Citrus Sinensis ID: 000870


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGESVKSMPFVPDGSEGTINPLDGSKRFKNLQNAPGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLADYQASNKKKSHNDAEVSDNAAGSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKMKPTPPVREVASRKRARSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTEFLNVNDDEVAEDYDDGDGCPEDARVLENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKLMKADF
ccccHHHHccccccHHHHHHHcccccccHHHHHcccHHHHHHHHcccccccHHHHHccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHHHHHHHccHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccEEHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEccccccccccc
ccHHHHHHHccccHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEccccccccccccccccHHHHHHccccccccHHHccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccHcccccccHHccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccHHccccccccHHHcccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccHHHHHHHcccccccEEcccccccccccccccccccccccccccEEcccccEEccHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccEEEEEEcccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccEEEcccccccccccccccEEEcccccccccccccccccccccccHHccccccccccccccEEccccccccccccccccccccccEEEccccccccccHHHcccccccEEEcccccccccccccccccccEEcccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccHcccccccccccccccccccccccccccccHHHccccccccccHHHHHHHHHHHHHccccccccccEEEHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEccccHHHHccc
MFYSQFIlakkgplgTIWIAAHLERKLrknqvadtdigvsvdsilfpdvPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRstavdlppeestapyhsitlpetfdlddfelpdndifqgnyvdhhvstreqitlqdtmdgmaystsqfglderfgdgdasqmgldldedllldkgtaaghgvsdadpqgsvkptthweqDNISERMNEIseertvndganqlervgldaepieyaeapstpglvqepnlssgqKALAsydhfesedqnsnelmATESrvndlsnsdchngdghtadwplhkdsnhdtvqcmlpekngyhvRDAAVKQAESLGesvksmpfvpdgsegtinpldgskrfknlqnapgmlsgesqqvnsdktaaslnctnvtcdmqdlnpetcpgstnmpvsedRLADYQAsnkkkshndaevsdnaagsgslVVVDadihacpdakdpkmlnidvAHEETASVSinvlkpcsyhtsdphmsspghdnslaqnlqplgvdlhsserskmnqasvdvqgeecyltdvmqseksqisgpsvcgdiqedngtldepldnatasNNELKKLnnsitsdlpapekllsvpegllnkpndlivestpekevlagsggvdagnklnsgkkrsyteSTITVeslnssesfgvdrtkrnsefipddddllSSILVgrkssvlkmkptppvrevasrkraRSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIrkkapctgpEILMIQMQFLeddifnepiftgmsaeLTSVHCEihdlskisisetdkdhgsseiandigcsiapnvieggkqgskepvalrnngdtqpaetsiqteshqgidhqfgaqntdaqghinsdtDVVKTVqneplaelnemdvdrgnvevaeeascsvnhgfgtssqtdvasaevcnqptgdktntvdaSLLVDtvcltpeptvdaqpvevgtsvakmdnakgvedtevIDRNIENIVAVETeakgtdgvlveegkvgvsvengadvetdrsVLTDAvntqegvsletggyndlaaangdnsrlevrnedgplagdwgsngkdptsnhmfseepvidstnsvelggdtinvslddgksqvdlrspmddgrmeieevtigndteflnvnddevaedyddgdgcpedarvlensgwssrTRAVSKYLQTLFvrepvqgrkVLALDHLLVGKTRKEASRMFFETLVLKTKdyihveqarpldninikpgaklmkadf
MFYSQFIlakkgplgTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRstavdlppeestapyhSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGhgvsdadpqgsvkptthweqdNISERMNEIseertvndganQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGESVKSMPFVPDGSEGTINPLDGSKRFKNLQNAPGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLADYQASNKkkshndaevsdnaagSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKevlagsggvdagnklnsgkkrsytestitveslnssesfgvdrtkrnsefipddddllssilvgrkssvlkmkptppvrevasrkrarsasqtnalkrkvlmddtmvlhgdvirqqltntedirrirkkapctgpEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTpeptvdaqpvevgtsvakmdnakgvedtevidrNIENIVAVeteakgtdgvlveegkvgvsvengadvetdrsVLTDAVNtqegvsletggyndLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTInvslddgksqvdlrspmddgRMEIEEvtigndteflnVNDDEVAEDYDDGDGCPEDARvlensgwssrtRAVSKYLQTLfvrepvqgrkvlaldhllvgktrkeaSRMFFETLVLKtkdyihveqarpldninikpgaklmkadf
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGldldedllldKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGESVKSMPFVPDGSEGTINPLDGSKRFKNLQNAPGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLADYQASNKKKSHNDAEVSDNAAGSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPddddllssILVGRKSSVLKMKPTPPVREVASRKRARSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTEFLnvnddevaedyddgdgCPEDARVLENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKLMKADF
**YSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDL*******PYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAY**********************************************************************************************************************************************************************C**********************************************************************************************************************************LVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPC*************************************************Y***********************************************************************************************************************************************************************************KVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKIS***************DIGCSIA**********************************************************************************************************************TVDASLLVDTVCLTPEPTVDA**V*V***********GVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVE*******************************************************************************************************************IGNDTEFLNV*************************GWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNIN************
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDI**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DLLSSI****************************************MDDTMVLHGDVIRQQLTN*********KAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKI****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VSK***********************VGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKLM****
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGESVKSMPFVPDGSEGTINPLDGSKRFKNLQNAPGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLAD****************DNAAGSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSY************DNSLAQNLQPLGVDLHSS***********VQGEECYLTDVMQ**********VCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKM*********************NALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISIS********SEIANDIGCSIAPNVIEGGKQGSKEPVALRN***************HQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTEFLNVNDDEVAEDYDDGDGCPEDARVLENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKLMKADF
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLD************************************************************************************************************************************DTVQCMLPEKNGYHVRDAAVKQ**SLGESVKSMPFVPDGSE*********************************************************************************************SLV**D*DIHACPDAKDPK*LNIDVAH*****VSINV*K*CSYHT************************************************************************************************SDLPAPEKLLSVPEGLLNKPNDLIVESTPE***************************************************IPDDDDLLSSILVGRKSSVLKMKP*********************LKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKD**********************************************************AQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASC*****************E**N********TVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAA*G**SRLE*RNEDGPLAGDW*********NH**SEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTEFLNVNDDEV********GCPEDA*VLENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGA*L*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGESVKSMPFVPDGSEGTINPLDGSKRFKNLQNAPGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLADYQASNKKKSHNDAEVSDNAAGSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKMKPTPPVREVASRKRARSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTEFLNVNDDEVAEDYDDGDGCPEDARVLENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKLMKADF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1246 2.2.26 [Sep-21-2011]
Q61550635 Double-strand-break repai yes no 0.168 0.330 0.401 1e-35
Q9FQ19693 Sister chromatid cohesion no no 0.117 0.210 0.486 2e-35
Q3SWX9630 Double-strand-break repai yes no 0.146 0.288 0.438 2e-35
O60216631 Double-strand-break repai yes no 0.146 0.288 0.438 2e-35
O93310629 Double-strand-break repai N/A no 0.130 0.259 0.470 7e-35
A2AU37552 Double-strand-break repai no no 0.126 0.284 0.459 2e-33
Q9H4I0556 Double-strand-break repai no no 0.126 0.282 0.459 3e-33
D2HSB3554 Double-strand-break repai no no 0.126 0.283 0.459 1e-32
Q9FQ20810 Sister chromatid cohesion no no 0.122 0.188 0.428 4e-28
P30776628 Cohesin subunit rad21 OS= yes no 0.105 0.210 0.444 3e-26
>sp|Q61550|RAD21_MOUSE Double-strand-break repair protein rad21 homolog OS=Mus musculus GN=Rad21 PE=1 SV=3 Back     alignment and function desciption
 Score =  152 bits (385), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/234 (40%), Positives = 136/234 (58%), Gaps = 24/234 (10%)

