Citrus Sinensis ID: 000868

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------125
MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFCIAA
cccHHccccccccccccEEEEEEcccccHHHHHHHHHHccccccEEEEcccccccEEEEEEEEEEEccHHHHHcccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccHHHHHHHHHHcccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccEEEHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEcEEEEEEEEEcccccccEEEEEcccEEEcccccEEEEEEcccccEEEEEEEEEEEEEEEEEEEcccccccccccccccccccccccEEEEccccccEEEEEcccccccccccEEEEEEEEEccEEEEEEEEEEEcccccEEEEcccEEEEEcccccccccccccccccccccccccEEEEEEEcEEEEccccccccEEEEEEEEEEEcccccccccccccccEEEEEEEEEEEEEccccccccEEEEEEEEccccccEEEEEccccccccEEEEEEEEcccccccEEEEcccccccccccccccccccccccccccEEcccccccEEEEEEccccccHHHHHHccccccEEEEEccccccccccccccccccccccccccEEEEEEEEEEEcccccccccEEEccccccccccccEEEEEEEEEEEccccccccccccccEEEEEEcccccEEEEEEEccEEEcccccccEEEEEEEEEEcccccccccccccccccccccccccccccEEEEccccccccccccc
cHcHHHHHEcccccccEEEEEEcccccHHHHHHHHHHHHccccccEEccccccccEEEEEEEEEEEccHHHHHccccccccccHccccEEEEEEEEcccHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccccccHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHccccccccccccccccccccccccccHccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccHEHHccccccccEEccccccEEEEEEEcccccccEEcEEEEEEEEEcccccccEEEEccccEEEEccccEEEEEEcccccccEEEEEEEEEEEEEEEEEcccccccccccHHHHccccccccEEEEcccccHcccccccccHHHcccccEEEEEEEEccccccccEEEEEcccccEEEcccEEEEEEEccccccccccccccccccccccccEEEEcccccEEcccccccccEEEEEEEEEcccccccccccccHHHHHHHHcHEEEEEEEEEccccccEEEEEEEEEcccccEEEEEEEEccccccEEEEEEEHcccEEEEEEEEEEEEcccccEEccccccccccccccEEEcccccEEEEEEEEEccccccccccccccccEEEEEEcccccccccccccccccccccccccccEEEEEEEEEcccccccccEEEccccccccccccEEEEEEEEEEEcccccHHHHHcccccEEEEEEcccccEEEEcccccEEEEccccccEEEEEEEEEEEEcccccccccccccccccccccccccccEEEEcccccccccEccc
MANYLAQFQSIKSTCDRIVIAvedvsdlwptiqsgfeeqlpfkraclnnktrnpvfveklpaefilttdarlrsrfpqeqllfwfrepyATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSkahpnndqaNKMAKKVFAKLEVDfnskkrercckfdihgpepnfwEDLESKVMESIRNTLDRRVQFFEDEIRKLselrfmpvwnfCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNmngkhkefggvergddeaallnpgnkalteivqddsfrefEFRQYLFACQSKLLfklnrpfevasrgypFIISFSKALAQHEDILPFCMREVWVITACLALIDATssqyndglaapdIEKEFYRLLGDLYSLCRIKFMRLAYLIghgtdierspvnsaslsmlpwpkppvwplvpadaSAEVLAKEKLILqatprvkhfgihrkplplepsvLLREANRRRaslsagnmfeifdgsgpdvslrmspsnkVQAVSMsrtnsspgfessidrpMRLAEIFVASEHALRqtisnpnllksLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSldkglfstKERQAFQSEVISLAYgemkdpvpldvsslitfsgnpgpplelcdgdpgtlsvtvwsgfpdditvDTLSLTLMATYNADEGAKALNTstatvlkpgrntitvdlppqkpgsyvlGALTghigrlrfrshsfskvgpadsddfmsyekptrpilkvfnprplVDLAAAisspllineaQWVGIIVQPidyslkgailqidtgpgltieesHFVEMEShiklsnlenchniqkdcsldinkdferlhlhdgriqlpdwasnLTSILWIPIRAinnslargsssvtpqrqSIVDGMRTIALKLQFGVCHNQIFERtiavhftdpfhvstriadkcsdgTLLLQVILHSQVNASLTIYDAWLDLQdgfvhtrqgdgrptsgffplvisssskaGILFSIclgkttpeaeVEAVRRDSLLNIqygisgkrtigahppvtaeatgaedaREGLIFRSALVlqrpvldptlaigflalpsdglrvgqLVSMKWRVERLKDFEeneasqrndEVLYEVNANADnwmiagrkrgyvslptkqgsrIVISILCVpllagyvrppqlglpgveeaniscnppgphlicvlpptlsssfciaa
MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTrnpvfveklpaEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSkahpnndqanKMAKKVFAKLEVdfnskkrercckfdihgpepnfwedLESKVMESIRNTLDRRVQFFEDEIRKlselrfmpVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQatprvkhfgihrkplplepsvllREANRRRaslsagnmfeIFDGSGPDVSLRMSPSNKVQAvsmsrtnsspgfessidrPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNAdegakalntstatvlkpgrntitvdlppqkpGSYVLGALTGHIGRLRFRSHSFSkvgpadsddfmsyEKPTrpilkvfnprPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNslargsssvtpqrqSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGisgkrtigahppVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLalpsdglrvGQLVSMKWRVERLKDfeeneasqrndeVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFCIAA
MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMlpwpkppvwplvpADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFCIAA
***YLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAH*********AKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGV******AALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPL*****************************************************************LAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSF****************PTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLA***********SIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDF**********EVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFC***
****************RIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNN*TR***FVEKLPAEFILT****************WFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFV****************VFAKLEVDFNSKKRERCCK*D*******FWEDLESKVMESIRNTLDRRVQFFEDE************WNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQY***********EFYRLLGDLYSLCRIKFMRLAYLI******************************************************************SVLLREANRRRASLSAGNMFEIFDG*******************************************************NPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDK*********AFQSEVI************LDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLM************NTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFS**********MSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEES*******************************FERLHLHDGRIQLPDWASNLTSILWIPIRAI******************VDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAE*EAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFCIAA
MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPDV**************************SIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLA**********QSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFCIAA
*ANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWP******SAEVLAKEK*ILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPD**************************SSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLS************SLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGK******************AREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFCIAA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIxxxxxxxxxxxxxxxxxxxxxRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFCIAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1247 2.2.26 [Sep-21-2011]
Q556Z31442 Trafficking protein parti yes no 0.275 0.237 0.291 7e-45
Q3TLI01259 Trafficking protein parti yes no 0.244 0.242 0.258 8e-23
P485531259 Trafficking protein parti yes no 0.243 0.241 0.260 4e-21
Q9VFB71145 Trafficking protein parti yes no 0.191 0.208 0.249 1e-13
>sp|Q556Z3|TPC10_DICDI Trafficking protein particle complex subunit 10 OS=Dictyostelium discoideum GN=trapcc10-1 PE=3 SV=1 Back     alignment and function desciption
 Score =  183 bits (465), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 196/384 (51%), Gaps = 41/384 (10%)

