLDFFESMG 241
+ I + L T + E L D I++L ++ G P EL
Sbjct: 169 MRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLEL--------- 218
Query: 242 FKCPERKGVADFL 254
+ P + VA F+
Sbjct: 219 YHYPADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 84.5 bits (209), Expect = 1e-18
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 13/190 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
L +S +P + A G SG GK+T+ +L + T G IT I + +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN--WR 75
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
G+ Q+ T+ E+L Y L + E ++ + + L
Sbjct: 76 SQIGFVSQDSAIMAG-TIRENLTY----GLEGDYTDEDLWQVLDLAFARSFVENMPDQLN 130
Query: 823 GLPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
GE G +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + + GR
Sbjct: 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-LMKGR 189
Query: 881 TVVCTIHQPS 890
T + H+ S
Sbjct: 190 TTLVIAHRLS 199
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 64.9 bits (158), Expect = 5e-12
Identities = 47/236 (19%), Positives = 76/236 (32%), Gaps = 43/236 (18%)
Query: 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYIS--QHDVH 58
+ GP GK+T+ L +G +T +G +D + + I D
Sbjct: 30 IIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSA 86
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANV 118
I T+RE L + + +LA PD
Sbjct: 87 IMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPD------------------- 127
Query: 119 LTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 178
+T VG E ISGGQ++R+ + L +DE + LDS
Sbjct: 128 -------------QLNTEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173
Query: 179 TTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELV 233
+ + ++ ++ G + + T D I + QI G ELV
Sbjct: 174 SESMVQKALDS---LMKGRTTLVIAH-RLSTIVDADKIYFIEKGQITGSGKHNELV 225
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 81.9 bits (202), Expect = 9e-18
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 14/191 (7%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQE---T 760
+ +S + G L+G SG GKTT + ++AG + G I + P+K
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 761 FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQS 820
R Q+ P +TVY+++ + LR +V + + E+ EL+ L L
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR 135
Query: 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 879
P E LS QR+R+ + +V P + MDEP S LDA+ + ++ G
Sbjct: 136 ---KPRE--LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 880 RTVVCTIHQPS 890
T + H
Sbjct: 191 VTTIYVTHDQV 201
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 55.3 bits (133), Expect = 1e-08
Identities = 46/251 (18%), Positives = 84/251 (33%), Gaps = 44/251 (17%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMT 63
LLGP GKTT L +AG + G++ + ++ D I +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVA---DPEKGIFVPPKDRDIAMVF 87
Query: 64 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYY 123
L + L ++ R+E + +
Sbjct: 88 QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV------------------------REV 123
Query: 124 LKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 183
++LGL + + R +SGGQ++RV G +V MDE + LD+ ++
Sbjct: 124 AELLGLTE-----LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 184 VNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESMGFK 243
+++ L T + E + D I +++ + G + V +
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEV--------YD 229
Query: 244 CPERKGVADFL 254
P VA F+
Sbjct: 230 KPANTFVAGFI 240
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 79.7 bits (196), Expect = 5e-17
Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 13/190 (6%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQET--F 761
L+ V+ G ++G SGAGKTT M ++AG + G + + + K
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
R G Q P +T +E++ + P +++ + + E+ ++ + L
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAF------PLTNMKMSKEEIRKRVEEVAKILDIHHVL 134
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 880
P E LS Q++R+ +A LV +PS++ +DEP S LDAR V+ G
Sbjct: 135 NHFPRE--LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192
Query: 881 TVVCTIHQPS 890
T++ H P+
Sbjct: 193 TLLVVSHDPA 202
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 58.6 bits (141), Expect = 7e-10
Identities = 45/258 (17%), Positives = 86/258 (33%), Gaps = 59/258 (22%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ------RTAAYISQHDV 57
+LGP +GKTT + +AG +G + ++ + R + Q
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEAN 117
+T E +AF + + +R +E
Sbjct: 93 LYPNLTAFENIAFPLTNMKMSKEE-----IRKRVEEV----------------------- 124
Query: 118 VLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 177
++ D V + R +SG Q++RV +V L +DE + LD+
Sbjct: 125 -----------AKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173
Query: 178 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVLDF 236
+++ L T ++ PA + + + D + +L ++V G P +L
Sbjct: 174 RMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDL---- 228
Query: 237 FESMGFKCPERKGVADFL 254
+ P VA +
Sbjct: 229 -----YDNPVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 72.0 bits (176), Expect = 2e-14
Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 15/188 (7%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YPKKQETFTRI 764
L+ +S G ++G +GAGKT ++++AG I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 765 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL 824
+ QN P + V ++L + ++ + + +++ + L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK---------KIKDPKRVLDTARDLKIEHLLDRN 124
Query: 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 883
P LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 PLT--LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 884 CTIHQPSI 891
H +
Sbjct: 183 HITHDQTE 190
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 61.2 bits (148), Expect = 7e-11
Identities = 52/253 (20%), Positives = 93/253 (36%), Gaps = 57/253 (22%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQR-TAAYISQHDVHIGEM 62
+LGP +GKT L +AG SGR+ +G + + P++ A++ Q+ M
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM 87
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
V++ L F R + + +R +
Sbjct: 88 NVKKNLEFGMRMKKIKDP--------KRVLDT---------------------------- 111
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 182
+ L +E D +SGG+++RV +V L +DE + LD T +
Sbjct: 112 -ARDLKIEHL-----LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP-RTQE 164
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG-PRELVLDFFESMG 241
+ +H N V+ + E + D I ++ D +++ G P E+
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI--------- 215
Query: 242 FKCPERKGVADFL 254
F+ P VA F+
Sbjct: 216 FEKPVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 65.0 bits (158), Expect = 6e-12
Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 18/180 (10%)
Query: 715 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFTRISGYCEQN 771
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 772 DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831
P ++VY ++ Y V+ + + E+ E + + L + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLS 128
Query: 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 890
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 59.6 bits (144), Expect = 3e-10
Identities = 45/252 (17%), Positives = 84/252 (33%), Gaps = 55/252 (21%)
Query: 4 LLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTA-AYISQHDVHIGEM 62
LLGP +GK+ L +AG + G V NG + P+R ++ Q +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 63 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDY 122
+V +A+ R R + E+
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREM----------------------------------- 110
Query: 123 YLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 182
E + D +SGG+++RV +V L +DE + +D T
Sbjct: 111 ------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 183 IVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESMGF 242
++ +R + + E L D++ ++ + +IV +G + +
Sbjct: 165 LMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS------- 216
Query: 243 KCPERKGVADFL 254
+ VA+FL
Sbjct: 217 --AKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 44.6 bits (104), Expect = 1e-05
Identities = 18/178 (10%), Positives = 37/178 (20%), Gaps = 39/178 (21%)
Query: 720 ALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSP 776
+ G G GKTTL+ + ++ G+ T + K+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 777 FVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836
+ + + + + ++
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPIL 88
Query: 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 894
+I +DE + D VV TI +
Sbjct: 89 ERAYREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL 145
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 40.0 bits (92), Expect = 7e-04
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 3/82 (3%)
Query: 3 LLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEM 62
++ G P GKTTL+ + +L + + E + I+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 63 TVRETLAFSARCQGVGSRYDML 84
+ T GV +Y
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEE 82
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 38.0 bits (87), Expect = 0.002
Identities = 14/133 (10%), Positives = 34/133 (25%), Gaps = 6/133 (4%)
Query: 6 GPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVR 65
+GKTTLL L L ++ R H + + + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALCAR---GIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 66 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLK 125
+ A ++ + + ++ + + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 126 VLGLEVCDDTLVG 138
L D ++
Sbjct: 126 ELV---IDRHVIA 135
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 0.003
Identities = 15/133 (11%), Positives = 35/133 (26%), Gaps = 17/133 (12%)
Query: 770 QNDIHSPFVTVYESLL-----------YSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ + +Y L +A L + E + + L +
Sbjct: 272 FDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDME 331
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
G + L+ L A+ +DE + LD + +R +
Sbjct: 332 YLSGGEKTVAALA------LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP 385
Query: 879 GRTVVCTIHQPSI 891
+ + ++
Sbjct: 386 DLQFIVISLKNTM 398
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.1 bits (87), Expect = 0.003
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 2/94 (2%)
Query: 720 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVT 779
+ G +GKT+L+ +L + +S T + + ++
Sbjct: 7 IIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVD--FPGHVKLRYKLS 64
Query: 780 VYESLLYSAWLRLPPEVDSETQKMFIEEIMELVE 813
Y L VDS + E +
Sbjct: 65 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLV 98
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1247 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.77 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.68 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.39 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.31 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.01 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.01 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.94 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.89 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.74 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.62 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.53 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.85 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.71 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.7 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.65 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.47 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.38 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.25 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.14 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.91 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.9 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.89 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.84 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.81 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.76 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.74 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.68 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.67 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.64 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.61 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.6 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.6 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.51 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.51 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.48 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.43 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.4 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.39 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.34 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.32 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.3 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.3 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.29 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.27 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.25 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.25 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.24 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.22 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.22 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.22 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.22 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.21 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.19 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.19 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.18 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.17 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.17 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.17 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.16 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.13 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.13 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.12 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.12 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.05 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.04 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.04 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.01 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.0 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.99 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.97 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.97 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.96 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.96 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.96 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.96 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.95 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.94 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.94 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.94 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.94 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.94 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.93 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.92 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.91 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.9 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.9 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.88 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.87 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.86 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.85 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.82 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.81 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.8 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.78 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.78 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.77 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.77 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.77 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.72 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.7 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.69 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.69 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.68 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.68 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.65 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.64 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.63 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.63 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.62 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.6 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.59 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.59 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.57 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.56 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.56 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.54 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.53 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.52 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.49 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.48 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.46 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.45 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.44 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.43 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.41 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.4 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.39 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.35 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.33 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.33 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.32 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.31 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.3 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.29 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.29 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.28 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.28 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.27 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.25 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.25 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.24 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.23 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.22 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.2 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.19 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.17 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.17 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.17 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.15 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.14 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.14 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.13 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.12 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.12 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.1 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.08 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.08 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.07 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.07 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.06 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.04 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.04 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.02 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.98 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.98 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.97 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.95 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.94 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.94 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.92 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.9 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.85 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.85 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.85 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.83 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.79 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.77 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.73 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.72 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.71 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.67 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.66 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.66 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.65 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.64 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.64 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.61 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.6 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.59 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.56 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.55 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.54 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.53 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.5 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.41 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.36 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.35 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.33 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.32 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.32 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.31 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.29 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.28 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.28 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.25 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.24 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.22 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 94.19 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.19 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.18 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.14 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.12 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.08 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.07 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.05 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.05 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.04 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.02 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.01 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.97 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.92 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.88 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.87 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.84 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.82 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.81 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.81 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.8 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.77 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.76 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.74 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.73 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.69 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.69 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.65 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.63 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.63 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.62 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.61 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.6 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.6 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.57 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.52 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.52 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.48 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.41 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.39 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.39 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.38 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.37 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.36 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.34 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.32 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.28 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.26 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.26 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.22 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.22 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.22 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 93.21 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.21 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.2 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.19 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.19 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.15 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.13 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.13 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.13 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.12 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.11 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.09 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.08 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.06 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.06 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.04 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.01 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.97 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.97 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.96 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.93 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.92 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 92.9 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.88 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.88 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.88 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.87 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.84 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.83 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.82 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.81 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.81 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.81 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.79 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.79 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.78 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.78 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.75 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.74 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.73 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.72 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.71 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.7 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.69 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.68 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.68 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.67 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.65 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.6 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.55 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.54 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.53 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.53 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.52 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.51 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.51 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.48 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.43 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.42 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.42 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.41 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.39 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.35 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.35 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.34 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.34 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.33 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.32 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.31 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 92.31 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.3 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.27 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.26 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 92.25 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.22 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.22 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.14 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.13 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.1 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.1 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.07 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.03 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.01 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.98 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.94 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.94 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.88 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.85 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.82 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.82 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.77 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.73 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.66 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.6 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.59 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.55 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.54 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 91.54 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 91.5 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.44 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.43 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.35 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.35 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.33 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 91.32 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.31 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.29 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.26 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 91.18 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 91.18 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.11 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.06 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.06 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 91.04 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.02 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.99 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.96 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.89 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.83 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.82 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.82 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.82 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 90.73 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.73 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 90.69 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.67 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.57 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.51 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.49 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.47 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.44 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 90.28 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.2 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.1 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.1 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.1 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 90.06 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 89.93 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.9 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.8 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 89.71 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.66 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.51 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.24 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.19 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 88.96 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 88.66 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.55 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.4 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 88.23 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.2 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.92 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 87.88 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.67 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 87.63 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.23 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.23 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 87.16 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 87.1 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.71 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.71 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 86.59 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 86.57 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 86.41 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.31 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.69 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 85.54 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 85.05 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 84.95 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 84.63 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 84.37 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 84.3 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 84.26 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.06 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 83.97 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 83.63 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 82.95 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 82.94 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 82.12 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 81.31 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.28 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 80.92 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.84 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=308.77 Aligned_cols=198 Identities=25% Similarity=0.354 Sum_probs=166.8
Q ss_pred EEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99996999991670122104555642101141789957729999959999789999988689999728999999481178
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1247)
++++|+++++. .+.+|+|+|+.+++||.++|+||||||||||+++++|...+ .+|+|.+||.++.
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p--~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEECC
T ss_conf 99999999989-------------99998111778869989999989998299999999658788--8888999999778
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 4-333433899626898899817999999976606999999999999999999981997543343468888888988879
Q 000867 758 Q-ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1247)
Q Consensus 758 ~-~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrk 836 (1247)
. ...+|.+|||+|++.+++.+||+|++.|...++. .+.++.+++++++++.++|.+..|..+. .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHH
T ss_conf 886444322234334202643337889789998759---9889999999999975788656648965-----69999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHC
Q ss_conf 99999998519958899599999999999999999999873-8988999941699689984104
Q 000867 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 837 r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
|++|||+|+.+|++|+|||||+|||+.+...+++.++++.+ .|.|+|+++|++. ++..+-|+
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dr 200 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADK 200 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 9999999703998899758887889889989999999998742987999948999-99996999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.4e-45 Score=305.87 Aligned_cols=199 Identities=22% Similarity=0.336 Sum_probs=175.3
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699999167012210455564210114178995772999995999978999998868999972899999948117
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1247)
.++++|++.++. .+.+|+|||+.+++||.++|+||||||||||+++|+|...+ .+|+|.+||.++
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p--~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 499987999999-------------99998130678879989999999998299999999758999--878799916413
Q ss_pred CC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 84-33343389962689889981799999997660699999999999999999998199754334346888888898887
Q 000867 757 KQ-ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 757 ~~-~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
.. ...+|.+|||+|+..+++.+||+|++.|.+.++ ..+.++.+++++++++.++|.+..|... ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHH
T ss_conf 547700015899800335342220999999999873---9999999999999998759855660995-----46999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHC
Q ss_conf 9999999985199588995999999999999999999998738-988999941699689984104
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 836 kr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
||++|||+|+.+|++|+|||||+|||+.+...+++.++++.++ |.|+|+++|++. ++..+-|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dr 206 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDR 206 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 89999766404998243068866689899989999999998731980799948999-99986999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.2e-45 Score=301.03 Aligned_cols=192 Identities=24% Similarity=0.332 Sum_probs=164.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 989837999996898969829989998223699988946898764-3127876554466888998999999976238987
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~-~~~i~yv~Q~d~l~~~LTVrEnL~f~a~l~~~~~ 79 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... ++.+|||+|++.+++++||+||+.|.+++++..
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~- 109 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP- 109 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCC-
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHCCCC-
T ss_conf 99999999982999999997589998---78799916413547700015899800335342220999999999873999-
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 63022584599885089999864688888542100133569999998099544565336875433662433124798887
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~al 159 (1247)
+++.+..++++++.++|++..|..+ ..||||||||++||||+
T Consensus 110 ---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRvaiAraL 151 (239)
T d1v43a3 110 ---------------------------------KDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAI 151 (239)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHH
T ss_conf ---------------------------------9999999999998759855660995-----46999998899997664
Q ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 3597086662798560379999999999999782398899995389825995201378856990787648102899
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 160 ~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~~~l~~ 235 (1247)
+.+|+|++|||||+|||+.++.++++.+++.....+.|+++ ++|...++..++|+|++|++|+++++|+++++.+
T Consensus 152 ~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~-vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 152 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 04998243068866689899989999999998731980799-9489999998699999998999999859999986
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.7e-44 Score=296.12 Aligned_cols=199 Identities=25% Similarity=0.336 Sum_probs=174.6
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699999167012210455564210114178995772999995999978999998868999972899999948117
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1247)
.++++|++.++. .+.+|+|+|+.+++||+++|+||||||||||+++|+|...+ .+|+|.+||.++
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p--~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred CEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEE
T ss_conf 189986999989-------------99998560668869989999999998099999999648788--989899999980
Q ss_pred CC-------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 84-------33343389962689889981799999997660699999999999999999998199754334346888888
Q 000867 757 KQ-------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG 829 (1247)
Q Consensus 757 ~~-------~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 829 (1247)
.. ...++.+|||+|++.++|.+||.|++.|...++ ..+.++.+++++++++.++|.+..+... +.
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HH
T ss_conf 356644424532255120022122231011667633068772---9998999999999998759966762993-----34
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHC
Q ss_conf 8988879999999985199588995999999999999999999998738-988999941699689984104
Q 000867 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 830 lSgGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
||||||||++|||+|+.+|++|++||||+|||+.+...+++.++++.++ |.|||+++|+.. ++..+-|+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~dr 209 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDR 209 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-99996999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.2e-44 Score=295.60 Aligned_cols=204 Identities=23% Similarity=0.368 Sum_probs=172.8
Q ss_pred EEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99996999991670122104555642101141789957729999959999789999988689999728999999481178
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1247)
++++|++.++... .....+|+|+|+.+++||.++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p--~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCC--CCCEEEECCEECC
T ss_conf 8999079994899---------8208987133778849979999889999821655750688777--7662699999857
Q ss_pred CC------C-CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 43------3-34338996268988998179999999766069999999999999999999819975-4334346888888
Q 000867 758 QE------T-FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESG 829 (1247)
Q Consensus 758 ~~------~-~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~ 829 (1247)
.. . +++.+|||+|+..++|.+||.|++.+....+.....+.+++.+.+.+.++.++|.+ ..+..+ ..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HH
T ss_conf 6885551231255577880412417686688877578887224789999999999998876242345534880-----23
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHC
Q ss_conf 8988879999999985199588995999999999999999999998738-988999941699689984104
Q 000867 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 830 lSgGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
||||||||++|||||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|+++|++. +....|+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~dr 214 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGER 214 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHH--HHHHCCE
T ss_conf 89999999998756522788899468765469899999999999999843999999878889--9986998
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=7e-45 Score=299.73 Aligned_cols=202 Identities=26% Similarity=0.380 Sum_probs=175.5
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699999167012210455564210114178995772999995999978999998868999972899999948117
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1247)
.++++|++++++. +...+|+|||+.+++||.++|+||||||||||+++|+|...+ .+|+|.+||.+.
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p--~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEEEEEEECC-----------CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEE
T ss_conf 8999757999889-----------998998040789879989999989998099999999758688--874599999995
Q ss_pred CC------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 84------333433899626898899817999999976606999999999999999999981997543343468888888
Q 000867 757 KQ------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGL 830 (1247)
Q Consensus 757 ~~------~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 830 (1247)
.. ...+|.+|||+|+..++|.+||+|++.|....+ ..+.++.+++++++++.+||.+..|...+ .|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----EL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCHH-----HC
T ss_conf 13731115312045147730433466665777766556761---37999999999999866591766648954-----59
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHCC
Q ss_conf 988879999999985199588995999999999999999999998738-9889999416996899841048
Q 000867 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEG 900 (1247)
Q Consensus 831 SgGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~Hqp~~~i~~~fD~~ 900 (1247)
|||||||++|||+|+.+|++|++||||+|||+.+...+++.++++.++ |.|+|+++|++. ++.++-|+.
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri 211 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRV 211 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-999969999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-45 Score=301.75 Aligned_cols=192 Identities=24% Similarity=0.336 Sum_probs=164.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 989837999996898969829989998223699988946898764-3127876554466888998999999976238987
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~-~~~i~yv~Q~d~l~~~LTVrEnL~f~a~l~~~~~ 79 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.+... +|.+|||+|++.+++.+||+||+.|+..+++..
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~- 103 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK- 103 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------------
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC-
T ss_conf 99999899982999999996587888---88899999977888644432223433420264333788978999875998-
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 63022584599885089999864688888542100133569999998099544565336875433662433124798887
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~al 159 (1247)
+++.+..++++++.++|++..+..+. .||||||||++||||+
T Consensus 104 ---------------------------------~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQRvaiAraL 145 (232)
T d2awna2 104 ---------------------------------KEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ----------------------------------CHHHHHHHHHHHHC--------------------------CHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHH
T ss_conf ---------------------------------89999999999975788656648965-----6999999999999997
Q ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 3597086662798560379999999999999782398899995389825995201378856990787648102899
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 160 ~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~~~l~~ 235 (1247)
+.+|++++|||||+|||+.++.+|++.+++..+..+.|+++ ++|...++..++|+|++|.+|+++++|+++++.+
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~-vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 03998899758887889889989999999998742987999-9489999999699999997999999808999973
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.8e-45 Score=301.91 Aligned_cols=192 Identities=25% Similarity=0.331 Sum_probs=162.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC-------CCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 98983799999689896982998999822369998894689876-------43127876554466888998999999976
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV-------PQRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~-------~~~~i~yv~Q~d~l~~~LTVrEnL~f~a~ 73 (1247)
+++|+||||||||||+++|+|...|+ +|+|.++|.++.... .++.+|||+|++.+++.+||+||+.|...