Query: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
           MFY+ F+L+K+GPL  IW+AAH ++KL K  V + ++  SV+SI+ P V +ALR S HLL
Sbjct: 1   MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
           LGVVRIY RK  YL  DC+EA +KIK AFR   VDLP E   A Y++ITLPE F   D  
Sbjct: 61  LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query: 121 LPD-NDIFQGNYVDHHVSTREQITLQDTMDGMAY----STSQFGLDER--FGDGDASQMG 173
           LPD +DI        + S  E+IT+++ +  ++         FG+D+R    +G A +  
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFE-- 178

Query: 174 LDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVND 227
              D+D+L+   T+A + +   +P+ S          N++E+MN +  E    D
Sbjct: 179 ---DDDMLV--STSASNLL--LEPEQSTS--------NLNEKMNHLEYEDQYKD 217




Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. Plays a role in apoptosis, via its cleavage by caspase-3/CASP3 or caspase-7/CASP7 during early steps of apoptosis: the C-terminal 64 kDa cleavage product may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway (By similarity). The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/ESPL1 and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis.
Mus musculus (taxid: 10090)
>sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2 Back     alignment and function description
>sp|Q3SWX9|RAD21_BOVIN Double-strand-break repair protein rad21 homolog OS=Bos taurus GN=RAD21 PE=2 SV=1 Back     alignment and function description
>sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2 Back     alignment and function description
>sp|O93310|RAD21_XENLA Double-strand-break repair protein rad21 homolog OS=Xenopus laevis GN=rad21 PE=1 SV=1 Back     alignment and function description
>sp|A2AU37|RD21L_MOUSE Double-strand-break repair protein rad21-like protein 1 OS=Mus musculus GN=Rad21l1 PE=1 SV=2 Back     alignment and function description
>sp|Q9H4I0|RD21L_HUMAN Double-strand-break repair protein rad21-like protein 1 OS=Homo sapiens GN=RAD21L1 PE=2 SV=3 Back     alignment and function description
>sp|D2HSB3|RD21L_AILME Double-strand-break repair protein rad21-like protein 1 OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1 Back     alignment and function description
>sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2 Back     alignment and function description
>sp|P30776|RAD21_SCHPO Cohesin subunit rad21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad21 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1246
2555474341247 cohesin subunit rad21, putative [Ricinus 0.969 0.968 0.504 0.0
3594958901335 PREDICTED: uncharacterized protein LOC10 0.959 0.895 0.468 0.0
2241012591208 predicted protein [Populus trichocarpa] 0.939 0.969 0.491 0.0
2960833951133 unnamed protein product [Vitis vinifera] 0.875 0.962 0.484 0.0
3740956031336 cohesin subunit [Camellia sinensis] 0.976 0.910 0.440 0.0
3565669611223 PREDICTED: uncharacterized protein LOC10 0.910 0.927 0.438 0.0
3565300091247 PREDICTED: uncharacterized protein LOC10 0.916 0.915 0.436 0.0
4494703581147 PREDICTED: uncharacterized protein LOC10 0.884 0.960 0.440 0.0
449509197892 PREDICTED: uncharacterized LOC101223080, 0.696 0.973 0.451 0.0
357507871 1487 Double-strand-break repair protein rad21 0.651 0.546 0.431 1e-177
>gi|255547434|ref|XP_002514774.1| cohesin subunit rad21, putative [Ricinus communis] gi|223545825|gb|EEF47328.1| cohesin subunit rad21, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1045 bits (2702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 648/1285 (50%), Positives = 825/1285 (64%), Gaps = 77/1285 (5%)

Query: 1    MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
            MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFP+VPIALRLSSHLL
Sbjct: 1    MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEVPIALRLSSHLL 60

Query: 61   LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
            LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE
Sbjct: 61   LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120