Query: 16  DRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSR 75
           + I I+ +D S +W  I++     LP K      KT +   VEK+P E +   D R+++ 
Sbjct: 96  EHITISYQDESSIWKYIEAELPNHLPLKNISWKTKTGHTKVVEKMPIEILQYNDERVKAH 155

Query: 76  FPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLK-LITQNDER--EWFIVFVSKAHP 132
           +  + L   +++PY  + LV C+D D +K +++ ++K  +TQ  ER  EW IV+VS    
Sbjct: 156 YDNQNL---YKKPYLYLYLVHCDDPDTYKNVVRAKIKQWVTQMTERQQEWLIVYVSLGPK 212

Query: 133 N-NDQANKMAKKVFAKLEVDFNSKKRERCCKF---DIHGP-------------------- 168
             ++  +K+ + VF +++ DFN K R+RCC+    D +                      
Sbjct: 213 RFSELTSKLTRTVFDRIKNDFNVK-RDRCCQLRFLDTNNTSSGNNKDKDNDNGGGSSGTG 271

Query: 169 -------EPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKE 221
                  + + W+D   K+ E I ++ ++ +  +EDEIRK+   R  P W++ NFF +KE
Sbjct: 272 LSTSTKQQDDLWDDFLIKMKEGIISSAEQYLTTYEDEIRKMDAKRTTPGWSYQNFFFIKE 331

Query: 222 SLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDD---EAALLNPGNK 278
            LA ++E A L+EDAL +Y ELE+ + +  N +   +    V + +       +L+   K
Sbjct: 332 GLALIYERAQLYEDALMQYFELEVLFGDPNNRSQFDQITDEVLQPNSIHCNGNILDTSFK 391

Query: 279 ALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILP 338
              +++ ++    F+F+ YLFA QSKLLF L +P E A++   FI S S  + Q+ +   
Sbjct: 392 NYRKLIYENKISLFDFKVYLFARQSKLLFLLQKPIEAATKSISFITSMSMIIKQYPNSFA 451

Query: 339 FCMREVWVITACLALIDATSSQYN 362
              +E W+ +  + LI A    ++
Sbjct: 452 PMFKESWIFSTSMELIKACQDSFD 475
May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Dictyostelium discoideum (taxid: 44689)
>sp|Q3TLI0|TPC10_MOUSE Trafficking protein particle complex subunit 10 OS=Mus musculus GN=Trappc10 PE=2 SV=2 Back     alignment and function description
>sp|P48553|TPC10_HUMAN Trafficking protein particle complex subunit 10 OS=Homo sapiens GN=TRAPPC10 PE=1 SV=2 Back     alignment and function description
>sp|Q9VFB7|TPC10_DROME Trafficking protein particle complex subunit 10 OS=Drosophila melanogaster GN=SIDL PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1247
3594938781259 PREDICTED: uncharacterized protein LOC10 1.0 0.990 0.802 0.0
3021430591258 unnamed protein product [Vitis vinifera] 0.999 0.990 0.800 0.0
3565497651258 PREDICTED: uncharacterized protein LOC10 0.995 0.987 0.783 0.0
3565440041249 PREDICTED: uncharacterized protein LOC10 0.991 0.989 0.783 0.0
4494647821249 PREDICTED: trafficking protein particle 0.995 0.993 0.781 0.0
4494767351249 PREDICTED: trafficking protein particle 0.995 0.993 0.781 0.0
2977963151259 hypothetical protein ARALYDRAFT_331786 [ 0.997 0.988 0.751 0.0
2402564441259 protein CLUB [Arabidopsis thaliana] gi|3 0.997 0.988 0.745 0.0
88855871280 unnamed protein product [Arabidopsis tha 0.997 0.971 0.723 0.0
1154890081245 Os12g0554400 [Oryza sativa Japonica Grou 0.992 0.994 0.692 0.0
>gi|359493878|ref|XP_002281921.2| PREDICTED: uncharacterized protein LOC100253761 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 2108 bits (5462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1010/1259 (80%), Positives = 1122/1259 (89%), Gaps = 12/1259 (0%)

Query: 1    MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKL 60
            MANYLA FQ+IK++CDR+VIAVEDVSDLWP ++ GFEE+LPFKRACLNNKTRNPVFVEKL
Sbjct: 1    MANYLAHFQTIKNSCDRLVIAVEDVSDLWPAVKKGFEERLPFKRACLNNKTRNPVFVEKL 60

Query: 61   PAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDER 120
             AEFILTTD RLRSRFPQEQLLFWFREPYATVVLV+CEDLDEFKTILKPRLKLI QNDER
Sbjct: 61   AAEFILTTDPRLRSRFPQEQLLFWFREPYATVVLVSCEDLDEFKTILKPRLKLIVQNDER 120

Query: 121  EWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKV 180
            EW IVFVSKAHPNNDQA KMAKKV+A+LEVDF+SKKRERCCK DIH PE NFWEDLESK+
Sbjct: 121  EWCIVFVSKAHPNNDQATKMAKKVYARLEVDFSSKKRERCCKLDIHSPEANFWEDLESKI 180

Query: 181  MESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREY 240
            MESIRNTLDRRVQF+EDEIRKLSE R MP+WNFCNFFILKESLAFMFEMAHLHED+LREY
Sbjct: 181  MESIRNTLDRRVQFYEDEIRKLSEQRLMPIWNFCNFFILKESLAFMFEMAHLHEDSLREY 240

Query: 241  DELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFA 300
            DELELCYLETVN+ GK ++FGG++RGDD+AALLNPGNK LT+IVQDDSFREFEFRQYLFA
Sbjct: 241  DELELCYLETVNVAGKQRDFGGIDRGDDQAALLNPGNKLLTQIVQDDSFREFEFRQYLFA 300

Query: 301  CQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQ 360
            CQSKLLFKLNRPFEVASRGYPFIISFSKALA HE +LPFCMREVWV+TACLALI+AT+S 
Sbjct: 301  CQSKLLFKLNRPFEVASRGYPFIISFSKALALHERMLPFCMREVWVVTACLALINATASH 360

Query: 361  YNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKP 420
            YNDG  APDIEKEFYR+ G+LYSLCR+KFMRLAYLIG+GT+IERSPVNSASLSML WP P
Sbjct: 361  YNDGFVAPDIEKEFYRIQGNLYSLCRVKFMRLAYLIGYGTEIERSPVNSASLSMLSWPMP 420

Query: 421  PVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGN 480
             VWP VP DAS+ VL KEK ILQATPRVKHFGI RKPLPLEPS+LLREANRRRASLSAGN
Sbjct: 421  AVWPPVPPDASSMVLEKEKTILQATPRVKHFGIQRKPLPLEPSILLREANRRRASLSAGN 480

Query: 481  MFEIF-------DGSGPDVSLRMSPSNKVQAVSMSRTNSSP-GFESSIDRPMRLAEIFVA 532
            M E+F       DGS  D SLRMSPS+KV A+SM+RTNSSP  FESSIDRPMRLAEI+VA
Sbjct: 481  MVEMFEGRPIFVDGSDSDASLRMSPSSKVHAISMTRTNSSPINFESSIDRPMRLAEIYVA 540