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~ 107 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHH
T ss_conf 99999999980999999996487889---898999999803566444245322551200221222310116676330687
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 23898763022584599885089999864688888542100133569999998099544565336875433662433124
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRV 153 (1247)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRl 153 (1247)
+++.. .++.+..++++++.++|++..+... +.||||||||+
T Consensus 108 ~~~~~----------------------------------~~e~~~~v~~~l~~~~l~~~~~~~p-----~~LSGGqkQRv 148 (240)
T d1g2912 108 LRKVP----------------------------------RQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRV 148 (240)
T ss_dssp HTTCC----------------------------------HHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHH
T ss_pred HCCCC----------------------------------HHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHH
T ss_conf 72999----------------------------------8999999999998759966762993-----34999999999
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHH
Q ss_conf 79888735970866627985603799999999999997823988999953898259952013788569907876481028
Q 000867 154 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELV 233 (1247)
Q Consensus 154 sIA~al~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~~~l 233 (1247)
+|||||+.+|++++|||||+|||+.++.+|++.+++..+..+.|+++ ++|..+++..++|+|++|.+|++++.|+++++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~-vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el 227 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY-VTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 99999826998898258876569899989999999998636988999-95999999996999999989999998599999
Q ss_pred HH
Q ss_conf 99
Q 000867 234 LD 235 (1247)
Q Consensus 234 ~~ 235 (1247)
..
T Consensus 228 ~~ 229 (240)
T d1g2912 228 YD 229 (240)
T ss_dssp HH
T ss_pred HH
T ss_conf 82
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=5.6e-45 Score=300.79 Aligned_cols=194 Identities=21% Similarity=0.278 Sum_probs=165.7
Q ss_pred EEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99996999991670122104555642101141789957729999959999789999988689999728999999481178
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1247)
++++|+++++. ..+|+|||+.+++||.++|+||||||||||+++|+|...+ .+|+|.+||.++.
T Consensus 2 i~v~nlsk~y~--------------~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p--~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK--------------NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS--------------SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC--------------CEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEECC
T ss_conf 89998999949--------------9788433789879989999989998299999999647688--8788999567346
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 4-333433899626898899817999999976606999999999999999999981997543343468888888988879
Q 000867 758 Q-ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1247)
Q Consensus 758 ~-~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrk 836 (1247)
. ...+|.+|||+|+..++|.+||+|++.|...++... . +++++++++.+++.+..|..++ .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~--~----~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK--D----PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC--C----HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHH
T ss_pred CCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC--H----HHHHHHHHHHHCCHHHHHCCHH-----HCCHHHHC
T ss_conf 52165740561512111174665778888877640553--8----9999999998256555758955-----47999840
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHC
Q ss_conf 99999998519958899599999999999999999999873-8988999941699689984104
Q 000867 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 837 r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
|++|||+|+.+|++|+|||||+|||+.+...+++.++++.+ .|.|+|+++|++. ++..+-|+
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~dr 197 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADR 197 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSE
T ss_pred CHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCE
T ss_conf 1403043443677144347876799899999999999998647968999749999-99996999
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.4e-45 Score=303.68 Aligned_cols=190 Identities=22% Similarity=0.334 Sum_probs=157.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 989837999996898969829989998223699988946898764-3127876554466888998999999976238987
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~-~~~i~yv~Q~d~l~~~LTVrEnL~f~a~l~~~~~ 79 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... ++.+|||+|++.+++++||+||+.|+.+ .
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~--~--- 97 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR--N--- 97 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCT--T---
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHHHC--C---
T ss_conf 99999799980999999997399989---628999999988699899285225231443522015576665323--3---
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 63022584599885089999864688888542100133569999998099544565336875433662433124798887
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~al 159 (1247)
+ .+. +.+..++++++.+||.+..+... ..|||||||||+||||+
T Consensus 98 -~------~~~------------------------~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral 141 (240)
T d2onka1 98 -V------ERV------------------------ERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARAL 141 (240)
T ss_dssp -S------CHH------------------------HHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHH
T ss_pred -C------CHH------------------------HHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHHHHH
T ss_conf -6------778------------------------89999999998638375665794-----44899998999998777
Q ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 3597086662798560379999999999999782398899995389825995201378856990787648102899
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 160 ~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~~~l~~ 235 (1247)
+.+|++++|||||||||+.++.++++.+++..+..+.|+++ ++|...++..++|+|++|++|+++++|+++++..
T Consensus 142 ~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~-vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH-VTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEEECHHHHHC
T ss_conf 51677067528655588799999999999998743976999-8189999999699999998999999906999832
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.9e-44 Score=295.14 Aligned_cols=202 Identities=23% Similarity=0.294 Sum_probs=172.9
Q ss_pred EEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99996999991670122104555642101141789957729999959999789999988689999728999999481178
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1247)
++++|++.++... .....+|+|||+.+++||.++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p--~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC--SEEEEEETTEEEC
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCC--CCCCEEECCEEEE
T ss_conf 7998279996999---------8148986150578869979999899989888999987588636--6773288676852
Q ss_pred C------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4------3334338996268988998179999999766069999999999999999999819975433434688888889
Q 000867 758 Q------ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLS 831 (1247)
Q Consensus 758 ~------~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 831 (1247)
. ..+++.+|||+|+..+++.+||.|++.|...++. .+.++.+++++++++.+||.+..|...+ .||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~~-----~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCBS-----CCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHHCCHH-----HCC
T ss_conf 08755511554166430225222799649999999999849---9989999999999997699035548943-----499
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHC
Q ss_conf 88879999999985199588995999999999999999999998738-988999941699689984104
Q 000867 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 832 gGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
||||||++|||+|+.+|++|++||||+|||+.++..+++.|+++.++ |.|||+++|+.. ++..+.|+
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dr 210 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDC 210 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-99986999
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-44 Score=297.76 Aligned_cols=191 Identities=21% Similarity=0.283 Sum_probs=162.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC------CCEEEEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 989837999996898969829989998223699988946898764------31278765544668889989999999762
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP------QRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~------~~~i~yv~Q~d~l~~~LTVrEnL~f~a~l 74 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... |+.+|||+|++-+++.+||+||+.|..++
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~ 109 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99998999898889999875886366---773288676852087555115541664302252227996499999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 38987630225845998850899998646888885421001335699999980995445653368754336624331247
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRls 154 (1247)
.+.. +++.+..++++++.+||++..+... ..|||||||||+
T Consensus 110 ~~~~----------------------------------~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LSGG~~QRva 150 (240)
T d3dhwc1 110 DNTP----------------------------------KDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVA 150 (240)
T ss_dssp TTCC----------------------------------TTHHHHHHHHHHHHHSTTTTTSSCB-----SCCCHHHHHHHH
T ss_pred CCCC----------------------------------HHHHHHHHHHHHHHCCCCHHHHCCH-----HHCCHHHHHHHH
T ss_conf 4999----------------------------------8999999999999769903554894-----349999998999
Q ss_pred HHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHH
Q ss_conf 98887359708666279856037999999999999978239889999538982599520137885699078764810289
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 155 IA~al~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~~~l~ 234 (1247)
||||++.+|+++++||||+|||+.++.+|++.+++..+..+.|+++ ++|...++..++|+|++|++|++++.|+++++.
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~-vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL-ITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEE-EBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 8640105898687446556589888567999999998646978999-838999999869999999799999987999997
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=7e-45 Score=300.12 Aligned_cols=192 Identities=20% Similarity=0.247 Sum_probs=161.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 9898379999968989698299899982236999889468987------6431278765544668889989999999762
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEF------VPQRTAAYISQHDVHIGEMTVRETLAFSARC 74 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~------~~~~~i~yv~Q~d~l~~~LTVrEnL~f~a~l 74 (1247)
+.+|+||||||||||+++|+|..+|+ +|+|.++|.++... ..++.+|||+|++.++|++||+|||.|..+.
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~ 109 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN 109 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999899980999999997586888---745999999951373111531204514773043346666577776655676
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 38987630225845998850899998646888885421001335699999980995445653368754336624331247
Q 000867 75 QGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154 (1247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRls 154 (1247)
.+.. +++.+..++++++.++|.+..+...+ .|||||||||+
T Consensus 110 ~~~~----------------------------------~~~~~~~v~~~l~~~gL~~~~~~~p~-----~LSGGqkQRva 150 (242)
T d1oxxk2 110 MKMS----------------------------------KEEIRKRVEEVAKILDIHHVLNHFPR-----ELSGAQQQRVA 150 (242)
T ss_dssp SSCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHH
T ss_pred HCCC----------------------------------HHHHHHHHHHHHHHCCHHHHHHCCHH-----HCCHHHHHHHH
T ss_conf 1379----------------------------------99999999999866591766648954-----59999985899
Q ss_pred HHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHH
Q ss_conf 98887359708666279856037999999999999978239889999538982599520137885699078764810289
Q 000867 155 TGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234 (1247)
Q Consensus 155 IA~al~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~~~l~ 234 (1247)
||||++.+|+++++||||+|||+.++.++++.+++..+..+.|+++ ++|...++..++|+|++|++|++++.|+++++.
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~-vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV-VSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 8757760466145447866799899889989999998635987999-979999999969999999899999986999998
Q ss_pred H
Q ss_conf 9
Q 000867 235 D 235 (1247)
Q Consensus 235 ~ 235 (1247)
.
T Consensus 230 ~ 230 (242)
T d1oxxk2 230 D 230 (242)
T ss_dssp H
T ss_pred H
T ss_conf 6
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=9.4e-44 Score=292.68 Aligned_cols=189 Identities=23% Similarity=0.308 Sum_probs=162.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 989837999996898969829989998223699988946898764-3127876554466888998999999976238987
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 79 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~-~~~i~yv~Q~d~l~~~LTVrEnL~f~a~l~~~~~ 79 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.+... ++.+|||+|++.+++.+||+||+.|+.++++..
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~- 103 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK- 103 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC-
T ss_conf 99999899982999999996476888---78899956734652165740561512111174665778888877640553-
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 63022584599885089999864688888542100133569999998099544565336875433662433124798887
Q 000867 80 RYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMM 159 (1247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~al 159 (1247)
.+..++++++.++|.+..|..+ ..|||||||||+||||+
T Consensus 104 ------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~QRvaiAraL 142 (229)
T d3d31a2 104 ------------------------------------DPKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARAL 142 (229)
T ss_dssp ------------------------------------CHHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHT
T ss_pred ------------------------------------HHHHHHHHHHHHCCHHHHHCCH-----HHCCHHHHCCHHHHHHH
T ss_conf ------------------------------------8999999999825655575895-----54799984014030434
Q ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 3597086662798560379999999999999782398899995389825995201378856990787648102899
Q 000867 160 VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 160 ~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~~~l~~ 235 (1247)
+.+|++++|||||||||+.++.++++.+++..+..+.|+ +.++|...++..++|+|++|.+|+++++|+++++.+
T Consensus 143 ~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~ti-i~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV-LHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEE-EEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEE-EEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 436771443478767998999999999999986479689-997499999999699999997999999869999986
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-42 Score=285.80 Aligned_cols=199 Identities=23% Similarity=0.311 Sum_probs=174.0
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699999167012210455564210114178995772999995999978999998868999972899999948117
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1247)
.+..+|++.++. ++.+|+|+|+.+++||.+||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 2 aI~v~nl~k~yg-------------~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p--~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred CEEEEEEEEEEC-------------CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 789995899999-------------99998062568848979999999999999999999669887--888799986724
Q ss_pred CC--CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 84--3334338996268988998179999999766069999999999999999999819975433434688888889888
Q 000867 757 KQ--ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834 (1247)
Q Consensus 757 ~~--~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 834 (1247)
.. ...++..+|+||+..+++.+|+.|++.|.+.++. .+..+.++.++.+++.++|.+..+..++ .+||||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~ 138 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGM 138 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHH
T ss_pred CCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHH
T ss_conf 46839887218675001546878667788898998617---9989999999999986797888850453-----379989
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 79999999985199588995999999999999999999998738988999941699689984104
Q 000867 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 835 rkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
|||++||++|+.+|++++|||||+|||+.+...+++.+++++++|.|||+++|+.. ++..+.|+
T Consensus 139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~dr 202 (238)
T d1vpla_ 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDR 202 (238)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSE
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 89999999986599988733798897989999999999999965998999959899-99996999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-43 Score=291.36 Aligned_cols=203 Identities=23% Similarity=0.324 Sum_probs=158.3
Q ss_pred CEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 08999969999916701221045556421011417899577299999599997899999886899997289999994811
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~ 755 (1247)
..++++|++|+|+.. ..+.+|+|+|+.+++||++||+||||||||||+++|.|...+ .+|+|.+||.+
T Consensus 10 g~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p--~~G~I~i~g~~ 77 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP--TGGQLLLDGKP 77 (251)
T ss_dssp CCEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CEEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEE
T ss_conf 369999989988999----------999767443899849989999999998499999998614378--76899889985
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 784---333433899626898899817999999976606999999999999-----999999981997543343468888
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKM-----FIEEIMELVELNPLRQSLVGLPGE 827 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~-----~v~~~l~~l~l~~~~~~~~g~~~~ 827 (1247)
+.. ..+++.++||+|+..+++ .|++|++.+... .......... ...+.++ ++.+-.++.++.. .
T Consensus 78 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~ 149 (251)
T d1jj7a_ 78 LPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-G 149 (251)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-C
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCC-C
T ss_conf 311013788877654045650027-634655454210----1302788999999998999998--5612111367516-7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHCC
Q ss_conf 888988879999999985199588995999999999999999999998738-9889999416996899841048
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEG 900 (1247)
Q Consensus 828 ~~lSgGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~Hqp~~~i~~~fD~~ 900 (1247)
..||||||||++|||+|+.+|+|++||||||+||+.+...+++.|+++.++ ++|+|+++|+++ ..+.+|+.
T Consensus 150 ~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI 221 (251)
T d1jj7a_ 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHI 221 (251)
T ss_dssp SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEE
T ss_pred CCCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEE
T ss_conf 6689547048998604456870787167576568536899999999976506989999959799--99859999
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-43 Score=290.01 Aligned_cols=196 Identities=26% Similarity=0.421 Sum_probs=147.3
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699999167012210455564210114178995772999995999978999998868999972899999948117
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1247)
.++|+|++|+|+. +.+.+|+|||+.+++||.+||+||||||||||+++|.|...+ .+|+|.+||.++
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred CEEEEEEEEEECC-----------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC--CCCEEEECCEEE
T ss_conf 9299999999089-----------996037424899849999999999999899999999735788--888999999994
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCCCC
Q ss_conf 84---333433899626898899817999999976606999999999999999999981997-------54334346888
Q 000867 757 KQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-------PLRQSLVGLPG 826 (1247)
Q Consensus 757 ~~---~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~~g~~~ 826 (1247)
.. ..+++.++||+|+..++ ..|++|++.+.. ...+.++ +.+.++..++. .-.++.+|..
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~- 136 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQ- 136 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTT-
T ss_pred CCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCC-----CCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCC-
T ss_conf 4002465535288982446557-840003522357-----5543888----9999999755788876320134432787-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 8888988879999999985199588995999999999999999999998738988999941699689984104
Q 000867 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 827 ~~~lSgGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
...||||||||++|||+|+.+|+|++||||||+||+.++..+++.++++. +++|+|+++|+++ ....+|+
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~ 206 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADR 206 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCE
T ss_conf 88669889898754434441651355647765559899999999999985-8998999978899--9984999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7.9e-43 Score=286.78 Aligned_cols=189 Identities=20% Similarity=0.234 Sum_probs=152.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-------CCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 989837999996898969829989998223699988946898764-------3127876554466888998999999976
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP-------QRTAAYISQHDVHIGEMTVRETLAFSAR 73 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~-------~~~i~yv~Q~d~l~~~LTVrEnL~f~a~ 73 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... ++.+|||+|++.+++.+||+||+.++..
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~ 109 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI 109 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHCCCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHH
T ss_conf 99998899998216557506887777---662699999857688555123125557788041241768668887757888
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCH
Q ss_conf 23898763022584599885089999864688888542100133569999998099544-56533687543366243312
Q 000867 74 CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVC-DDTLVGDEMVRGISGGQKKR 152 (1247)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~-~~T~VG~~~~~~LSGGQKrR 152 (1247)
.+..+. .+ .++....+.+.++.++|++. .+.. ...||||||||
T Consensus 110 ~~~~~~-~~------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~-----p~~LSGGqkQR 153 (230)
T d1l2ta_ 110 FKYRGA-MS------------------------------GEERRKRALECLKMAELEERFANHK-----PNQLSGGQQQR 153 (230)
T ss_dssp TCCSSC-CC------------------------------HHHHHHHHHHHHHHTTCCGGGTTCC-----GGGSCHHHHHH
T ss_pred HHCCCC-CC------------------------------HHHHHHHHHHHHHHHCHHHHHHCCC-----HHHCCHHHHHH
T ss_conf 722478-99------------------------------9999999999887624234553488-----02389999999
Q ss_pred HHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCC
Q ss_conf 479888735970866627985603799999999999997823988999953898259952013788569907876481
Q 000867 153 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1247)
Q Consensus 153 lsIA~al~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~ 230 (1247)
|+||||++.+|+++++||||||||+.++.+|++.+++..+..+.|+++ ++|...+ ...+|+|++|.+|++++.|+.
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~-vTHd~~~-a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV-VTHDINV-ARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE-ECSCHHH-HTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEE-ECCCHHH-HHHCCEEEEEECCEEEEECCC
T ss_conf 998756522788899468765469899999999999999843999999-8788899-986998999989999995257
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.4e-43 Score=290.05 Aligned_cols=198 Identities=26% Similarity=0.389 Sum_probs=159.7
Q ss_pred CCEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 80899996999991670122104555642101141789957729999959999789999988689999728999999481
Q 000867 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1247)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~ 754 (1247)
...++++|++|+|+. ..+.+|+|||+.+++||++||+||||||||||+++|+|...+ .+|+|.+||.
T Consensus 14 ~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~ 80 (255)
T d2hyda1 14 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGH 80 (255)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTE
T ss_pred CCEEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCCE
T ss_conf 887999988999599-----------997606443899839989999889998099999999712786--3000153998
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCC
Q ss_conf 1784---33343389962689889981799999997660699999999999999999998199754-------3343468
Q 000867 755 PKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGL 824 (1247)
Q Consensus 755 ~~~~---~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~ 824 (1247)
+... ..+++.++||+|++.+++ .|++|++.|.. + ..+.+ .+.++++..++.+. .|+.+|.
T Consensus 81 ~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 81 NIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred ECCCCCHHHHHHEEEEEECCCCCCC-CCHHHHHHCCC----C-CCCHH----HHHHHHHHHCCHHHHHHCCCCCCCHHCC
T ss_conf 7530788886341456510156899-87999985158----6-79999----9999999969799997362420103338
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 888888988879999999985199588995999999999999999999998738988999941699689984104
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
. ...||||||||++|||+|+.+|+|++||||||+||+.++..+++.++.+. +++|+|+++|+++ ....+|+
T Consensus 151 ~-g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ 221 (255)
T d2hyda1 151 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADK 221 (255)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSE
T ss_pred C-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCE
T ss_conf 8-89849999999999999855998999837654479779999999999875-3888999968999--9985999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7.3e-42 Score=280.62 Aligned_cols=201 Identities=21% Similarity=0.255 Sum_probs=169.9
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699999167012210455564210114178995772999995999978999998868999972899999948117
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1247)
.++++|++.++. ...+|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.+||.++
T Consensus 2 ~Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p--~~G~I~~~G~~i 66 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNI 66 (258)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCCEEECCEEE
T ss_conf 699997899989-------------99988150668869979999989998299999999747667--899779999993
Q ss_pred CCC----------------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CC
Q ss_conf 843----------------3343389962689889981799999997660699999999999999999998199754-33
Q 000867 757 KQE----------------TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-RQ 819 (1247)
Q Consensus 757 ~~~----------------~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~-~~ 819 (1247)
... ..++.+|||+|+..+++.+||.|++.+...... ..+..+.++++.++++.++|.+. .+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~ 144 (258)
T d1b0ua_ 67 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQG 144 (258)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred CCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 3677520000235176799974544899833231411010213656578762--99989999999999998299524430
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 43468888888988879999999985199588995999999999999999999998738988999941699689984104
Q 000867 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 820 ~~~g~~~~~~lSgGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
... ..||||||||++|||+|+.+|++|++||||+|||+.+...+++.++++.++|.|+|+++|++. ++..+-|+
T Consensus 145 ~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adr 218 (258)
T d1b0ua_ 145 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 218 (258)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCE
T ss_conf 682-----205677888989999984399878852455568878888998765541036883389948999-99986999
Q ss_pred C
Q ss_conf 8
Q 000867 900 G 900 (1247)
Q Consensus 900 ~ 900 (1247)
.
T Consensus 219 i 219 (258)
T d1b0ua_ 219 V 219 (258)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7.8e-43 Score=286.81 Aligned_cols=198 Identities=25% Similarity=0.325 Sum_probs=157.6
Q ss_pred CEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 08999969999916701221045556421011417899577299999599997899999886899997289999994811
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~ 755 (1247)
..++++|++|+|+. ....+|+|+|+.+++||++||+||||||||||+++|+|...+ .+|+|.+||.+
T Consensus 12 g~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 78 (253)
T d3b60a1 12 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHD 78 (253)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEE
T ss_pred EEEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCCC
T ss_conf 07999988999299-----------997635332899859999999999998599999998621688--84689878801
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCC
Q ss_conf 784---33343389962689889981799999997660699999999999999999998199754-------33434688
Q 000867 756 KKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-------RQSLVGLP 825 (1247)
Q Consensus 756 ~~~---~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 825 (1247)
+.. ..+++.++||+|+..++ ..|+++++.+.. +...+.++ ++++++..++.+. -++.++..