Query: 121  LPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDL 180
            LPDNDIFQGNY+DHHVSTREQITLQDTMDG  YSTSQFGLDERFGDGD SQ+GLDL+E +
Sbjct: 121  LPDNDIFQGNYIDHHVSTREQITLQDTMDGAVYSTSQFGLDERFGDGDTSQVGLDLEEVI 180

Query: 181  LLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAE 240
            LL   +      +DA  Q SV+     +     ERM   SEE  +N   +++E +  + E
Sbjct: 181  LLIIMSIFSDCRNDA--QTSVELLEPSKTVASHERMTGTSEEMPLNGTRSKIEDLAANLE 238

Query: 241  PIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNG 300
             I+YA+APSTPGL++EPNLSS +  L   DH ESED N   L   E   N  S S  H+G
Sbjct: 239  VIDYAQAPSTPGLMEEPNLSSVKDCLVCDDHLESEDHNVRGLGGMEISKNAPSKSALHHG 298

Query: 301  DGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGESVKSMPFVPDG-SEGTI 359
            D    D  L    +HDT+  M  E++     D  + QA   GE + +      G ++ T+
Sbjct: 299  DD-ARDLSLVDHLSHDTIAYMPTEEHSRLSGDLEINQAGLEGELLSTAVTSEHGPADETV 357

Query: 360  NPLDGSKRFKNLQNAPGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPV 419
            +  D S + ++          +++ V+SD      +   +  D ++   ET     +  +
Sbjct: 358  SRQDESHQIED----------KNKVVSSDNGETVTSIDQINGDYEESLAETNDNKFSNKI 407

Query: 420  SEDRLADYQASNKKKSHNDAEVSDNAAGSGSLVVVDADIHACPDAKDPKMLNIDVAHEET 479
             E  L    A     S         +    +L  V+ +       +D + L   V +E+ 
Sbjct: 408  GECLLNGKVAPMPAHS---------SGLPTALETVNVEGQDGQGQEDSETLLDHVNNEQM 458

Query: 480  ASVSINVLKPCSYHTSDPHMSSPGHDNS-LAQNLQPLGVDLHSSERSKMNQA------SV 532
                I+VL PC+ H S P + S   D S L  +LQ + V   SSE  +  +       S 
Sbjct: 459  KPTCISVLLPCNSHLSQPDILSGEADTSVLVSDLQSVDVAPLSSETVQREEGLHTSGTST 518

Query: 533  DVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSD 592
             VQGEEC++TDV+QSE++QIS P++ G+ QED G  D  LDN  ++NN+ + L +  T++
Sbjct: 519  KVQGEECHVTDVVQSEENQISDPTLNGETQEDGGKHDVRLDNEISNNNQNENLTSPTTTE 578

Query: 593  LPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVE 652
            LPAPEKLLS+P+ LL+KP+DL+VE TP+KEV     G  AG ++ +GKKRS+ ES +TV+
Sbjct: 579  LPAPEKLLSIPQTLLDKPHDLLVE-TPDKEVQEEGDGSGAGIRI-TGKKRSFAESALTVQ 636

Query: 653  SLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKMKPTPPVREVASRKRARSAS 712
            SLNS ESFGV R+KR  E IPDDDDLLSSILVGRKSS LKMKPTPP  EV S KRAR  S
Sbjct: 637  SLNSVESFGVTRSKRTVESIPDDDDLLSSILVGRKSSALKMKPTPPAPEVPSMKRARFTS 696

Query: 713  QTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFN 772
            + +ALKRKVLMDD+MVLHGD+IRQQLTNTEDIRR+RKKAPCT  EILMIQ QFLED+IF+
Sbjct: 697  RPSALKRKVLMDDSMVLHGDIIRQQLTNTEDIRRLRKKAPCTRTEILMIQRQFLEDEIFS 756

Query: 773  EPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSS-EIANDIGCSIAPNVIEGGKQGSK 831
            EP+ TGMSA LT +H E  D S I + E D ++ +S E+ ND   +      +GG +GS 
Sbjct: 757  EPVLTGMSAYLTRMHSEAFDWSGIKVCENDDNNMASLEVVNDEHSARQIVKQDGGMEGST 816