Query: 533  SEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCF 592
            +EHAL+ TIS+ +L KSL SVEEFE+KYLELTKGAA+NYH SWWKRHGVVLDGEIAAVC+
Sbjct: 541  AEHALQNTISDTDLWKSLLSVEEFEKKYLELTKGAADNYHRSWWKRHGVVLDGEIAAVCY 600

Query: 593  KHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDK 652
            +HGN+D AAKSYEKVCALY+GEGWQDLLAEVLP LAECQKILND+AGYL SCVRLLSLDK
Sbjct: 601  RHGNFDLAAKSYEKVCALYAGEGWQDLLAEVLPKLAECQKILNDQAGYLSSCVRLLSLDK 660

Query: 653  GLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVW 712
            GLFSTKERQAFQSEV+ LA+ EMK PVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVW
Sbjct: 661  GLFSTKERQAFQSEVVRLAHSEMKHPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVW 720

Query: 713  SGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGA 772
            SGFPDDIT++ LSLTL A +N DEG KAL +S A +LKPGRNTIT+ LPPQKPGSYVLG 
Sbjct: 721  SGFPDDITLEVLSLTLAAIFNVDEGVKALRSSAAPILKPGRNTITLALPPQKPGSYVLGV 780

Query: 773  LTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINE 832
            LTG IG+LRFRSHSFSK GPADSDDFMSYEKP RPILKV  PRPLVDLAAAISS LL+NE
Sbjct: 781  LTGQIGQLRFRSHSFSKGGPADSDDFMSYEKPARPILKVSKPRPLVDLAAAISSALLMNE 840

Query: 833  AQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLS----NLENCHNIQKD 888
             QWVGIIV+PI+YSLKGA+L IDTGPGL IEESH +E+E H  +S    ++E+C   +K 
Sbjct: 841  PQWVGIIVRPINYSLKGAVLYIDTGPGLKIEESHPIEIERHSDVSQSATDMESCDQARKK 900

Query: 889  CSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDG 948
             S  + ++F++L L +GRI+LPDWASN+TS++W PI AI++ LARG+SSVTPQRQSIVDG
Sbjct: 901  DSSVVIEEFKQLTLQNGRIELPDWASNITSVIWFPISAISDKLARGTSSVTPQRQSIVDG 960

Query: 949  MRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLT 1008
            MRTIALKL+FGV  NQ F+RT+AVHFTDPFHVSTR+ DKC+DGTLLLQV LHSQV A+LT
Sbjct: 961  MRTIALKLEFGVSLNQTFDRTLAVHFTDPFHVSTRVVDKCNDGTLLLQVTLHSQVKATLT 1020

Query: 1009 IYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRD 1068
            IYDAWL LQDGFVHT QGDGRPTS FFPLVI+ ++KAGILF ICLG T    E +A + +
Sbjct: 1021 IYDAWLVLQDGFVHTGQGDGRPTSDFFPLVIAPTAKAGILFCICLGTTISGDEAKAPQPE 1080

Query: 1069 SLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALP 1128
            S+LNI+YGI+G RTIGAH PVT E  G+E + + LIFRSALVLQRPV+DP LA+GFL L 
Sbjct: 1081 SVLNIRYGIAGNRTIGAHTPVTVEPAGSEGSTQDLIFRSALVLQRPVMDPCLAVGFLPLT 1140

Query: 1129 SDGLRVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVNANADNWMIAGRKRGYVSLPTK 1188
            S GLRVGQLV+MKWRVERLKDF+EN  SQ NDEVLYEVNAN++NWMIAGRKRG+VSL TK
Sbjct: 1141 SGGLRVGQLVTMKWRVERLKDFDENAVSQNNDEVLYEVNANSENWMIAGRKRGHVSLSTK 1200

Query: 1189 QGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFCIAA 1247
            QGSRIVISILC+PL+AGYV PP+LGLP V+EANISCNP GPHL+CVLPP  SSSFCI A
Sbjct: 1201 QGSRIVISILCMPLVAGYVHPPKLGLPSVDEANISCNPAGPHLVCVLPPVFSSSFCIPA 1259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302143059|emb|CBI20354.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356549765|ref|XP_003543261.1| PREDICTED: uncharacterized protein LOC100787264 [Glycine max] Back     alignment and taxonomy information
>gi|356544004|ref|XP_003540446.1| PREDICTED: uncharacterized protein LOC100782619 [Glycine max] Back     alignment and taxonomy information
>gi|449464782|ref|XP_004150108.1| PREDICTED: trafficking protein particle complex subunit 10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449476735|ref|XP_004154819.1| PREDICTED: trafficking protein particle complex subunit 10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297796315|ref|XP_002866042.1| hypothetical protein ARALYDRAFT_331786 [Arabidopsis lyrata subsp. lyrata] gi|297311877|gb|EFH42301.1| hypothetical protein ARALYDRAFT_331786 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|240256444|ref|NP_200255.5| protein CLUB [Arabidopsis thaliana] gi|332009113|gb|AED96496.1| protein CLUB [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8885587|dbj|BAA97517.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|115489008|ref|NP_001066991.1| Os12g0554400 [Oryza sativa Japonica Group] gi|77556742|gb|ABA99538.1| expressed protein [Oryza sativa Japonica Group] gi|113649498|dbj|BAF30010.1| Os12g0554400 [Oryza sativa Japonica Group] gi|215701508|dbj|BAG92932.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1247
TAIR|locus:21473241259 CLUB "AT5G54440" [Arabidopsis 0.997 0.988 0.737 0.0
DICTYBASE|DDB_G02737191442 trappc10-2 "trafficking protei 0.155 0.134 0.314 3.5e-53
DICTYBASE|DDB_G02732091442 trappc10-1 "trafficking protei 0.155 0.134 0.314 3.5e-53
MGI|MGI:13362091259 Trappc10 "trafficking protein 0.304 0.301 0.260 1.7e-38
UNIPROTKB|P485531259 TRAPPC10 "Trafficking protein 0.304 0.301 0.256 1.1e-35
ASPGD|ASPL0000058427 1433 AN1038 [Emericella nidulans (t 0.102 0.089 0.333 3.2e-24
FB|FBgn00383031145 SIDL "Shal Interactor of Di-Le 0.188 0.205 0.258 1.3e-15
TAIR|locus:2147324 CLUB "AT5G54440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4833 (1706.4 bits), Expect = 0., P = 0.
 Identities = 927/1257 (73%), Positives = 1060/1257 (84%)

Query:     1 MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKL 60
             MANYLAQFQ+IK++CDR+V AVEDV DLWPT++  FEE  P KRA L NKTRNPVFVE L
Sbjct:     1 MANYLAQFQTIKNSCDRLVAAVEDVCDLWPTVKGLFEEHQPLKRAFLTNKTRNPVFVENL 60