T Consensus 79 i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~----~~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~~ 149 (253)
T d3b60a1 79 LREYTLASLRNQVALVSQNVHLF-NDTVANNIAYAR----TEEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGEN 149 (253)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTT----TSCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred CCHHHHHHHHHEEEEEEECCCCC-CCCHHHHHHHCC----CCCCCHHH----HHHHHHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf 21110665420687995025447-862024332057----22089999----9999999817999973554410143488
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 88888988879999999985199588995999999999999999999998738988999941699689984104
Q 000867 826 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 826 ~~~~lSgGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
...||||||||++|||+|+.+|+|++||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|+
T Consensus 150 -~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~ 219 (253)
T d3b60a1 150 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADE 219 (253)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSE
T ss_pred -CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCE
T ss_conf -89849999999999999954998899516444589889999999998752-2788999988799--9985999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.3e-42 Score=281.48 Aligned_cols=202 Identities=24% Similarity=0.260 Sum_probs=169.1
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699999167012210455564210114178995772999995999978999998868999972899999948117
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1247)
-++.+|++.++. ...+|+|||+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 4 iL~v~nlsk~yg-------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p--~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 699977899979-------------96887121799889979999999998499999999779768--873799999966
Q ss_pred CCC---C-CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC----------CCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 843---3-343389962689889981799999997660699----------99999999999999999819975433434
Q 000867 757 KQE---T-FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP----------PEVDSETQKMFIEEIMELVELNPLRQSLV 822 (1247)
Q Consensus 757 ~~~---~-~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~----------~~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 822 (1247)
... . .++-++|++|+..+++.+||.|++.+++..+.. .....++..+.+.++++.+++.+..|..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH
T ss_conf 40569999983387257764247887423214301333034504566542135328999999999987619630205953
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 68888888988879999999985199588995999999999999999999998738988999941699689984104
Q 000867 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 823 g~~~~~~lSgGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
+ .||||||||++|||+|+.+|++|+|||||+|||+.+...+++.+++++.+|.|||+++|+.. ++.+.-|+
T Consensus 149 ~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Dr 219 (254)
T d1g6ha_ 149 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDH 219 (254)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSE
T ss_pred H-----HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 5-----69918888999999997592723243976569999999999999999978998999947699-99986999
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.4e-42 Score=285.16 Aligned_cols=193 Identities=21% Similarity=0.230 Sum_probs=163.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 98983799999689896982998999822369998894689876--4312787655446688899899999997623898
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV--PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~--~~~~i~yv~Q~d~l~~~LTVrEnL~f~a~l~~~~ 78 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|.+..+.. .++.++||||++.+++++|++||+.|.+.+.+..
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~ 106 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS 106 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99999999999999999996698878---887999867244683988721867500154687866778889899861799
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 76302258459988508999986468888854210013356999999809954456533687543366243312479888
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEM 158 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~a 158 (1247)
+++.+..++.+++.++|.+..+.+++ .||||||||++||||
T Consensus 107 ----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv~iA~a 147 (238)
T d1vpla_ 107 ----------------------------------SSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARA 147 (238)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHHHHHHHHHHH
T ss_conf ----------------------------------89999999999986797888850453-----379989899999999
Q ss_pred HHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHHHH
Q ss_conf 7359708666279856037999999999999978239889999538982599520137885699078764810289999
Q 000867 159 MVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFF 237 (1247)
Q Consensus 159 l~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~~~l~~~f 237 (1247)
++.+|++++|||||+|||+.++.++++.+++.+. .+. +++.++|..+++..++|+|++|++|++++.|+++++...+
T Consensus 148 l~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~-tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 148 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGL-TILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC-EEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCC-EEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 8659998873379889798999999999999996-599-8999959899999969999999899999992899998652
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=8.5e-42 Score=280.19 Aligned_cols=200 Identities=24% Similarity=0.340 Sum_probs=167.1
Q ss_pred CEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 08999969999916701221045556421011417899577299999599997899999886899997289999994811
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~ 755 (1247)
.-++.+|++.++. .+.+|+|||+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p--~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred EEEEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCCC
T ss_conf 0799961899989-------------98888302578889979999999998599999999678888--80389842443
Q ss_pred CCCC---CC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 7843---33-433899626898899817999999976606999999999999999999981-997543343468888888
Q 000867 756 KKQE---TF-TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELV-ELNPLRQSLVGLPGESGL 830 (1247)
Q Consensus 756 ~~~~---~~-~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~g~~~~~~l 830 (1247)
.... .. +.-++|++|+..+++.+||+|++.+.+..+.+ .+..++.++++++.+ ++.+..+..++ .|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLGG-----TL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBSS-----SS
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCHHHHHHCCHH-----HC
T ss_conf 446608888874235567655457763699999988873278----889999999999874176888758543-----38
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCC
Q ss_conf 9888799999999851995889959999999999999999999987389889999416996899841048
Q 000867 831 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEG 900 (1247)
Q Consensus 831 SgGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~~~i~~~fD~~ 900 (1247)
|||||||++||++|+.+|++|+|||||+|||+.+...+++.+++++++|.|||+++|+.. ++.++-|+.
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv 209 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYG 209 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEE
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 999999999999998299874003988679999999999999999968998999958899-999969999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.9e-42 Score=284.39 Aligned_cols=204 Identities=25% Similarity=0.321 Sum_probs=162.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 9898379999968989698299899982236999889468987643----127876554466888998999999976238
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ----RTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~----~~i~yv~Q~d~l~~~LTVrEnL~f~a~l~~ 76 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.....+ +.++|++|++.+++++||+||+.+++..++
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~ 108 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG 108 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCC
T ss_conf 99999999984999999997797688---737999999664056999998338725776424788742321430133303
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 98763022584599885089999864688888542100133569999998099544565336875433662433124798
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTG 156 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA 156 (1247)
... ....-... .. ..+++....++++++.+++.+..+..++ .|||||||||+||
T Consensus 109 ~~~-------~~~~~~~~-~~-------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA 162 (254)
T d1g6ha_ 109 ESP-------LNSLFYKK-WI-------------PKEEEMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIG 162 (254)
T ss_dssp SCH-------HHHHHHCS-SC-------------CCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHH
T ss_pred CCC-------HHHHHHHC-CC-------------CCHHHHHHHHHHHHHHCCCCHHCCCCHH-----HCCCHHHHHHHHH
T ss_conf 450-------45665421-35-------------3289999999999876196302059535-----6991888899999
Q ss_pred HHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 8873597086662798560379999999999999782398899995389825995201378856990787648102899
Q 000867 157 EMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 157 ~al~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~~~l~~ 235 (1247)
||+..+|++++|||||+|||+.++.++++.+++.+. . +++++.++|..+++..++|+|++|++|++++.|+++++.+
T Consensus 163 raL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~-g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 163 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred HHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 999759272324397656999999999999999997-8-9989999476999998699999996998999966899865
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-41 Score=279.25 Aligned_cols=193 Identities=23% Similarity=0.355 Sum_probs=150.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989998223699988946898764---31278765544668889989999999762389
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~---~~~i~yv~Q~d~l~~~LTVrEnL~f~a~l~~~ 77 (1247)
.++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++.++ +.||+|||.++....
T Consensus 31 ~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~-- 104 (241)
T d2pmka1 31 VIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLANPGM-- 104 (241)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTSTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCCCCC--
T ss_conf 99999999998999999997357888---889999999944002465535288982446557-840003522357554--
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87630225845998850899998646888885421001335699999980995445653368754336624331247988
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~ 157 (1247)
..+....++.... . .-....++.+.+|.+|+.+. .|||||||||+|||
T Consensus 105 -----------------------~~~~~~~~~~~~~-----~---~~~i~~~~~~~~t~i~~~g~-~LSGGq~QRvalAR 152 (241)
T d2pmka1 105 -----------------------SVEKVIYAAKLAG-----A---HDFISELREGYNTIVGEQGA-GLSGGQRQRIAIAR 152 (241)
T ss_dssp -----------------------CHHHHHHHHHHHT-----C---HHHHTTSTTGGGSBCSTTTT-CCCHHHHHHHHHHH
T ss_pred -----------------------CHHHHHHHHHHHH-----H---HHHHHHHHCCHHHHCCCCCC-CCCHHHHHHHHHHH
T ss_conf -----------------------3888999999975-----5---78887632013443278788-66988989875443
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 873597086662798560379999999999999782398899995389825995201378856990787648102899
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 158 al~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~~~l~~ 235 (1247)
|++.+|+|++||||||+||+.++.+|++.+++.. .++|+++ ++|.. +....+|+|++|++|+++++|+++++.+
T Consensus 153 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~-itH~l-~~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 153 ALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVII-IAHRL-STVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp HHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEE-ECSSG-GGGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH--CCCEEEE-EECCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 4441651355647765559899999999999985--8998999-97889-9998499999998999999889999982
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.1e-42 Score=284.11 Aligned_cols=190 Identities=24% Similarity=0.324 Sum_probs=153.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC----CCEEEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 989837999996898969829989998223699988946898764----3127876554466888998999999976238
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP----QRTAAYISQHDVHIGEMTVRETLAFSARCQG 76 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~----~~~i~yv~Q~d~l~~~LTVrEnL~f~a~l~~ 76 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... +..++|++|+..+++.+||+||+.+.+....
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~ 110 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK 110 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 99999999985999999996788888---038984244344660888887423556765545776369999998887327
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 987630225845998850899998646888885421001335699999980-9954456533687543366243312479
Q 000867 77 VGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVL-GLEVCDDTLVGDEMVRGISGGQKKRVTT 155 (1247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l-~L~~~~~T~VG~~~~~~LSGGQKrRlsI 155 (1247)
.. . ..++..+.++..+ +|.+..+..++ .|||||||||+|
T Consensus 111 ~~---~--------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSGG~~Qrv~i 150 (240)
T d1ji0a_ 111 DK---E--------------------------------GIKRDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAI 150 (240)
T ss_dssp CS---S--------------------------------HHHHHHHHHHHHCHHHHTTTTSBSS-----SSCHHHHHHHHH
T ss_pred CH---H--------------------------------HHHHHHHHHHHHHHCHHHHHHCCHH-----HCCHHHHHHHHH
T ss_conf 88---8--------------------------------9999999999874176888758543-----389999999999
Q ss_pred HHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 88873597086662798560379999999999999782398899995389825995201378856990787648102899
Q 000867 156 GEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 156 A~al~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~~~l~~ 235 (1247)
|||++.+|++++|||||+|||+.++.++++.+++... .+ ++++.++|...++..++|+|++|.+|++++.|+++++.+
T Consensus 151 AraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g-~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EG-TTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT-CCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 9999829987400398867999999999999999996-89-989999588999999699999998999999848999842
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.8e-44 Score=295.21 Aligned_cols=196 Identities=28% Similarity=0.414 Sum_probs=151.5
Q ss_pred EEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99996999991670122104555642101141789957729999959999789999988689999728999999481178
Q 000867 678 LTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 757 (1247)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~~ 757 (1247)
++++|++|+|+ +.+.+|+|||+.++|||++||+||||||||||+++|+|...+ .+|+|.+||.++.
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCC--CCCEEEECCEEEC
T ss_conf 79998899879------------998414225899859999999999999799999999996098--9877988998844
Q ss_pred C---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCCCCC
Q ss_conf 4---333433899626898899817999999976606999999999999999999981997-------543343468888
Q 000867 758 Q---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-------PLRQSLVGLPGE 827 (1247)
Q Consensus 758 ~---~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~~g~~~~ 827 (1247)
. ..+++.++||+|++.+++ .|++|++.+... ...+.+. +++.++..++. +..++.+|.. .
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE----GDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT----SCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred CCCHHHHHHHEEEECCCCCCCC-CCHHHHEECCCC----CCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCC-C
T ss_conf 2467888743679756654578-534543012445----5542356----7789999975554203742101523687-8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCC
Q ss_conf 8889888799999999851995889959999999999999999999987389889999416996899841048
Q 000867 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEG 900 (1247)
Q Consensus 828 ~~lSgGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~~~i~~~fD~~ 900 (1247)
..||||||||++|||+|+.+|+|++||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|+.
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i 207 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKI 207 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEE
T ss_conf 9879999999999999852998999658865569889999988788871-7998999978799--99849999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3e-41 Score=276.70 Aligned_cols=193 Identities=23% Similarity=0.362 Sum_probs=151.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 98983799999689896982998999822369998894689876---431278765544668889989999999762389
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~---~~~~i~yv~Q~d~l~~~LTVrEnL~f~a~l~~~ 77 (1247)
.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+.. .|+.++||+|++.++ ..||+|||.|+...
T Consensus 46 ~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~~~--- 118 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGRPT--- 118 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGCSS---
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCCCCC-CCCHHHHHHCCCCC---
T ss_conf 99998899980999999997127863---000153998753078888634145651015689-98799998515867---
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87630225845998850899998646888885421001335699999980995445653368754336624331247988
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~ 157 (1247)
...+...+++.... ..+ ....|+++.+|.+|+.+. .||||||||++|||
T Consensus 119 ----------------------~~~~~~~~al~~~~-----l~~---~i~~lp~gl~t~i~~~g~-~LSgGq~QRi~iAR 167 (255)
T d2hyda1 119 ----------------------ATDEEVVEAAKMAN-----AHD---FIMNLPQGYDTEVGERGV-KLSGGQKQRLSIAR 167 (255)
T ss_dssp ----------------------CCHHHHHHHHHHTT-----CHH---HHHTSTTGGGCBCCGGGT-TSCHHHHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHC-----CHH---HHHHCCCCCCCHHCCCCC-CCCHHHHHHHHHHH
T ss_conf ----------------------99999999999969-----799---997362420103338889-84999999999999
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 873597086662798560379999999999999782398899995389825995201378856990787648102899
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 158 al~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~~~l~~ 235 (1247)
|++.+|+|++||||||+||+.++..|++.+++.. .++|+++ ++|. .+....+|+|++|++|+++++|+++++.+
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~~l~~l~--~~~TvI~-itH~-~~~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLI-VAHR-LSTITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEE-ECSS-GGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEE-EECC-HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9855998999837654479779999999999875--3888999-9689-99998599999998999999889999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.1e-42 Score=282.99 Aligned_cols=194 Identities=22% Similarity=0.316 Sum_probs=150.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 98983799999689896982998999822369998894689876---431278765544668889989999999762389
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~---~~~~i~yv~Q~d~l~~~LTVrEnL~f~a~l~~~ 77 (1247)
.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+.. .++.++||+|++.+++. ||+||+.++.....
T Consensus 30 ~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~- 104 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDY- 104 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTSCS-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCCCCC-
T ss_conf 99999999997999999999960989---87798899884424678887436797566545785-34543012445554-
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87630225845998850899998646888885421001335699999980995445653368754336624331247988
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~ 157 (1247)
. ..+... ..+.+... -....++++.+|.+|+.+. .|||||||||+|||
T Consensus 105 ----~-~~~~~~---------------~~~~~~~~-----------~~~~~~~~~~~~~i~~~g~-~LSGGqkQRv~iAR 152 (242)
T d1mv5a_ 105 ----T-DEDLWQ---------------VLDLAFAR-----------SFVENMPDQLNTEVGERGV-KISGGQRQRLAIAR 152 (242)
T ss_dssp ----C-HHHHHH---------------HHHHHTCT-----------TTTTSSTTGGGCEESTTSB-CCCHHHHHHHHHHH
T ss_pred ----C-HHHHHH---------------HHHHHHHH-----------HHHCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHH
T ss_conf ----2-356778---------------99999755-----------5420374210152368789-87999999999999
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 873597086662798560379999999999999782398899995389825995201378856990787648102899
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 158 al~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~~~l~~ 235 (1247)
|++.+|+|++||||||+||+.++.+|++.+++.. .+.|+++ ++|.. +....+|+|++|++|+++++|+++++.+
T Consensus 153 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~-itH~l-~~~~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 153 AFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLV-IAHRL-STIVDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp HHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEE-ECCSH-HHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEE-EECCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9852998999658865569889999988788871--7998999-97879-9998499999998999999999999986
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.1e-41 Score=277.67 Aligned_cols=191 Identities=20% Similarity=0.267 Sum_probs=156.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC----------------CCCEEEEECCCCCCCCCCCH
Q ss_conf 98983799999689896982998999822369998894689876----------------43127876554466888998
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV----------------PQRTAAYISQHDVHIGEMTV 64 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~----------------~~~~i~yv~Q~d~l~~~LTV 64 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.+|||+|++.+++.+||
T Consensus 30 i~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv 106 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 106 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHC
T ss_conf 99999899982999999997476678---997799999933677520000235176799974544899833231411010
Q ss_pred HHHHHHHHH-CCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCC
Q ss_conf 999999976-23898763022584599885089999864688888542100133569999998099544-5653368754
Q 000867 65 RETLAFSAR-CQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVC-DDTLVGDEMV 142 (1247)
Q Consensus 65 rEnL~f~a~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~-~~T~VG~~~~ 142 (1247)
+||+.++.. ..+ + .. .+....+.++++.++|.+. .+.. .
T Consensus 107 ~env~~~~~~~~~----~------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----p 147 (258)
T d1b0ua_ 107 LENVMEAPIQVLG----L------SK------------------------HDARERALKYLAKVGIDERAQGKY-----P 147 (258)
T ss_dssp HHHHHHHHHHTTC----C------CH------------------------HHHHHHHHHHHHHTTCCHHHHTSC-----G
T ss_pred CHHHHHHHHHHCC----C------CH------------------------HHHHHHHHHHHHHCCCCHHHHCCC-----C
T ss_conf 2136565787629----9------98------------------------999999999999829952443068-----2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCC
Q ss_conf 33662433124798887359708666279856037999999999999978239889999538982599520137885699
Q 000867 143 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDA 222 (1247)
Q Consensus 143 ~~LSGGQKrRlsIA~al~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G 222 (1247)
..|||||||||+||||++.+|+++++||||+|||+.++.+|++.+++... .+ ++++.++|...++..++|+|++|.+|
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g-~til~vtHdl~~~~~~adri~vm~~G 225 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EG-KTMVVVTHEMGFARHVSSHVIFLHQG 225 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TT-CCEEEECSCHHHHHHHCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CC-CCEEEEECCHHHHHHHCCEEEEEECC
T ss_conf 20567788898999998439987885245556887888899876554103-68-83389948999999869999999799
Q ss_pred CEEEECCCCHHHH
Q ss_conf 0787648102899
Q 000867 223 QIVYQGPRELVLD 235 (1247)
Q Consensus 223 ~vv~~G~~~~l~~ 235 (1247)
++++.|+++++..
T Consensus 226 ~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 226 KIEEEGDPEQVFG 238 (258)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999849999983
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-40 Score=272.52 Aligned_cols=196 Identities=20% Similarity=0.338 Sum_probs=152.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989998223699988946898764---31278765544668889989999999762389
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~---~~~i~yv~Q~d~l~~~LTVrEnL~f~a~l~~~ 77 (1247)
.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+... ++.++||+|++.+++ .||+||+.|+...+.
T Consensus 42 ~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~~- 116 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKP- 116 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCC-
T ss_conf 99999999984999999986143787---6899889985311013788877654045650027-634655454210130-
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87630225845998850899998646888885421001335699999980995445653368754336624331247988
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~ 157 (1247)
.......++... ...-...+|+++.+|.+|+.+. .|||||||||+|||
T Consensus 117 -----------------------~~~~~~~~~~~~--------~~~~~i~~l~~g~~~~i~~~~~-~LSGGqkQRvaiAR 164 (251)
T d1jj7a_ 117 -----------------------TMEEITAAAVKS--------GAHSFISGLPQGYDTEVDEAGS-QLSGGQRQAVALAR 164 (251)
T ss_dssp -----------------------CHHHHHHHHHHH--------TCHHHHHTSTTGGGCBCCSSCS-SSCHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHH--------HHHHHHHHCCCCCHHHHHCCCC-CCCHHHCEEEEEEE
T ss_conf -----------------------278899999999--------8999998561211136751676-68954704899860
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 873597086662798560379999999999999782398899995389825995201378856990787648102899
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 158 al~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~~~l~~ 235 (1247)
|++.+|+|++||||||+||+.++.+|++.+++..+..++|+++ ++|.. +....+|+|++|++|+++++|+++++.+
T Consensus 165 al~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~-itH~l-~~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 165 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLL-ITQHL-SLVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEE-ECSCH-HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 4456870787167576568536899999999976506989999-95979-9998599999998999999889999985
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.6e-41 Score=277.05 Aligned_cols=179 Identities=23% Similarity=0.362 Sum_probs=157.5
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 417899577299999599997899999886899997289999994811784-3334338996268988998179999999
Q 000867 708 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFTRISGYCEQNDIHSPFVTVYESLLY 786 (1247)
Q Consensus 708 ~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~d~~~~~ltv~e~l~f 786 (1247)
|+|+.+. +|.++|+||||||||||+++|+|...+ .+|+|.+||.++.. ...+|.+|||+|++.++|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCC--CCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-979999979998099999999739998--9628999999988699899285225231443522015576665
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 76606999999999999999999981997543343468888888988879999999985199588995999999999999
Q 000867 787 SAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866 (1247)
Q Consensus 787 ~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~ 866 (1247)
+. + ..+..+++++++++++.+||.+..+.... .||||||||++|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32--3---36778899999999986383756657944-----48999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHCC
Q ss_conf 999999998738-9889999416996899841048
Q 000867 867 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEG 900 (1247)
Q Consensus 867 ~i~~~l~~~~~~-~~tvi~~~Hqp~~~i~~~fD~~ 900 (1247)
.+++.++++.++ |.|+|+++|++. ++..+.|+.