Query: 832  EPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVV--KTVQNEPLAE 889
            EPV  R + + Q +E SI  ++ Q  DH  G+ + D + H+N   D+V  +T  +E L E
Sbjct: 817  EPVGCRTDIEEQTSEVSINKDNQQVEDH-LGSYDIDNE-HMNGVVDIVGHRTSVHEHLGE 874

Query: 890  LNEMDVDRGNVEVAEEASCSVNH---GFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVD 946
             +EM+ D+ N EV++    ++NH   G  T SQ++ AS ++   P+     TVD S  VD
Sbjct: 875  TSEMENDKVNSEVSD----AINHSAPGLET-SQSEPASGDILEMPSA----TVDQS--VD 923

Query: 947  TVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEE 1006
            T  + P   +  Q +E    +  M N  G++ TEV+D   + I AVE E +  + +L+EE
Sbjct: 924  TPII-PSDEIHNQLIEDVAGLRDMSNDIGLDCTEVVDNCAKKIGAVEAELRTGEELLLEE 982

Query: 1007 GKVGVSVENGADVETDRSVLTDAVNTQ-EGVSLETGGYNDLAAANGDNSRLEVRN----- 1060
             KV  SVE G D + D S   D  +     VS E G + + ++ N D +  E+ N     
Sbjct: 983  SKVRASVEIGGDEQVDGSAPNDGADASLANVSSEAGSFVNFSSVNIDQAFEEIENYKHGV 1042

Query: 1061 --EDGPLAGD-WGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQ----VD 1113
              ++G L G+  G + KD TS+H+ SEE  I+ST ++ L GD  N S++DG +     VD
Sbjct: 1043 FSDNGGLGGNSMGIDDKDQTSDHLCSEEAKINSTYTIGLDGDFKNTSMNDGDNTVSQLVD 1102

Query: 1114 LRSPMD------------DGRMEIEEVTIGNDTEFLNVNDDEVAEDYDDGDGCPEDARVL 1161
             +  MD            +   +I +V   NDTEFLNV+DDE+ ED ++G    ED R+L
Sbjct: 1103 QQDTMDTQNAPPDHVTTGECDQDIRDVGFANDTEFLNVDDDEIDEDDNEGLPNAEDPRLL 1162

Query: 1162 ENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDY 1221
            ENSGWSSRTRAV+KYLQTLF +E   GRKVL +D+LL GKTRKEASRMFFETLVLKTKDY
Sbjct: 1163 ENSGWSSRTRAVAKYLQTLFDKEAEHGRKVLLMDNLLTGKTRKEASRMFFETLVLKTKDY 1222

Query: 1222 IHVEQARPLDNINIKPGAKLMKADF 1246
            +HVEQ +P DNINIKP AKLMK+DF
Sbjct: 1223 VHVEQGKPFDNINIKPRAKLMKSDF 1247