Query:    61 PAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDER 120
             P EFILTTDARLRSRFPQEQ LFWFREPYAT+VLVTCEDLDEFK ILKPRLKLI QNDER
Sbjct:    61 PVEFILTTDARLRSRFPQEQYLFWFREPYATIVLVTCEDLDEFKNILKPRLKLIVQNDER 120

Query:   121 EWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKV 180
             EWFIVFVSKAHP+NDQA K  KKV+AKLEVDF+SKKRERCCK D+HGPE NFWEDLE K+
Sbjct:   121 EWFIVFVSKAHPSNDQATKNVKKVYAKLEVDFSSKKRERCCKLDVHGPEGNFWEDLELKI 180

Query:   181 MESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREY 240
              E IRNTLDRR QF+EDEIRKLSE RFMP+WNFCNFFILKESLAF+FEMAHLHEDALREY
Sbjct:   181 TECIRNTLDRRAQFYEDEIRKLSEQRFMPIWNFCNFFILKESLAFIFEMAHLHEDALREY 240

Query:   241 DELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFA 300
             DELELCYLETVNM GK ++FGG +  DD+A LL PG+K LT+IVQDDSFREFEFRQYLFA
Sbjct:   241 DELELCYLETVNMPGKQRDFGGFDGEDDQAVLLKPGSKPLTQIVQDDSFREFEFRQYLFA 300

Query:   301 CQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQ 360
             CQS+LLFKLNRPFEVASRGY F+ISF+KAL  HE +LPFCMREVWVITACLALI+AT+S 
Sbjct:   301 CQSRLLFKLNRPFEVASRGYSFVISFAKALTLHESVLPFCMREVWVITACLALIEATASH 360

Query:   361 YNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMXXXXXX 420
             ++DG+ APDIEKEF+RL GDLYSL R+KFMRL YLIG+GTDIE+SP+NSA LSM      
Sbjct:   361 HHDGVVAPDIEKEFFRLQGDLYSLSRVKFMRLGYLIGYGTDIEKSPLNSACLSMLPWPKP 420

Query:   421 XXXXXXXADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGN 480
                     DAS+EVL KEK ILQAT R KHFGI RK LPLEPSVLLR ANRRRASLS GN
Sbjct:   421 AVWPSLPQDASSEVLEKEKTILQATSRTKHFGIQRKALPLEPSVLLRVANRRRASLSTGN 480

Query:   481 MFEIFDG-------SGPDVSLRMSPSNKVQAVSMSRTNSSPG-FESSIDRPMRLAEIFVA 532
             + E+FDG       SG + S R   S KVQA  MSRTNSSPG FES +DRPMRLAEIFVA
Sbjct:   481 IPEMFDGRPSFTEGSGLEASPRTPSSLKVQAPPMSRTNSSPGNFESPLDRPMRLAEIFVA 540

Query:   533 SEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCF 592
             +EHALR TIS+ +LLK+LSS+++FE KYL LTKGAA NYH SWWKRHGVVLDGEIAAVCF
Sbjct:   541 AEHALRLTISDHDLLKTLSSIQDFENKYLNLTKGAAENYHRSWWKRHGVVLDGEIAAVCF 600

Query:   593 KHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDK 652
             KHG YD AA SYEKVCALY+GEGWQDLLAEVLPNLA+CQKIL+D+AGY+ SCVRLLSLDK
Sbjct:   601 KHGKYDLAANSYEKVCALYAGEGWQDLLAEVLPNLAQCQKILDDQAGYMSSCVRLLSLDK 660

Query:   653 GLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVW 712
             GLFS+KERQAFQSEV++LA+ EMK+PVPLDVSSLITFSGN GPPL+LCDGDPG LSVTVW
Sbjct:   661 GLFSSKERQAFQSEVVTLAHSEMKNPVPLDVSSLITFSGNTGPPLQLCDGDPGNLSVTVW 720

Query:   713 SGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGA 772
             SGFPDDIT+D+LSLTL+AT N DEG +AL +S ATVL PGRNTIT  LPPQKPGSYVLG 
Sbjct:   721 SGFPDDITLDSLSLTLVATNNTDEGGQALKSSAATVLNPGRNTITFALPPQKPGSYVLGV 780

Query:   773 LTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINE 832
             +TG IGRLRFRSHSFSK GPADSDDFMSYEKPTRPILKV  PR LVDLAAA+SS LLINE
Sbjct:   781 VTGQIGRLRFRSHSFSKGGPADSDDFMSYEKPTRPILKVSKPRALVDLAAAVSSALLINE 840

Query:   833 AQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKL---SNLENCHNIQKDC 889
             AQW+GIIV+PI YSLKGAIL IDTGPGL IE+S+ +EME ++     +         +D 
Sbjct:   841 AQWIGIIVRPIAYSLKGAILHIDTGPGLKIEDSYGIEMERYMDADCDTGASKAEVFVEDS 900

Query:   890 SLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGM 949
              +   +D E L+L DG+I   DWASN++SILW+P+RA++  LARGSSSVTP +Q I++GM
Sbjct:   901 PVSSKRDSEVLNLCDGKIVFSDWASNVSSILWVPVRALSEKLARGSSSVTPLKQDILEGM 960

Query:   950 RTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTI 1009
             RT+ALKL+FGV HNQIFERTIA HFTDPF V+TR+A+KC+DGTL+LQV+LHS V A+L +
Sbjct:   961 RTVALKLEFGVHHNQIFERTIAAHFTDPFDVTTRVANKCNDGTLVLQVMLHSLVKANLIV 1020

Query:  1010 YDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDS 1069
              D WLDLQDGF+H  Q DGRPTS FFPLV+S  S+A ++FSICL K+      +    +S
Sbjct:  1021 LDVWLDLQDGFIHG-QNDGRPTSTFFPLVVSPGSRAAVVFSICLDKSMSSEGKDLQLPES 1079

Query:  1070 LLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPS 1129
             +LNI+YGI G R  GAH PV A+ +  +     L+F+SA+VLQRPVLDP L +GFL LPS
Sbjct:  1080 ILNIKYGIHGDRAAGAHRPVDADHSETDTEGRDLVFKSAIVLQRPVLDPCLTVGFLPLPS 1139

Query:  1130 DGLRVGQLVSMKWRVERLKDFEENEA-SQRNDEVLYEVNANADNWMIAGRKRGYVSLPTK 1188
             DGLRVG+L++M+WRVERLK+ +E+EA  Q++DEVLYEVNAN++NWMIAGRKRG+VSL  +
Sbjct:  1140 DGLRVGKLITMQWRVERLKELKESEAVEQQHDEVLYEVNANSENWMIAGRKRGHVSLSEE 1199