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri 197 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEV 197 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEE
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 9999999998743976999818999-999969999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-40 Score=272.36 Aligned_cols=194 Identities=23% Similarity=0.366 Sum_probs=150.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989998223699988946898764---31278765544668889989999999762389
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~---~~~i~yv~Q~d~l~~~LTVrEnL~f~a~l~~~ 77 (1247)
.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+... ++.++||+|++.++ ..|+++|+.++..-.
T Consensus 43 ~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~~~~-- 116 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLF-NDTVANNIAYARTEE-- 116 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTTTSC--
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECCCCC-CCCHHHHHHHCCCCC--
T ss_conf 99999999985999999986216888---468987880121110665420687995025447-862024332057220--
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87630225845998850899998646888885421001335699999980995445653368754336624331247988
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~ 157 (1247)
+. .+.+.+++... . . .+.+ -.|+++.+|.+|+.+. .|||||||||+|||
T Consensus 117 ---~~-------------------~~~i~~a~~~~-~----l-~~~i--~~l~~gl~t~~~~~~~-~LSGGqkQRvaiAR 165 (253)
T d3b60a1 117 ---YS-------------------REQIEEAARMA-Y----A-MDFI--NKMDNGLDTIIGENGV-LLSGGQRQRIAIAR 165 (253)
T ss_dssp ---CC-------------------HHHHHHHHHTT-T----C-HHHH--HHSTTGGGSBCCTTSC-SSCHHHHHHHHHHH
T ss_pred ---CC-------------------HHHHHHHHHHH-H----H-HHHH--HHCCCCCHHHHCCCCC-CCCHHHHHHHHHHH
T ss_conf ---89-------------------99999999998-1----7-9999--7355441014348889-84999999999999
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 873597086662798560379999999999999782398899995389825995201378856990787648102899
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 158 al~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~~~l~~ 235 (1247)
|++.+|+|++||||||+||+.++..|++.+++.. .++|+++ ++|.. +....||+|++|++|+++++|+++++.+
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~-itH~l-~~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLV-IAHRL-STIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TTSEEEE-ECSCG-GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEE-EECCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9954998899516444589889999999998752--2788999-98879-9998599999998999999889999986
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.7e-41 Score=278.20 Aligned_cols=172 Identities=20% Similarity=0.325 Sum_probs=120.2
Q ss_pred CCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 42101141789957729999959999789999988689999728999999481178433343389962689889981799
Q 000867 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVY 781 (1247)
Q Consensus 702 ~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~d~~~~~ltv~ 781 (1247)
++++|+|+|+.+++||++||+||||||||||+++|+|...+ .+|.|.++|. ++|++|+..+++ .|++
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSGR----------VSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEECCSC----------EEEECSSCCCCS-EEHH
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCE----------EEEEECCCCCCC-CEEE
T ss_conf 97677375999859999999989998299999999579747--8828999999----------999816430267-6032
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 999997660699999999999999999998-------1997543343468888888988879999999985199588995
Q 000867 782 ESLLYSAWLRLPPEVDSETQKMFIEEIMEL-------VELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 854 (1247)
Q Consensus 782 e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~-------l~l~~~~~~~~g~~~~~~lSgGqrkr~~ia~~l~~~p~il~lD 854 (1247)
|++.|.. ...... .+.+++. ..+.+..++.++.. ...||||||||++|||+|+.+|+|++||
T Consensus 115 eni~~~~------~~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLD 183 (281)
T d1r0wa_ 115 ENIIFGV------SYDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLD 183 (281)
T ss_dssp HHHTTTS------CCCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred CCCCCCC------CCCCHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf 1420333------456057----9999999776999984612332355554-2377999999999999998696351333
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 999999999999999999998738988999941699689984104
Q 000867 855 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 855 EpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
|||++||+.+...+++.+......++|+|+++|++ +....+|+
T Consensus 184 EPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDr 226 (281)
T d1r0wa_ 184 SPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADK 226 (281)
T ss_dssp SCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCE
T ss_conf 85544898999999999998862899999992528--99985999
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.4e-37 Score=253.24 Aligned_cols=183 Identities=21% Similarity=0.306 Sum_probs=151.0
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699999167012210455564210114178995772999995999978999998868999972899999948117
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1247)
.++++|++++++ +.+|+|+|+.+++||.++|+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p--~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred EEEEEEEEEEEC--------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEH
T ss_conf 599998999939--------------9288420889859989999999997199999999662056--778899998962
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 84333433899626898899817999999976606999999999999999999981997543343468888888988879
Q 000867 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1247)
Q Consensus 757 ~~~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrk 836 (1247)
.. .+...+|++|+..+...+|+.|++.+.+.++... .+.+ .+.+.++.+++.+..+. + ..|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~-~-----~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNKN----EIMDALESVEVLDLKKK-L-----GELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCHH----HHHHHHHHTTCCCTTSB-G-----GGSCHHHHH
T ss_pred HH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-CCHH----HHHHHHHHCCCCCCCCC-C-----CCCCCCHHH
T ss_conf 67--3670899950135788828999999999754886-3799----99999987488563012-6-----868971888
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 9999999851995889959999999999999999999987389889999416
Q 000867 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 888 (1247)
Q Consensus 837 r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hq 888 (1247)
|++||++++.+|++++|||||+|||..+...+++.+++..+++.++|+++|+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~ 184 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 184 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 8999998864998999868620169999999999999998679999999916
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.8e-37 Score=250.48 Aligned_cols=183 Identities=23% Similarity=0.324 Sum_probs=142.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 98983799999689896982998999822369998894689876431278765544668889989999999762389876
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~~~i~yv~Q~d~l~~~LTVrEnL~f~a~l~~~~~~ 80 (1247)
+++|+||||||||||+++|+|.++|+ +|+|.++| .++||+|++++++. ||+||+.|+...
T Consensus 64 ~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-tv~eni~~~~~~------ 123 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMPG-TIKENIIFGVSY------ 123 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCSE-EHHHHHTTTSCC------
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCCCCCC-EEECCCCCCCCC------
T ss_conf 99999899982999999995797478---82899999----------99998164302676-032142033345------
Q ss_pred CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 30225845998850899998646888885421001335699999980995445653368754336624331247988873
Q 000867 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~al~ 160 (1247)
+. .. .....+.+.. ......++++.+|.+|+.+. .|||||||||+||||++
T Consensus 124 -~~-~~---------------~~~~~~~~~~-----------~~~i~~l~~~~~~~~~~~~~-~LSgGqkQRv~lARaL~ 174 (281)
T d1r0wa_ 124 -DE-YR---------------YKSVVKACQL-----------QQDITKFAEQDNTVLGEGGV-TLSGGQRARISLARAVY 174 (281)
T ss_dssp -CH-HH---------------HHHHHHHTTC-----------HHHHTTSTTGGGCEECTTCT-TSCHHHHHHHHHHHHHH
T ss_pred -CC-HH---------------HHHHHHHHHH-----------HHHHHHCHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHH
T ss_conf -60-57---------------9999999776-----------99998461233235555423-77999999999999998
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 597086662798560379999999999999782398899995389825995201378856990787648102899
Q 000867 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235 (1247)
Q Consensus 161 ~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~~~l~~ 235 (1247)
.+|+|++||||||+||+.++.++++.+..... .++|+++ ++|.. +....+|+|++|++|+++++|+++++..
T Consensus 175 ~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~-itH~~-~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 175 KDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRIL-VTSKM-EHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEE-ECSCH-HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECHH-HHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 69635133385544898999999999998862-8999999-92528-9998599999998999999878999960
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.9e-37 Score=247.86 Aligned_cols=180 Identities=21% Similarity=0.340 Sum_probs=150.7
Q ss_pred CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCH
Q ss_conf 1011417899577299999599997899999886899997289999994811784---3334338996268988998179
Q 000867 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPFVTV 780 (1247)
Q Consensus 704 ~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~d~~~~~ltv 780 (1247)
..|++||+.+++||++||+||||||||||+++|+|... .+|+|.++|.+... .......+|++|+.......++
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCH
T ss_conf 15558888994898999998999809999999948879---955999999999869989998640245121357744209
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEEE
Q ss_conf 999999766069999999999999999999819975433434688888889888799999999851-------9958899
Q 000867 781 YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVA-------NPSIIFM 853 (1247)
Q Consensus 781 ~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrkr~~ia~~l~~-------~p~il~l 853 (1247)
.+.+.+... .. .+.+.++++++.+++.+..+..+. .||||||||++||++|+. +|++++|
T Consensus 90 ~~~~~~~~~----~~----~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~al~~~~p~~~p~p~llll 156 (231)
T d1l7vc_ 90 WHYLTLHQH----DK----TRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 156 (231)
T ss_dssp HHHHHHHCS----CT----TCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHCCC----HH----HHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 887641001----46----689999999986598767676844-----56998899999999998517133899889997
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCC
Q ss_conf 59999999999999999999987389889999416996899841048
Q 000867 854 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEG 900 (1247)
Q Consensus 854 DEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~~~i~~~fD~~ 900 (1247)
||||+|||..+...+.+.++.+.++|.|||+++|++. ++.+.-|+.
T Consensus 157 DEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri 202 (231)
T d1l7vc_ 157 DEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRA 202 (231)
T ss_dssp SSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 1877778989999999999999867999999967799-999979999
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-36 Score=245.88 Aligned_cols=184 Identities=22% Similarity=0.284 Sum_probs=148.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 9898379999968989698299899982236999889468987643---1278765544668889989999999762389
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~---~~i~yv~Q~d~l~~~LTVrEnL~f~a~l~~~ 77 (1247)
+++|+||||||||||+++|+|.. ++ +|+|.++|.++.....+ ...+|.+|+.......++.+++.++..-+
T Consensus 27 i~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 100 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK-- 100 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCT--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CC---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCHH--
T ss_conf 99999899980999999994887-99---5599999999986998999864024512135774420988764100146--
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87630225845998850899998646888885421001335699999980995445653368754336624331247988
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~ 157 (1247)
..++..+++++.++|.+..+..+ +.||||||||++||+
T Consensus 101 -------------------------------------~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~ 138 (231)
T d1l7vc_ 101 -------------------------------------TRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAA 138 (231)
T ss_dssp -------------------------------------TCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHH
T ss_conf -------------------------------------68999999998659876767684-----456998899999999
Q ss_pred HHHC-------CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCC
Q ss_conf 8735-------970866627985603799999999999997823988999953898259952013788569907876481
Q 000867 158 MMVG-------PALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPR 230 (1247)
Q Consensus 158 al~~-------~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~ 230 (1247)
+++. +|++++|||||+|||+.++..+++.+++... .+ ++++.++|...++...+|+|++|++|++++.|++
T Consensus 139 al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g-~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~ 216 (231)
T d1l7vc_ 139 VVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QG-LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 216 (231)
T ss_dssp HHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TT-CEEEECCCCHHHHHHHCSBCCBEETTEECCCSBH
T ss_pred HHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 998517133899889997187777898999999999999986-79-9999996779999997999999979989998899
Q ss_pred CHHH
Q ss_conf 0289
Q 000867 231 ELVL 234 (1247)
Q Consensus 231 ~~l~ 234 (1247)
+++.
T Consensus 217 ~ev~ 220 (231)
T d1l7vc_ 217 EEVL 220 (231)
T ss_dssp HHHS
T ss_pred HHHH
T ss_conf 9981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.8e-33 Score=225.85 Aligned_cols=169 Identities=20% Similarity=0.241 Sum_probs=132.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 98983799999689896982998999822369998894689876431278765544668889989999999762389876
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 80 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~~~i~yv~Q~d~l~~~LTVrEnL~f~a~l~~~~~~ 80 (1247)
+++|+||||||||||+++|+|..+|+ +|+|.+||.++.. .+..++|++|+..+...+|++|++.+.+.+.+..
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-- 101 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-- 101 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC--
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC--
T ss_conf 99999999971999999996620567---7889999896267--3670899950135788828999999999754886--
Q ss_pred CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 30225845998850899998646888885421001335699999980995445653368754336624331247988873
Q 000867 81 YDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMV 160 (1247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~al~ 160 (1247)
.+ + ..+...++.+++.+.. .+ ...||||||||++||++++
T Consensus 102 ~~------~----------------------------~~~~~~l~~~~~~~~~-~~-----~~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 102 VN------K----------------------------NEIMDALESVEVLDLK-KK-----LGELSQGTIRRVQLASTLL 141 (200)
T ss_dssp CC------H----------------------------HHHHHHHHHTTCCCTT-SB-----GGGSCHHHHHHHHHHHHTT
T ss_pred CC------H----------------------------HHHHHHHHHCCCCCCC-CC-----CCCCCCCHHHHHHHHHHHH
T ss_conf 37------9----------------------------9999999874885630-12-----6868971888899999886
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECC
Q ss_conf 5970866627985603799999999999997823988999953898259952013788569
Q 000867 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 221 (1247)
Q Consensus 161 ~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~ 221 (1247)
.+|++++|||||+|||+.++.++++.+++..+. +++++++.||.. ..+|.+.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECHH----HHCCHHHHEEE
T ss_conf 499899986862016999999999999999867-999999991625----44161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.39 E-value=6.8e-15 Score=108.49 Aligned_cols=81 Identities=16% Similarity=0.033 Sum_probs=52.3
Q ss_pred CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCC
Q ss_conf 36624331247988873597086662798560379999999999999782398899995389825995201378856990
Q 000867 144 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQ 223 (1247)
Q Consensus 144 ~LSGGQKrRlsIA~al~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~ 223 (1247)
.+++|+++|.++++++..+|+++++|||....+. ....++.+.+.....+.++++ ++|. .+...+.|++..+.+|+
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~~~il~-~~h~-~~~~~~~~~i~~~~~~~ 156 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPNVNVVA-TIPI-RDVHPLVKEIRRLPGAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTTSEEEE-ECCS-SCCSHHHHHHHTCTTCE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCCCCCEEEE-EECC-HHHHHHHCEEEEEECCE
T ss_conf 6532013789999997409974230277731004--579999999875057978999-9744-77898636599871999
Q ss_pred EEEEC
Q ss_conf 78764
Q 000867 224 IVYQG 228 (1247)
Q Consensus 224 vv~~G 228 (1247)
++.-+
T Consensus 157 i~~v~ 161 (178)
T d1ye8a1 157 LIELT 161 (178)
T ss_dssp EEECC
T ss_pred EEEEC
T ss_conf 99989
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.31 E-value=1.3e-12 Score=93.93 Aligned_cols=139 Identities=15% Similarity=0.014 Sum_probs=79.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 99999599997899999886899997289999994811784333433899626898899817999999976606999999
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVD 797 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~ 797 (1247)
+++|.||||||||||+++++|.... ..|.+..++.+......+ .++..+...........+. ........
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~--~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKKR--TGFRIITTEGKKKIFSSKF------FTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC------C--CEEEEEETTCCEEEEEETT------CCCSSEET
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCC--CCCEEEECCCCHHHHHHH--HHHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_conf 8999989993899999999814888--864699877132888876--5311233667778875411------34554430
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-
Q ss_conf 9999999999999819975433434688888889888799999999851995889959999999999999999999987-
Q 000867 798 SETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 876 (1247)
Q Consensus 798 ~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~- 876 (1247)
. .+. ......+++|++++..+++++..+|+++++|||+...+ ........+.+..
T Consensus 72 ~-------------~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~ 127 (178)
T d1ye8a1 72 S-------------YGV---------NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMH 127 (178)
T ss_dssp T-------------EEE---------CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHT
T ss_pred H-------------HHC---------CCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHC
T ss_conf 2-------------303---------76256653201378999999740997423027773100--45799999998750
Q ss_pred HCCCEEEEEECCCC
Q ss_conf 38988999941699
Q 000867 877 DTGRTVVCTIHQPS 890 (1247)
Q Consensus 877 ~~~~tvi~~~Hqp~ 890 (1247)
+.+.++|.++|+..
T Consensus 128 ~~~~~il~~~h~~~ 141 (178)
T d1ye8a1 128 DPNVNVVATIPIRD 141 (178)
T ss_dssp CTTSEEEEECCSSC
T ss_pred CCCCEEEEEECCHH
T ss_conf 57978999974477
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=3.8e-09 Score=71.83 Aligned_cols=69 Identities=20% Similarity=0.249 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 88898887999999998----5199588995999999999999999999998738988999941699689984104
Q 000867 828 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqrkr~~ia~~l----~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
..+|+|||+...++..+ ..+++++++|||-++|++.....+.+.|+..++ +.-||+|+|.|. +.+.+|+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~ 290 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADL 290 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCC
T ss_conf 102577766777776655654226744554320335797899999999998554-887999989889--9973242
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.94 E-value=1.6e-08 Score=67.92 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=59.7
Q ss_pred CCCCCCCCCCHHHHHHHH----HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEE
Q ss_conf 433662433124798887----3597086662798560379999999999999782398899995389825995201378
Q 000867 142 VRGISGGQKKRVTTGEMM----VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 217 (1247)
Q Consensus 142 ~~~LSGGQKrRlsIA~al----~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~ 217 (1247)
...+|+|||+...++..+ ..++++++.|||-++||+.....+.+.+++... +.-++ ++.|++++.+.+|++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~Qvi--itTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFI--VITHNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEE--EECCCTTGGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEE--EEECCHHHHHHCCCEE
T ss_conf 1102577766777776655654226744554320335797899999999998554--88799--9989889997324289
Q ss_pred E--ECCCC
Q ss_conf 8--56990
Q 000867 218 L--LSDAQ 223 (1247)
Q Consensus 218 i--L~~G~ 223 (1247)
. +.+|.
T Consensus 293 ~v~~~~g~ 300 (308)
T d1e69a_ 293 GVTMVNGV 300 (308)
T ss_dssp EEEESSSC
T ss_pred EEEEECCE
T ss_conf 99996999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.74 E-value=1.4e-08 Score=68.15 Aligned_cols=70 Identities=16% Similarity=0.226 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 88898887999999998----5199588995999999999999999999998738988999941699689984104
Q 000867 828 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 828 ~~lSgGqrkr~~ia~~l----~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
..+|||||.++++|..+ ..+++++++|||+++||+.....+.+.|++++..+.-+|+|+|+|. +.+..|+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~ 404 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDA 404 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH--HHHHCCC
T ss_conf 3322304799999999999547999779996887778999999999999997289988999958789--9973661
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.53 E-value=1e-07 Score=62.65 Aligned_cols=75 Identities=19% Similarity=0.332 Sum_probs=57.1
Q ss_pred CCCCCCCCCCHHHHHHH--H--HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEE
Q ss_conf 43366243312479888--7--3597086662798560379999999999999782398899995389825995201378
Q 000867 142 VRGISGGQKKRVTTGEM--M--VGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 217 (1247)
Q Consensus 142 ~~~LSGGQKrRlsIA~a--l--~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~ 217 (1247)
...+|||||.++++|-. + +.++++++||||+++||+..+..+.+.|++.+. ..+-++ +++|.+++.+.+|+++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I-~iTH~~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFI-VISLKNTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEE-EECSCHHHHTTCSEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEE-EEECCHHHHHHCCCEE
T ss_conf 3332230479999999999954799977999688777899999999999999728--998899-9958789997366179
Q ss_pred EE
Q ss_conf 85
Q 000867 218 LL 219 (1247)
Q Consensus 218 iL 219 (1247)
..
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.85 E-value=0.00045 Score=39.46 Aligned_cols=46 Identities=11% Similarity=0.150 Sum_probs=34.5
Q ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCC
Q ss_conf 8519958899599999999999999999-999873898899994169
Q 000867 844 LVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQP 889 (1247)
Q Consensus 844 l~~~p~il~lDEpTsgLD~~~~~~i~~~-l~~~~~~~~tvi~~~Hqp 889 (1247)
...+.+++++||.-+|-|+.....+... ++.+.+.+..+++++|.+
T Consensus 111 ~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~ 157 (224)
T d1ewqa2 111 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF 157 (224)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred CCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH
T ss_conf 28977278554545686233200258888888862376137865202
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.71 E-value=0.0001 Score=43.50 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=25.6
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 5970866627985603799999999999997823988999953898259952
Q 000867 161 GPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 212 (1247)
Q Consensus 161 ~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~l 212 (1247)
....++++||..+|=|+.....+...+.+.-...+..+++++|+ .+...+
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~--~eL~~l 162 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHY--FELTAL 162 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCC--HHHHTC
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEEC--HHHHHH
T ss_conf 97727855454568623320025888888886237613786520--233322
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.70 E-value=3.4e-05 Score=46.62 Aligned_cols=35 Identities=26% Similarity=0.211 Sum_probs=28.2
Q ss_pred CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 10114178995772999995999978999998868
Q 000867 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 704 ~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
+-|+++.+-++||+++.|.|++|+||||++.-++-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 66888746978980899994799979999999997
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=0.00032 Score=40.44 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHC-CCEEEEEECCCC
Q ss_conf 999999998519958899599999999999999999-9998738-988999941699
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDT-GRTVVCTIHQPS 890 (1247)
Q Consensus 836 kr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~-l~~~~~~-~~tvi~~~Hqp~ 890 (1247)
+|++-......+.+++++||+-+|-++.....+... ++.+... ++.+++++|...
T Consensus 109 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 109 TETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 999999974546608853222358774566678987645432045442898524687
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.00038 Score=39.89 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=11.8
Q ss_pred EEEEEECCCCCCCHHHHHHHHH
Q ss_conf 0866627985603799999999
Q 000867 164 LALFMDEISTGLDSSTTFQIVN 185 (1247)
Q Consensus 164 ~IllLDEpTSgLDs~s~~~I~~ 185 (1247)
.++++||+.+|=++.....+..
T Consensus 122 sLvliDE~~~gT~~~eg~~l~~ 143 (234)
T d1wb9a2 122 SLVLMDEIGRGTSTYDGLSLAW 143 (234)
T ss_dssp EEEEEESCCCCSSSSHHHHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHH
T ss_conf 0885322235877456667898
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=0.0028 Score=34.38 Aligned_cols=150 Identities=19% Similarity=0.203 Sum_probs=71.4
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 95772999995999978999998868999972899999948117843334338996268988998179999999766069
Q 000867 713 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRL 792 (1247)
Q Consensus 713 ~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~ 792 (1247)
+.||+++.|.|++|+|||||+.-|+.....| .-.. +..... ...+-|+.-++.. -.+.+-+ .+..
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g----~~~~-~~~~~~---~~~vl~~~~E~~~---~~~~~Rl--~~~~-- 90 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGG----PDLL-EVGELP---TGPVIYLPAEDPP---TAIHHRL--HALG-- 90 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTC----CCTT-CCCCCC---CCCEEEEESSSCH---HHHHHHH--HHHH--
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCC----CCCC-CCCCCC---CCCEEEEECCCHH---HHHHHHH--HHHH--
T ss_conf 5589589999289998999999999999769----9721-112357---8736898512349---9999999--9986--
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC---C--CCHHHHHH
Q ss_conf 999999999999999999819975433434688888889888799999999851995889959999---9--99999999
Q 000867 793 PPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS---G--LDARAAAI 867 (1247)
Q Consensus 793 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrkr~~ia~~l~~~p~il~lDEpTs---g--LD~~~~~~ 867 (1247)
........ ....+.+.+....+... .......+.--.....+++++++|.-+. + -|......
T Consensus 91 -~~~~~~~~----~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~ 157 (274)
T d1nlfa_ 91 -AHLSAEER----QAVADGLLIQPLIGSLP--------NIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 157 (274)
T ss_dssp -TTSCHHHH----HHHHHHEEECCCTTSCC--------CTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred -HCCCHHHH----HCCCCCCEECCCCCCCC--------HHHHHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCHHHHHH
T ss_conf -23686665----31233323214567420--------357899999988752676589628135422665232256899
Q ss_pred HHHHHHHHHHC-CCEEEEEECCCC
Q ss_conf 99999998738-988999941699
Q 000867 868 VMRTVRNTVDT-GRTVVCTIHQPS 890 (1247)
Q Consensus 868 i~~~l~~~~~~-~~tvi~~~Hqp~ 890 (1247)
+++.++.++.. +++++++.|...
T Consensus 158 ~~~~l~~la~~~~~~vi~v~H~~K 181 (274)
T d1nlfa_ 158 VIGRMEAIAADTGCSIVFLHHASK 181 (274)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHCCCCCEEHHHHCCC
T ss_conf 998877776447975401310055
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.25 E-value=0.00016 Score=42.30 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77299999599997899999886899
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
+|...+++|+||.|||||+|.|.+..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 69808997889877888877305355
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.14 E-value=0.00015 Score=42.41 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=21.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 898379999968989698299899982236999
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVT 34 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~ 34 (1247)
++++|+||.|||||+|.|.|...- ..|+|.
T Consensus 98 ~~~~G~SGVGKSTLiN~L~~~~~~---~T~~vs 127 (225)
T d1u0la2 98 STMAGLSGVGKSSLLNAINPGLKL---RVSEVS 127 (225)
T ss_dssp EEEECSTTSSHHHHHHHHSTTCCC---C-----
T ss_pred EEEECCCCCCHHHHHHHHCCHHHH---HCCCCC
T ss_conf 899788987788887730535550---106842
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.91 E-value=0.00031 Score=40.50 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=17.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
+.+|+|||||||||+++.|..+.+
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999989999999999999984589
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.90 E-value=0.0037 Score=33.62 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=35.3
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHH
Q ss_conf 999985199588995999999999999999999998738988999941699-6899841
Q 000867 840 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS-IDIFESF 897 (1247)
Q Consensus 840 ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~-~~i~~~f 897 (1247)
+..+|=.+|++++..|.. |..++...+ +.+..|+.|+.|.|-.+ ..++..+
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~a~~~~~Rl 271 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNTAVGAVTRL 271 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSSSHHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCCHHHHHHHH
T ss_conf 999984138889845768---759999999----9972498589983367667665432
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.00016 Score=42.38 Aligned_cols=24 Identities=33% Similarity=0.263 Sum_probs=19.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
+++|+|++|||||||++.|+.++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.84 E-value=0.00045 Score=39.45 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=16.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77299999599997899999886899
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.|+++.|.||+||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.81 E-value=8e-05 Score=44.22 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77299999599997899999886899
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.|..++++|+||.|||||+|.|.+..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 35649998778734878987515176
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.76 E-value=0.0087 Score=31.26 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=21.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57729999959999789999988689
Q 000867 714 RPGVLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 714 ~~G~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
++..-+.+.||+|+|||++.++++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 98886786689988822899999998
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.74 E-value=0.00046 Score=39.40 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.++|+|++|+|||||++.|.|+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.00057 Score=38.78 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
.++|+|++|||||||++.|..+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.67 E-value=0.012 Score=30.26 Aligned_cols=149 Identities=16% Similarity=0.076 Sum_probs=68.3
Q ss_pred EEECE-EEEEECCEEEEEECCCCCCHHHHHHHHHC--CCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 01141-78995772999995999978999998868--9999728999999481178433343389962689889981799
Q 000867 705 LLNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVY 781 (1247)
Q Consensus 705 iL~~v-s~~~~~G~~~ai~G~sGsGKSTll~~l~g--~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~d~~~~~ltv~ 781 (1247)
-|+++ .|-+++|+++.|.|++|+|||+|..-++. ....+ .. ..|+.-+ .+..
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~---~~----------------~~~~s~e------~~~~ 68 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EP----------------GVFVTFE------ETPQ 68 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CC----------------EEEEESS------SCHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC---CC----------------CCCCCCC------CCHH
T ss_conf 798855689969839999947999999999999999998568---87----------------4201266------7999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHH--HCCCEEEEECCCC
Q ss_conf 999997660699999999999999999998199754334346888888898887-9999999985--1995889959999
Q 000867 782 ESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR-KRLTIAVELV--ANPSIIFMDEPTS 858 (1247)
Q Consensus 782 e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr-kr~~ia~~l~--~~p~il~lDEpTs 858 (1247)
+.......... .. +...+.............. .......... ..+.-....+ .+|++++.|--+.
T Consensus 69 ~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~ 136 (242)
T d1tf7a1 69 DIIKNARSFGW----DL-------AKLVDEGKLFILDASPDPE-GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTS 136 (242)
T ss_dssp HHHHHHGGGTC----CH-------HHHHHTTSEEEEECCCCSS-CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTT
T ss_pred HHHHHHHHCCC----CH-------HHHHHHCCHHHHHHCCCHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999998499----84-------8988714302444210335-444430245899999999998863122200207889
Q ss_pred CC----CHHHH-HHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99----99999-9999999998738988999941699
Q 000867 859 GL----DARAA-AIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 859 gL----D~~~~-~~i~~~l~~~~~~~~tvi~~~Hqp~ 890 (1247)
=. +.... ..+...++...+.++|++++.|...
T Consensus 137 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (242)
T d1tf7a1 137 VFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIE 173 (242)
T ss_dssp TSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9876057267899999999999863971688421025
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.0007 Score=38.24 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+||||+|||||.+.|.-+.
T Consensus 5 ivi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 5 YIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999998639
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.61 E-value=0.00062 Score=38.56 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=25.6
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 78995772999995999978999998868999
Q 000867 710 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 741 (1247)
Q Consensus 710 s~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~ 741 (1247)
...++.+.-+.|.|++||||||++++|.+...
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 99998378889994035662578999865301
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.60 E-value=0.00019 Score=41.80 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=10.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
++++|+||.|||||+|.|.|+.
T Consensus 100 ~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 100 TVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp EEEEESHHHHHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHCCHH
T ss_conf 9998778734878987515176
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.60 E-value=0.00047 Score=39.35 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=20.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
+++|+||+|||||||++.|+....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.51 E-value=0.00061 Score=38.60 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+|++|+|||||++.|+|+-
T Consensus 26 I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCCCHHHHHHHHCCCC
T ss_conf 9998999987999999852987
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.51 E-value=0.0011 Score=37.08 Aligned_cols=24 Identities=46% Similarity=0.527 Sum_probs=21.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
+.+|.||+||||||+.+.|+.+..
T Consensus 6 iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999988999988999999999959
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.48 E-value=0.00096 Score=37.34 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=14.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7729999959999789999988689
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
.+..+.|+|++||||||+.+.|+.+
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8718999899998989999999998
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.43 E-value=0.0011 Score=37.01 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577299999599997899999886899
Q 000867 714 RPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 714 ~~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
+.|..+.|+|++||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.40 E-value=0.00049 Score=39.19 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7299999599997899999886899
Q 000867 716 GVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 716 G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
|.++.|+||||||||||.+.|..+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7499998999999999999998458
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.39 E-value=0.0012 Score=36.68 Aligned_cols=23 Identities=30% Similarity=0.684 Sum_probs=11.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 72999995999978999998868
Q 000867 716 GVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 716 G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
|-.++|+||+||||||+.+.|+.
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHH
T ss_conf 88899982899988999999999
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.34 E-value=0.0014 Score=36.39 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.+||+|++|+|||||+|+|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79998999997899999995888
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.32 E-value=0.0012 Score=36.85 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|.||+|||||||.+.|+..+
T Consensus 10 I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 10 VAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998999999999984
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.00012 Score=43.15 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=17.8
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11417899577299999599997899999886
Q 000867 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 737 (1247)
Q Consensus 706 L~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~ 737 (1247)
.++.++.+.+| ++.|+|+|||||||+|++|.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 70279974998-08998899998799999999
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.30 E-value=0.00052 Score=39.06 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
..|+|++|||||||++.|..++.
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99980999989999999999998
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.29 E-value=0.00082 Score=37.79 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978999998868999
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRKT 741 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~~ 741 (1247)
.+.+.||+|+|||||.++|++...
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999889799889999999999865
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.27 E-value=0.0017 Score=35.79 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=15.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
.+||+|++|+|||||++.|.|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999778
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.25 E-value=0.0014 Score=36.38 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+|++|+|||||+|.|.|+.
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999988999999996898
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.0093 Score=31.07 Aligned_cols=49 Identities=8% Similarity=0.036 Sum_probs=30.7
Q ss_pred HHHCCCEEEEEECCCCC-----CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 87359708666279856-----037999999999999978239889999538982
Q 000867 158 MMVGPALALFMDEISTG-----LDSSTTFQIVNSIRQNIHILNGTAVISLLQPAP 207 (1247)
Q Consensus 158 al~~~~~IllLDEpTSg-----LDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~ 207 (1247)
....+++++++|.-+.- -|.....+++..++..+...+.+ ++.+||...
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~-vi~v~H~~K 181 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS-IVFLHHASK 181 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE-EEEEEEC--
T ss_pred HHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCC-EEHHHHCCC
T ss_conf 752676589628135422665232256899998877776447975-401310055
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.24 E-value=0.0014 Score=36.22 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=12.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978999998868
Q 000867 718 LTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g 738 (1247)
++||.|++|||||||.+.|+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789887899999999999
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.22 E-value=0.0012 Score=36.71 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978999998868
Q 000867 718 LTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g 738 (1247)
.++|.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.0011 Score=37.01 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
+.+|+|++||||||+.+.|+.++.
T Consensus 8 iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899989999898999999999869
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.22 E-value=0.0017 Score=35.73 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.++|+|++|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.22 E-value=0.0011 Score=36.87 Aligned_cols=22 Identities=55% Similarity=0.570 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+||+||||||+.+.|+-++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9898999999899999999997
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.21 E-value=0.00088 Score=37.61 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=13.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+|+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.19 E-value=0.0011 Score=36.86 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996898969829
Q 000867 2 TLLLGPPCSGKTTLLLALAG 21 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1247)
.+|.|+|||||||+.+.|..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989999999999999999
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.19 E-value=0.0018 Score=35.61 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+|++|+|||||++.|+|..
T Consensus 3 V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999998999999996777
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=6.5e-05 Score=44.80 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=18.5
Q ss_pred CEEEECCCCCCHHHHHHHHHC
Q ss_conf 989837999996898969829
Q 000867 1 MTLLLGPPCSGKTTLLLALAG 21 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G 21 (1247)
+|+|+|+|||||||+|++|.-
T Consensus 26 ~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 089988999987999999999
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.17 E-value=0.00093 Score=37.43 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999599997899999886899
Q 000867 717 VLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
..++|.||+|+|||||.+.|+.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.17 E-value=0.00077 Score=37.95 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|.||+||||||+.+.|+..+
T Consensus 5 I~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999980
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0021 Score=35.13 Aligned_cols=20 Identities=50% Similarity=0.865 Sum_probs=11.1
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 98379999968989698299
Q 000867 3 LLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~ 22 (1247)
+++|++++|||||++.|+|.
T Consensus 5 ~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 5 VIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEESTTSSHHHHHHHHHTS
T ss_pred EEECCCCCCHHHHHHHHHCC
T ss_conf 99899999899999999688
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.16 E-value=0.016 Score=29.55 Aligned_cols=137 Identities=18% Similarity=0.138 Sum_probs=66.1
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 7899577299999599997899999886899-997289999994811784333433899626898899817999999976
Q 000867 710 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSA 788 (1247)
Q Consensus 710 s~~~~~G~~~ai~G~sGsGKSTll~~l~g~~-~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~ 788 (1247)
.|-+++|+.+.|.|++|+|||+|..-++... ..+. ...|+.-+ .+..+......
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~-------------------~~~~is~e------~~~~~~~~~~~ 74 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKE-------------------RAILFAYE------ESRAQLLRNAY 74 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-------------------CEEEEESS------SCHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCCEEECC------CCHHHHHHHHH
T ss_conf 689869849999918999999999999999987232-------------------44112126------79999999999
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHCCCEEEEECCCC---CCCHHH
Q ss_conf 60699999999999999999998199754334346888888898887999999998-51995889959999---999999
Q 000867 789 WLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVEL-VANPSIIFMDEPTS---GLDARA 864 (1247)
Q Consensus 789 ~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrkr~~ia~~l-~~~p~il~lDEpTs---gLD~~~ 864 (1247)
.... ... +. ...+.....+... ......+ ..-.+...+ -.+|++++.|..+. +.+...
T Consensus 75 ~~~~----~~~-------~~-~~~~~~~~~~~~~-----~~~~~~~-~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~ 136 (242)
T d1tf7a2 75 SWGM----DFE-------EM-ERQNLLKIVCAYP-----ESAGLED-HLQIIKSEINDFKPARIAIDSLSALARGVSNNA 136 (242)
T ss_dssp TTSC----CHH-------HH-HHTTSEEECCCCG-----GGSCHHH-HHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHH
T ss_pred HCCC----CHH-------HH-HHCCCEEEEEEEC-----CHHHHHH-HHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHH
T ss_conf 8299----869-------98-5458617997300-----0101799-999999999840885332204314304899999
Q ss_pred HHHHHHHHHHHH-HCCCEEEEEECCC
Q ss_conf 999999999987-3898899994169
Q 000867 865 AAIVMRTVRNTV-DTGRTVVCTIHQP 889 (1247)
Q Consensus 865 ~~~i~~~l~~~~-~~~~tvi~~~Hqp 889 (1247)
.......+...+ +.+.+++++.|..
T Consensus 137 ~~~~~~~l~~~~~~~~~~~i~~~~~~ 162 (242)
T d1tf7a2 137 FRQFVIGVTGYAKQEEITGLFTNTSD 162 (242)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 99999999999998698399998567
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.13 E-value=0.0021 Score=35.24 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999995999978999998868
Q 000867 717 VLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g 738 (1247)
.++.|.|++||||||+.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.13 E-value=0.0017 Score=35.85 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+|++|+|||||++.|+|..
T Consensus 11 V~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTST
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999997787
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.12 E-value=0.0019 Score=35.41 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=24.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEECC
Q ss_conf 99999599997899999886899-9972899999948
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISG 753 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~-~~~~~~G~i~~~g 753 (1247)
.++|+|++|||||||++.|..+. ..|..-|.|.-++
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 9999809999899999999999986798379998316
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.0013 Score=36.43 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=22.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77299999599997899999886899
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.|.++.|+||||+||+||.+.|..+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98099999999999999999998639
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.0019 Score=35.43 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
..|.||+|+|||||++.++..+.
T Consensus 4 v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 4 VFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988999719999999999999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.04 E-value=0.0017 Score=35.81 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|+|.+|+|||||+|.|.|+..
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999869999999858984
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.04 E-value=0.0013 Score=36.54 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=12.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+|+||+||||||+.+.|+-.
T Consensus 9 I~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 9 VFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999889999999999
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.01 E-value=0.0019 Score=35.49 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+|++|+|||||++.|.|.-
T Consensus 6 V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 6 IIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999988999999996799
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.00 E-value=0.0019 Score=35.44 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|+|||||||+||++.|+.+.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.99 E-value=0.0017 Score=35.79 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.++|+|++|+|||||+|.|.|+.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.97 E-value=0.0016 Score=36.00 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.++|+|++|+|||||++.|.+..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.97 E-value=0.0028 Score=34.40 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=14.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999599997899999886899
Q 000867 717 VLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
..+.|.|++||||||+.+.|+.+.
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 599998999999899999999972
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.96 E-value=0.0023 Score=34.94 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599997899999886899
Q 000867 719 TALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 719 ~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
+.|+|||||||+||.+.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0026 Score=34.62 Aligned_cols=20 Identities=40% Similarity=0.704 Sum_probs=10.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999978999998868
Q 000867 719 TALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 719 ~ai~G~sGsGKSTll~~l~g 738 (1247)
++++|.+|+|||||+|.|.|
T Consensus 8 I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99997999989999999958
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0024 Score=34.87 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 772999995999978999998868
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
..-.++|.||+|||||||++.|..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 832897438999989999999999
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.96 E-value=0.003 Score=34.22 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=16.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.++|+|.+|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.95 E-value=0.0018 Score=35.58 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|.||+||||||+.+.|+-+++
T Consensus 8 I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 8 ILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp EEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 99982899988999999999858
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.0026 Score=34.61 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=28.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 989837999996898969829989998223699988946898764312787655446688
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIG 60 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~~~i~yv~Q~d~l~~ 60 (1247)
+.+|-|++||||||+.+.|+-.+... +.+ .....+..++++|.+.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~----------~~~----~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQN----------EVD----YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG----------GSC----GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHH----------CCC----CCCCCEEEEECCCCCCC
T ss_conf 99998999787999999999996410----------134----57884399934653224
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.94 E-value=0.0023 Score=34.90 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.+.|+||+||||||+.+.|+.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.94 E-value=0.002 Score=35.30 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=25.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 898379999968989698299899982236999889468987643127876554
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQH 55 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~~~i~yv~Q~ 55 (1247)
.+++||+|||||-|.+.|++.+.. --+.+++.... ..|||..+
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEEE------ECCEEECC
T ss_conf 799899998899999999987389-----88986255114------11111044
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.0021 Score=35.13 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=25.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89957729999959999789999988689
Q 000867 711 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 711 ~~~~~G~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
|-++||+++.|.||+|+|||||..-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 89859979999958999999999999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.0012 Score=36.75 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|+||||+||+||++.|..+.+
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999899999999999997097
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.93 E-value=0.0016 Score=35.97 Aligned_cols=50 Identities=22% Similarity=0.225 Sum_probs=31.1
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEECCCCH-HHHHHH
Q ss_conf 99998519958899599999999999999999999873898-89999416996-899841
Q 000867 840 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVVCTIHQPSI-DIFESF 897 (1247)
Q Consensus 840 ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~-tvi~~~Hqp~~-~i~~~f 897 (1247)
+-.+|-.+|+.++++|-... ++. .+ ++.+ ..|+ -+++|+|-.+. +.++.+
T Consensus 228 l~~~lR~~pd~iivgEiR~~---ea~-~~---l~a~-~tGh~g~~tT~Ha~s~~~a~~Rl 279 (323)
T d1g6oa_ 228 LKSCLRMRPDRIILGELRSS---EAY-DF---YNVL-CSGHKGTLTTLHAGSSEEAFIRL 279 (323)
T ss_dssp HHHHTTSCCSEEEESCCCST---HHH-HH---HHHH-HTTCSCEEEEECCSSHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCH---HHH-HH---HHHH-HHCCCCEEEEECCCCHHHHHHHH
T ss_conf 99974349985457866746---599-99---9999-81698579987879999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.92 E-value=0.0027 Score=34.50 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999995999978999998868999
Q 000867 717 VLTALMGVSGAGKTTLMDVLAGRKT 741 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g~~~ 741 (1247)
.++.|.||+||||||+.+.|+....
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.91 E-value=0.0024 Score=34.86 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.++++|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.003 Score=34.23 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999599997899999886899
Q 000867 717 VLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
..+.|+||||+||+||++.|..+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.90 E-value=0.0019 Score=35.52 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+||+||||||+.+.|+..+
T Consensus 11 I~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 11 IFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999985
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.88 E-value=0.0013 Score=36.51 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
+.+|.|++||||||+.+.|+.++.
T Consensus 5 iI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999989999998999999999728
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.87 E-value=0.0024 Score=34.87 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|+|||||||+|+++.|+-+.+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.86 E-value=0.0024 Score=34.84 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|+|.+|+|||||+|+|.|...
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999978999999958886
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.85 E-value=0.0017 Score=35.84 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+|++++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.82 E-value=0.0019 Score=35.47 Aligned_cols=24 Identities=38% Similarity=0.303 Sum_probs=20.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
+.+|-||+|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.81 E-value=0.0035 Score=33.78 Aligned_cols=19 Identities=53% Similarity=0.732 Sum_probs=9.5
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9837999996898969829
Q 000867 3 LLLGPPCSGKTTLLLALAG 21 (1247)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G 21 (1247)
+|+||+||||||..+.|+-
T Consensus 7 il~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 7 VLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9989999988999999999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.80 E-value=0.002 Score=35.28 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+||+||||||+.+.|+-.+
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.0025 Score=34.74 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.++.||+||||||+.+.|+-++.
T Consensus 5 I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999999999999999969
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.78 E-value=0.0024 Score=34.86 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.77 E-value=0.0031 Score=34.11 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999789999988689
Q 000867 719 TALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 719 ~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+.|+|||||||+||.+.|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.0031 Score=34.13 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
.+.|.||+|+|||||++.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889997199999999999
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.77 E-value=0.0017 Score=35.74 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
-+||+|++++|||||+|.|+|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.72 E-value=0.0026 Score=34.63 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=19.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
+.+|.|++||||||+.+.|+-++.
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989999898999999999998
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.70 E-value=0.0038 Score=33.55 Aligned_cols=38 Identities=24% Similarity=0.454 Sum_probs=26.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC-CCCCEEEEEEEEC
Q ss_conf 7729999959999789999988689-9997289999994
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGNITIS 752 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g~-~~~~~~~G~i~~~ 752 (1247)
..-.++|.||+|+|||||++.|... ...|..-|-+.+|
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 815986117998889999999999876368751344346
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.0029 Score=34.28 Aligned_cols=25 Identities=40% Similarity=0.759 Sum_probs=22.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7299999599997899999886899
Q 000867 716 GVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 716 G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
|=.++++|++++|||||++.|.|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.69 E-value=0.0033 Score=33.92 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+|++|+|||||++.|+|..
T Consensus 8 I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 8 VAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999996888
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.68 E-value=0.0035 Score=33.76 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999959999789999988689
Q 000867 717 VLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
..+.|+||+||||||+-+.|+..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48999899999889999999999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.68 E-value=0.0026 Score=34.54 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+||+||||||..+.|+-.+
T Consensus 4 I~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 4 VFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997999999899999999986
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.65 E-value=0.0027 Score=34.44 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=11.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978999998868
Q 000867 718 LTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g 738 (1247)
+++|+|++|+|||||++.|.+
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999967
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.002 Score=35.30 Aligned_cols=25 Identities=44% Similarity=0.501 Sum_probs=22.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7729999959999789999988689
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
.|-.+.++|++||||||+-+.|+.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9969998899999999999999999
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.63 E-value=0.034 Score=27.50 Aligned_cols=35 Identities=31% Similarity=0.304 Sum_probs=27.3
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 011417899577299999599997899999886899
Q 000867 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 705 iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.+|.....+ .|.-+.|+|+||+|||||...|..+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 178999999-99999998189999899999999859
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.63 E-value=0.014 Score=29.95 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+++|++|+|||||++.|.+...
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHCCCCC
T ss_conf 99999999899999999808998
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.62 E-value=0.0029 Score=34.30 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=19.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 772999995999978999998868
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
.-+++.++|++||||||+.+-++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.0022 Score=35.08 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999599997899999886899
Q 000867 717 VLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
-.++|+|++++|||||+|.|.+..
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.59 E-value=0.0031 Score=34.10 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998799999999987
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.57 E-value=0.0036 Score=33.70 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=22.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57729999959999789999988689
Q 000867 714 RPGVLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 714 ~~G~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
++|-.+.|+||+||||||.-+.|+.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.56 E-value=0.0039 Score=33.44 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+++|.+++|||||+|.|.|..
T Consensus 8 I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999799998999999995898
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.56 E-value=0.0048 Score=32.87 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7299999599997899999886899
Q 000867 716 GVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 716 G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
-..+.|+||+||||||+-+.|+...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.54 E-value=0.0026 Score=34.55 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599997899999886899
Q 000867 719 TALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 719 ~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
+||+|++++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.53 E-value=0.0042 Score=33.26 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=13.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999789999988689
Q 000867 719 TALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 719 ~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+||+|+++||||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.52 E-value=0.0022 Score=35.07 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
..|.||+|+|||||++.|.....
T Consensus 57 IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 57 LGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 97438999989999999999997
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.49 E-value=0.003 Score=34.22 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=11.2
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 98379999968989698299
Q 000867 3 LLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.|+||+||||||+.+.|+-.
T Consensus 12 ~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 12 FVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp EEEECTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 99899999879999999998
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.48 E-value=0.0041 Score=33.35 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+|++|+|||||++.+.+..
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996598
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.46 E-value=0.0052 Score=32.68 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999959999789999988689
Q 000867 717 VLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
..++|.|++||||||+.+.|+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998989999999999
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.45 E-value=0.0039 Score=33.48 Aligned_cols=23 Identities=48% Similarity=0.550 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|+|++||||||+.+.|+-.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999988999999999839
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.44 E-value=0.0035 Score=33.74 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
..|.|+|||||||+.+.|+-++.
T Consensus 9 I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 9 IFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889999999999999999986
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.43 E-value=0.0043 Score=33.17 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+++|++||||||+.+.|+-++
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999994
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.41 E-value=0.004 Score=33.40 Aligned_cols=22 Identities=59% Similarity=0.841 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999799999999998
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.40 E-value=0.0045 Score=33.09 Aligned_cols=22 Identities=45% Similarity=0.517 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+++|++|+|||||++.|.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.39 E-value=0.0046 Score=33.03 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+||+||||||+.+.|+-++
T Consensus 9 IiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 9 AAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998799999999997
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.35 E-value=0.004 Score=33.38 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+++|.|||||||+.+.|+..+
T Consensus 5 i~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999999999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.0034 Score=33.82 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
++||.|++||||||+-+.|...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHH
T ss_conf 9999689999876899999999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.33 E-value=0.005 Score=32.79 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.+.|+||+||||||+.+.|+.+.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.32 E-value=0.0041 Score=33.33 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
++||.|++||||||+-+.|+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978799999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.31 E-value=0.0039 Score=33.49 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+||+||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998799999899999999986
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.30 E-value=0.0067 Score=31.96 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57729999959999789999988689
Q 000867 714 RPGVLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 714 ~~G~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
.|+-++.+.||+||||||++.++...
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 41054898767877744779998666
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.29 E-value=0.0064 Score=32.08 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999959999789999988689
Q 000867 717 VLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
.+++++|.+||||||+.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.29 E-value=0.0048 Score=32.91 Aligned_cols=22 Identities=32% Similarity=0.211 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+|++.+|||||++.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.28 E-value=0.0039 Score=33.44 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+++|++|+|||||++.|.+...
T Consensus 16 I~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 16 LVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999898999999967887
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.0058 Score=32.38 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978999998868999
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRKT 741 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~~ 741 (1247)
.+.|+||+||||||+-+.|+.+..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.27 E-value=0.0055 Score=32.54 Aligned_cols=20 Identities=45% Similarity=0.566 Sum_probs=12.0
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 98379999968989698299
Q 000867 3 LLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~ 22 (1247)
+++|.+|+|||||++.+.+.
T Consensus 9 ~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 9 LILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHCC
T ss_conf 99999998999999999679
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.25 E-value=0.0052 Score=32.65 Aligned_cols=23 Identities=43% Similarity=0.561 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+++|++||||||+.+.|+-++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.25 E-value=0.0066 Score=31.99 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=18.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9898379999968989698299
Q 000867 1 MTLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~ 22 (1247)
+.+++|++||||||+.+-++-.
T Consensus 16 liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 16 VVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999899999999976
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.24 E-value=0.0035 Score=33.79 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+|+|++.||||||++.|++.
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999969985499999999823
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.23 E-value=0.0049 Score=32.81 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=16.0
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 983799999689896982998
Q 000867 3 LLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
+|+||+||||||+.+.|+-++
T Consensus 6 vl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 6 VLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 998999999899999999996
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.22 E-value=0.007 Score=31.86 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
.+.|+||+||||||.-+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.20 E-value=0.007 Score=31.86 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|-||+||||||..+.|+-.+.
T Consensus 6 IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99789998798999999999969
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.0067 Score=31.98 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=30.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 9898379999968989698299899982236999889468987643127876554466888
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGE 61 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~~~i~yv~Q~d~l~~~ 61 (1247)
+.+|.|++||||||+.+.|...+... .....+..+++++.+.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH-----------------CCCCCEEEEEEEEEECCC
T ss_conf 99996899998768999999997304-----------------689965999521568984
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.17 E-value=0.0052 Score=32.70 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.++|.||+||||||.-+.|+...
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.17 E-value=0.0044 Score=33.12 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
++.++|++|+|||||++.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.17 E-value=0.0058 Score=32.37 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599997899999886899
Q 000867 719 TALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 719 ~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
+.+.||+|+||||+.++++...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 8987999973889999998503
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.15 E-value=0.0067 Score=31.97 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599997899999886899
Q 000867 719 TALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 719 ~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
+.|+|++||||||+.+.|+.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.14 E-value=0.0039 Score=33.47 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978999998868999
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRKT 741 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~~ 741 (1247)
.+.+.||+|+||||+.++++....
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.14 E-value=0.0074 Score=31.68 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77299999599997899999886899
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.+..+.|+||+||||||+-+.|+.+.
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 78289998999998799999999986
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.13 E-value=0.0061 Score=32.21 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=20.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77299999599997899999886899
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
|+.-+.++||+|+|||.|.++|+...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 98669998999988889999986213
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.12 E-value=0.0068 Score=31.91 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
+++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.12 E-value=0.0063 Score=32.15 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999789999988689
Q 000867 719 TALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 719 ~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+.+.||+|+||||+.++++..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999789997487999999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.10 E-value=0.0078 Score=31.54 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
.+.|+||+||||||+-+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999989999999998
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.08 E-value=0.0057 Score=32.39 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+|++|+|||||++.|.+..
T Consensus 3 V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 3 VLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999998099
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.08 E-value=0.0049 Score=32.85 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.07 E-value=0.0039 Score=33.44 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|+|++++|||||+|.|.|...
T Consensus 19 I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 19 VAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99988999989999999858985
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.07 E-value=0.0082 Score=31.42 Aligned_cols=23 Identities=39% Similarity=0.385 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|+|++.+|||||++.|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99993458849999999970344
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.06 E-value=0.0066 Score=32.03 Aligned_cols=31 Identities=32% Similarity=0.386 Sum_probs=24.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 898379999968989698299899982236999889
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNG 37 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G 37 (1247)
.++.||+||||||+.++|++++.. +-+.+|+
T Consensus 35 ilL~GpPGtGKT~la~~la~~~~~-----~~~~i~~ 65 (273)
T d1gvnb_ 35 FLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 65 (273)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHC-----CEEEEEC
T ss_conf 998897998899999999998651-----5489832
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.04 E-value=0.017 Score=29.33 Aligned_cols=36 Identities=28% Similarity=0.219 Sum_probs=26.9
Q ss_pred CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 1011417899577299999599997899999886899
Q 000867 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 704 ~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
..+|.. ...-.|.-+.++|+||+||||+...|..+.
T Consensus 3 ~~lH~~-~v~~~g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 3 RSMHGV-LVDIYGLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEEEE-EEEETTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CEEEEE-EEEECCEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 328999-999999999998089999899999999859
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.04 E-value=0.0094 Score=31.04 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=28.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 577299999599997899999886899997289999994811
Q 000867 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 714 ~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~ 755 (1247)
+.|-++.+.|.|||||||+.+.|..+.......-.+.++|-.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 63 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 998699998999999899999999887774275089975367
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.02 E-value=0.0097 Score=30.93 Aligned_cols=29 Identities=34% Similarity=0.507 Sum_probs=25.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 78995772999995999978999998868
Q 000867 710 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 710 s~~~~~G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
.|-+++|+++.|.||+|+|||||..-++.
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79986996999983899988999999999
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.98 E-value=0.0074 Score=31.67 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+++||||+|||.|.++|+....
T Consensus 52 iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 52 ILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99989999888899999862132
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.98 E-value=0.0081 Score=31.44 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.+.++|++||||||+-+.|+.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.97 E-value=0.0089 Score=31.19 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.+.|+||+||||||+-+.|+.+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.95 E-value=0.0047 Score=32.93 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
..|.||+|+|||||++.|...+
T Consensus 54 igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 54 VGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8611799888999999999987
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.0063 Score=32.14 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|.||+||||+|+-+.|+-++.
T Consensus 6 I~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 6 ITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99779998898999999999969
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.94 E-value=0.0089 Score=31.18 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=13.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999668
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.92 E-value=0.006 Score=32.29 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
+++|+|++|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.90 E-value=0.0059 Score=32.32 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|.|++||||||+.+.|+.++.
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989899898999999999998
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.032 Score=27.60 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.85 E-value=0.0049 Score=32.81 Aligned_cols=22 Identities=45% Similarity=0.572 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599997899999886899
Q 000867 719 TALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 719 ~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
+.+.||+|.||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988979987888999999984
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.85 E-value=0.0064 Score=32.09 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
+++++|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.83 E-value=0.0055 Score=32.51 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
-+.+.||+|+|||++.+++++..
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.79 E-value=0.0072 Score=31.76 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=25.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 78995772999995999978999998868
Q 000867 710 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 710 s~~~~~G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
.|-+++|+++.|.|++|+|||++..-++-
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 79862885999991799998999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.0029 Score=34.26 Aligned_cols=23 Identities=39% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
..+.|+|||||||+.+.|+-++.
T Consensus 22 I~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 22 VWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889999999999999999997
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.73 E-value=0.0089 Score=31.20 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=21.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7729999959999789999988689
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
|-.-+.+.||+|+|||++.++++..
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9807998896999889999998620
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.72 E-value=0.015 Score=29.66 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=23.8
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 7899577299999599997899999886
Q 000867 710 SGAFRPGVLTALMGVSGAGKTTLMDVLA 737 (1247)
Q Consensus 710 s~~~~~G~~~ai~G~sGsGKSTll~~l~ 737 (1247)
.|-+++|+++.|.||+|+|||||..-++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.71 E-value=0.0089 Score=31.17 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+++|.+|||||||++.|.+..
T Consensus 18 I~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 18 VIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996688
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.67 E-value=0.0046 Score=32.99 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=19.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
+.+|.|+|||||||+.+.|.....
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989997809999999999971
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.66 E-value=0.011 Score=30.71 Aligned_cols=19 Identities=32% Similarity=0.268 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983799999689896982
Q 000867 2 TLLLGPPCSGKTTLLLALA 20 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~ 20 (1247)
.+|.|++||||||+.+.|.
T Consensus 6 IgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 6 IGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998988778999999999
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.66 E-value=0.012 Score=30.37 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+|+|-|-+|||||+|+|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 768899999899999999788
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.65 E-value=0.011 Score=30.56 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.+.|+||+||||||.-+.|+.+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.64 E-value=0.0099 Score=30.90 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=21.4
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 957729999959999789999988689
Q 000867 713 FRPGVLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 713 ~~~G~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++. .+||+|+..+|||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.64 E-value=0.011 Score=30.61 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995999978999998868999
Q 000867 719 TALMGVSGAGKTTLMDVLAGRKT 741 (1247)
Q Consensus 719 ~ai~G~sGsGKSTll~~l~g~~~ 741 (1247)
+.++|++||||||+-+.|+.+..
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.01 Score=30.75 Aligned_cols=23 Identities=48% Similarity=0.816 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.++.||+|+|||++.++|+.+..
T Consensus 48 iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCCCHHHHHHHHHCC
T ss_conf 78668998882289999999829
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.60 E-value=0.0097 Score=30.94 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.++++|...||||||+|+|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.59 E-value=0.013 Score=30.13 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.+.|+||+||||||+-+.|+.+.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.56 E-value=0.013 Score=30.12 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|+|+..+|||||++.|+|...
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 99997248869999999970412
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.55 E-value=0.0021 Score=35.19 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+++|++++|||||++.|+|+.
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.54 E-value=0.014 Score=30.02 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.+.|+||+||||||+-+.|+...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.53 E-value=0.0062 Score=32.18 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|-|+.||||||+++.|+..++
T Consensus 12 I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 12 VLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99889999888999999998707
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.50 E-value=0.014 Score=29.97 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
.+.|.|++||||||+.+.|+.+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999898998989999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.41 E-value=0.011 Score=30.63 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999995999978999998868999
Q 000867 717 VLTALMGVSGAGKTTLMDVLAGRKT 741 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g~~~ 741 (1247)
-.++|-|+.||||||+++.|+....
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.36 E-value=0.016 Score=29.61 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.35 E-value=0.01 Score=30.75 Aligned_cols=60 Identities=17% Similarity=0.095 Sum_probs=34.2
Q ss_pred CCCEEEEEECCCCCC---CHHHHHHHHHHHHHHHHHCCCEEEEEECCC---------CHHHHHHCCCEEEEC
Q ss_conf 597086662798560---379999999999999782398899995389---------825995201378856
Q 000867 161 GPALALFMDEISTGL---DSSTTFQIVNSIRQNIHILNGTAVISLLQP---------APETYDLFDDIILLS 220 (1247)
Q Consensus 161 ~~~~IllLDEpTSgL---Ds~s~~~I~~~L~~~~~~~~~t~ii~i~q~---------~~e~~~lfD~I~iL~ 220 (1247)
.++++++.|..+.-+ +.......+..+.+.++..+.+++++.|.+ .......+|.|+.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred CCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 088533220431430489999999999999999998698399998567512554457764046421699999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.33 E-value=0.016 Score=29.58 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=21.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77299999599997899999886899
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.+..+.|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.32 E-value=0.0085 Score=31.30 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999599997899999886899
Q 000867 717 VLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.-+.+.||+|+|||++.++++...
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 646876699888308999999874
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.32 E-value=0.016 Score=29.51 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
.+.|+||+||||||+.+.|+.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.31 E-value=0.017 Score=29.32 Aligned_cols=23 Identities=43% Similarity=0.627 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.++.||+|+||||+.++|+.+..
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99987999988899999999987
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.29 E-value=0.0084 Score=31.35 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=22.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577299999599997899999886899
Q 000867 714 RPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 714 ~~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
++..-+.+.||+|+|||+|.+++++..
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 988757887899876304778878771
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.28 E-value=0.018 Score=29.27 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+|.-+||||||+|+|+|.-
T Consensus 27 ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCHHHHHHHHHCCC
T ss_conf 9998189897999999996899
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.28 E-value=0.013 Score=30.08 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.25 E-value=0.013 Score=30.07 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999789999988689
Q 000867 719 TALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 719 ~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+.+.||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.24 E-value=0.014 Score=29.91 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
+++++|++|+|||||++.+.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.22 E-value=0.012 Score=30.28 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.++++|...||||||+|+|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.19 E-value=0.014 Score=29.94 Aligned_cols=21 Identities=38% Similarity=0.240 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+|+||+++|||||++.|++.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999947898499999999998
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.19 E-value=0.016 Score=29.53 Aligned_cols=23 Identities=57% Similarity=0.684 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.++.||+|+||||+.++++.++.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99978999748799999999987
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.18 E-value=0.014 Score=29.87 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.14 E-value=0.01 Score=30.80 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=24.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8995772999995999978999998868
Q 000867 711 GAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 711 ~~~~~G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
|-+++|+.+.|.|++|+|||++..-++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9976897999988998878899999999
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.12 E-value=0.028 Score=27.96 Aligned_cols=35 Identities=31% Similarity=0.212 Sum_probs=27.2
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 011417899577299999599997899999886899
Q 000867 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 705 iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
-+|. ++..-.|.-+.|+|+||+||||+...|..+.
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~g 39 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKRG 39 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 4889-9999999999998089999999999999849
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.08 E-value=0.02 Score=28.99 Aligned_cols=34 Identities=38% Similarity=0.683 Sum_probs=26.7
Q ss_pred CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 1011417899577299999599997899999886899
Q 000867 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 704 ~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.+|+.++. |=-.++|+||.++|||||||.|.|..
T Consensus 23 ~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 23 KILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99970799---87999988999997999999980998
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.07 E-value=0.014 Score=29.89 Aligned_cols=22 Identities=55% Similarity=0.588 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+++|++|+|||||++.+.+..
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989999999996487
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.05 E-value=0.018 Score=29.19 Aligned_cols=19 Identities=37% Similarity=0.277 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983799999689896982
Q 000867 2 TLLLGPPCSGKTTLLLALA 20 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~ 20 (1247)
.+|.|+.||||||+.+.|.
T Consensus 5 IgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9988888788999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.05 E-value=0.016 Score=29.53 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+++|++|+|||||++.+.+..
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999969899999997098
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.04 E-value=0.019 Score=29.05 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+|.-+||||||+|+|+|.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9997689897999999996898
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.02 E-value=0.016 Score=29.53 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=21.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77299999599997899999886899
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
+...+.|.||+|+||||+++.++...
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88816888989998999999999997
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.01 E-value=0.02 Score=28.95 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=11.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 772999995999978999998868
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
.|-+++|-|+.||||||+.+.|..
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 805999989988899999999999
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.97 E-value=0.021 Score=28.80 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=14.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599997899999886
Q 000867 718 LTALMGVSGAGKTTLMDVLA 737 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~ 737 (1247)
++||-|++|||||||-+.|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99837998788999999999
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.92 E-value=0.017 Score=29.40 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999789999988689
Q 000867 719 TALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 719 ~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+.+.||+|+||||+.++++..
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHH
T ss_conf 999889998705469999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.88 E-value=0.0072 Score=31.78 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
.+||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.87 E-value=0.023 Score=28.60 Aligned_cols=23 Identities=48% Similarity=0.692 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.++.||+|+|||++.++|+.+..
T Consensus 43 vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99889699988999999862010
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.84 E-value=0.017 Score=29.43 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=9.8
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9837999996898969829
Q 000867 3 LLLGPPCSGKTTLLLALAG 21 (1247)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G 21 (1247)
.|+|-|.+|||||+++|++
T Consensus 14 GivG~Pn~GKSTlfnalT~ 32 (296)
T d1ni3a1 14 GIVGMPNVGKSTFFRAITK 32 (296)
T ss_dssp EEEECSSSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHC
T ss_conf 9978999989999999977
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.82 E-value=0.023 Score=28.57 Aligned_cols=20 Identities=15% Similarity=0.401 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996898969829
Q 000867 2 TLLLGPPCSGKTTLLLALAG 21 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1247)
.+++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.81 E-value=0.021 Score=28.85 Aligned_cols=24 Identities=50% Similarity=0.731 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 898379999968989698299899
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDS 25 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~ 25 (1247)
.++.||||+||||+.++|+.+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 898799997388999999850388
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.81 E-value=0.014 Score=29.94 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
++||.|++||||||+.+.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.80 E-value=0.016 Score=29.54 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
++|.||+|+|||||++.++.+..
T Consensus 32 i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 32 TLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99986999829999999999779
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.77 E-value=0.014 Score=29.85 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.76 E-value=0.016 Score=29.63 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|++|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.018 Score=29.23 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997998999999999809
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.02 Score=28.99 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.69 E-value=0.022 Score=28.70 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
+++++|++|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.69 E-value=0.021 Score=28.85 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|.+|+|||||++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999719
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.65 E-value=0.027 Score=28.06 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.63 E-value=0.028 Score=28.04 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=16.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 72999995999978999998868
Q 000867 716 GVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 716 G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
+..++++||+|+||||.+-=|+.
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 77999989999988999999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.63 E-value=0.016 Score=29.47 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.62 E-value=0.018 Score=29.25 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
++.|.||+||||||++.-++....
T Consensus 25 v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999995899999999999999998
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.61 E-value=0.028 Score=27.99 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+++|.+|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.60 E-value=0.019 Score=29.05 Aligned_cols=19 Identities=21% Similarity=0.032 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983799999689896982
Q 000867 2 TLLLGPPCSGKTTLLLALA 20 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~ 20 (1247)
.+|+||.|||||||...|+
T Consensus 9 i~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999589899899999999
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.60 E-value=0.02 Score=28.88 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999789999988689
Q 000867 719 TALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 719 ~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+.+.||+|+||||+.++++..
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999889987755899999998
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.57 E-value=0.019 Score=29.12 Aligned_cols=21 Identities=52% Similarity=0.472 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+|+||.|||||||...|+..
T Consensus 5 v~iiGh~~~GKTtL~e~ll~~ 25 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALLYK 25 (267)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999948898099999999997
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.028 Score=28.01 Aligned_cols=20 Identities=40% Similarity=0.414 Sum_probs=16.7
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 98983799999689896982
Q 000867 1 MTLLLGPPCSGKTTLLLALA 20 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~ 20 (1247)
+.+|.|+.||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.52 E-value=0.0037 Score=33.63 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
+++++|++++|||||++.|.|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.48 E-value=0.021 Score=28.78 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.41 E-value=0.024 Score=28.44 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=0.02 Score=28.96 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
-+|-|+.||||||+++.|+..++
T Consensus 5 I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 5 ISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99987888779999999999973
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.39 E-value=0.0097 Score=30.96 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.++.||+|+||||+++.+++.++
T Consensus 31 vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 31 VLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 89988998529999999987379
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.38 E-value=0.019 Score=29.09 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=29.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99588995999999999999999999998738988999941699
Q 000867 847 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 847 ~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~ 890 (1247)
+.+++++||.-. |...+...+.+.+... ...+.+|++++.+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~-~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSC
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCC-CCCCCCEEEECCCC
T ss_conf 724999424333-4543111221002213-56643000102111
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.028 Score=28.01 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.36 E-value=0.023 Score=28.59 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=8.8
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 983799999689896982
Q 000867 3 LLLGPPCSGKTTLLLALA 20 (1247)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~ 20 (1247)
+|+|++|+|||||++.+.
T Consensus 8 ~liG~~~vGKTsLl~~~~ 25 (167)
T d1xtqa1 8 AILGYRSVGKSSLTIQFV 25 (167)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999989929899999997
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.074 Score=25.30 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|++|+|||||++.+.+.
T Consensus 8 i~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999719
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.32 E-value=0.022 Score=28.73 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=31.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 98983799999689896982998999822369998894689876431278765544668889989999999
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHDVHIGEMTVRETLAFS 71 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~~~i~yv~Q~d~l~~~LTVrEnL~f~ 71 (1247)
+..|-|++|||||||...|.-.+... . .....++.++.+|.. +|-.|-...+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---~-------------~~~~~v~~iS~DdfY---~t~~~r~~L~ 80 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---Y-------------GGEKSIGYASIDDFY---LTHEDQLKLN 80 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---H-------------GGGSCEEEEEGGGGB---CCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---H-------------CCCCCEEEECCCCCC---CCHHHHHHHH
T ss_conf 99837998788999999999999987---2-------------778606763567777---8889999985
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.28 E-value=0.02 Score=28.98 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|++|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.26 E-value=0.024 Score=28.46 Aligned_cols=23 Identities=52% Similarity=0.743 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.++.||+|+||||+.++++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.26 E-value=0.029 Score=27.92 Aligned_cols=22 Identities=50% Similarity=0.865 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.++.||+|+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.015 Score=29.78 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=22.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 72999995999978999998868999
Q 000867 716 GVLTALMGVSGAGKTTLMDVLAGRKT 741 (1247)
Q Consensus 716 G~~~ai~G~sGsGKSTll~~l~g~~~ 741 (1247)
+..++|-|+.||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.22 E-value=0.03 Score=27.78 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.03 Score=27.78 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
+++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.21 E-value=0.016 Score=29.59 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
.+.+.||+|+||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8996789998999999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.21 E-value=0.026 Score=28.18 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978999998868
Q 000867 718 LTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g 738 (1247)
+++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.20 E-value=0.036 Score=27.31 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989929999999997286
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.029 Score=27.92 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.19 E-value=0.02 Score=28.98 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=15.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978999998868
Q 000867 718 LTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g 738 (1247)
+++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999988733
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.15 E-value=0.037 Score=27.23 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|.||+|+||||+++.++..+.
T Consensus 46 lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 46 ATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 68889899989999999999975
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.13 E-value=0.034 Score=27.47 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=13.2
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 983799999689896982998
Q 000867 3 LLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
+|-|+.||||||+++.|...+
T Consensus 6 viEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 6 VIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 998998887999999999999
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.13 E-value=0.039 Score=27.07 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|.+|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.13 E-value=0.039 Score=27.07 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7729999959999789999988689
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
|...+.++||+|+|||.|.+.|+..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7658999778750069999999863
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.12 E-value=0.021 Score=28.75 Aligned_cols=23 Identities=43% Similarity=0.670 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.++.||+|+|||++.++++++..
T Consensus 44 iLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 44 VLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp EEEBCCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 78878998763047788787718
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=0.029 Score=27.90 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+++|.+|+|||||++.+.+..
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989939999999997199
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.09 E-value=0.026 Score=28.17 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=30.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 999995999978999998868999972899999948117843334338996268
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQN 771 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~ 771 (1247)
=+.++||||+|||-|.+.||+...- + -+..+..... ..|||-.|
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-P---Fv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-P---FIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-C---EEEEEGGGGC----------CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-C---EEEEECCEEE------ECCEEECC
T ss_conf 4799899998899999999987389-8---8986255114------11111044
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.029 Score=27.93 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=10.4
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9837999996898969829
Q 000867 3 LLLGPPCSGKTTLLLALAG 21 (1247)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G 21 (1247)
+++|.+|+|||||++.+.+
T Consensus 11 ~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 11 LIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999899088999999971
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.027 Score=28.06 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996898969829
Q 000867 2 TLLLGPPCSGKTTLLLALAG 21 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1247)
.+++|.+|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999799999999973
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.022 Score=28.64 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|++|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.04 E-value=0.059 Score=25.96 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999959999789999988689
Q 000867 717 VLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
-.+||+|-+.+|||||+++|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 37999789999899999999778
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.01 E-value=0.025 Score=28.33 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+++||+|+||||++-=|+.+..
T Consensus 9 i~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 9 VLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999988999999999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.97 E-value=0.024 Score=28.48 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.97 E-value=0.16 Score=23.14 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=32.7
Q ss_pred CCCEEEEEECCCCCCCH----HHHHHHHHHHHHHHHHCCCEEEEEECCCCH--------HHHHHCCCEEEEC
Q ss_conf 59708666279856037----999999999999978239889999538982--------5995201378856
Q 000867 161 GPALALFMDEISTGLDS----STTFQIVNSIRQNIHILNGTAVISLLQPAP--------ETYDLFDDIILLS 220 (1247)
Q Consensus 161 ~~~~IllLDEpTSgLDs----~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~--------e~~~lfD~I~iL~ 220 (1247)
.++++++.|..+.-.+. ....++...+....+..+.+++++.++... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 312220020788998760572678999999999998639716884210255422246762335362999988
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.96 E-value=0.02 Score=28.89 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.93 E-value=0.045 Score=26.70 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=17.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 729999959999789999988689
Q 000867 716 GVLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 716 G~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
...++++||+|+||||.+-=|+.+
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 989999899999889999999999
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.92 E-value=0.037 Score=27.25 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.++.||+|+|||++.++++.+..
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 68766998883089999998748
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=92.90 E-value=0.023 Score=28.56 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=27.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 577299999599997899999886899997289999994811
Q 000867 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 714 ~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~ 755 (1247)
+.+..+.+.||+|+|||++.++|++...+ --+.+|+-+
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~~----~~i~in~s~ 189 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCGG----KALNVNLPL 189 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCC----EEECCSSCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC----CEEEEECCC
T ss_conf 97676999899998889999999998599----789997742
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.88 E-value=0.033 Score=27.57 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
+.|+|-|-+|||||+++|++-
T Consensus 5 ~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 5 CGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 888899999889999999779
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.88 E-value=0.027 Score=28.14 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978999998868
Q 000867 718 LTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g 738 (1247)
.+||.|+.||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.88 E-value=0.041 Score=26.98 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|.+|+|||||++-+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992989999999739
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.87 E-value=0.027 Score=28.06 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+++||+|+||||.+-=|+-++
T Consensus 14 i~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999999
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=92.84 E-value=0.025 Score=28.32 Aligned_cols=20 Identities=35% Similarity=0.308 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996898969829
Q 000867 2 TLLLGPPCSGKTTLLLALAG 21 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1247)
.+|+|+..+|||||++.|++
T Consensus 6 i~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99995889809999999999
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.83 E-value=0.031 Score=27.72 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
.+||+|.+.+|||||+|+|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.82 E-value=0.031 Score=27.71 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.++.|+||+||||+...|..+-
T Consensus 18 vli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 18 VLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9998189999899999999859
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.81 E-value=0.036 Score=27.29 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8995772999995999978999998868
Q 000867 711 GAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 711 ~~~~~G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
..+..|+..+|.|++|+|||+|+..++.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5645787556867999887899999999
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.81 E-value=0.053 Score=26.22 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=24.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8995772999995999978999998868
Q 000867 711 GAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 711 ~~~~~G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
|-+++|.++.|.||+|+|||||.--++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.81 E-value=0.033 Score=27.52 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.79 E-value=0.039 Score=27.12 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
++.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.79 E-value=0.027 Score=28.09 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.042 Score=26.91 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+|+|.+|+|||||++.+.+.
T Consensus 8 ivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 8 CVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999749
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.78 E-value=0.021 Score=28.84 Aligned_cols=23 Identities=43% Similarity=0.462 Sum_probs=19.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 98983799999689896982998
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
+++|-|.-|||||||++-|+...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.75 E-value=0.024 Score=28.40 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++|+|++|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.74 E-value=0.03 Score=27.85 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.73 E-value=0.03 Score=27.79 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=10.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978999998868
Q 000867 718 LTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g 738 (1247)
.++++||+|+||||.+-=|+.
T Consensus 11 vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 11 VILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999998999999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.72 E-value=0.042 Score=26.90 Aligned_cols=23 Identities=39% Similarity=0.335 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.++-|+-||||||+.+.|.-++.
T Consensus 6 I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 6 ILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989988869999999999997
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.71 E-value=0.022 Score=28.63 Aligned_cols=22 Identities=41% Similarity=0.445 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+++|++|+|||||++.+.+..
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~~ 41 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIGE 41 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCSE
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999998899998873387
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.70 E-value=0.026 Score=28.17 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
+..|+||-++|||||||.|.|...
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999889999979999999809987
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.69 E-value=0.041 Score=26.92 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
-+||+|.-.+|||||++.|.|.
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999934588499999999703
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.68 E-value=0.027 Score=28.14 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990889999999849
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.68 E-value=0.04 Score=27.00 Aligned_cols=23 Identities=52% Similarity=0.784 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.++.||+|+|||++.++|+.+..
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 88766898883599999998739
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.67 E-value=0.025 Score=28.29 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.65 E-value=0.041 Score=26.95 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+|+|.+|+|||||++.+.+..
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989938899999997199
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.60 E-value=0.031 Score=27.74 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.++.|+||+||||+...|..+-
T Consensus 17 vl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 17 VLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9998089999899999999859
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.55 E-value=0.026 Score=28.18 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=26.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC-C----CC--E-EEEEEEECCCC
Q ss_conf 299999599997899999886899-9----97--2-89999994811
Q 000867 717 VLTALMGVSGAGKTTLMDVLAGRK-T----GG--Y-ITGNITISGYP 755 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g~~-~----~~--~-~~G~i~~~g~~ 755 (1247)
-+++|+|++|+|||||++.+.+.. . +. . ..-.+.+||.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 51 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE 51 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEE
T ss_conf 38999998992989999999719888544754211310388317679
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.54 E-value=0.043 Score=26.80 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996898969829
Q 000867 2 TLLLGPPCSGKTTLLLALAG 21 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1247)
.+++|.+|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999099999999970
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.53 E-value=0.03 Score=27.80 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.53 E-value=0.033 Score=27.52 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=17.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 729999959999789999988689
Q 000867 716 GVLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 716 G~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
...++++||+|+||||.+-=|+.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.52 E-value=0.026 Score=28.20 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++-+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.51 E-value=0.025 Score=28.33 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994999999999709
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.51 E-value=0.049 Score=26.47 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+|+|.+|+|||||++-+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.48 E-value=0.027 Score=28.15 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=16.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 72999995999978999998868
Q 000867 716 GVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 716 G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
...++++||+|+||||.+-=|+.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 98999989999998999999999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.43 E-value=0.06 Score=25.91 Aligned_cols=23 Identities=39% Similarity=0.287 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+++||+|+||||.+-=|+.++.
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999988999999999999
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.42 E-value=0.032 Score=27.67 Aligned_cols=20 Identities=45% Similarity=0.589 Sum_probs=10.7
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 98379999968989698299
Q 000867 3 LLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~ 22 (1247)
+++|++|+|||||++.+.+.
T Consensus 16 vlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 16 LMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEETTSSHHHHHHHTTCC
T ss_pred EEECCCCCCHHHHHHHHHCC
T ss_conf 99999998789999998448
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.42 E-value=0.035 Score=27.35 Aligned_cols=19 Identities=42% Similarity=0.553 Sum_probs=9.4
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983799999689896982
Q 000867 2 TLLLGPPCSGKTTLLLALA 20 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~ 20 (1247)
++|+|++|||||++++.+.
T Consensus 53 ~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 53 LLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 8999079996899999999
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.41 E-value=0.031 Score=27.77 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.39 E-value=0.038 Score=27.19 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.35 E-value=0.046 Score=26.62 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+++||+|+||||++-=|+.++.
T Consensus 15 i~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp EEEECSCCC----HHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999998999999999999
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.048 Score=26.49 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=11.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996898969829
Q 000867 2 TLLLGPPCSGKTTLLLALAG 21 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1247)
.+|+|.+|+|||||++-+.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999799698999999973
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.34 E-value=0.023 Score=28.50 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.34 E-value=0.052 Score=26.31 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|-|.-||||||+++.|..++.
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989987899999999999998
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.33 E-value=0.036 Score=27.33 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
.+||.|+.||||||..+.|...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.033 Score=27.54 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++-+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.31 E-value=0.035 Score=27.38 Aligned_cols=22 Identities=55% Similarity=0.847 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++|-|.-||||||+++.|..+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999899878999999999999
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=92.31 E-value=0.038 Score=27.14 Aligned_cols=21 Identities=33% Similarity=0.282 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|++.+|||||++.|+..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.30 E-value=0.035 Score=27.37 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
..+.|.|||||||+.+.|.-++
T Consensus 27 IwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 27 IWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999887
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.27 E-value=0.031 Score=27.69 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=19.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 98983799999689896982998
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
++.|.||+||||||+..-++-..
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~~ 58 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVTC 58 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998389998899999999986
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.26 E-value=0.058 Score=25.98 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+++||+|+||||.+-=|+-++.
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999998999999999999
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.25 E-value=0.037 Score=27.20 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++||.++|||||+..|+..
T Consensus 6 i~viGHVd~GKTTL~~~Ll~~ 26 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLLMD 26 (224)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999944799999999999998
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.22 E-value=0.054 Score=26.17 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996898969829
Q 000867 2 TLLLGPPCSGKTTLLLALAG 21 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1247)
.+++|.+|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899588999999972
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.22 E-value=0.062 Score=25.82 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=23.8
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 95772999995999978999998868
Q 000867 713 FRPGVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 713 ~~~G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
.+||.++++-|+=||||||+.+.++.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79982999966877658899999876
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.14 E-value=0.046 Score=26.61 Aligned_cols=21 Identities=43% Similarity=0.767 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|.+|+|||||++-+.+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999993989999999829
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.13 E-value=0.051 Score=26.36 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.++.||+|+||||+.++++.++.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.10 E-value=0.032 Score=27.63 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
++.++|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999987899999984488
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.10 E-value=0.046 Score=26.61 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|.+|+|||||++-+.+.
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.07 E-value=0.047 Score=26.57 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=11.5
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983799999689896982
Q 000867 2 TLLLGPPCSGKTTLLLALA 20 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~ 20 (1247)
.+++|++|+|||||++.+.
T Consensus 9 i~vvG~~~vGKTsli~~~~ 27 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFK 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999929999999997
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.06 Score=25.87 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.01 E-value=0.048 Score=26.49 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|++|+|||||++-+...
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.98 E-value=0.042 Score=26.88 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
++.++|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.94 E-value=0.058 Score=26.00 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.94 E-value=0.05 Score=26.41 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++-+...
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.043 Score=26.81 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++-+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.064 Score=25.73 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|.+|+|||||++-+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999859
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.82 E-value=0.061 Score=25.85 Aligned_cols=19 Identities=42% Similarity=0.588 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983799999689896982
Q 000867 2 TLLLGPPCSGKTTLLLALA 20 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~ 20 (1247)
.+++|.+|+|||||++-+.
T Consensus 9 illlG~~~vGKTsll~~~~ 27 (221)
T d1azta2 9 LLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999899998899999895
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.82 E-value=0.056 Score=26.06 Aligned_cols=23 Identities=43% Similarity=0.755 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.++.||+|+||||+..+++.++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.77 E-value=0.035 Score=27.36 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978999998868
Q 000867 718 LTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g 738 (1247)
+++++|.+|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.73 E-value=0.054 Score=26.17 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|++|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.66 E-value=0.065 Score=25.68 Aligned_cols=18 Identities=50% Similarity=0.671 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 898379999968989698
Q 000867 2 TLLLGPPCSGKTTLLLAL 19 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L 19 (1247)
.+++|.+|+|||||++-+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999989999988
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.60 E-value=0.04 Score=27.05 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.59 E-value=0.033 Score=27.57 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|++|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.55 E-value=0.042 Score=26.85 Aligned_cols=21 Identities=43% Similarity=0.404 Sum_probs=17.6
Q ss_pred CEEEECCCCCCHHHHHHHHHC
Q ss_conf 989837999996898969829
Q 000867 1 MTLLLGPPCSGKTTLLLALAG 21 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G 21 (1247)
++.|.||+||||||+..-++-
T Consensus 38 ~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999985898988999999999
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.54 E-value=0.06 Score=25.90 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|.+|+|||||++-+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999709
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=91.54 E-value=0.029 Score=27.93 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=22.3
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9577299999599997899999886899
Q 000867 713 FRPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 713 ~~~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
-.|.-.+.+.||+|+|||.|.++|++..
T Consensus 120 ~~~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 120 RYASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3688638887799850889999999986
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=91.50 E-value=0.045 Score=26.71 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHH
Q ss_conf 89837999996898969
Q 000867 2 TLLLGPPCSGKTTLLLA 18 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~ 18 (1247)
.+|.|++||||||++--
T Consensus 17 ~lI~g~aGTGKTt~l~~ 33 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITN 33 (306)
T ss_dssp EEECCCTTSCHHHHHHH
T ss_pred EEEEEECCCCHHHHHHH
T ss_conf 89996288438999999
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.44 E-value=0.053 Score=26.22 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.43 E-value=0.063 Score=25.76 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599997899999886
Q 000867 718 LTALMGVSGAGKTTLMDVLA 737 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~ 737 (1247)
-+||+|+.|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.35 E-value=0.049 Score=26.43 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.35 E-value=0.06 Score=25.89 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.++.||+|+||||+..+++.++
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.33 E-value=0.044 Score=26.73 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+|.|+||+||||+...|..+
T Consensus 18 vli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 18 VLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999808999999999999984
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=91.32 E-value=0.053 Score=26.26 Aligned_cols=46 Identities=7% Similarity=0.018 Sum_probs=27.8
Q ss_pred CCCEEEEEECCCCCCCH--------HHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 59708666279856037--------9999999999999782398899995389825
Q 000867 161 GPALALFMDEISTGLDS--------STTFQIVNSIRQNIHILNGTAVISLLQPAPE 208 (1247)
Q Consensus 161 ~~~~IllLDEpTSgLDs--------~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e 208 (1247)
.+++++++|-. +-+++ .....+++.++..+...+. +++.++|+..+
T Consensus 146 ~~~~~vvID~l-~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i-~vi~~~q~~r~ 199 (277)
T d1cr2a_ 146 LGCDVIILDHI-SIVVSASGESDERKMIDNLMTKLKGFAKSTGV-VLVVICHLKNP 199 (277)
T ss_dssp TCCSEEEEEEE-EC----------CHHHHHHHHHHHHHHHHHCC-EEEEEEECC--
T ss_pred CCCCEEEECCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCEEECCCCCC
T ss_conf 67625997054-21203465443067789999999997650165-52031035632
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.31 E-value=0.072 Score=25.38 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
.+++|.+|+|||||++-+.+..
T Consensus 6 vvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999969999999997199
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.29 E-value=0.064 Score=25.71 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++-+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.26 E-value=0.066 Score=25.62 Aligned_cols=21 Identities=48% Similarity=0.634 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978999998868
Q 000867 718 LTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g 738 (1247)
-++|+|+.|+|||||...|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999994889809999999999
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=91.18 E-value=0.048 Score=26.52 Aligned_cols=16 Identities=38% Similarity=0.507 Sum_probs=11.5
Q ss_pred EEEECCCCCCHHHHHH
Q ss_conf 8983799999689896
Q 000867 2 TLLLGPPCSGKTTLLL 17 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~ 17 (1247)
++|.|++||||||.|-
T Consensus 27 ~lV~g~aGSGKTt~l~ 42 (318)
T d1pjra1 27 LLIMAGAGSGKTRVLT 42 (318)
T ss_dssp EEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCHHHHHH
T ss_conf 8999529866899999
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.18 E-value=0.042 Score=26.90 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=18.6
Q ss_pred EEECCCCCCHHHHHHHHHCCCC
Q ss_conf 9837999996898969829989
Q 000867 3 LLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+.||+|+||||+++.++..+.
T Consensus 50 ~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 50 GSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp ECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
T ss_conf 9678999899999999999987
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.11 E-value=0.057 Score=26.05 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=20.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 729999959999789999988689
Q 000867 716 GVLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 716 G~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
-=+++++|.+|+|||||++-+.+.
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 379999998997899999999719
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.06 E-value=0.068 Score=25.53 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978999998868
Q 000867 718 LTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g 738 (1247)
+++++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.068 Score=25.53 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978999998868
Q 000867 718 LTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g 738 (1247)
+++++|++|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=91.04 E-value=0.11 Score=24.23 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=22.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77299999599997899999886899
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.+-.++++|.+.+|||||+|.|.|+.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCC
T ss_conf 75278998667544355542542661
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.02 E-value=0.057 Score=26.04 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999959999789999988689
Q 000867 717 VLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
=++.++|.+|+|||||++-+.+.
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998995989999999709
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.99 E-value=0.07 Score=25.47 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++-+...
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.96 E-value=0.069 Score=25.50 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999995999978999998868
Q 000867 717 VLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g 738 (1247)
-++.++|.+|+|||||++-+..
T Consensus 7 ~KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 7799998999988999998950
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.89 E-value=0.07 Score=25.45 Aligned_cols=49 Identities=4% Similarity=0.069 Sum_probs=36.6
Q ss_pred HHCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 5199588995999999-999999999999998738988999941699689
Q 000867 845 VANPSIIFMDEPTSGL-DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 893 (1247)
Q Consensus 845 ~~~p~il~lDEpTsgL-D~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~~~i 893 (1247)
+.+.+++++|+.-.=. +......+..++......|+.+|+++..|..++
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHC
T ss_conf 76213010112655058657788999999987631663899548751001
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.83 E-value=0.066 Score=25.61 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+++||+|+|||.|.+.|+..+.
T Consensus 55 ~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 55 FLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHHCC
T ss_conf 99977875006999999986336
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=0.067 Score=25.60 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++|+|.+|+|||||++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.82 E-value=0.086 Score=24.89 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|.+|+|||||++-+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999995989999999729
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=0.093 Score=24.66 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|.+|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.73 E-value=0.046 Score=26.62 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999599997899999886
Q 000867 719 TALMGVSGAGKTTLMDVLA 737 (1247)
Q Consensus 719 ~ai~G~sGsGKSTll~~l~ 737 (1247)
++|+|.-++|||||++.|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHH
T ss_conf 9999527989999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.73 E-value=0.063 Score=25.74 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7729999959999789999988689
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
.|..++|-|+.||||||+.+.|..+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9878999899888799999999999
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.69 E-value=0.053 Score=26.22 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=11.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983799999689896982
Q 000867 2 TLLLGPPCSGKTTLLLALA 20 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~ 20 (1247)
.+|+||.|+|||||++.|+
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999688886999999999
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.67 E-value=0.058 Score=25.98 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=20.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
+|.|.|++|+|||++..-++-..-
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999991799998999999999998
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.57 E-value=0.089 Score=24.81 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=12.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
..|.||+|+|||-|+.+++.+.
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 7998889983999999999874
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.51 E-value=0.074 Score=25.31 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=18.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9898379999968989698299
Q 000867 1 MTLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~ 22 (1247)
++.|.|++|||||++..-++..
T Consensus 39 ~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 39 ITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889988788999999999
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.49 E-value=0.081 Score=25.07 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599997899999886
Q 000867 718 LTALMGVSGAGKTTLMDVLA 737 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~ 737 (1247)
++.++|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999899999899999884
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.47 E-value=0.11 Score=24.30 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=20.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 772999995999978999998868
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
|.=-++++|..++|||||++.|..
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 971999994789849999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.44 E-value=0.063 Score=25.77 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|-|+.||||||+.+.|...+.
T Consensus 6 I~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989988899999999999998
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.28 E-value=0.081 Score=25.05 Aligned_cols=20 Identities=30% Similarity=0.240 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996898969829
Q 000867 2 TLLLGPPCSGKTTLLLALAG 21 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1247)
.+++||+++|||||...|+-
T Consensus 9 i~iiGHvD~GKsTl~~~ll~ 28 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLIY 28 (239)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99994789989999999999
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.20 E-value=0.12 Score=24.05 Aligned_cols=20 Identities=30% Similarity=0.227 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996898969829
Q 000867 2 TLLLGPPCSGKTTLLLALAG 21 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1247)
.+|.|+.||||||..+.|..
T Consensus 4 IgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 4 IFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99979999889999999998
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.10 E-value=0.093 Score=24.67 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++-+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.10 E-value=0.082 Score=25.03 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+++++|.+|+|||||++-+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996999999999719
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.10 E-value=0.082 Score=25.03 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999789999988689
Q 000867 718 LTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
++.++|.+|+|||||++-+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=90.06 E-value=0.083 Score=24.99 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=17.1
Q ss_pred CCEEEEEECCCCCCHHHHHHH
Q ss_conf 772999995999978999998
Q 000867 715 PGVLTALMGVSGAGKTTLMDV 735 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~ 735 (1247)
.+..+.|.||.|+||||++..
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHH
T ss_pred CCCEEEEECCCCCCCEEHHHH
T ss_conf 088599976898875216999
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.93 E-value=0.16 Score=23.25 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=24.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8995772999995999978999998868
Q 000867 711 GAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 711 ~~~~~G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
..+..||+.+|.|++|.|||+|+.-++.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5636788777667999898999999999
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.90 E-value=0.1 Score=24.44 Aligned_cols=23 Identities=43% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
-+.++|++|.|||+++.-|+.+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHH
T ss_conf 96798889886779999999999
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.80 E-value=0.16 Score=23.20 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=23.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577299999599997899999886899
Q 000867 714 RPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 714 ~~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
+|.=-+||+|.-.+|||||++.|.+..
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 997089999724886999999997041
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=89.71 E-value=0.12 Score=24.00 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCC-------CCCHHH-HHHHHHHHHHH---H-HCCCEEEEEECC
Q ss_conf 88799999999851995889959999-------999999-99999999998---7-389889999416
Q 000867 833 EQRKRLTIAVELVANPSIIFMDEPTS-------GLDARA-AAIVMRTVRNT---V-DTGRTVVCTIHQ 888 (1247)
Q Consensus 833 Gqrkr~~ia~~l~~~p~il~lDEpTs-------gLD~~~-~~~i~~~l~~~---~-~~~~tvi~~~Hq 888 (1247)
+|++.-.+=.+ +..|.|+|+||.-+ +.++.. .+.+-+.|..+ . ..+.-||.++..
T Consensus 169 ~e~~~~~~f~~-a~~~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~ 235 (321)
T d1w44a_ 169 FNVFVDDIARA-MLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (321)
T ss_dssp HHHHHHHHHHH-HHHCSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHHHH-HHHCCEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 78999999999-86265897410122212345678987413345156652035566788499983797
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.66 E-value=0.18 Score=22.78 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999959999789999988689
Q 000867 717 VLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
-+++|+|-+.+|||||+++|++-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.51 E-value=0.094 Score=24.65 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=20.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
+|.|.||+||||||++--++....
T Consensus 56 itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 56 IVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 899805777478999999999987
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.24 E-value=0.13 Score=23.77 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999995999978999998868999
Q 000867 717 VLTALMGVSGAGKTTLMDVLAGRKT 741 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g~~~ 741 (1247)
-.+.|.|.-|||||||++-+.....
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~~ 28 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQH 28 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8899864888999999999985678
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.19 E-value=0.15 Score=23.27 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|=|+-||||||+++.|.-.+.
T Consensus 5 IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989988859999999999873
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.96 E-value=0.1 Score=24.37 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999599997899999886899
Q 000867 717 VLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
..++|=|+-||||||+++.|+...
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=88.66 E-value=0.16 Score=23.20 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=20.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57729999959999789999988689
Q 000867 714 RPGVLTALMGVSGAGKTTLMDVLAGR 739 (1247)
Q Consensus 714 ~~G~~~ai~G~sGsGKSTll~~l~g~ 739 (1247)
+|.....++||+|+|||.+.+.|+..
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~ 76 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAAT 76 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87669999788862489999999998
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.55 E-value=0.17 Score=23.06 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=29.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC--CCCCEEEEEEEECCCC
Q ss_conf 89957729999959999789999988689--9997289999994811
Q 000867 711 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYP 755 (1247)
Q Consensus 711 ~~~~~G~~~ai~G~sGsGKSTll~~l~g~--~~~~~~~G~i~~~g~~ 755 (1247)
+-++.|.++.+.||+|+||||+.-.++.. ..++ --+++|...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~---~~vyIDtE~ 98 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG---VAAFIDAEH 98 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC---EEEEEECCC
T ss_conf 98666336999648874889999999998754898---899998976
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.40 E-value=0.13 Score=23.80 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999995999978999998868
Q 000867 717 VLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 717 ~~~ai~G~sGsGKSTll~~l~g 738 (1247)
..+||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=88.23 E-value=0.18 Score=22.89 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=19.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577299999599997899999886899
Q 000867 714 RPGVLTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 714 ~~G~~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
+|+ -+..+||||+|||-|.+.|+...
T Consensus 67 p~~-niLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 67 SKS-NILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCC-CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCC-CEEEECCCCCCHHHHHHHHHHHC
T ss_conf 875-32441899863789999998644
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.20 E-value=0.11 Score=24.09 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 772999995999978999998868999
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAGRKT 741 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g~~~ 741 (1247)
.|-.+++-|+.||||||+.+.|+.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.92 E-value=0.18 Score=22.84 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|..|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999999679
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=87.88 E-value=0.15 Score=23.29 Aligned_cols=42 Identities=33% Similarity=0.508 Sum_probs=27.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECC
Q ss_conf 89837999996898969829989998223699988946898764312787655
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQ 54 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~~~i~yv~Q 54 (1247)
.+.+||+|+|||-|.+.|+..++ ..-+.++-... ...||+..
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~-----~~~ir~D~s~~------~e~gyvg~ 112 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD-----IPIAISDATSL------TEAGYVGE 112 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEGGGC------C-------
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-----CCEEEHHHHHC------CCCHHHHH
T ss_conf 24418998637899999986443-----53311122201------44316676
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.67 E-value=0.21 Score=22.46 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968989698299
Q 000867 2 TLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1247)
.+++|..|+|||||++-+...
T Consensus 5 ivllG~~~vGKTsl~~r~~~~ 25 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKII 25 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998889999988408
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=87.63 E-value=0.092 Score=24.72 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978999998868999
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRKT 741 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~~ 741 (1247)
=+.+.|++|+|||||.+.+++...
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 089988998529999999987379
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.23 E-value=0.29 Score=21.54 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=25.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8995772999995999978999998868
Q 000867 711 GAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 711 ~~~~~G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
|-++.|.++-+-||+|+|||||...++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9866754789805876522799999999
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=87.23 E-value=0.2 Score=22.57 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 772999995999978999998868
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
|.=-+|++|.-.+|||||++.|.+
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 971899995889809999999999
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.16 E-value=0.18 Score=22.80 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
-..++|++|.|||++..-|+.+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 73998358754479999999999
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.10 E-value=0.2 Score=22.61 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=27.6
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9588995999999999999999999998738988999941699
Q 000867 848 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 848 p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~ 890 (1247)
.+++++||.-. |+..+...+.+.+... ..+..+|+++++++
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~-~~~~~~il~tn~~~ 156 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 156 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCC-CCCEEEEEECCCCC
T ss_conf 87999978110-8999999999998568-98869999738856
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.71 E-value=0.18 Score=22.91 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHC--CCEEEEECCCCCCCHH---HHHHHHHHHHHHHHC-CCEEEEEEC
Q ss_conf 7999999998519--9588995999999999---999999999998738-988999941
Q 000867 835 RKRLTIAVELVAN--PSIIFMDEPTSGLDAR---AAAIVMRTVRNTVDT-GRTVVCTIH 887 (1247)
Q Consensus 835 rkr~~ia~~l~~~--p~il~lDEpTsgLD~~---~~~~i~~~l~~~~~~-~~tvi~~~H 887 (1247)
.+...|-.++... +-|||+||.-+=+... ....+.+.|+....+ .-.+|.++.
T Consensus 101 ~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT 159 (387)
T d1qvra2 101 ERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATT 159 (387)
T ss_dssp HHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEEC
T ss_pred HHHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECC
T ss_conf 99999999850589966987240888842777877413899999997378851666368
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.71 E-value=0.13 Score=23.66 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978999998868
Q 000867 718 LTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g 738 (1247)
++.++|.+|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.59 E-value=0.23 Score=22.19 Aligned_cols=42 Identities=12% Similarity=0.274 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99588995999999999999999999998738988999941699
Q 000867 847 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890 (1247)
Q Consensus 847 ~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~ 890 (1247)
+.+++++||+- .|...++..+.+++..-. .+..+|.++++++
T Consensus 108 ~~kviIide~d-~l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~ 149 (207)
T d1a5ta2 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPP-AETWFFLATREPE 149 (207)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCC-TTEEEEEEESCGG
T ss_pred CCCEEEECHHH-HHHHHHHHHHHHHHHHHC-CCCEEEEEECCHH
T ss_conf 64047731344-200001499999998501-1110455306865
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=86.57 E-value=0.22 Score=22.26 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+|=|+-||||||+++.|....+
T Consensus 7 I~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 7 VYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEECSCTTSSHHHHHHHHTC---
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989867789999999999817
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.41 E-value=0.32 Score=21.21 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 772999995999978999998868
Q 000867 715 PGVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 715 ~G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
...+++|.|..|.|||||.+.+..
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 840899977997888999999998
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.31 E-value=0.27 Score=21.77 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.+++|++|.|||+++..|+.+..
T Consensus 42 ~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 42 PLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
T ss_conf 67988898867799999999998
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=85.69 E-value=0.19 Score=22.64 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=9.0
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 999959999789999
Q 000867 719 TALMGVSGAGKTTLM 733 (1247)
Q Consensus 719 ~ai~G~sGsGKSTll 733 (1247)
+.|.|+.||||||.+
T Consensus 27 ~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 27 LLIMAGAGSGKTRVL 41 (318)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHH
T ss_conf 899952986689999
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.54 E-value=0.26 Score=21.85 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978999998868
Q 000867 718 LTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g 738 (1247)
++.++|..|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999888999998840
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=85.05 E-value=0.25 Score=21.95 Aligned_cols=22 Identities=50% Similarity=0.626 Sum_probs=19.1
Q ss_pred EEECCCCCCHHHHHHHHHCCCC
Q ss_conf 9837999996898969829989
Q 000867 3 LLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
+++||+|+|||.+.+.|+..+.
T Consensus 57 lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 57 LFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp EEBSCSSSSHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHC
T ss_conf 9978886248999999999835
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=84.95 E-value=0.25 Score=21.95 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=18.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9898379999968989698299
Q 000867 1 MTLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~ 22 (1247)
+..|.|..|.|||||.+.+...
T Consensus 46 ~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 46 FLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999779978889999999985
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=84.63 E-value=0.26 Score=21.81 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996898969829989
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
.++-|+-||||||+.+.++.-+.
T Consensus 36 i~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 36 VYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99966877658899999876422
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.37 E-value=0.23 Score=22.16 Aligned_cols=57 Identities=19% Similarity=0.384 Sum_probs=33.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 3468888888988879999999985199588995999999999999999999998738988999941
Q 000867 821 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887 (1247)
Q Consensus 821 ~~g~~~~~~lSgGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H 887 (1247)
++-.||.-.+++.-..=+. +.+..+++.| +..|+-+.|...+.... ..+..+++.+.
T Consensus 100 liDtPGh~dF~~ev~~al~-----~~D~allVVd-a~eGv~~qT~~~~~~a~----~~~~p~i~viN 156 (341)
T d1n0ua2 100 LIDSPGHVDFSSEVTAALR-----VTDGALVVVD-TIEGVCVQTETVLRQAL----GERIKPVVVIN 156 (341)
T ss_dssp EECCCCCCSSCHHHHHHHH-----TCSEEEEEEE-TTTBSCHHHHHHHHHHH----HTTCEEEEEEE
T ss_pred EECCCCCHHHHHHHHHHHH-----HCCCEEEEEE-CCCCCCHHHHHHHHHHH----HCCCCEEEEEE
T ss_conf 9737873889999998875-----2372499986-56682046999999998----76998699987
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=84.30 E-value=0.32 Score=21.27 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997899999886899
Q 000867 718 LTALMGVSGAGKTTLMDVLAGRK 740 (1247)
Q Consensus 718 ~~ai~G~sGsGKSTll~~l~g~~ 740 (1247)
.+.|=|+-|+||||+++.|+...
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998986778999999999981
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=84.26 E-value=0.22 Score=22.29 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 999959999789999
Q 000867 719 TALMGVSGAGKTTLM 733 (1247)
Q Consensus 719 ~ai~G~sGsGKSTll 733 (1247)
+.|.|+.||||||.+
T Consensus 17 ~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEECCCTTSCHHHHH
T ss_pred EEEEEECCCCHHHHH
T ss_conf 899962884389999
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.06 E-value=0.3 Score=21.46 Aligned_cols=22 Identities=41% Similarity=0.703 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689896982998
Q 000867 2 TLLLGPPCSGKTTLLLALAGKL 23 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1247)
..|.|++|+|||||+..|+...
T Consensus 46 ~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 46 GLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 5686799988789999999977
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.97 E-value=0.28 Score=21.58 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=16.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9898379999968989698299
Q 000867 1 MTLLLGPPCSGKTTLLLALAGK 22 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~ 22 (1247)
+|.+.||+|+||||++-.++..
T Consensus 62 i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 62 VIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 6999648874889999999998
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=83.63 E-value=0.49 Score=20.10 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 898379999968989698299899
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDS 25 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~ 25 (1247)
..|=|+-|+||||+++.|...+..
T Consensus 9 I~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 9 IYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999888667899999999998656
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.95 E-value=0.28 Score=21.66 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=23.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8995772999995999978999998868
Q 000867 711 GAFRPGVLTALMGVSGAGKTTLMDVLAG 738 (1247)
Q Consensus 711 ~~~~~G~~~ai~G~sGsGKSTll~~l~g 738 (1247)
..+..|++.+|.|++|.|||+|+.-++.
T Consensus 63 ~pig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 63 VPIGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp SCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 6766787787656888885899999997
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=82.12 E-value=0.33 Score=21.13 Aligned_cols=24 Identities=42% Similarity=0.664 Sum_probs=20.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLD 24 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1247)
+|.+-||+||||||+...++....
T Consensus 59 itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 59 ITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 789805876522799999999997
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=81.31 E-value=0.38 Score=20.75 Aligned_cols=24 Identities=25% Similarity=0.126 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 898379999968989698299899
Q 000867 2 TLLLGPPCSGKTTLLLALAGKLDS 25 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~ 25 (1247)
.+|=|+-||||||+++.|.-.+..
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999888778899999999998734
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=81.28 E-value=0.47 Score=20.18 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 898379999968989
Q 000867 2 TLLLGPPCSGKTTLL 16 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL 16 (1247)
++..|-||+|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (313)
T d2olra1 17 AVFFGLSGTGKTTLS 31 (313)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCCCCCE
T ss_conf 999704779856023
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=80.92 E-value=0.28 Score=21.59 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=22.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 899577299999599997899999886
Q 000867 711 GAFRPGVLTALMGVSGAGKTTLMDVLA 737 (1247)
Q Consensus 711 ~~~~~G~~~ai~G~sGsGKSTll~~l~ 737 (1247)
..+..|++.+|.|++|+|||+|+..+.
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 454677667600677888579999977
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| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=80.84 E-value=0.46 Score=20.24 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 898379999968989
Q 000867 2 TLLLGPPCSGKTTLL 16 (1247)
Q Consensus 2 t~IlGpsGSGKSTLL 16 (1247)
++..|-||+|||||-
T Consensus 17 alffGLSGTGKTTLs 31 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLS 31 (318)
T ss_dssp EEEEECTTSCHHHHT
T ss_pred EEEECCCCCCCCCCC
T ss_conf 999736879814221
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