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495890|ref|XP_002265684.2| PREDICTED: uncharacterized protein LOC100263480 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224101259|ref|XP_002312205.1| predicted protein [Populus trichocarpa] gi|222852025|gb|EEE89572.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296083395|emb|CBI23350.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|374095603|gb|AEY85029.1| cohesin subunit [Camellia sinensis] Back     alignment and taxonomy information
>gi|356566961|ref|XP_003551693.1| PREDICTED: uncharacterized protein LOC100803412 [Glycine max] Back     alignment and taxonomy information
>gi|356530009|ref|XP_003533578.1| PREDICTED: uncharacterized protein LOC100809967 [Glycine max] Back     alignment and taxonomy information
>gi|449470358|ref|XP_004152884.1| PREDICTED: uncharacterized protein LOC101223080 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449509197|ref|XP_004163522.1| PREDICTED: uncharacterized LOC101223080, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|357507871|ref|XP_003624224.1| Double-strand-break repair protein rad21-like protein [Medicago truncatula] gi|355499239|gb|AES80442.1| Double-strand-break repair protein rad21-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1246
TAIR|locus:21814571031 SYN4 "sister chromatid cohesio 0.229 0.277 0.667 7e-169
TAIR|locus:2164501810 SYN2 [Arabidopsis thaliana (ta 0.124 0.191 0.427 3.8e-41
TAIR|locus:2097548693 SYN3 "AT3G59550" [Arabidopsis 0.235 0.424 0.348 5.2e-41
UNIPROTKB|O60216631 RAD21 "Double-strand-break rep 0.210 0.415 0.347 1.5e-36
UNIPROTKB|Q3SWX9630 RAD21 "Double-strand-break rep 0.210 0.415 0.347 2.6e-36
UNIPROTKB|E2QRU9631 RAD21 "Uncharacterized protein 0.210 0.415 0.347 2.7e-36
UNIPROTKB|F1S1K0631 LOC100738633 "Uncharacterized 0.210 0.415 0.347 2.7e-36
UNIPROTKB|O93310629 rad21 "Double-strand-break rep 0.209 0.414 0.349 6.1e-36
ZFIN|ZDB-GENE-060503-223637 rad21b "RAD21 homolog (S. pomb 0.201 0.394 0.368 8.5e-36
UNIPROTKB|F1NYD0633 RAD21 "Uncharacterized protein 0.130 0.257 0.470 9.3e-36
TAIR|locus:2181457 SYN4 "sister chromatid cohesion 1 protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 959 (342.6 bits), Expect = 7.0e-169, Sum P(2) = 7.0e-169
 Identities = 195/292 (66%), Positives = 219/292 (75%)

Query:     1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
             MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFP+ PIALRLSSHLL
Sbjct:     1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLL 60

Query:    61 LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
             LGVVRIYSRKVNYLFDDCSEALLK+KQAFRS AVDLPPEESTAPYHSITLPETFDLDDFE
Sbjct:    61 LGVVRIYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYHSITLPETFDLDDFE 120

Query:   121 LPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGXXXXXXX 180
             LPDN+IFQGNYVDHHVST+EQITLQDTMDG+ YSTSQFGLDERFGDGD SQ         
Sbjct:   121 LPDNEIFQGNYVDHHVSTKEQITLQDTMDGVVYSTSQFGLDERFGDGDTSQAALDLDEAV 180

Query:   181 XXXKGTAAG--HGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLD 238
                K        GV   D    +          I + M  +SE   ++    Q+E + ++
Sbjct:   181 FQDKDVIGSDDEGVPGIDHNAYLDAAA----PGIKDSMEGVSEAMPMDFNEEQVEDLAMN 236

Query:   239 AEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVN 290
              E IE A+AP TPGLV+ PN SS ++ +A  DH + ED N+ E + +   +N
Sbjct:   237 NEFIEDAQAPQTPGLVEVPNSSSVREQMACDDHMDVEDLNAEEGIKSSGELN 288


GO:0000228 "nuclear chromosome" evidence=IEA
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0007062 "sister chromatid cohesion" evidence=ISS;IMP
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007067 "mitosis" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
TAIR|locus:2164501 SYN2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097548 SYN3 "AT3G59550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O60216 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SWX9 RAD21 "Double-strand-break repair protein rad21 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QRU9 RAD21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S1K0 LOC100738633 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|O93310 rad21 "Double-strand-break repair protein rad21 homolog" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-223 rad21b "RAD21 homolog (S. pombe) b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYD0 RAD21 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_fgenesh4_pg.C_LG_VIII0671
hypothetical protein (1209 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1246
pfam04825110 pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec 3e-50
pfam0482455 pfam04824, Rad21_Rec8, Conserved region of Rad21 / 1e-15
>gnl|CDD|218280 pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec8 like protein Back     alignment and domain information
 Score =  172 bits (438), Expect = 3e-50
 Identities = 63/112 (56%), Positives = 81/112 (72%), Gaps = 3/112 (2%)