Query:  1189 QGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFCI 1245
             QGSR+VISILCVPL+AGYVRPPQLGLP VEEAN+S NP GPHL+CVLPP LSSS+C+
Sbjct:  1200 QGSRVVISILCVPLVAGYVRPPQLGLPNVEEANVSSNPSGPHLVCVLPPLLSSSYCL 1256
GO:0003674 "molecular_function" evidence=ND
GO:0005886 "plasma membrane" evidence=ISM
GO:0000910 "cytokinesis" evidence=IMP
GO:0000919 "cell plate assembly" evidence=IMP
DICTYBASE|DDB_G0273719 trappc10-2 "trafficking protein particle complex subunit 10" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273209 trappc10-1 "trafficking protein particle complex subunit 10" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1336209 Trappc10 "trafficking protein particle complex 10" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P48553 TRAPPC10 "Trafficking protein particle complex subunit 10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ASPGD|ASPL0000058427 AN1038 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
FB|FBgn0038303 SIDL "Shal Interactor of Di-Leucine Motif" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh1_pm.C_scaffold_8001129
annotation not avaliable (1259 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1247
pfam12584135 pfam12584, TRAPPC10, Trafficking protein particle 6e-33
pfam11817215 pfam11817, Foie-gras_1, Foie gras liver health fam 8e-04
>gnl|CDD|221652 pfam12584, TRAPPC10, Trafficking protein particle complex subunit 10, TRAPPC10 Back     alignment and domain information 
 Score =  123 bits (312), Expect = 6e-33
 Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 18/139 (12%)

Query: 1110 VLQRPVLDPTLAIGFLALPSDGL---RVGQLVSMKWRVERLKDFEENEASQRNDEVLYEV 1166
             +  PVLD   A+GFL L    L   RVG+ +    R+   + +     S  + E++YE+
Sbjct: 1    PVDVPVLDIVHAVGFLPLSPSCLTLCRVGEPIDANLRIRTSRRWSSE--SNPSTELMYEI 58

Query: 1167 NANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEA------ 1220
             AN DNW+++GRKRG+ S+  K+GSR  IS+  +PL+AG++  P++ +   +        
Sbjct: 59   LANPDNWLVSGRKRGHFSV--KEGSRHTISLTLIPLVAGHLPLPKVEIKSYDTGAMPRSE 116

Query: 1221 -----NISCNPPGPHLICV 1234
                  +     G  ++ +
Sbjct: 117  RPPSCEVDNRNAGETVLVL 135

This domain forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1. Length = 135
>gnl|CDD|221243 pfam11817, Foie-gras_1, Foie gras liver health family 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1247
KOG19311156 consensus Putative transmembrane protein [General 100.0
KOG4386809 consensus Uncharacterized conserved protein [Funct 100.0
PF07919554 Gryzun: Gryzun, putative trafficking through Golgi 99.94
PF12584147 TRAPPC10: Trafficking protein particle complex sub 99.71
PF11817247 Foie-gras_1: Foie gras liver health family 1; Inte 99.4
PF1274257 Gryzun-like: Gryzun, putative Golgi trafficking 98.3
PF06159249 DUF974: Protein of unknown function (DUF974); Inte 97.1
PF086261185 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC 96.7
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 95.63
KOG2625348 consensus Uncharacterized conserved protein [Funct 95.47
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 93.21
PRK10803263 tol-pal system protein YbgF; Provisional 91.27
KOG19531235 consensus Targeting complex (TRAPP) subunit [Intra 89.09
PF12688120 TPR_5: Tetratrico peptide repeat 88.33
KOG1586288 consensus Protein required for fusion of vesicles 87.73
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 87.65
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 85.9
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 85.61
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 85.21
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 84.97
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 84.57
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 82.05
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 81.87
KOG19311156 consensus Putative transmembrane protein [General 81.28
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 81.24
COG1729262 Uncharacterized protein conserved in bacteria [Fun 81.15
cd00189100 TPR Tetratricopeptide repeat domain; typically con 80.4
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 80.15
>KOG1931 consensus Putative transmembrane protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-129  Score=1166.10  Aligned_cols=1049  Identities=28%  Similarity=0.381  Sum_probs=783.7

Q ss_pred             hhccccCCeeEEEEeCCCCChHHHHHHHhhhCCCCceeeecCCCCCceeeeeeeeEEEccchhhccCCCcccccccccCc
Q 000868            9 QSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREP   88 (1247)
Q Consensus         9 ~~~~~~~~~v~i~y~Dp~~lf~~i~~~l~~~lPl~nlhWk~~~~~~~~i~~L~v~fv~~~~~~~~~~~p~~~~~~l~~~P   88 (1247)
                      |.|+++|.+.+|.|+||++||++|+++|++++||+|+||++++|+.++..+||++|+|+.++.+..  .+.+.+.++..|
T Consensus         1 ~~i~~~~~kPIvty~d~~dLf~Sl~~~~eq~lPL~~~~W~~s~~r~~~~i~L~~efi~~~e~~l~~--~~~~d~sll~~P   78 (1156)
T KOG1931|consen    1 MDIEISCGKPIVTYFDPFDLFPSLRPEFEQILPLDNIEWRRSYGRVPKVIRLPIEFIPFGEEELDQ--DKSGDKSLLEFP   78 (1156)
T ss_pred             CchhhccCCceEEEeccccchhhhHHHHHhhcCCchhhhhhhcCcCCeEEEechhhhhhhhhhccc--cccCCchhhhCc
Confidence            579999999999999999999999999999999999999988877777667999999999998854  245678889999


Q ss_pred             eEEEEEEecCChHhHHHcchHHHHhhhc----CCCCceEEEEEcCCC-CCchhhhhhhHHHHHHHhhhcCCCCCceEEEe
Q 000868           89 YATVVLVTCEDLDEFKTILKPRLKLITQ----NDEREWFIVFVSKAH-PNNDQANKMAKKVFAKLEVDFNSKKRERCCKF  163 (1247)
Q Consensus        89 ~l~i~~v~C~d~d~Yks~vR~~ik~w~~----~~~~eWlIv~v~~~~-~~~~~~~k~~~svldKik~DF~~~~~dRc~~l  163 (1247)
                      |+||+||.|.|+|+||++|||+++.|++    ++.++||||+|..++ +++++...-.+||+||||.||++|+.|||+.|
T Consensus        79 ~l~i~~v~C~D~d~YKa~vr~~~~kWlk~l~s~~~~~WmIViV~~~a~rsn~~n~~~~~sv~dKir~DF~tkq~drCv~l  158 (1156)
T KOG1931|consen   79 FLHILIVECIDIDQYKATVRPLVTKWLKNLESNSSSDWMIVIVEYAAKRSNDSNLFPVKSVMDKIRKDFPTKQTDRCVSL  158 (1156)
T ss_pred             eeEEEEEecccHHHHHHhcchHHHHHHHHhhhcCCcceEEEEEeccccccccccccchhhHHHHHhcccCCCCcceeEEe
Confidence            9999999999999999999999999987    689999999999653 34443222346999999999999999999999