Query: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
           MFYS  +L KKGPL T+W+AA LE+KL + Q+ + DI  S + IL P+ PIALRLS  LL
Sbjct: 1   MFYSHELLTKKGPLATVWLAATLEKKLSRKQILEVDIPKSCEEILNPEAPIALRLSGQLL 60

Query: 61  LGVVRIYSRKVNYLFDDCSEALLKIKQAFR-STAVDLPPEESTAPYHSITLP 111
            GVVRIYSRKV YL +DC+EAL ++K+AFR    +DLP  E  A  +++TLP
Sbjct: 61  YGVVRIYSRKVEYLLEDCNEALSRLKKAFRIPGQLDLP--ERKASPNALTLP 110


This family represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Members of this family mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation. Length = 110

>gnl|CDD|113590 pfam04824, Rad21_Rec8, Conserved region of Rad21 / Rec8 like protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1246
KOG1213614 consensus Sister chromatid cohesion complex Cohesi 100.0
PF04825111 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like prot 100.0
PF0482455 Rad21_Rec8: Conserved region of Rad21 / Rec8 like 99.55
PF02616242 ScpA_ScpB: ScpA/B protein; InterPro: IPR003768 Thi 95.78
PRK00104242 scpA segregation and condensation protein A; Revie 95.53
COG1354248 scpA Rec8/ScpA/Scc1-like protein (kleisin family) 90.58
PRK00478505 scpA segregation and condensation protein A/unknow 84.04
>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
Probab=100.00  E-value=4.1e-58  Score=531.75  Aligned_cols=123  Identities=71%  Similarity=1.097  Sum_probs=120.8

Q ss_pred             CCcchhhhhccCCchhhHHHhhccCCCchhhhcccchHHHHHHhcCCCCcchhhhhhccccceEEEEecchhhHHHHHHH
Q 000870            1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSE   80 (1246)
Q Consensus         1 MFYS~~LLSKKGPLatIWLAAtl~KKLsKkqIl~vDI~ksceeIl~PevPLALRLSG~LLlGVVRIYSrKv~YLLsDcn~   80 (1246)
                      |||||+||+||||||+|||||||+|||+|+||++|||+++|+.|++|.+|||||||||||+||||||||||+|||+||++
T Consensus         1 MFYs~~vLakKGPLa~IWlAAh~~kKL~K~qv~~tdI~~sve~Il~p~~~lALRtSghLLlGVVRIYSrK~~YLl~Dcne   80 (614)
T KOG1213|consen    1 MFYSHFVLAKKGPLAKIWLAAHWEKKLSKAQVFETDIPQSVEEILQPKVPLALRTSGHLLLGVVRIYSRKVKYLLDDCNE   80 (614)
T ss_pred             CcchhhhHhhcCchhhhhHHhHHhhhcchhheeeccHHHHHHHHhCcccceehhhhcccceeeEEeehhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 000870           81 ALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPD  123 (1246)
Q Consensus        81 aL~KIk~aFR~~~VDLP~e~~~A~~eaITLPE~fdLDDfeLPd  123 (1246)
                      +|.|||++||+++||+|....+.++++||||++|++|++++|+
T Consensus        81 al~kIk~afr~~~vd~p~~~~~~~~~siTLPE~~~d~d~~l~~  123 (614)
T KOG1213|consen   81 ALLKIKMAFRSGQVDLPELAPRLPTHSITLPETFEDDDFDLPD  123 (614)
T ss_pred             HHHHHHHHhccccccCCCcccccccccccchhhhccccccccc
Confidence            9999999999999999999999999999999999999998885



>PF04825 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like protein; InterPro: IPR006910 This domain represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families Back     alignment and domain information
>PF04824 Rad21_Rec8: Conserved region of Rad21 / Rec8 like protein; InterPro: IPR006909 This domain represents a conserved C-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families Back     alignment and domain information
>PF02616 ScpA_ScpB: ScpA/B protein; InterPro: IPR003768 This family represents ScpA, which along with ScpB (IPR005234 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ] Back     alignment and domain information
>PRK00104 scpA segregation and condensation protein A; Reviewed Back     alignment and domain information
>COG1354 scpA Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair] Back     alignment and domain information
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1246
1w1w_E121 SCC1, sister chromatid cohesion protein 1; cohesin 7e-20
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 8e-04
>1w1w_E SCC1, sister chromatid cohesion protein 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: a.4.5.57 Length = 121 Back     alignment and structure
 Score = 85.6 bits (211), Expect = 7e-20
 Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 1140 NDDEVAEDYDD--GDGCPEDARVLENSGWSSRTRAVSKYLQTLFV-REPVQGRKVLALDH 1196
             ++ +     +       E  R       S     ++K L+      + V    VL    
Sbjct: 10   EENIIDAKTRNEQTTIQTEKVRPTPGEVASKAIVQMAKILRKELSEEKEVIFTDVLKSQA 69

Query: 1197 --LLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKL 1241
                   T++EASR FF+ L L T+  I + Q     NI I     L
Sbjct: 70   NTEPENITKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDAKPAL 116


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1246
d1w1we_79 a.4.5.57 (E:) Sister chromatid cohesion protein 1 1e-14
>d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 79 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Rad21/Rec8-like
domain: Sister chromatid cohesion protein 1 (SCC1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 Score = 68.0 bits (166), Expect = 1e-14
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 10/81 (12%)

Query: 1171 RAVSKYLQTLFVREPVQGRKVLALDHLLVGK--------TRKEASRMFFETLVLKTKDYI 1222
            +A+ +  + L  R+ +   K +    +L  +        T++EASR FF+ L L T+  I
Sbjct: 1    KAIVQMAKIL--RKELSEEKEVIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCI 58

Query: 1223 HVEQARPLDNINIKPGAKLMK 1243
             + Q     NI I     L +
Sbjct: 59   GLSQTEAFGNIKIDAKPALFE 79


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1246
d1w1we_79 Sister chromatid cohesion protein 1 (SCC1), C-term 99.81
>d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Rad21/Rec8-like
domain: Sister chromatid cohesion protein 1 (SCC1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81  E-value=3.4e-21  Score=141.82  Aligned_cols=71  Identities=30%  Similarity=0.423  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHC--------CCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCEEECCCC
Q ss_conf             99999999999873048877774012989841--------5999899999998660278994002488988652515787
Q 000870         1168 SRTRAVSKYLQTLFVREPVQGRKVLALDHLLV--------GKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGA 1239 (1246)
Q Consensus      1168 KRT~qML~~LRt~F~~~d~~g~ksLSLseLL~--------G~TRKeAAr~FFElLVLKTrd~IdLeQeEPYGDI~IsaGP 1239 (1246)
                      |+|++|++.||.+|...     +.+.|++++.        ++|||+||++||++|||+|++||+|+|++|||||.|++||
T Consensus         1 K~t~q~a~~Lr~el~~~-----~~v~Fsdll~~~~~~~~~~~tR~~Aa~~Fy~~LvL~t~~~i~v~Q~~pygdI~I~~~p   75 (79)
T d1w1we_           1 KAIVQMAKILRKELSEE-----KEVIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDAKP   75 (79)
T ss_dssp             CHHHHHHHHHHHHTTSC-----SCEEHHHHHHTTC--------CHHHHHHHHHHHHHHHHTSEEEEECSTTCCEEEEECG
T ss_pred             CHHHHHHHHHHHHHCCC-----CCEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECC
T ss_conf             94899999999997556-----7421345434341145457789999999999999713786788757876756883076


Q ss_pred             CCCC
Q ss_conf             3312
Q 000870         1240 KLMK 1243 (1246)
Q Consensus      1240 kL~k 1243 (1246)
                      +||+
T Consensus        76 ~l~~   79 (79)
T d1w1we_          76 ALFE   79 (79)
T ss_dssp             GGC-
T ss_pred             CCCC
T ss_conf             4449