Q ss_pred             ccCC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 000868          164 DIHG---PEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREY  240 (1247)
Q Consensus       164 ~~~~---~~~~~w~~l~~klK~~il~sFd~r~~~yee~ir~~~~~r~~~~wnf~~~FilkE~LA~~fe~~~L~edAL~~Y  240 (1247)
                      +.+.   +++|+||+|++|||.++|++||+|+.+|||+||.++++|++||||||+||++||+||++|||++|+||||.||
T Consensus       159 ~~~~k~~~~~e~Wn~f~qki~~~vLss~dkr~~~~ee~iRslre~r~~~~wdF~~fFl~kE~LA~iFe~l~l~edAL~qy  238 (1156)
T KOG1931|consen  159 DRPPKERQEAEFWNQFLQKIRALVLSSLDKRLTKLEESIRSLREKRNSPGWDFCEFFLTKEKLAFIFEMLNLLEDALLQY  238 (1156)
T ss_pred             ecCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            7742   3457999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh-cC-CC-cccCCCCCCCCCc---cccCCCCChhhhhhhhcCCcchhhhHhhHHHHHHHHHHHhCChHH
Q 000868          241 DELELCYLETVN-MN-GK-HKEFGGVERGDDE---AALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFE  314 (1247)
Q Consensus       241 deL~~~~~~~~~-~~-~~-~~~f~~~~~~dd~---~~~l~~~~~~~r~li~~~~is~fdfr~YlFsrQ~~LL~~l~~~~e  314 (1247)
                      |||+++|++.+. .+ |+ +.|||+++.+||.   +.++-++.++.|+.|+++.+++|+||.|+|+||+.||++++|++|
T Consensus       239 del~a~~sq~i~~~g~~k~q~~l~~f~kpd~s~~g~~ll~~gs~~~~q~i~d~~ftl~efR~yLf~~Q~~Lll~lnrp~e  318 (1156)
T KOG1931|consen  239 DELDAEFSQRIMNMGDGKLQVWLGSFSKPDDSLFGGSLLIPGSLEKTQHIQDKYFTLFEFRLYLFERQTLLLLKLNRPFE  318 (1156)
T ss_pred             HHHHHHHHHHHhcCCCccccccccccCCchhhhcCceEEecCchHHHHhhhcCceeeehHHHHHHHHHHHHHHhcCCcHH
Confidence            999999999995 44 23 7999999988885   678889999999999999999999999999999999999999999


Q ss_pred             HhhchHHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcccCCCCCCCchhHHHHhhhhhHHHHHHHHHHHHHH
Q 000868          315 VASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAY  394 (1247)
Q Consensus       315 v~~r~~~fi~~~~~~l~~~e~~l~~~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l~~l~~  394 (1247)
                      ||+|+++|+.++.+.+..++.+++.+++.||+|.+|++++++|..   .+-..|+..+.+.++++++|.+|+.+|.++|.
T Consensus       319 va~r~~e~l~s~lqel~Ll~~s~~~~~~~~w~i~a~L~~~e~~~~---~~~~~~n~~t~~~~~~~~iw~~ar~kL~~m~~  395 (1156)
T KOG1931|consen  319 VASRAYELLFSFLQELSLLESSVPLGALKCWEITAALEYLEFTEV---SGPLLPNIKTELFMLCADIWSYARMKLYGMAL  395 (1156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhc---cccccccccchHHHHhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999992   12234555556888999999999999999999


Q ss_pred             hhcCCCCCcCCCcccccccCCCCCCCCCCCCCCCCchhHHHHHHhhhhccCCccccccccCCCCCCCchHHHHHHHHhhh
Q 000868          395 LIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRA  474 (1247)
Q Consensus       395 ~~g~~~~~~~~p~~~~sl~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~l~~r~~l~~~~~~~~  474 (1247)
                      +||..++-                .|.        -.+++++.                          .         .
T Consensus       396 ~~~li~d~----------------~p~--------~~se~l~~--------------------------~---------~  416 (1156)
T KOG1931|consen  396 LCGLIPDS----------------DPN--------YKSEQLKE--------------------------T---------F  416 (1156)
T ss_pred             HhccCCCC----------------CCC--------ccccccce--------------------------E---------e
Confidence            99996651                110        01222210                          0         0


Q ss_pred             hcccCccccccCCCCCCccccCCCCcccccccccccCCCCCCCCCCCcchhhhhHhhhhhhhhccCCChHHHHHhhcCHH
Q 000868          475 SLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVE  554 (1247)
Q Consensus       475 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~L~~AL~S~e  554 (1247)
                      .+..|        .|+...                    +...                  .  +.-.+.++++|+.+..
T Consensus       417 ~~~~~--------l~d~r~--------------------~~~k------------------e--~~S~~~k~~~~~~~~~  448 (1156)
T KOG1931|consen  417 VLSTG--------LLDNRP--------------------TLTK------------------E--ALSLFNKLEEALQRIV  448 (1156)
T ss_pred             eehhh--------hhhccc--------------------Ccch------------------h--hhhhHHHHHHHHHHHH
Confidence            01111        111100                    0000                  0  0114689999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHh
Q 000868          555 EFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKIL  634 (1247)
Q Consensus       555 ~F~~~Y~~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L  634 (1247)
                      +|.++|+++.+.++..|+++.|.|.|..++.|+|++|...+.+++|..++.++...+..++|....++++..++.|++.|
T Consensus       449 s~~k~~~~l~~~~~~~y~~~~rl~~ar~~~~d~~N~y~~~~~p~~~v~~~t~~~k~~~~e~wa~~~s~t~~~l~~f~~~L  528 (1156)
T KOG1931|consen  449 SFLKHYLGLLKAQISKYEEAVRLRLARYVGLDLGNFYSILKIPQKAVDSLTHCLKLDLLEIWAEPVSATLVLLANFLNIL  528 (1156)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchhhhHhhhcccchhhhhhhccCcchhhhhccchhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhcCCCCCc------------ccc-CCcceEeecCC--------
Q 000868          635 NDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPV------------PLD-VSSLITFSGNP--------  693 (1247)
Q Consensus       635 ~~~~eYv~~~l~LLs~~~~~~s~~~r~~~~~ell~~~~~~l~~~~------------~~~-l~~l~~~~~~~--------  693 (1247)
                      +...+|.+++.-+.+.  ..+.+..|..++.+++++..--.....            .++ ++..++.....        
T Consensus       529 ~~~~~~~k~~~~ia~~--~~L~~~~r~h~~~k~l~~~~~~~~s~~hl~~~~~~n~~v~~~~h~~v~Diev~~~~~~~~~~  606 (1156)
T KOG1931|consen  529 GLCKAYDKTESSIAKF--HDLQELNRKHLMYKLLGLFEVFLNSKVHLARANVHNYEVNLDSHGFVLDIEVVTMKVKCMDG  606 (1156)
T ss_pred             HHHHhhhhhhhHHHhh--HHHHHHHHHHHHHHHHhHHHhhhcchhhhhcccchhhhhhhhhccccceeEEeeccceeecc
Confidence            9999999998745443  225566788999998876641100000            000 00000000000        


Q ss_pred             -----CC-Ccc-----------ccC---CCCe---EEEEE------------------------EEeCCCCceE------
Q 000868          694 -----GP-PLE-----------LCD---GDPG---TLSVT------------------------VWSGFPDDIT------  720 (1247)
Q Consensus       694 -----~~-~~~-----------~~~---~d~~---~L~V~------------------------l~s~lP~~I~------  720 (1247)
                           +| ++.           +|.   .+.+   +..|.                        +.+.-|.+.+      
T Consensus       607 ~~~s~~~v~~L~~~~~v~~~~~~C~di~~~~~~l~s~~v~l~gi~~~~~~~~~q~e~~s~~~iem~~~tk~dn~l~~~~~  686 (1156)
T KOG1931|consen  607 DVISQGPVDFLYKSIVVNKLILECRDIMYGEAELLSFEVILEGITFVKEFPVNQDELISLPEIEMKNPTKVDNSLQAHGL  686 (1156)
T ss_pred             eeeeccchHhhHhhhhhhhHHHHHHhhccchhhheeeeeEeeccccccccccchhhhccchhheeecCccccchhhhhhh
Confidence                 00 000           000   0000   11122                        2221111111      


Q ss_pred             -----eeeEEEEEEec------cccCCCceEEeecCCeEeeCCceEEEEEcCCCcCeeEEEEEEEEEEcceEEEeccccC
Q 000868          721 -----VDTLSLTLMAT------YNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSK  789 (1247)
Q Consensus       721 -----~d~v~l~L~~~------~~~~~~~~~l~s~~~~~L~PG~Nki~l~~~~~~~G~y~l~~l~i~ig~l~F~s~~f~~  789 (1247)
                           -.+++++..++      ....++..-.-+..++.|.||.|.+++..++..+|.|...+++.++|.+.|+++.+. 
T Consensus       687 ~c~~~~~~l~~~~s~s~~~~~s~v~~ee~~~~~s~s~v~Lspg~N~i~~~~~~~~~g~~~~~~L~~qi~sl~f~~~q~~-  765 (1156)
T KOG1931|consen  687 NCDEYASKLSVQQSSSLESLQSPVEVEEGIGNMSCSPVSLSPGENQITFRLNAPFPGVYLLYQLCDQIGSLDFISKQSF-  765 (1156)
T ss_pred             ccccchhhcceeecccccccccchhhhcccccccccceeeccCcceeEEecCCCCCCeeeehhhhcccceEEEEccccC-
Confidence                 11122211111      000111112236678999999999999999999999999999999999999964332 


Q ss_pred             CCCCCCCCcccccCCCCCeEEEEcCCCccceEEeecCccccccceEEEEEEEcCcccc-cceEEEEecCCCcccccccch
Q 000868          790 VGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSL-KGAILQIDTGPGLTIEESHFV  868 (1247)
Q Consensus       790 ~~~~~~~~~~~~e~~~~~~~~v~~~~~~~~L~a~~~~p~Li~~~q~V~l~i~sg~~~i-~~~~L~l~~~~gl~i~~~~~~  868 (1247)
                        |+.+++.++++    |...+.+   ..+        .+.|+.|+|..++..|...| .++.|++.|.....+..+..+
T Consensus       766 --~~~k~d~~s~~----P~~~~~~---l~~--------lla~I~q~v~~~~~g~i~~i~~~~~l~l~ce~~~~m~~~~~T  828 (1156)
T KOG1931|consen  766 --PTKKNDQGSTE----PETKKER---LQC--------LLAGIVQSVEDIVKGGILHIKNGLNLSLRCEKEVRMRSSENT  828 (1156)
T ss_pred             --CcccccccccC----Cccccch---HHH--------HHhhcceeeeeEEeccEEEecCCCcceEEecccceecccccc
Confidence              67777777766    3333321   122        44457888888887777666 466666665444443333221


Q ss_pred             hhhccccccccccccCccccccccccccccccccccceeecCCCCCcceeeEEEEEEEeeccccCCcccccCcccccccc
Q 000868          869 EMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDG  948 (1247)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~lp~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~v~~  948 (1247)
                      .+.     ++.. .+         ++..++.. ...+.+.+.+++.+....-++|+++.-+   .+.          .+|
T Consensus       829 ~~~-----ae~~-~~---------d~~~~~s~-~~~p~~~~~d~e~~~~~~~~ip~l~~~d---~~s----------s~h  879 (1156)
T KOG1931|consen  829 TIF-----AEAA-RN---------DKNIFESL-LCTPKLIFFDFEESFISLYEIPVLNGFD---CFS----------SDH  879 (1156)
T ss_pred             ccc-----cccc-cc---------Cccchhhh-ccccceEEecchhcccccccccccCCcc---ccc----------ccc
Confidence            110     1110 00         01111111 2223344445554444445666664222   011          112


Q ss_pred             ceEEEEEeeeccccccceeeEEEEEeeCCeeeeeeeeeccCCCceEEEEEEccccccceEEeeeeeeecCCccccccCCC
Q 000868          949 MRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDG 1028 (1247)
Q Consensus       949 ~~~~~l~~~~~~~~~~i~~~~isl~f~~PF~~~~~l~S~~~~~k~~lqV~v~~~s~~~l~i~~~~L~~~~~~~~~~~~~~ 1028 (1247)
                         ..+++.|+ |+|+++|+.|+.+|.+||++++++++.|+|+..++||+++++....+...+..+.+.+|+.+..+.+.
T Consensus       880 ---~~~kvsin-~~~s~~e~~IA~~f~~~~~vt~~l~~~~~~~~~~lqvl~~~~~~~~l~~~~~~l~~~~~~i~~q~~~~  955 (1156)
T KOG1931|consen  880 ---FNLKVSIN-LPFSQLELFIADAFLIPFDVTWRLLFECGDTFKELQVLKHLLYDYDLFKEDQILVLLPGEIRKQNDLL  955 (1156)
T ss_pred             ---ccceeEec-cchhhhheehhhheecccceeEeeehhcCcceeeHHHHHHHHHHhhhhhhceEEEecCcchhhhcCCC
Confidence               34445556 77888999999999999999999999999987799999999999999888999988776666666555


Q ss_pred             CCCCCccceeecCCCeeEEEEEEEcCCCCCchhhhhcccceeEEE--EEeeccccccCCCCC--eeeeecCcccccccee
Q 000868         1029 RPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNI--QYGISGKRTIGAHPP--VTAEATGAEDAREGLI 1104 (1247)
Q Consensus      1029 ~p~~~~~~l~l~~~~~~s~~f~i~~~~~~~~~~~~~~~~~~~l~~--~y~~~~~~~~~~~~~--~~~~fdl~~~~~~~~l 1104 (1247)
                      ++. +.+|...    ..+.+|.+++.+..++.  ++  ..+....  .+-...++.+....|  |.+.|++       +.
T Consensus       956 ~t~-S~~p~~~----~~s~~~~~il~~~~ep~--~~--lh~~~s~~~~~~~d~d~~~~~~~~r~y~~~~ql-------v~ 1019 (1156)
T KOG1931|consen  956 NTK-SFFPNEC----IESVVFDKILICLNEPE--SI--LHSRGSAGASFVTDMDELERNLVPRTYTVPFQL-------VG 1019 (1156)
T ss_pred             Ccc-ccccHHH----HHHHHHHHHHHHhcCCc--cc--ccccccccccccchHHhhhcccccccccceecc-------cC
Confidence            444 6666544    44455555454432310  00  1111111  222222322333334  4447754       44


Q ss_pred             eeeeeeeccccccccceeeeccCCCCcceeCceEEEEEEEEeeccchhhhccc--CCceEEEEEeeCCCcEEEEeeeeee
Q 000868         1105 FRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQ--RNDEVLYEVNANADNWMIAGRKRGY 1182 (1247)
Q Consensus      1105 ~~~~~~l~~~~~~~~~~~i~~p~p~~~~rVG~~~~l~~~I~~~~~~~~~~~~~--~~~~l~yev~~~s~~WmvsG~k~g~ 1182 (1247)
                      |.+.+.|+        +.+.+|.|.++||||..|+|+|+|+++.++.+.+.+.  ...++||||++++.+|||||||+|+
T Consensus      1020 ~~~~~dvq--------a~~~p~~~~~~~rv~~~~~mel~iTrl~el~~s~k~~e~qs~elmYEv~a~s~~Wli~Gr~~g~ 1091 (1156)
T KOG1931|consen 1020 FEPFFDVQ--------AEQMPTSHDELCRVGALIGMELSITRLVELLESDKQDEIQSGELMYEVLANSNNWLIAGRKRGV 1091 (1156)
T ss_pred             ceeeeeee--------eeeccCcchhHHHHhhccCceEEEEeehhcccchhhhhcccceEEEEecCCCceEEEecCccce
Confidence            88888887        5566778999999999999999999998888754221  2678999999999999999999999


Q ss_pred             EEeeCCCCceEEEEEEEEEccCCCCCCCcccccCcccCccCCCCCCCcEEEEeCCCCCCcccccC
Q 000868         1183 VSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFCIAA 1247 (1247)
Q Consensus      1183 vs~~~~~~~~~~~~~~liPL~aG~l~lP~l~l~~~~~~~~s~~~~~~~~i~V~P~~~~~~~~~~~ 1247 (1247)
                      |+|+.++ ++|++++.+|||+|||||+|+|+|++|.+++.+....+++.+.++|++.++|.|.+.
T Consensus      1092 Is~~~~q-~t~~i~v~~vPL~aGyl~lP~v~l~n~~~a~~s~k~d~~~~v~~lPpvlnss~~l~v 1155 (1156)
T KOG1931|consen 1092 ISMKRKQ-TTHQISVHVVPLKAGYLPLPRVRLTNYNDAGKSLKVDKHNLVEPLPPVLNSSPDLQV 1155 (1156)
T ss_pred             eeeeccc-cceEEEEEEEEeccccccCceeeccccccccccccCCCCCcccCCcccccCCCCCcC
Confidence            9999876 899999999999999999999999999999999999999999999999999999763

>KOG4386 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway Back     alignment and domain information
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] Back     alignment and domain information
>PF12742 Gryzun-like: Gryzun, putative Golgi trafficking Back     alignment and domain information
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins Back     alignment and domain information
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>KOG2625 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>KOG1931 consensus Putative transmembrane protein [General function prediction only] Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1247
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 2e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 66.4 bits (161), Expect = 6e-11
 Identities = 81/630 (12%), Positives = 178/630 (28%), Gaps = 164/630 (26%)

Query: 17  RIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPV--FVEKLPA---EFILTTDAR 71
           + +++ E++  +   +              L +K    V  FVE++     +F+++    
Sbjct: 43  KSILSKEEIDHI--IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS---P 97

Query: 72  LRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAH 131
           +++   Q  ++      Y         D   F      RL+   +   R+     + +  
Sbjct: 98  IKTEQRQPSMM---TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQA----LLELR 148

Query: 132 PNNDQA-NKMA---KKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDL-----ESKVME 182
           P  +   + +    K   A L+V   S K +    F I      FW +L        V+E
Sbjct: 149 PAKNVLIDGVLGSGKTWVA-LDV-CLSYKVQCKMDFKI------FWLNLKNCNSPETVLE 200

Query: 183 SIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDE 242
            ++  L +    +       S ++            ++  L  +   +  +E+ L     
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHS-------IQAELRRLL-KSKPYENCLLVLL- 251

Query: 243 LELCYLETVNMNGKHKEFGG------VERGDDEAALLNPGNKALTEIVQDD---SFREFE 293
             +   +  N       F          R       L+      T I  D    +    E
Sbjct: 252 -NVQNAKAWNA------FNLSCKILLTTRFKQVTDFLSAATT--THISLDHHSMTLTPDE 302

Query: 294 FRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLAL 353
            +  L          L  P E      P  +S      +          + W    C  L
Sbjct: 303 VKSLLLKYLDCRPQDL--PRE-VLTTNPRRLSIIAESIRDG----LATWDNWKHVNCDKL 355

Query: 354 IDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLS 413
                S  N  L  P   ++ +  L        + F               + + +  LS
Sbjct: 356 TTIIESSLNV-L-EPAEYRKMFDRLS-------V-FP------------PSAHIPTILLS 393

Query: 414 MLPWPKPPVWPLVPADASAEVLAK--EKLILQATPRVKHFGIH------RKPLPLEPSV- 464
           ++       W  V       V+ K  +  +++  P+     I       +  L  E ++ 
Sbjct: 394 LI-------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 465 --LLREANRRRAS---------------------LSAGNMFEIFDG-------------- 487
             ++   N  +                       L      E                  
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 488 ---SGPDVSLRMSPSNKVQAVSMSR---TNSSPGFESSIDRPM----RLAEIFVASEHA- 536
                   +   S  N +Q +   +    ++ P +E  ++  +    ++ E  + S++  
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

Query: 537 -LRQTISNPNLLKSLSSVEEFEQKYLELTK 565
            LR  +   +      ++  FE+ + ++ +
Sbjct: 567 LLRIALMAED-----EAI--FEEAHKQVQR 589
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1247
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 94.97
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 94.9
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.97  E-value=0.076  Score=26.17  Aligned_cols=86  Identities=14%  Similarity=-0.007  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCCCHHHH
Q ss_conf             9999999988428813358985999999975189999999999999776208950179-989999999999924612099
Q 000868          563 LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLL-AEVLPNLAECQKILNDEAGYL  641 (1247)
Q Consensus       563 Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~l~~~~~~Y~~egW~~L~-~~iL~~~a~C~k~L~~~~~Yv  641 (1247)
                      ...+|+..+...+....+..+...+|..|..+|+|.+|..+|..+.......+..... ...+...+-|....++.+.-.
T Consensus       140 ~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~  219 (290)
T d1qqea_         140 CYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA  219 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             99999999873376033346889999999981739999999999998681332455569999999999999846599999


Q ss_pred             HHHHHHH
Q ss_conf             9999982
Q 000868          642 LSCVRLL  648 (1247)
Q Consensus       642 ~~~l~LL  648 (1247)
                      ...-+..
T Consensus       220 ~~~~~~~  226 (290)
T d1qqea_         220 RTLQEGQ  226 (290)
T ss_dssp             HHHHGGG
T ss_pred             HHHHHHH
T ss_conf             9999999
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure