Citrus Sinensis ID: 000872
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1245 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.978 | 0.849 | 0.692 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.974 | 0.852 | 0.675 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.991 | 0.847 | 0.681 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.991 | 0.847 | 0.681 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.975 | 0.846 | 0.695 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.992 | 0.852 | 0.664 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.989 | 0.853 | 0.672 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.991 | 0.842 | 0.673 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.990 | 0.839 | 0.658 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.985 | 0.851 | 0.665 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1844 bits (4776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 881/1273 (69%), Positives = 1024/1273 (80%), Gaps = 55/1273 (4%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPP SGKTTL+LALAGKLD +LK +GKV+YNGH++HEFVPQRTAAYISQHD+HIG
Sbjct: 189 MTLLLGPPSSGKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIG 248
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETL FSARCQGVGSR++ML ELSRREKAA I PDADID++MKA EGQEANV+T
Sbjct: 249 EMTVRETLEFSARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVT 308
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DY+LK+L LD+CADT+VGD+M+RGISGGQ+KRVTTGEMLVGP+ ALFMDEISTGLDSSTT
Sbjct: 309 DYVLKILGLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTT 368
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
+ IVNSL Q IL GTA+ISLLQPAPE YNLFDDIIL+SDG IVYQGP + V +FF SM
Sbjct: 369 YSIVNSLRQSVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESM 428
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP+RKG+ADFLQEVTS+KDQ+QYW + +EPYRF+T KEF A+QSFHVGRKLGDEL
Sbjct: 429 GFKCPQRKGVADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELA 488
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
PFDK HPAALT KYG+GKKELLK C RE LLMKRNSFVY+F+ +Q+ +A+I MT
Sbjct: 489 TPFDKTKCHPAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMT 548
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+F RT+M RD+ DG IY GALFF++ I FNGM+E++MTI KLPVFYKQRDL F+PSWA
Sbjct: 549 LFFRTEMPRDTTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWA 608
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
YA+P+WILKIP+++VEV +WV +TYYVIGFD N RF KQ+LLL++VNQM+S MFR I A
Sbjct: 609 YAIPSWILKIPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGA 668
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
VGR+M VA+TFGS LLL F LGGFVLSRDD+K WW WGYW SP+MY+ N+I+VNEF G
Sbjct: 669 VGRTMGVASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGK 728
Query: 541 SWKKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGT 600
W I+P + LG V+ SRGFF +AYWYW+GVGAL GF ++F F ++LAL++LNPF
Sbjct: 729 KWNHIVPGGNETLGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDK 788
Query: 601 SKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETD 660
+A + E+ ++ E+ SS IT ++ D +I
Sbjct: 789 PQAVLPEDGENAEN-------------GEVSSQITSTDGGD--------------SISES 821
Query: 661 QPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALM 720
Q +GMVLPFEP S+TFD++ YSVDMPQEMK +G +D+LVLL GVSGAFRPGVLTALM
Sbjct: 822 QNNKKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALM 881
Query: 721 GVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 780
GV+G+GKTTLMDVLAGRKT GYI G I ISGYPK QETF RISGYCEQNDIHSPYVTVYE
Sbjct: 882 GVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTVYE 941
Query: 781 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAV 840
SL+YSAWLRL +V+ KTR+MFV+EVMELVEL PLR ALVGLPGVNGLSTEQRKRLTIAV
Sbjct: 942 SLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVGLPGVNGLSTEQRKRLTIAV 1001
Query: 841 ELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA--- 897
ELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1002 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1061
Query: 898 -------------------------GIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFA 932
PGV+KI++GYNPATWMLEVTA +QE+ LG+DF
Sbjct: 1062 MKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFT 1121
Query: 933 AIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHY 992
+YK+S+LYR NKALI EL P PGSK+L+F QY SF+TQC+ACLWKQHWSY RNP Y
Sbjct: 1122 EVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAY 1181
Query: 993 TAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDL 1052
TAVRF+FT FI+LIFGTMFWD+GTK +K QDL N MG MY AV FLGV N SSVQPVV +
Sbjct: 1182 TAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAI 1241
Query: 1053 ERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLF 1112
ER+VFYRE+ AGMYS + YAF QV IEIPYIFVQ+ Y +IVYAMIGFEW KFFW+LF
Sbjct: 1242 ERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLF 1301
Query: 1113 FMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWA 1172
MFF+LLYFTF+GMM VA TPN ++ASIV+ FYG+WN+ SGFIIPR R+PVWWRW YWA
Sbjct: 1302 IMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWA 1361
Query: 1173 NPIAWTLYGFFASQFGDVQDRLESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFV 1232
NP+AWTLYG ASQFGD+Q +L ETV+QFLR Y+GFKHDFLG VAAV+ +FAF
Sbjct: 1362 NPVAWTLYGLVASQFGDIQTKLSDNETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFT 1421
Query: 1233 FALGIRVLNFQKR 1245
FA I+ NFQ+R
Sbjct: 1422 FAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1818 bits (4708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 860/1274 (67%), Positives = 1017/1274 (79%), Gaps = 61/1274 (4%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
M LLLGPP SGKTTL+LALAGKLD LK +G+VTYNGH M+EFVPQRTAAYI Q+D+HIG
Sbjct: 182 MALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIG 241
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRET A++AR QGVGSRYDML EL+RREK A I PD DID+FMKA+ G++ NV+T
Sbjct: 242 EMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMT 301
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DYILK+L L+VCADT+VGD+MLRGISGGQ+KRVTTGEMLVGP+ ALFMDEISTGLDSSTT
Sbjct: 302 DYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTT 361
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
+ IVNSL + HI NGTALISLLQPAPE +NLFDDIIL+++G+I+Y+GP +HV +FF +M
Sbjct: 362 YQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETM 421
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP RKG+ADFLQEVTS+KDQ QYW R DEPYRF+ V+EF AFQSFHVGR++GDEL
Sbjct: 422 GFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELA 481
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
+PFDK SHPAALTT+KYGVG KEL+K FSRE+LLMKRNSFVY F+ Q++ +A + MT
Sbjct: 482 LPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMT 541
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+F RT+M + + DG +YTGALFFIL + FNGM+E+SMTIAKLPVFYKQRDL FYP+W
Sbjct: 542 LFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWV 601
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
Y+LP W+LKIPIS +E ++ F+TYYVIGFD N GR FKQY+LL+++NQM+SA+F+++AA
Sbjct: 602 YSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAA 661
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
+GR+M+VANTFG+ +L+ F LGG VLSRDDIKKWW WGYW SP+MY QNAI+ NEF G+
Sbjct: 662 LGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGH 721
Query: 541 SWKKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGT 600
SW + + N ++ LG+ L SRGF AYWYW+G GAL GF++LF FGFTLAL+FLN G
Sbjct: 722 SWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGK 781
Query: 601 SKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETD 660
+A I+EE S E + ++ RSE +E
Sbjct: 782 PQAVIAEEPASDETELQSA----------------RSEG----------------VVEAG 809
Query: 661 QPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALM 720
K RGMVLPFEP S+TFD + YSVDMPQEM +G +D+LVLL GV+GAFRPGVLTALM
Sbjct: 810 ANKKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALM 869
Query: 721 GVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 780
GV+G+GKTTLMDVLAGRKT GYI GNITISGYPKNQ+TF RISGYCEQ DIHSP+VTVYE
Sbjct: 870 GVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYE 929
Query: 781 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAV 840
SL+YSAWLRL EV+ R++F+EEVMELVEL PLRQALVGLPG +GLSTEQRKRLTIAV
Sbjct: 930 SLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAV 989
Query: 841 ELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD---- 896
ELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 990 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1049
Query: 897 ------------------------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFA 932
I G++KI +GYNPATWMLEV+ SQE ALGVDFA
Sbjct: 1050 LKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFA 1109
Query: 933 AIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHY 992
+YK+SELY+ NK LI+ELS+PAPGSK+LYF QY SF TQCMA LWKQHWSY RNP Y
Sbjct: 1110 QVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPY 1169
Query: 993 TAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDL 1052
TAVRFLFTI I+L+FGTMFWD+G KT +QDL N MG MY AV FLG+ N +SVQPVV++
Sbjct: 1170 TAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNV 1229
Query: 1053 ERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLF 1112
ER+VFYRE+ AGMYS M YAFAQV IEIPY+ VQA Y LIVYAMIGFEWTA KFFW+LF
Sbjct: 1230 ERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLF 1289
Query: 1113 FMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWA 1172
FM+ S L FTF+GMM VA TPNHHIAS+VS+ FYG+WN+ SGF+IPR +PVWW W YW
Sbjct: 1290 FMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWL 1349
Query: 1173 NPIAWTLYGFFASQFGDVQDRL-ESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAF 1231
P+AWTLYG ASQFGD+ + + +S +VKQF+R +YG++ FLG VAA+ + P LFA
Sbjct: 1350 CPVAWTLYGLIASQFGDITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAV 1409
Query: 1232 VFALGIRVLNFQKR 1245
+FA+GI+ NFQKR
Sbjct: 1410 IFAIGIKSFNFQKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1784 bits (4621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 870/1276 (68%), Positives = 1008/1276 (78%), Gaps = 41/1276 (3%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPPGSGKTTL+LALAG+L LKASGKVTYNGH M EFVP+RTAAYISQHD+HIG
Sbjct: 192 MTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIG 251
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETLAFSARCQGVGSR+DML ELSRREKAA I PDADID FMKA GQEANV T
Sbjct: 252 EMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNT 311
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DYILK+L L++CADT+VGDEMLRGISGGQRKRVTTGEMLVGPA ALFMDEISTGLDSSTT
Sbjct: 312 DYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 371
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
F IVNSL Q HIL GTA+ISLLQPAPE YNLFDDIIL+SDGQIVYQGP E V +FF SM
Sbjct: 372 FQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESM 431
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP RKG+ADFLQEVTS+KDQ QYW R+D+PYRFVTVKEFV AFQSFH GR + +EL
Sbjct: 432 GFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELA 491
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
+PFDK SHPAAL T +YG KELLKA RE LLMKRNSFVY+FR Q+M +++I MT
Sbjct: 492 VPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMT 551
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+F RTKM RDS+T G IY GALFF + I FNG +E+++T+ KLPVF+KQRDL FYP+W+
Sbjct: 552 LFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWS 611
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
Y +P+WILKIPI+ +EV +VF+TYYVIGFDSN G FFKQYLL+L +NQM+ ++FR I
Sbjct: 612 YTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGG 671
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
R+M+VAN F S +LL+ VLGGF+L+R+ +KKWW WGYW SP+MYAQNAI VNE +G+
Sbjct: 672 AARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGH 731
Query: 541 SWKKILPNK--TKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPF 598
SW KI+ + + LG++VL SRG F +A WYW+G GA+ GF ILF FTLAL++L P+
Sbjct: 732 SWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPY 791
Query: 599 GTSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIE 658
G S+ +SEE + + G V H++ +R R + +++ T ++
Sbjct: 792 GNSRQSVSEEELKEKRANLNGEIV-------GDVHLSSGSTR---RPMGNGTENDSTIVD 841
Query: 659 TD-QPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLT 717
D + RGMVLPF P SL+FD + YSVDMPQEMK +GV DD+L LL GVSG+FRPGVLT
Sbjct: 842 DDTEVTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLT 901
Query: 718 ALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVT 777
ALMGV+G+GKTTLMDVLAGRKT GYI G+I ISGYPK QETF R+SGYCEQNDIHSP VT
Sbjct: 902 ALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVT 961
Query: 778 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLT 837
VYESLL+SAWLRL +V+S TR+MF+EEVMELVEL LR ALVGLPGVNGLSTEQRKRLT
Sbjct: 962 VYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLT 1021
Query: 838 IAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD- 896
IAVELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTV+TGRTVVCTIHQPSIDIFEAFD
Sbjct: 1022 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDE 1081
Query: 897 ------------AG---------------IPGVSKIRDGYNPATWMLEVTAPSQEIALGV 929
AG IPGVSKI+DGYNPATWMLEVT QE ALGV
Sbjct: 1082 LFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGV 1141
Query: 930 DFAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRN 989
DF+ IYK SELY+ NKALI++LS+PAP S +LYF QY S TQCMACLWKQ+ SY RN
Sbjct: 1142 DFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRN 1201
Query: 990 PHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPV 1049
P Y AVRF FT I+L+FGT+FWD+G K TK QDLFN MG MY AV F+GV+N +SVQPV
Sbjct: 1202 PPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPV 1261
Query: 1050 VDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFW 1109
V +ER+VFYRE+ AGMYS YAF QV+IEIPY VQA Y +IVYAMIGFEWTAAKFFW
Sbjct: 1262 VAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFW 1321
Query: 1110 FLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWS 1169
+LFFM F+LLYFTF+GMM V TPN+HIASIVS+ FY +WN+ SGF+IPR R+P+WWRW
Sbjct: 1322 YLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWY 1381
Query: 1170 YWANPIAWTLYGFFASQFGDVQDRLESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLF 1229
WA P+AWTLYG SQFGD++ +E G VK F+ +Y+GFKH +LG VA VV LF
Sbjct: 1382 CWACPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLF 1441
Query: 1230 AFVFALGIRVLNFQKR 1245
A +F I NFQKR
Sbjct: 1442 ASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1781 bits (4613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1276 (68%), Positives = 1007/1276 (78%), Gaps = 41/1276 (3%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPPGSGKTTL+LALAG+L LKASGKVTYNGH M EFVP+RTAAYISQHD+HIG
Sbjct: 192 MTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIG 251
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETLAFSARCQGVGSR+DML ELSRREKAA I PDADID FMKA GQEANV T
Sbjct: 252 EMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNT 311
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DYILK+L L++CADT+VGDEMLRGISGGQRKRVTTGEMLVGPA ALFMDEISTGLDSSTT
Sbjct: 312 DYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 371
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
F IVNSL Q HIL GTA+ISLLQPAPE YNLFDDIIL+SDGQIVYQGP E V +FF S
Sbjct: 372 FQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFEST 431
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP RKG+ADFLQEVTS+KDQ QYW R+D+PYRFVTVKEFV AFQSFH GR + +EL
Sbjct: 432 GFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELA 491
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
+PFDK SHPAAL T +YG KELLKA RE LLMKRNSFVY+FR Q+M +++I MT
Sbjct: 492 VPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMT 551
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+F RTKM RDS+T G IY GALFF + I FNG +E+++T+ KLPVF+KQRDL FYP+W+
Sbjct: 552 LFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWS 611
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
Y +P+WILKIPI+ +EV +VF+TYYVIGFDSN G FFKQYLL+L +NQM+ ++FR I
Sbjct: 612 YTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGG 671
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
R+M+VAN F S +LL+ VLGGF+L+R+ +KKWW WGYW SP+MYAQNAI VNE +G+
Sbjct: 672 AARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGH 731
Query: 541 SWKKILPNK--TKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPF 598
SW KI+ + + LG++VL SRG F +A WYW+G GA+ GF ILF FTLAL++L P+
Sbjct: 732 SWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPY 791
Query: 599 GTSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIE 658
G S+ +SEE + + G V H++ +R R + +++ T ++
Sbjct: 792 GNSRQSVSEEELKEKRANLNGEIV-------GDVHLSSGSTR---RPMGNGTENDSTIVD 841
Query: 659 TD-QPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLT 717
D + RGMVLPF P SL+FD + YSVDMPQEMK +GV DD+L LL GVSG+FRPGVLT
Sbjct: 842 DDTEVTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLT 901
Query: 718 ALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVT 777
ALMGV+G+GKTTLMDVLAGRKT GYI G+I ISGYPK QETF R+SGYCEQNDIHSP VT
Sbjct: 902 ALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVT 961
Query: 778 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLT 837
VYESLL+SAWLRL +V+S TR+MF+EEVMELVEL LR ALVGLPGVNGLSTEQRKRLT
Sbjct: 962 VYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLT 1021
Query: 838 IAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD- 896
IAVELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTV+TGRTVVCTIHQPSIDIFEAFD
Sbjct: 1022 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDE 1081
Query: 897 ------------AG---------------IPGVSKIRDGYNPATWMLEVTAPSQEIALGV 929
AG IPGVSKI+DGYNPATWMLEVT QE ALGV
Sbjct: 1082 LFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGV 1141
Query: 930 DFAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRN 989
DF+ IYK SELY+ NKALI++LS+PAP S +LYF QY S TQCMACLWKQ+ SY RN
Sbjct: 1142 DFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRN 1201
Query: 990 PHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPV 1049
P Y AVRF FT I+L+FGT+FWD+G K TK QDLFN MG MY AV F+GV+N +SVQPV
Sbjct: 1202 PPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPV 1261
Query: 1050 VDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFW 1109
V +ER+VFYRE+ AGMYS YAF QV+IEIPY VQA Y +IVYAMIGFEWTAAKFFW
Sbjct: 1262 VAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFW 1321
Query: 1110 FLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWS 1169
+LFFM F+LLYFTF+GMM V TPN+HIASIVS+ FY +WN+ SGF+IPR R+P+WWRW
Sbjct: 1322 YLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWY 1381
Query: 1170 YWANPIAWTLYGFFASQFGDVQDRLESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLF 1229
WA P+AWTLYG SQFGD++ +E G VK F+ +Y+GFKH +LG VA VV LF
Sbjct: 1382 CWACPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLF 1441
Query: 1230 AFVFALGIRVLNFQKR 1245
A +F I NFQKR
Sbjct: 1442 ASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1758 bits (4552), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 886/1274 (69%), Positives = 1030/1274 (80%), Gaps = 59/1274 (4%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPPGSGKTTL+LALAGKLDS+LK +GKVTYNGH++HEFVPQRTAAYISQHD+HIG
Sbjct: 193 MTLLLGPPGSGKTTLLLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIG 252
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETL FSARCQGVGSRY+ML ELSRREKAA I PDADID+FMKA EGQEA V+T
Sbjct: 253 EMTVRETLEFSARCQGVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVT 312
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DYILK+L LD+CADT+VGD+M+RGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 313 DYILKILGLDICADTMVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTT 372
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
+ IVNSL Q I+ GTALISLLQPAPE YNLFDDIIL+SDG IVY+GP E V +FF SM
Sbjct: 373 YSIVNSLKQSVRIMKGTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESM 432
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP+RKG ADFLQEVTS+KDQ+QYW+R DEPYRF+T KEF A+QSFHVGRK+ DEL
Sbjct: 433 GFKCPERKGAADFLQEVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELK 492
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
FDK SHPAALTT+KYG+GK++LLK C RE LLM+RNSFVY+F+ Q++ +A++ MT
Sbjct: 493 TTFDKSKSHPAALTTQKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMT 552
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
IF RTKM RDS DG IY+GALFF++ I FNG++E+ MT+ KLPVFYKQRD FYPSWA
Sbjct: 553 IFFRTKMPRDSAEDGGIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWA 612
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
YA+P+WILKIP++ EV +WVF+TYYV+GFD N GRFFKQ+LLLL+VNQM+SA+FR IAA
Sbjct: 613 YAIPSWILKIPVTFAEVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAA 672
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
VGR+M VA+TFG+ LLL F LGGF+L+R+D+K WW WGYW SPLMY+ NAI+VNEF G
Sbjct: 673 VGRTMGVASTFGAFALLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQ 732
Query: 541 SWKKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGT 600
WK I+ T+PLG V+ +RGFF DAYWYW+GVGAL GFI++F +++AL++LNPF
Sbjct: 733 KWKHIVAGGTEPLGAAVVRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDK 792
Query: 601 SKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETD 660
+A IS+ES++ + SS IT ++ D S+S++
Sbjct: 793 PQATISDESENN--------------ESESSPQITSTQEGD------SASEN-------- 824
Query: 661 QPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALM 720
K +GMVLPF+P S+TFDE+ YSVDMP EM+ G D++LVLL VSGAFRPGVLTALM
Sbjct: 825 --KKKGMVLPFDPHSITFDEVVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTALM 882
Query: 721 GVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 780
GV+G+GKTTLMDVLAGRKT GYI G+I ISGYPK Q+TF RISGYCEQNDIHSPYVTV+E
Sbjct: 883 GVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTVFE 942
Query: 781 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAV 840
SL+YSAWLRL +VN + R MFVEEVM+LVEL PLR ALVGLPGVNGLSTEQRKRLTIAV
Sbjct: 943 SLVYSAWLRLPQDVNEEKRMMFVEEVMDLVELTPLRSALVGLPGVNGLSTEQRKRLTIAV 1002
Query: 841 ELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA--- 897
ELVANPSIIFMDEPTSGLDARAAA+VMR VRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1003 ELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1062
Query: 898 -------------------------GIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFA 932
IPGVSKI +GYNPATWMLEVTA SQE+ALGVDF
Sbjct: 1063 MKRGGQEIYVGPLGRQSCHLIKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVDFT 1122
Query: 933 AIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHY 992
+YK S+LYR NKALI ELS P PG+ +L+F +++ F+TQCMACLWKQHWSY RNP Y
Sbjct: 1123 DLYKKSDLYRRNKALIDELSVPRPGTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNPAY 1182
Query: 993 TAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDL 1052
TAVR +FT FI+LIFGTMFWD+GTK ++ QDL N MG MY AV FLGV N SSVQPVV +
Sbjct: 1183 TAVRLIFTTFIALIFGTMFWDIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSV 1242
Query: 1053 ERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLF 1112
ER+VFYREK AGMYS + YAFAQVLIEIPYIFVQA Y LIVY+MIGFEWT AKFFW F
Sbjct: 1243 ERTVFYREKAAGMYSAIPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFF 1302
Query: 1113 FMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWA 1172
FMFF+ LYFTFFGMM VA TPN ++ASIV+ FY +WN+ SGFI+PR RIP+WWRW YW
Sbjct: 1303 FMFFTFLYFTFFGMMTVAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWG 1362
Query: 1173 NPIAWTLYGFFASQFGDVQDRL-ESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAF 1231
PIAWTLYG ASQFGD+QD L + +TV+QFLRS +GFKHDFLG VAAV+ +FAF
Sbjct: 1363 CPIAWTLYGLVASQFGDLQDPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAF 1422
Query: 1232 VFALGIRVLNFQKR 1245
FALGI+ NFQ+R
Sbjct: 1423 TFALGIKAFNFQRR 1436
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1750 bits (4533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 846/1274 (66%), Positives = 1001/1274 (78%), Gaps = 38/1274 (2%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPPGSGKTTL+LALAGKLD LK SGKVTYNGH MHEFVP+RTAAYISQHD+HIG
Sbjct: 186 MTLLLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIG 245
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETLAFSARCQGVG+RY+ML EL+RREKAA I PD DID++MKA GQE++V+T
Sbjct: 246 EMTVRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVT 305
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DYILK+L LD+CADTVVG+EMLRGISGGQRKRVTTGEMLVGPA ALFMDEISTGLDSSTT
Sbjct: 306 DYILKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 365
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
+ IVNSL Q HIL GTA+ISLLQPAPE YNLFDDIIL+SDGQ+VYQGP EHV +FF M
Sbjct: 366 YQIVNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFM 425
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GF+CP RKG+ADFLQEVTSRKDQ QYW R D PYRFV VK+F AF+SFHVGR + +EL
Sbjct: 426 GFRCPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELS 485
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
PFD+ SHPAAL T KYGV +KELLKA RE LLMKRN+F+YIF+ + +A+I MT
Sbjct: 486 EPFDRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMT 545
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
F RT M D G+IY GAL+F L T+ FNG AE++MT+ KLPVF+KQRDL F+P+WA
Sbjct: 546 TFFRTSMRHDR-DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWA 604
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
Y +P+WIL+IPI+ +EV V+VF+TYYVIGFD + RFFKQYLLLL +NQMSSA+FR IA
Sbjct: 605 YTIPSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAG 664
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
+GR MVV++TFG L LL LGGF+L+R D+KKWW WGYW SPL YAQNAI NEFLG+
Sbjct: 665 IGRDMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGH 724
Query: 541 SWKKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGT 600
SW +ILP + LG+ VL SRG FT+A WYW+G+GAL G+ +LF +T+ALS L+PF
Sbjct: 725 SWSQILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTD 784
Query: 601 SKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETD 660
S A +SE++ +H + TG V+ S + ++ +NS S +++
Sbjct: 785 SHASMSEDALKEKHANLTGEVVEGQKDTKSRK---QELELSHIADQNSGINSADSS---- 837
Query: 661 QPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALM 720
+GMVLPF P S++F+++ YSVDMP+ MK +G+ +D+L+LL GVSG+FRPGVLTALM
Sbjct: 838 -ASRKGMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALM 896
Query: 721 GVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 780
GV+G+GKTTLMDVLAGRKT GYI G+I ISGYPK QETF RISGYCEQNDIHSP+VTVYE
Sbjct: 897 GVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYE 956
Query: 781 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAV 840
SL++SAWLRL SEV+S+ R+MF+EEVM+LVEL LR ALVGLPGV+GLSTEQRKRLTIAV
Sbjct: 957 SLVFSAWLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAV 1016
Query: 841 ELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA--- 897
ELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTV+TGRTVVCTIHQPSIDIFEAFD
Sbjct: 1017 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFL 1076
Query: 898 -------------------------GIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFA 932
GI GVS+I+DGYNPATWMLEVT+ +QE LGVDF+
Sbjct: 1077 MKRGGEEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFS 1136
Query: 933 AIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHY 992
IY+ SELY+ NK LI+ELS P PGS +L F QY SF TQC+ACLWKQ+WSY RNP Y
Sbjct: 1137 EIYRQSELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSY 1196
Query: 993 TAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDL 1052
TAVR LFTI I+L+FGTMFW++GT+T KQQDLFN MG MY AV ++GV N SVQPVV +
Sbjct: 1197 TAVRLLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVV 1256
Query: 1053 ERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLF 1112
ER+VFYRE+ AGMYS YAF QV IE+PYI VQ Y ++VY+MIGFEWT AKF W+LF
Sbjct: 1257 ERTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLF 1316
Query: 1113 FMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWA 1172
FM+F+LLYFTF+GMM V TPN IA+I+S+ FY +WN+ SG++IPR +IPVWWRW W
Sbjct: 1317 FMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWI 1376
Query: 1173 NPIAWTLYGFFASQFGDVQDRLESG-ETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAF 1231
P+AWTLYG ASQFGD+Q LE TV QF+ Y+GF H+FL VA V V FAF
Sbjct: 1377 CPVAWTLYGLVASQFGDIQHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAF 1436
Query: 1232 VFALGIRVLNFQKR 1245
+F+ I NFQ+R
Sbjct: 1437 LFSFAIMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1744 bits (4516), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 858/1276 (67%), Positives = 1021/1276 (80%), Gaps = 44/1276 (3%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
M+LLLGPPGSGKT+L+LALAGKLDS+LK SG+VTYNGHDM EFVPQRT+AYI QHD+HIG
Sbjct: 182 MSLLLGPPGSGKTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIG 241
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETLAFSARCQGVG+RYDML ELSRREK A I PD DIDV+MKA+ EGQE+ V+T
Sbjct: 242 EMTVRETLAFSARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVT 300
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DYILK+L L++CADT+VGD M+RGISGGQ+KRVTTGEMLVGPA ALFMDEISTGLDSSTT
Sbjct: 301 DYILKILGLEICADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTT 360
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
+ IVNSL Q HIL GTALI+LLQPAPE Y+LFDDI+L+S+GQIVYQGP E++ +FF +M
Sbjct: 361 YQIVNSLRQSVHILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAM 420
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP+RKG+ADFLQEVTSRKDQ QYW R DEPYR+++V +F AF+ FHVGR LG EL
Sbjct: 421 GFKCPERKGVADFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELR 480
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
+PFD+ +HPAALTT +YG+ K EL KACFSRE LLMKRNSFVYIF++ Q++ L IGMT
Sbjct: 481 VPFDRTRNHPAALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMT 540
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+FLRTKMHR S+ DG I+ GA+F L T FNG AE++M+IAKLP+FYKQRDL FYPSWA
Sbjct: 541 VFLRTKMHRRSVEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWA 600
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
YALP W+LKIPIS +E +VW+ MTYYV+GFD N RFF+ Y+LL++++QM+S +FRL+AA
Sbjct: 601 YALPTWVLKIPISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAA 660
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
+GR MVVA+TFGS L+L VLGGF++SR++IKKWW WGYW SPLMYAQNAI VNEFLG+
Sbjct: 661 LGREMVVADTFGSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGH 720
Query: 541 SWKKIL-PNKTKP-LGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPF 598
SW K++ P ++ LG++VL RG F DA WYW+GVGAL G+I+LF F L L +L+P
Sbjct: 721 SWNKVVDPTQSNDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPL 780
Query: 599 GTSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIE 658
G +A +SEE +H +RTG V+L T S + S + + I
Sbjct: 781 GKGQAVVSEEELREKHVNRTGENVELLTLGTDSQN------------SPSDANAGRGEIT 828
Query: 659 TDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTA 718
+ RGMVLPF P S+TFD I YSVDMPQEMK +GV +D+L+LL GVSGAFRPGVLTA
Sbjct: 829 GADTRKRGMVLPFTPLSITFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTA 888
Query: 719 LMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTV 778
LMGV+G+GKTTLMDVLAGRKT GYI G+I+ISGYPK QETF RI+GYCEQNDIHSP+VTV
Sbjct: 889 LMGVSGAGKTTLMDVLAGRKTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTV 948
Query: 779 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTI 838
YESLLYSAWLRL SEV+S+ R+MFVEEVMELVEL LR ALVGLPGVNGLSTEQRKRLTI
Sbjct: 949 YESLLYSAWLRLPSEVDSEARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTI 1008
Query: 839 AVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-- 896
AVELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1009 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1068
Query: 897 --------------------------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVD 930
GI GV KI+DGYNPATWMLEVT +QE LG++
Sbjct: 1069 FLMKRGGEEIYVGPLGHNSCHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGIN 1128
Query: 931 FAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNP 990
FA +Y++S+LY+ NK LI ELS P PGS +L+F Q+ FFTQCMACLWKQH SY RNP
Sbjct: 1129 FAEVYRNSDLYQRNKTLISELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNP 1188
Query: 991 HYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVV 1050
YTA R FT I+LIFGT+F ++G K K+ DLFN++G MY AV F+G+ N +VQP+V
Sbjct: 1189 SYTATRIFFTTVIALIFGTIFLNLGKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQPIV 1248
Query: 1051 DLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWF 1110
D+ER+VFYREK AGMYS + YAFAQVLIEIP+IF+Q Y LIVY++IGF+WT KFFW+
Sbjct: 1249 DVERTVFYREKAAGMYSALPYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWY 1308
Query: 1111 LFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSY 1170
+FFMFF+ +YFTF+GMM VA TPN IA+IVST FY +WNI +GF+IPR RIP+WWRW
Sbjct: 1309 MFFMFFTFMYFTFYGMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYS 1368
Query: 1171 WANPIAWTLYGFFASQFGDVQDR-LESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLF 1229
WA P+AWTLYG ASQ+GD+ + LE GE V+ ++R Y+GF+HD+LG VA V +LF
Sbjct: 1369 WACPVAWTLYGLVASQYGDITNSTLEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAALF 1428
Query: 1230 AFVFALGIRVLNFQKR 1245
AFVFA I+V NFQ+R
Sbjct: 1429 AFVFAFSIKVFNFQRR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1739 bits (4504), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 859/1275 (67%), Positives = 1006/1275 (78%), Gaps = 41/1275 (3%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPPGSGKTTL+LALAG+L +K SG+VTYNGH M +FVPQRTAAYISQHD+HIG
Sbjct: 201 MTLLLGPPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIG 260
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETL+FSARCQGVGSR+DML ELSRREKAA I PDADID FMKA EGQE N+IT
Sbjct: 261 EMTVRETLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLIT 320
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DYILK+L LD+CADT+VGD+M+RGISGGQRKRVTTGEMLVGPA+ALFMDEISTGLDSSTT
Sbjct: 321 DYILKILGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 380
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
F IV SL Q HIL GTA+ISLLQPAPE Y+LFDDIIL+SDGQIVYQGP E V +FF M
Sbjct: 381 FQIVKSLRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELM 440
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP+RKG+ADFLQEVTSRKDQ+QYW+++D+PYR+V VK+F AFQSFH G+ + +EL
Sbjct: 441 GFKCPERKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELA 500
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
PFDK +HPAALTT +YGV ELLKA RE LLMKRNSFVYIFR Q+M ++ I MT
Sbjct: 501 TPFDKSKNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMT 560
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+F RTKMHRDS+TDGVI+ GALFF + I FNG++E+ +TI KLPVF+KQRDL F+P+W
Sbjct: 561 VFFRTKMHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWT 620
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
Y +P+WILKIP+S +EV +VFM+YYVIGFD +AGRFFKQYLL+L +NQM++A+FR +
Sbjct: 621 YTIPSWILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGG 680
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
R+M+VAN FGS +LL+ VLGGF+L R+ +KKWW WGYW SP+MYAQNAI VNEFLG+
Sbjct: 681 AARNMIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGH 740
Query: 541 SWKKILPN--KTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPF 598
SW K+L N + LG++ L SRG F +A WYW+G GAL GFI+LF FTLAL++L P+
Sbjct: 741 SWDKVLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPY 800
Query: 599 GTSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIE 658
G S+ +SEE + + G + + T A+S++ V +SS+ +
Sbjct: 801 GKSQPSVSEEELKEKQANINGNVLDVDTMASSTNLAI-------VDNTETSSE----IAD 849
Query: 659 TDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTA 718
QP RGMVLPF P SLTFD I YSVDMPQEMK G+ +D+L LL GVSG+FRPGVLTA
Sbjct: 850 NSQPTQRGMVLPFAPLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTA 909
Query: 719 LMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTV 778
LMGV+G+GKTTLMDVLAGRKT GYI GNITISGYPK QETF R+SGYCEQNDIHSP VTV
Sbjct: 910 LMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTV 969
Query: 779 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTI 838
ESLL+SAWLRL +V+S TR+MF+EEVMELVEL PLR ALVGLPGVNGLSTEQRKRLTI
Sbjct: 970 SESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTI 1029
Query: 839 AVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-- 896
AVELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1030 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1089
Query: 897 --------------------------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVD 930
GI GVS+I+DGYNPATWMLEV+ SQE ALGVD
Sbjct: 1090 FLMKRGGEEIYVGPLGHQSSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVD 1149
Query: 931 FAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNP 990
F IY+ SEL++ NKALIQELS P PGS ELYF +Y LSF QC+ACLWK H SY RNP
Sbjct: 1150 FCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNP 1209
Query: 991 HYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVV 1050
Y A+R FT I+L+FGT+FWD+G KT K QDLFN MG MY AV F+GVLN SVQPVV
Sbjct: 1210 PYNAIRLFFTTVIALLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVV 1269
Query: 1051 DLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWF 1110
+ER+VFYRE+ AGMYS YAF QV IE PY VQ+ Y +IVY+MIGF+WTAAKFFW+
Sbjct: 1270 SVERTVFYRERAAGMYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWY 1329
Query: 1111 LFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSY 1170
LFFMFF+ LYFTF+GMM V TP++H+ASIVS+ FYG+WN+ SGFIIPR ++P+WWRW
Sbjct: 1330 LFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYC 1389
Query: 1171 WANPIAWTLYGFFASQFGDVQDRLESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFA 1230
W P+AWTLYG ASQFGD+ ++ G VK F+ +Y+ FKH +LG VA V+ LFA
Sbjct: 1390 WICPVAWTLYGLVASQFGDIMTPMDDGTPVKIFVENYFDFKHSWLGVVAVVIVAFTMLFA 1449
Query: 1231 FVFALGIRVLNFQKR 1245
F+F I LNFQKR
Sbjct: 1450 FLFGFAIMKLNFQKR 1464
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1724 bits (4466), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 839/1275 (65%), Positives = 988/1275 (77%), Gaps = 42/1275 (3%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPPGSGKTT +LALAG+L LK SG+VTYNGH M +FVPQRTAAYISQHD+HIG
Sbjct: 206 MTLLLGPPGSGKTTFLLALAGRL-KDLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIG 264
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETL+FSARCQGVGSR+DML EL+RREKAA I PDAD+D FMKA EGQE+N+IT
Sbjct: 265 EMTVRETLSFSARCQGVGSRFDMLTELTRREKAANIKPDADVDAFMKASAMEGQESNLIT 324
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DYILK+L L++CADT+VGD+M+RGISGGQRKRVTTGEMLVGPA+A FMDEISTGLDSSTT
Sbjct: 325 DYILKILGLEICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTT 384
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
F IV SL Q HIL GTA+ISLLQPAPE Y+LFDDIIL+SDG IVYQGP E+V +FF M
Sbjct: 385 FQIVKSLRQTIHILGGTAVISLLQPAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELM 444
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP+RKG+ADFLQEVTSRKDQ+QYW ++D+PYR+V +KEF AFQSFH GR + +EL
Sbjct: 445 GFKCPERKGVADFLQEVTSRKDQKQYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELA 504
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
PFDK SHPAALTT +YGV ELLKA RE LL+KRNSFVYIFR Q+M ++ + MT
Sbjct: 505 TPFDKSKSHPAALTTSRYGVSAMELLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMT 564
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+F RTKMHRDS+ DGVI+ GALFF + I NG++E+ +TI KLPVF+KQRDL F+P+W
Sbjct: 565 VFFRTKMHRDSVADGVIFMGALFFAVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWT 624
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
Y +P+WILK P+S +EV + FM+YYVIGFD N GRFFKQYLL+L V+QM++A+FR +
Sbjct: 625 YTIPSWILKSPMSFIEVGGFCFMSYYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGG 684
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
R+++VAN FGS +LL+ VLGGF+L+RD + KWW WGYW SP+MYAQNA+ VNEFLG+
Sbjct: 685 AARNLIVANVFGSFMLLIFMVLGGFILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGH 744
Query: 541 SWKKILPNK--TKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPF 598
SW K+L N + LG++ L SRG F +A WYW+G GAL GFI+LF FTLAL++L P
Sbjct: 745 SWDKVLNNSLSNETLGVQALMSRGIFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPD 804
Query: 599 GTSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIE 658
G S+ ISEE + + G + + T A+S++ S+ + +
Sbjct: 805 GKSQPSISEEELKEKQANINGNVLDVDTMASSNNLAIVG-----------STGTGSEIAD 853
Query: 659 TDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTA 718
QP RGMVLPF P SLTF++I YSVDMPQEMK G+ +D+L LL GVSG FRPGVLTA
Sbjct: 854 NSQPTQRGMVLPFTPLSLTFEDIKYSVDMPQEMKAHGIVEDRLELLKGVSGCFRPGVLTA 913
Query: 719 LMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTV 778
LMGV+G+GKTTLMDVLAGRKT GYI GNI+ISGYPK QETF R+SGYCEQNDIHSP VTV
Sbjct: 914 LMGVSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQETFARVSGYCEQNDIHSPQVTV 973
Query: 779 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTI 838
ESLL+SAWLRL +V+S TR+MF+EEVMELVEL PLR ALVGLPGVNGLS EQRKRLTI
Sbjct: 974 SESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSIEQRKRLTI 1033
Query: 839 AVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA- 897
AVELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTV+TGRTVVCTIHQPSIDIFEAFD
Sbjct: 1034 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDEL 1093
Query: 898 ---------------------------GIPGVSKIRDGYNPATWMLEVTAPSQEIALGVD 930
GI GVSKI DGYNPATWMLEVT SQE AL VD
Sbjct: 1094 FLMKRGGEEIYVGPLGHHSSELIKYFEGIQGVSKITDGYNPATWMLEVTTVSQEQALDVD 1153
Query: 931 FAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNP 990
F IY+ SEL++ NKALIQELS P PGS ELYF QY SF QC+ACLWKQH SY RNP
Sbjct: 1154 FCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTQYSQSFLIQCLACLWKQHLSYWRNP 1213
Query: 991 HYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVV 1050
Y A+R FT I+LIFGT+FWD+G K + QDLFN MG MY AV F+GVLN SVQPVV
Sbjct: 1214 PYNAIRLFFTTVIALIFGTIFWDLGGKMGQSQDLFNAMGSMYAAVLFIGVLNGQSVQPVV 1273
Query: 1051 DLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWF 1110
+ER+VFYRE+ AGMYS + YAF QV IE PY VQ+ YS+IVY+MIGF+WT AKFFW+
Sbjct: 1274 SVERTVFYRERAAGMYSALPYAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQWTVAKFFWY 1333
Query: 1111 LFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSY 1170
LFFMFF+LLYFTF+GMM V TP++H+ASIVS+ FY +WN+ +GF+I R PVWWRW
Sbjct: 1334 LFFMFFTLLYFTFYGMMAVGLTPSYHVASIVSSAFYAIWNLFTGFVISRPATPVWWRWYC 1393
Query: 1171 WANPIAWTLYGFFASQFGDVQDRLESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFA 1230
W P+AWTLYG SQ+GD+ ++ G V F+ +Y+ FKH +LG VA V+ LFA
Sbjct: 1394 WICPVAWTLYGLIVSQYGDIVTPMDDGIPVNVFVENYFDFKHSWLGFVAVVIVAFTMLFA 1453
Query: 1231 FVFALGIRVLNFQKR 1245
F+F I LNFQKR
Sbjct: 1454 FLFGFAIMKLNFQKR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1709 bits (4425), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 848/1274 (66%), Positives = 1002/1274 (78%), Gaps = 47/1274 (3%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPPG+GKTTL+LALAGKLD++LK +G VTYNGH MHEFVPQRT+AYISQHD+HIG
Sbjct: 186 MTLLLGPPGAGKTTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIG 245
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETLAFS+RCQGVG+RY+ML ELSRREK A I PD D+DV+MKAV EGQE+ V+T
Sbjct: 246 EMTVRETLAFSSRCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VVT 304
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DYILK+L LD+CADT+VGD M+RGISGGQ+KRVTTGEMLVGP+ ALFMDEISTGLDSSTT
Sbjct: 305 DYILKILGLDICADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTT 364
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
F IVNSL Q HIL GTALI+LLQPAPE Y+LFDDI+L+SDGQIVYQGP E+V +FF SM
Sbjct: 365 FQIVNSLRQSVHILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESM 424
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP+RKG+ADFLQEVTSRKDQ+QYWVR +EPYRFV V EF AF+SFHVG KL +EL
Sbjct: 425 GFKCPERKGVADFLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELS 484
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
PFD+ +HPAALTT KYG+ K ELLKAC RE LLMKRNSFVYIF++ Q++ LA+I MT
Sbjct: 485 TPFDRSRNHPAALTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMT 544
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+F RTK+ R+ L D I+ GA+F L T FNG AE++M+IAKLPVFYKQRDL FYP WA
Sbjct: 545 VFFRTKLPRNGLEDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWA 604
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
YALP WILKIPIS VE VW+ MTYYVIGFD N R F+ YLLL++++Q++S +FRL+AA
Sbjct: 605 YALPTWILKIPISFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAA 664
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
VGR MVVA+TFG+ L+L VLGGF+++R+ IKK+W WGYW SPLMYAQNAI VNEFLG+
Sbjct: 665 VGRDMVVADTFGAFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGH 724
Query: 541 SWKKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGT 600
SW K++ + LG L +RG F D WYW+GVGAL G+++LF F F L L +L+P G
Sbjct: 725 SWNKLVDATGQTLGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGK 784
Query: 601 SKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETD 660
+ +SEE+ + +RTG V+L+T R ++S I D
Sbjct: 785 GQTTVSEEALQEKEANRTGANVELAT-----------------RGSAATSDGGSVEIRKD 827
Query: 661 QPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALM 720
+ +GMVLPF P S+TFD + YSVDMPQEMK RGV +DKL+LL GVSGAFRPGVLTALM
Sbjct: 828 GNRKKGMVLPFTPLSITFDNVKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALM 887
Query: 721 GVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 780
GV+G GKTTLMDVLAGRKT GYI G+I ISGYPKNQETF RISGYCEQNDIHSP+VTVYE
Sbjct: 888 GVSGRGKTTLMDVLAGRKTGGYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVYE 947
Query: 781 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAV 840
SLLYSAWLRL +EV+ K R+MFV+EVM+LVELN LR +LVGLPGV GLSTEQRKRLTIAV
Sbjct: 948 SLLYSAWLRLPAEVDEKQRKMFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAV 1007
Query: 841 ELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD---- 896
ELVANPSIIFMDEPTSGLDARAAA+VMR VRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1008 ELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1067
Query: 897 ------------------------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFA 932
I GV KI++ YNPATWMLEVT SQE LG++FA
Sbjct: 1068 MKRGGEEIYVGPLGRQSSHLIKYFESIDGVKKIKERYNPATWMLEVTTISQEEILGLNFA 1127
Query: 933 AIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHY 992
+Y++S+LY+ NK LI+ELS P PGSK+L+FA Q+ SF QC+ACLWKQH SY RNP Y
Sbjct: 1128 EVYRNSDLYKRNKDLIKELSTPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSYWRNPSY 1187
Query: 993 TAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDL 1052
TA R FT+ I+LIFGT+FWD+G K + DL N MG MY AV F+G+ N +VQP+VD+
Sbjct: 1188 TATRLFFTVVIALIFGTIFWDLGKKRSTSLDLINAMGSMYAAVLFIGIQNAQTVQPIVDV 1247
Query: 1053 ERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLF 1112
ER+VFYREK AGMYS + YA+AQVLIE+P+I VQ Y L+VY+MIGF+WTAAKF W++F
Sbjct: 1248 ERTVFYREKAAGMYSALPYAYAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWYMF 1307
Query: 1113 FMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWA 1172
FMFF+ LYFT++GMM VA TPN IA+IV+ FY +WNI +GFIIPR RIP+WWRW YWA
Sbjct: 1308 FMFFTFLYFTYYGMMAVAMTPNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWA 1367
Query: 1173 NPIAWTLYGFFASQFGDVQDRL-ESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAF 1231
P+AWTLYG SQFG+ D + + ETVK FLR + GF+HDFL V +V V LFA
Sbjct: 1368 CPVAWTLYGLVVSQFGEYTDTMSDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFAS 1427
Query: 1232 VFALGIRVLNFQKR 1245
+FA I+ LNFQ+R
Sbjct: 1428 IFAFSIKTLNFQRR 1441
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1245 | ||||||
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.979 | 0.853 | 0.715 | 0.0 | |
| 255572799 | 1443 | ATP-binding cassette transporter, putati | 0.987 | 0.852 | 0.708 | 0.0 | |
| 224054164 | 1424 | pleiotropic drug resistance, ABC transpo | 0.972 | 0.850 | 0.721 | 0.0 | |
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.996 | 0.394 | 0.731 | 0.0 | |
| 255546581 | 1449 | ATP-binding cassette transporter, putati | 0.993 | 0.853 | 0.701 | 0.0 | |
| 297743360 | 1451 | unnamed protein product [Vitis vinifera] | 0.995 | 0.853 | 0.725 | 0.0 | |
| 147816688 | 1471 | hypothetical protein VITISV_022715 [Viti | 0.996 | 0.843 | 0.718 | 0.0 | |
| 359482652 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.977 | 0.853 | 0.724 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.978 | 0.853 | 0.691 | 0.0 | |
| 359482991 | 1445 | PREDICTED: pleiotropic drug resistance p | 0.995 | 0.857 | 0.721 | 0.0 |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1893 bits (4904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 911/1273 (71%), Positives = 1049/1273 (82%), Gaps = 53/1273 (4%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPP SGKTTL+LALAGKLD LK SG+VTYNGH+M+EFVPQRTAAYISQHD HIG
Sbjct: 182 MTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTHIG 241
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETLAF+ARCQGVG RY+M+ EL RREKA+ I PD DIDVFMKA+ EGQEANV+T
Sbjct: 242 EMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANVVT 301
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DYILK+L L+VCAD +VG+EMLRG+SGGQRKRVTTGEMLVGPA ALFMDEISTGLDSSTT
Sbjct: 302 DYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSSTT 361
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
+ IVNS+ Q+ HILNGTA+ISLLQP PE YNLFDDIIL+SDGQIVYQGP E+V +FF M
Sbjct: 362 YQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFEYM 421
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP+RKG+ADFLQEVTSRKDQ QYW D+PY FVTV+EF AFQSF VGR+L EL
Sbjct: 422 GFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAELS 481
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
PFDK SHPAALTT+KYGVGK ELLKACFSRE LLMKRNSFVYIF+LTQ+ +A++ MT
Sbjct: 482 TPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVAMT 541
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+FLRT+MHRDS+T+G IY GALFF + I FNG++EIS+TIAKLPVFYKQR L FYP WA
Sbjct: 542 LFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPPWA 601
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
++LP WI KIPI++V+V++WVF+TYYVIGFD N GRFFKQYLLL +V+QM+S +FR IAA
Sbjct: 602 FSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFIAA 661
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
GR+M+VANTFGS LL LF LGGF+LSRD+IKKWW WGYW SPLMY QNAIVVNEFLGN
Sbjct: 662 AGRNMIVANTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFLGN 721
Query: 541 SWKKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGT 600
SW K+LP+ T+ LGI+VL+SRGFFT AYWYW+GVGAL GF +L+ F FTLAL+FL P
Sbjct: 722 SWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPLQK 781
Query: 601 SKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETD 660
+A ISE+S S +TG +QLS+ E +E +
Sbjct: 782 PQAVISEDSASNT-SGKTGEVIQLSSVRT------------------------ELIVEEN 816
Query: 661 QPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALM 720
K +GMVLPFEP S+TF++I YSVDMPQEMKR+G +D+L LL GVSGAFRPGVLTALM
Sbjct: 817 HQKQKGMVLPFEPHSITFNDIRYSVDMPQEMKRQGATEDRLELLRGVSGAFRPGVLTALM 876
Query: 721 GVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 780
GV+G+GKTTLMDVLAGRKT GYI G+I ISG+PK QETF RISGYCEQNDIHSP+VTVYE
Sbjct: 877 GVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPHVTVYE 936
Query: 781 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAV 840
SLLYS+WLRL EVNS+TR+MF+EEVMELVEL PLRQALVGLPGV+GLSTEQRKRLTIAV
Sbjct: 937 SLLYSSWLRLPPEVNSETRKMFIEEVMELVELTPLRQALVGLPGVSGLSTEQRKRLTIAV 996
Query: 841 ELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA--- 897
ELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 997 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1056
Query: 898 -------------------------GIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFA 932
I GV I+DGYNPATWMLEV++ +QE+ LG+DFA
Sbjct: 1057 MKRGGQEIYVGPLGRHSCQLIKYFEAIEGVPDIKDGYNPATWMLEVSSSAQEMVLGLDFA 1116
Query: 933 AIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHY 992
AIYK+SELYR NKALI+ELS P GS +LYF QY SFFTQCMACLWKQHWSY RNP Y
Sbjct: 1117 AIYKNSELYRRNKALIEELSTPPLGSNDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPY 1176
Query: 993 TAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDL 1052
TAVRFLFT I+L+FGTMFWD+G+KTTK+QDLFN MG MY A+ FLG+ N SSVQPVV +
Sbjct: 1177 TAVRFLFTTVIALMFGTMFWDLGSKTTKRQDLFNAMGSMYAAIVFLGIQNASSVQPVVAV 1236
Query: 1053 ERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLF 1112
ER+VFYRE+ AGMYSP+ YAFAQV+IE+PYIF+QAA Y LIVYAMIGFEW+AAKFFW+LF
Sbjct: 1237 ERTVFYRERAAGMYSPLPYAFAQVVIELPYIFLQAAVYGLIVYAMIGFEWSAAKFFWYLF 1296
Query: 1113 FMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWA 1172
FM+F+LL++T++GMM VA TPN +ASIVS+ FY +WN+ SGFIIPR RIPVWWRW W
Sbjct: 1297 FMYFTLLFYTYYGMMAVAVTPNQQVASIVSSAFYSIWNLFSGFIIPRPRIPVWWRWYAWT 1356
Query: 1173 NPIAWTLYGFFASQFGDVQDRLESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFV 1232
P+A+TLYG +SQFGD++ LESGETV+ F+RSY+ FKH+ LGAVAA VF +LFAF
Sbjct: 1357 CPVAYTLYGLVSSQFGDIKHTLESGETVEDFVRSYFDFKHELLGAVAAAVFGFATLFAFT 1416
Query: 1233 FALGIRVLNFQKR 1245
FA I+ NFQ+R
Sbjct: 1417 FAFSIKFFNFQRR 1429
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572799|ref|XP_002527332.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223533332|gb|EEF35084.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1890 bits (4897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 904/1276 (70%), Positives = 1042/1276 (81%), Gaps = 46/1276 (3%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPP SGKTTL+LALAGKLD +LK SG VTYNGH M+EF+PQ TAAYISQHD+HIG
Sbjct: 183 MTLLLGPPSSGKTTLLLALAGKLDPNLKFSGNVTYNGHGMNEFIPQSTAAYISQHDLHIG 242
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETL+FS RCQGVG+R DMLVELSRREKAA I PD DIDVFMKAV EGQE NV+T
Sbjct: 243 EMTVRETLSFSVRCQGVGTRNDMLVELSRREKAANIKPDPDIDVFMKAVATEGQETNVVT 302
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DY+LK+L L+VCADT+VGDEMLRGISGGQRKRVTTGEMLVGPA ALFMDEISTGLDSSTT
Sbjct: 303 DYVLKILGLEVCADTLVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 362
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
+ IVNSL Q HIL+GTA+ISLLQPAPE Y+LFDDIIL+SDGQIVYQGP EHV +FF M
Sbjct: 363 YQIVNSLKQTIHILDGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREHVLEFFEYM 422
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP+RKG+ADFLQEVTS+ DQ+QYWV+ D+PY FVTV+EF AFQS+ VG+ +G EL
Sbjct: 423 GFKCPERKGVADFLQEVTSKNDQKQYWVQKDQPYSFVTVQEFSEAFQSYDVGQIIGQELS 482
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
PFDK SHPAAL RKYGV K ELLKACF+RE+LLMKRNSFVYIF+LTQ++ +A+I MT
Sbjct: 483 TPFDKSKSHPAALAARKYGVDKMELLKACFAREYLLMKRNSFVYIFKLTQLVVMAIISMT 542
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+FLRT+MHR+ LTD +Y GALFF L I FNGM+E+SMTIAKLPVFYKQRDL+FYP WA
Sbjct: 543 LFLRTEMHREDLTDAGVYLGALFFSLIAIMFNGMSELSMTIAKLPVFYKQRDLQFYPPWA 602
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
YALP WILKIPI+ EV VWVF+TYYVIGFD N R FKQY LLLIVNQM+S +FR IAA
Sbjct: 603 YALPTWILKIPITFFEVGVWVFITYYVIGFDPNVERLFKQYFLLLIVNQMASGLFRFIAA 662
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
VGR+M+VANTFGS LL +F LGG VLSRDDIKKWW WGYW SP+MY QNA+V NEFLG
Sbjct: 663 VGRNMIVANTFGSFALLTVFALGGIVLSRDDIKKWWTWGYWISPMMYGQNALVANEFLGE 722
Query: 541 SWKKILPNKTK--PLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPF 598
SW + N T LG++ + SRGFF AYWYW+G+GALTGF ILF FTLAL+ LNP+
Sbjct: 723 SWNHVPANSTSTDSLGVQFIKSRGFFPHAYWYWIGIGALTGFTILFNLCFTLALTHLNPY 782
Query: 599 GTSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIE 658
A IS+E E RTGG +QLS N SSH T +E+ +R T E
Sbjct: 783 EKPHAVISDEP---ERSDRTGGAIQLS--QNGSSHRTITENGVGIR----------MTDE 827
Query: 659 TDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTA 718
+Q K +GMVLPFEP S+TF+++ YSVDMPQEMK +G+ DDKLVLL GVSGAF+PGVLTA
Sbjct: 828 ANQNKKKGMVLPFEPHSITFNDVMYSVDMPQEMKSQGIADDKLVLLKGVSGAFKPGVLTA 887
Query: 719 LMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTV 778
LMGV+G+GKTTLMDVLAGRKT GYI G+I ISGYPK Q+TF RISGYCEQNDIHSP+VTV
Sbjct: 888 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQDTFARISGYCEQNDIHSPHVTV 947
Query: 779 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTI 838
YESL+YSAWLRL+ EV+ +TR+MFV EVMELVELNPLRQALVGLPGVNGLSTEQRKRLTI
Sbjct: 948 YESLIYSAWLRLAPEVDPETRKMFVNEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTI 1007
Query: 839 AVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-- 896
+VELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSID+FEAFD
Sbjct: 1008 SVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDLFEAFDEL 1067
Query: 897 --------------------------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVD 930
I G SK++DGYNPATWMLEVT+ +QE++LGVD
Sbjct: 1068 FLMKRGGEEIYVGPLGRHSCHMIDYFEVIEGASKVKDGYNPATWMLEVTSSAQELSLGVD 1127
Query: 931 FAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNP 990
FA IYK+SELYR NKA+I+ELS PGSK+LYF QY SF TQC+ACLWKQ SY RNP
Sbjct: 1128 FATIYKNSELYRRNKAIIKELSTSVPGSKDLYFPTQYSQSFLTQCIACLWKQRLSYWRNP 1187
Query: 991 HYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVV 1050
YTAVRFLFT FI+L+FGTMFWD+G+KT QQD+FN+ G MY AV FLG N +SVQPVV
Sbjct: 1188 PYTAVRFLFTTFIALMFGTMFWDLGSKTRTQQDIFNSAGSMYAAVVFLGTQNAASVQPVV 1247
Query: 1051 DLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWF 1110
+ER+VFYRE+ AGMYS + YA+AQVL+EIPYIF QA Y L+ Y+MIGFEWTAAKFFW+
Sbjct: 1248 AIERTVFYRERAAGMYSALPYAYAQVLVEIPYIFAQAVVYGLLTYSMIGFEWTAAKFFWY 1307
Query: 1111 LFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSY 1170
+FFM+F+L+YFT++GMM VA TPNHHIAS+VS+ FYG+WN+ SGFI+PRTR+PVWWRW Y
Sbjct: 1308 IFFMYFTLMYFTYYGMMAVAVTPNHHIASVVSSAFYGIWNLFSGFIVPRTRMPVWWRWYY 1367
Query: 1171 WANPIAWTLYGFFASQFGDVQDRLESG-ETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLF 1229
W P++WTLYG SQF D++D E G +TV+ F+R YYG +HDFLG VAAV+ LF
Sbjct: 1368 WVCPVSWTLYGLIGSQFSDIKDAFEGGSQTVEDFVREYYGIRHDFLGVVAAVIVGTTVLF 1427
Query: 1230 AFVFALGIRVLNFQKR 1245
AF+FA+ I+ NFQ+R
Sbjct: 1428 AFIFAVSIKSFNFQRR 1443
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054164|ref|XP_002298123.1| pleiotropic drug resistance, ABC transporter family protein [Populus trichocarpa] gi|222845381|gb|EEE82928.1| pleiotropic drug resistance, ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1884 bits (4879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 919/1274 (72%), Positives = 1050/1274 (82%), Gaps = 63/1274 (4%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPP SGKTTL+LALAGKLD +LK SG+VTYNGH+M EFVPQRTAAYISQHD+HIG
Sbjct: 185 MTLLLGPPSSGKTTLLLALAGKLDHALKFSGRVTYNGHEMDEFVPQRTAAYISQHDLHIG 244
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETLAFSARCQGVGSRYDML ELSRREK A I PD DIDVFMKA EGQE +V+
Sbjct: 245 EMTVRETLAFSARCQGVGSRYDMLAELSRREKEAGIKPDPDIDVFMKAAATEGQEDSVVI 304
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DYILKVL L+VCADT+VGDEMLRGISGGQ+KRVTTGEMLVGPA ALFMDEISTGLDSSTT
Sbjct: 305 DYILKVLGLEVCADTLVGDEMLRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTT 364
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
+ IVNS+ Q+ IL GTALISLLQPAPE Y+LFDDIIL+SDG+IVYQGP EHV +FF M
Sbjct: 365 YQIVNSIKQYVQILEGTALISLLQPAPETYDLFDDIILLSDGEIVYQGPREHVLRFFEYM 424
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP RKG+ADFLQEVTSRKDQ QYW R D PYRFVTVKEF AF SFH G++LG+EL
Sbjct: 425 GFKCPARKGVADFLQEVTSRKDQMQYWARRDVPYRFVTVKEFAEAFYSFHEGKRLGNELA 484
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
+PFDK +HPAALTT+KYGV K+EL KA FSRE LLMKRNSFVY F+ Q+ +AVI MT
Sbjct: 485 VPFDKSKNHPAALTTKKYGVNKRELCKASFSREFLLMKRNSFVYAFKFIQLTIVAVIAMT 544
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+FLRT+MHRDS+TDG IY GA+FFI+ I FNGMAEISMT+AKLPVFYKQRDL F+P+W
Sbjct: 545 LFLRTEMHRDSVTDGGIYVGAMFFIVVVIMFNGMAEISMTLAKLPVFYKQRDLLFFPAWI 604
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
YALP WILKIPI+ +EV++ VF+TY+VIGFD N GR FK YL+LL+ NQM+S +FR IAA
Sbjct: 605 YALPTWILKIPITFIEVAIMVFITYFVIGFDPNVGRLFKHYLVLLLTNQMASGLFRTIAA 664
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
VGR+MVVANTFGS VLLLLFVLGGFVLSRDDIKKWW WG+W SP+MYAQNA+VVNEFLG
Sbjct: 665 VGRNMVVANTFGSFVLLLLFVLGGFVLSRDDIKKWWIWGFWTSPMMYAQNAVVVNEFLGK 724
Query: 541 SWKKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGT 600
SW +LPN T+PLGIEVL SRGFFT+AYWYWL V AL GF +L+ F + LAL+FLNP G
Sbjct: 725 SWNHVLPNSTEPLGIEVLKSRGFFTEAYWYWLAVAALFGFTLLYNFLYILALAFLNPLGK 784
Query: 601 -SKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIET 659
+A ISEE QS N+ I RS+S SR T
Sbjct: 785 PQQAGISEEPQS-----------------NNVDEIGRSKS------------SRFTC--- 812
Query: 660 DQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTAL 719
K RG+++PFEP S+TFD++ YSVDMPQEMK GVH+DKLVLL GVSGAFRPGVLTAL
Sbjct: 813 --NKQRGVIIPFEPHSITFDKVMYSVDMPQEMKSHGVHEDKLVLLKGVSGAFRPGVLTAL 870
Query: 720 MGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVY 779
MG++G+GKTT+MDVLAGRKT GYI GNITISGYPK QETF RISGYCEQNDIHSP++TVY
Sbjct: 871 MGISGAGKTTMMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHITVY 930
Query: 780 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIA 839
ESLLYSAWLRL +EV+ +TR+MFVEEVMELVELNPLRQALVGLPGV+GLSTEQRKRLTIA
Sbjct: 931 ESLLYSAWLRLPTEVDIETRKMFVEEVMELVELNPLRQALVGLPGVDGLSTEQRKRLTIA 990
Query: 840 VELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD--- 896
VELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 991 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1050
Query: 897 -------------------------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDF 931
GI GV+KI+DGYNPATWMLEVT+ ++E+ALGVDF
Sbjct: 1051 LLKRGGQEIYVGPLGRLSCHLIKYFEGIEGVNKIKDGYNPATWMLEVTSTAEELALGVDF 1110
Query: 932 AAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPH 991
A IY+SSEL+R N+ALI++LS PAPGSK+LYF+ QY SFFTQC+ACLWKQHWSY RNP
Sbjct: 1111 AEIYRSSELFRRNRALIKDLSTPAPGSKDLYFSTQYSRSFFTQCLACLWKQHWSYWRNPP 1170
Query: 992 YTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVD 1051
YTA+RFL T I LIFGTMFWD+G+K TK+QDLFN MG MY AV FLGV N +SVQPVV
Sbjct: 1171 YTAIRFLSTTVIGLIFGTMFWDIGSKITKRQDLFNAMGSMYTAVLFLGVQNAASVQPVVA 1230
Query: 1052 LERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFL 1111
+ER+VFYRE+ AGMYS + YAFAQVLIE+PYIFVQAA Y +IVY+MIGF WT +KFFW+L
Sbjct: 1231 VERTVFYRERAAGMYSALPYAFAQVLIELPYIFVQAAVYGVIVYSMIGFGWTISKFFWYL 1290
Query: 1112 FFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYW 1171
+FM+F+LLYFTF+GMM VA +PNH IAS++S FYG+WN+ SGF+IPR+R+P+WWRW W
Sbjct: 1291 YFMYFTLLYFTFYGMMAVAVSPNHQIASVISAAFYGIWNVFSGFVIPRSRMPLWWRWYSW 1350
Query: 1172 ANPIAWTLYGFFASQFGDVQDRLESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAF 1231
P+ WTLYG ASQFGD++DRLE+GETV+QF+ Y FKHDFLG VAAV+ LFA
Sbjct: 1351 ICPVFWTLYGLVASQFGDMKDRLETGETVEQFVTIYLDFKHDFLGVVAAVILGFTVLFAI 1410
Query: 1232 VFALGIRVLNFQKR 1245
FA+ I++ NFQ+R
Sbjct: 1411 TFAISIKLFNFQRR 1424
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1883 bits (4878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 935/1279 (73%), Positives = 1058/1279 (82%), Gaps = 38/1279 (2%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPP SGKTTL+LAL+GKLDSSLK +GKVTYNGH M+EFVPQRTA YISQHD HIG
Sbjct: 1868 MTLLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIG 1927
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETLAFSARCQGVG RYDML ELSRREKAA I PD DIDVFMKAV EGQ+ NVIT
Sbjct: 1928 EMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAVATEGQKENVIT 1987
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DY LK+L L+VCADT+VGD+M+RGISGGQRKRVTTGEMLVGP+ ALFMDEISTGLDSSTT
Sbjct: 1988 DYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTT 2047
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
+ IVNSL Q HILNGTALISLLQPAPE Y+LFDDIIL+SD QIVYQGP E V FF SM
Sbjct: 2048 YQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESM 2107
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GF+CP+RKG+ADFLQEVTSRKDQ+QYW R DEPY FVTVKEF AFQSFH+GRKLG EL
Sbjct: 2108 GFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHELA 2167
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
PFDK SHPAAL T KYGV KKELL AC SRE+LLMKRNSFVYIF+LTQ++ +A I MT
Sbjct: 2168 TPFDKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISMT 2227
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
IFLRT+MH++S DG IYTGALFF + I FNGM+E++MTIAKLPVFYKQR L FYP+WA
Sbjct: 2228 IFLRTEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWA 2287
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
YALP+WILKIPI+ VEV+VWVFM+YYVIGFD N GR FKQYLLL++VNQM+SA+FR IAA
Sbjct: 2288 YALPSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAA 2347
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
GR+M+VANTFGS LLLLF LGGFVLSR+++KKWW WGYW SPLMYAQNAIVVNEFLG
Sbjct: 2348 AGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGK 2407
Query: 541 SW-KKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFG 599
SW K + T+ LG+ VL SRGFFT+AYWYW+G GAL GFI++F F +T+AL++LN F
Sbjct: 2408 SWSKNSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFE 2467
Query: 600 TSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRS-ESRDYVRRRNSSSQSR---ET 655
+A I+EES+ +S+TGG ++LS+ S T S E RD + R SS+ S E
Sbjct: 2468 KPQAVITEESE----NSKTGGKIELSSHRRGSIDQTASTERRDEIGRSISSTSSSVRAEA 2523
Query: 656 TIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGV 715
E + +GMVLPF+P S+TFD+I YSVDMP+EMK +GV +D+L LL GVSGAFRPGV
Sbjct: 2524 IAEARRNNKKGMVLPFQPLSITFDDIRYSVDMPEEMKSQGVLEDRLELLKGVSGAFRPGV 2583
Query: 716 LTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPY 775
LTALMGV+G+GKTTLMDVLAGRKT GYI GNI ISGYPK QETF RISGYCEQNDIHSP+
Sbjct: 2584 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFARISGYCEQNDIHSPH 2643
Query: 776 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 835
VT++ESLLYSAWLRL ++V+SKTR+MF+EEVMELVEL PL+ +LVGLPGVNGLSTEQRKR
Sbjct: 2644 VTIHESLLYSAWLRLPADVDSKTRKMFIEEVMELVELTPLKDSLVGLPGVNGLSTEQRKR 2703
Query: 836 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 895
LTIAVELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAF
Sbjct: 2704 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 2763
Query: 896 DA----------------------------GIPGVSKIRDGYNPATWMLEVTAPSQEIAL 927
D GI GVSKI+DGYNPATWMLEVT+ +QE L
Sbjct: 2764 DELLLLKRGGQEIYVGPLGRHSSHLIKYFQGIEGVSKIKDGYNPATWMLEVTSSAQEFLL 2823
Query: 928 GVDFAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYS 987
GVDF IYK+S+LYR NK LI+ELS+PAPGSK+LYF QY SFFTQCMACLWKQ SY
Sbjct: 2824 GVDFTEIYKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYW 2883
Query: 988 RNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQ 1047
RNP YTAVRF FT FI+LIFGTMFWD+GTK KQQDL N MG MY AV FLGV N SSVQ
Sbjct: 2884 RNPPYTAVRFFFTTFIALIFGTMFWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQNSSSVQ 2943
Query: 1048 PVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKF 1107
PVV +ER+VFYRE+ AGMYS M YAFAQ L+EIPY+F QA Y +IVYAMIGFEWTAAKF
Sbjct: 2944 PVVAVERTVFYRERAAGMYSAMPYAFAQALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKF 3003
Query: 1108 FWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWR 1167
FW+LFFMFF+LLYFTF+GMM VA TPN HIA+IV+ FYGLWN+ SGFI+PRTRIPVWWR
Sbjct: 3004 FWYLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWR 3063
Query: 1168 WSYWANPIAWTLYGFFASQFGDVQDRLE-SGETVKQFLRSYYGFKHDFLGAVAAVVFVLP 1226
W YWA P+AWTLYG SQFGD+QDR E +G+TV+Q+L Y+GF+HDFLG VAAV+
Sbjct: 3064 WYYWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFT 3123
Query: 1227 SLFAFVFALGIRVLNFQKR 1245
LF F+FA I+ NFQ+R
Sbjct: 3124 VLFLFIFAFAIKAFNFQRR 3142
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546581|ref|XP_002514350.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223546806|gb|EEF48304.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1879 bits (4868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 897/1279 (70%), Positives = 1044/1279 (81%), Gaps = 42/1279 (3%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPP SGKTTL+LALAGKL LK SG+VTYNGH M EFVPQRT+AYISQ+DIHIG
Sbjct: 179 MTLLLGPPSSGKTTLLLALAGKLTKDLKFSGRVTYNGHGMEEFVPQRTSAYISQYDIHIG 238
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETLAFSARCQGVGSRY+ML+EL+RREK A I PD DID++MKA EGQEANV+T
Sbjct: 239 EMTVRETLAFSARCQGVGSRYEMLMELARREKEANIKPDPDIDIYMKAAALEGQEANVVT 298
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DYILK+L L++CADT+VGDEM RGISGGQ+KRVTTGEMLVGPA ALFMDEISTGLDS+TT
Sbjct: 299 DYILKILGLELCADTLVGDEMARGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSTTT 358
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
F IVNSL Q HIL+GTALI+LLQPAPE + LFDDIIL+SDGQIVYQGP E+V FF M
Sbjct: 359 FQIVNSLRQSVHILSGTALIALLQPAPETFELFDDIILLSDGQIVYQGPRENVLDFFEYM 418
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP+RKG+ADFLQEVTSRKDQEQYW D+PY FV+V EF AFQSFH+GRKLGDEL
Sbjct: 419 GFKCPERKGVADFLQEVTSRKDQEQYWAHKDQPYLFVSVNEFSEAFQSFHIGRKLGDELA 478
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
PFDK +HP +LTT+KYGV KKEL KAC SRE+LLMKRNSFVYIF++TQ++ L I MT
Sbjct: 479 TPFDKSKAHPDSLTTKKYGVSKKELFKACISREYLLMKRNSFVYIFKMTQLIILGFITMT 538
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+FLRT+MHR++ TDG +Y GALFF +TTI FNG +E++MTI KLPVFYKQRDL FYPSWA
Sbjct: 539 LFLRTEMHRNTETDGGVYLGALFFTVTTIMFNGFSELAMTILKLPVFYKQRDLLFYPSWA 598
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
YALP WILKIPI+ VEV+VWV MTYYVIGFD N RFFKQYL+LLI NQM+SA+FRL AA
Sbjct: 599 YALPTWILKIPITFVEVAVWVVMTYYVIGFDPNIQRFFKQYLILLITNQMASALFRLTAA 658
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
+GR+++VANT G+ +L VLGGFV+SRD++KKWW WGYW SP+MY QNAI VNEFLG+
Sbjct: 659 LGRNIIVANTVGAFAMLTALVLGGFVISRDNVKKWWIWGYWFSPMMYVQNAISVNEFLGS 718
Query: 541 SWKKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGT 600
SW PN TKPLG+ +L SRG F +AYWYW+G GALTG+I LF F FTLAL +L+PFG
Sbjct: 719 SWNHFPPNSTKPLGVTLLKSRGLFPEAYWYWIGFGALTGYIFLFNFLFTLALKYLDPFGK 778
Query: 601 SKAFISEESQSTEHDSRTGGTVQLSTCAN------SSSHITRSESRDYVRRRNSSSQSRE 654
+A IS+E+ S + RTG ++LS+ S+SH S SR R +S S + E
Sbjct: 779 PQAIISKEAYSEKTAVRTGEFIELSSKEKNFQERGSASHRVAS-SRTSSARVSSLSNAFE 837
Query: 655 TTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPG 714
+ RGMVLPF+P S+TF ++ Y+V MPQEMK +G+ +D+L LL GVSGAFRPG
Sbjct: 838 NS-------KRGMVLPFQPLSITFADVRYAVQMPQEMKTQGITEDRLELLKGVSGAFRPG 890
Query: 715 VLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSP 774
VLTALMGV+G+GKTTLMDVLAGRKT GYI GNITISGYPK QETF RISGYCEQ DIHSP
Sbjct: 891 VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQTDIHSP 950
Query: 775 YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834
+VTVYESLLYSAWLRL EV+S TR MFVEEVMELVEL LR+ALVGLPGVNGLS EQRK
Sbjct: 951 HVTVYESLLYSAWLRLPPEVDSDTRNMFVEEVMELVELTSLREALVGLPGVNGLSVEQRK 1010
Query: 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 894
RLT+AVELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIF+A
Sbjct: 1011 RLTVAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDA 1070
Query: 895 FD----------------------------AGIPGVSKIRDGYNPATWMLEVTAPSQEIA 926
FD I G+ KI+DGYNPATWMLEVT +QE+A
Sbjct: 1071 FDELLLLKRGGEEIYVGPVGRHACHLIKYFEDIEGIPKIKDGYNPATWMLEVTTTAQEVA 1130
Query: 927 LGVDFAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSY 986
LGVDF+ IYK+SELYR NKALI+ELS+P PGSK+LYF QY SF TQCMACLWKQHWSY
Sbjct: 1131 LGVDFSDIYKNSELYRKNKALIKELSRPLPGSKDLYFPTQYSKSFTTQCMACLWKQHWSY 1190
Query: 987 SRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSV 1046
RNP YTAVR +F FI+L+FGT+FW +GTK +++QD+FN MG MY AV FLG N ++V
Sbjct: 1191 WRNPPYTAVRLVFATFIALMFGTIFWKLGTKRSRRQDIFNAMGSMYAAVLFLGFHNSTAV 1250
Query: 1047 QPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAK 1106
QPVV +ER+VFYRE+ AGMYS +AYAF QV+IE+PYI +Q Y +IVYAM+GFEWT +K
Sbjct: 1251 QPVVAIERTVFYRERAAGMYSALAYAFGQVMIEVPYILIQTIIYGVIVYAMVGFEWTISK 1310
Query: 1107 FFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWW 1166
FFW+LFFM+F+LLYFTF+GMM VA TPNH+IA+IVS+ FY +WNI SGFI+PRTRIP+WW
Sbjct: 1311 FFWYLFFMYFTLLYFTFYGMMNVAITPNHNIAAIVSSAFYAIWNIFSGFIVPRTRIPIWW 1370
Query: 1167 RWSYWANPIAWTLYGFFASQFGDVQDRLESGETVKQFLRSYYGFKHDFLGAVAAVVFVLP 1226
RW YWA PIAWTLYG ASQFGD+++ L++GETV+ FLRSY+GF+HDF+G VA V+ +
Sbjct: 1371 RWYYWACPIAWTLYGLVASQFGDIKEELDTGETVEHFLRSYFGFQHDFVGIVAVVLVGIC 1430
Query: 1227 SLFAFVFALGIRVLNFQKR 1245
LF F+FA IR NFQ+R
Sbjct: 1431 VLFGFLFAFSIRTFNFQRR 1449
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743360|emb|CBI36227.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1869 bits (4841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 927/1278 (72%), Positives = 1051/1278 (82%), Gaps = 39/1278 (3%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPP SGKTTL+LAL+GKLDSSLK +GKVTYNGH M+EFVPQRTA YISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIG 239
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETLAFSARCQGVG RYDML ELSRREKAA I PD DIDVFMKA EGQ+ NVIT
Sbjct: 240 EMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAAATEGQKENVIT 299
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DY LK+L L+VCADT+VGD+M+RGISGGQRKRVTTGEMLVGP+ ALFMDEISTGLDSSTT
Sbjct: 300 DYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTT 359
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
+ IVNSL Q HILNGTALISLLQPAPE Y+LFDDIIL+SD QIVYQGP E V FF SM
Sbjct: 360 YQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESM 419
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GF+CP+RKG+ADFLQEVTSRKDQ+QYW R DEPY FVTVK+F AFQSFH GRK+GDEL
Sbjct: 420 GFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKQFAEAFQSFHSGRKVGDELA 479
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
PFDK SHPAAL T KYGV KKELL AC SRE+ LMKRNSFVYI +LTQ++ +A I MT
Sbjct: 480 TPFDKTKSHPAALKTEKYGVRKKELLDACISREYWLMKRNSFVYILQLTQLIIMAAISMT 539
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
IFLRT+MH++S DG IY GALFF + I FNGM+E++MTIAKLPVFYKQR L FYP+WA
Sbjct: 540 IFLRTEMHKNSTDDGSIYMGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWA 599
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
YAL +WILKIPI+ VEV+VWVFM+YYVIGFD N GR FKQYLLL++VNQM+SA+FR IAA
Sbjct: 600 YALSSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAA 659
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
GR+M+VANTFGS LLLLF LGGFVLSR+++KKWW WGYW SPLMYAQNAIVVNEFLG
Sbjct: 660 AGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGK 719
Query: 541 SW-KKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFG 599
SW K N T+ LG+ VL SRGFFT+AYWYW+G GAL GFI++F F +T+AL++LN F
Sbjct: 720 SWSKNSSTNSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFE 779
Query: 600 TSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSR---ETT 656
+A I+EES+ +S+TGG ++LS+ S I ++ S D + R SS+ S E
Sbjct: 780 KPQAVITEESE----NSKTGGKIELSSHRRGS--IDQTASTDEIGRSISSTSSSVRAEAI 833
Query: 657 IETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVL 716
E + RGMVLPF+P S+TFD+I YSVDMP+EMK +GV +D+L LL GVSGAFRPGVL
Sbjct: 834 AEARRNTKRGMVLPFQPLSITFDDIRYSVDMPEEMKSQGVLEDRLKLLKGVSGAFRPGVL 893
Query: 717 TALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYV 776
TALMGV+G+GKTTLMDVLAGRKT GYI GNI ISGYPK QETFTRISGYCEQNDIHSP+V
Sbjct: 894 TALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFTRISGYCEQNDIHSPHV 953
Query: 777 TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRL 836
T++ESLLYSAWLRL ++V+SKTR+MF+E+VMELVEL PL+ +LVGLPGVNGLSTEQRKRL
Sbjct: 954 TIHESLLYSAWLRLPADVDSKTRKMFIEKVMELVELTPLKDSLVGLPGVNGLSTEQRKRL 1013
Query: 837 TIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 896
TIAVELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1014 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1073
Query: 897 ----------------------------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALG 928
GI GVSKI+ GYNPATWMLEVT +QE LG
Sbjct: 1074 ELLLLKRGGQEIYVGLLGRHSSCLIKYFEGIEGVSKIKGGYNPATWMLEVTTSAQEFLLG 1133
Query: 929 VDFAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSR 988
VDF IYK+S LYR NK LI+ELS+PAPGSK+LYF QY SFFTQCMACLWKQ SY R
Sbjct: 1134 VDFTEIYKNSNLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWR 1193
Query: 989 NPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQP 1048
NP YTAVRF FT FI+LIFGTMFWD+GTK TKQQDL N MG MY AV FLGV N SSVQP
Sbjct: 1194 NPPYTAVRFFFTTFIALIFGTMFWDLGTKRTKQQDLSNAMGSMYAAVLFLGVQNSSSVQP 1253
Query: 1049 VVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFF 1108
VV +ER+VFYRE+ AG+YS M YAFA L+EIPY+F QA Y +IVYAMIGFEWTAAKFF
Sbjct: 1254 VVAVERTVFYRERAAGIYSAMPYAFAHALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFF 1313
Query: 1109 WFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRW 1168
W+LFFMFF+LLYFTF+GMM VA TPN HIA+IV+ FYGLWN+ SGFI+PRTRIPVWWRW
Sbjct: 1314 WYLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRW 1373
Query: 1169 SYWANPIAWTLYGFFASQFGDVQDRLE-SGETVKQFLRSYYGFKHDFLGAVAAVVFVLPS 1227
YWA P+AWTLYG SQFGD+QDR E +G+TV+Q+L Y+GF+HDFLG VAAV+
Sbjct: 1374 YYWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTV 1433
Query: 1228 LFAFVFALGIRVLNFQKR 1245
LF F+FA I+ NFQ+R
Sbjct: 1434 LFLFIFAFAIKAFNFQRR 1451
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816688|emb|CAN77690.1| hypothetical protein VITISV_022715 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1867 bits (4836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 931/1296 (71%), Positives = 1055/1296 (81%), Gaps = 55/1296 (4%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPP SGKTTL+LAL+GKLDSSLK +GKVTYNGH M+EFVPQRTA YISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIG 239
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMK------------- 107
EMTVRETLAFSARCQGVG RYDML ELSRREKAA I PD DIDVFMK
Sbjct: 240 EMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKEQNLLSLEFLKVL 299
Query: 108 ----AVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPA 163
AV EGQ+ NVITDY LK+L L+VCADT+VGD+M+RGISGGQRKRVTTGEMLVGP+
Sbjct: 300 IGLMAVATEGQKENVITDYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPS 359
Query: 164 HALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQ 223
ALFMDEISTGLDSSTT+ IVNSL Q HILNGTALISLLQPAPE Y+LFDDIIL+SD Q
Sbjct: 360 KALFMDEISTGLDSSTTYQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQ 419
Query: 224 IVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFV 283
IVYQGP E V FF SMGF+CP+RKG+ADFLQEVTSRKDQ+QYW R DEPY FVTVKEF
Sbjct: 420 IVYQGPREDVLDFFESMGFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFA 479
Query: 284 HAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFV 343
AFQSFH+GRKLG EL PFDK SHPAAL T KYGV KKELL AC SRE+LLMKRNSFV
Sbjct: 480 EAFQSFHIGRKLGHELATPFDKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFV 539
Query: 344 YIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAK 403
YIF+LTQ++ +A I MTIFLRT+MH++S DG IYTGALFF + I FNGM+E++MTIAK
Sbjct: 540 YIFKLTQLIIMAAISMTIFLRTEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAK 599
Query: 404 LPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLL 463
LPVFYKQR L FYP+WAYALP+WILKIPI+ VEV+VWVFM+YYVIGFD N GR FKQYLL
Sbjct: 600 LPVFYKQRGLLFYPAWAYALPSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLL 659
Query: 464 LLIVNQMSSAMFRLIAAVGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCS 523
L++VNQM+SA+FR IAA GR+M+VANTFGS LLLLF LGGFVLSR+++KKWW WGYW S
Sbjct: 660 LVLVNQMASALFRFIAAAGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSS 719
Query: 524 PLMYAQNAIVVNEFLGNSW-KKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFII 582
PLMYAQNAIVVNEFLG SW K + T+ LG+ VL SRGFFT+AYWYW+G GAL GFI+
Sbjct: 720 PLMYAQNAIVVNEFLGKSWSKNSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFIL 779
Query: 583 LFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRS-ESRD 641
+F F +T+AL++LN F +A I+EES+ +S+TGG ++LS+ S T S E R+
Sbjct: 780 VFNFCYTVALTYLNAFEKPQAVITEESE----NSKTGGKIELSSHRRGSIDQTASTERRE 835
Query: 642 YVRRRNSSSQSR---ETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHD 698
+ R SS+ S E E + +GMVLPF+P S+TF++I YSVDMP+EMK +GV +
Sbjct: 836 EIGRSISSTSSSVRAEAIAEARRNNKKGMVLPFQPLSITFEDIRYSVDMPEEMKSQGVLE 895
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQET 758
D+L LL GVSGAFRPGVLTALMGV+G+GKTTLMDVLAGRKT GYI GNI ISGYPK QET
Sbjct: 896 DRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQET 955
Query: 759 FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 818
F RI GYCEQNDIHSP+VT++ESLLYSAWLRL ++V+SKTR+MF+EEVMELVEL PL+ +
Sbjct: 956 FARIXGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIEEVMELVELTPLKDS 1015
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGR 878
LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTVDTGR
Sbjct: 1016 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1075
Query: 879 TVVCTIHQPSIDIFEAFD----------------------------AGIPGVSKIRDGYN 910
TVVCTIHQPSIDIFEAFD GI GVSKI+ GYN
Sbjct: 1076 TVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRHSSHLIKYFEGIEGVSKIKGGYN 1135
Query: 911 PATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLS 970
PATWMLEVT +QE LGVDF IYK+S+LYR NK LI+ELS+PAPGSK+LYF QY S
Sbjct: 1136 PATWMLEVTTSAQEFLLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQS 1195
Query: 971 FFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGF 1030
FFTQCMACLWKQ SY RNP YTAVRF FT FI+LIFGTMFWD+GTK KQQDL N MG
Sbjct: 1196 FFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKRKKQQDLSNAMGS 1255
Query: 1031 MYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPY 1090
MY AV FLGV N SSVQPVV +ER+VFYRE+ AGMYS M YAFAQ L+EIPY+F QA Y
Sbjct: 1256 MYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGMYSAMPYAFAQALVEIPYVFAQAVVY 1315
Query: 1091 SLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWN 1150
+IVYAMIGFEWTAAKFFW+LFFMFF+LLYFTF+GMM VA TPN HIA+IV+ FYGLWN
Sbjct: 1316 GVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWN 1375
Query: 1151 IVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLE-SGETVKQFLRSYYG 1209
+ SGFI+PRTRIPVWWRW YWA P+AWTLYG SQFGD+QDR E +G+TV+Q+L Y+G
Sbjct: 1376 LFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFG 1435
Query: 1210 FKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1245
F+HDFLG VAAV+ LF F+FA I+ NFQ+R
Sbjct: 1436 FEHDFLGVVAAVIVGFTILFLFIFAFAIKAFNFQRR 1471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482652|ref|XP_003632801.1| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1865 bits (4831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 924/1275 (72%), Positives = 1045/1275 (81%), Gaps = 58/1275 (4%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPP SGKTTL+LAL+GKLDSSLK +GKVTYNGH M+EFVPQRTA YISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIG 239
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETLAFSARCQGVG RYDML ELSRREKAA I PD DIDVFMKA EGQ+ NVIT
Sbjct: 240 EMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAAATEGQKENVIT 299
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DY LK+L L+VCADT+VGD+M+RGISGGQRKRVTTGEMLVGP+ ALFMDEISTGLDSSTT
Sbjct: 300 DYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTT 359
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
+ IVNSL Q HILNGTALISLLQPAPE Y+LFDDIIL+SD QIVYQGP E V FF SM
Sbjct: 360 YQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESM 419
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GF+CP+RKG+ADFLQEVTSRKDQ+QYW R DEPY FVTVK+F AFQSFH GRK+GDEL
Sbjct: 420 GFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKQFAEAFQSFHSGRKVGDELA 479
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
PFDK SHPAAL T KYGV KKELL AC SRE+ LMKRNSFVYI +LTQ++ +A I MT
Sbjct: 480 TPFDKTKSHPAALKTEKYGVRKKELLDACISREYWLMKRNSFVYILQLTQLIIMAAISMT 539
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
IFLRT+MH++S DG IY GALFF + I FNGM+E++MTIAKLPVFYKQR L FYP+WA
Sbjct: 540 IFLRTEMHKNSTDDGSIYMGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWA 599
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
YAL +WILKIPI+ VEV+VWVFM+YYVIGFD N GR FKQYLLL++VNQM+SA+FR IAA
Sbjct: 600 YALSSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAA 659
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
GR+M+VANTFGS LLLLF LGGFVLSR+++KKWW WGYW SPLMYAQNAIVVNEFLG
Sbjct: 660 AGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGK 719
Query: 541 SW-KKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFG 599
SW K N T+ LG+ VL SRGFFT+AYWYW+G GAL GFI++F F +T+AL++LN F
Sbjct: 720 SWSKNSSTNSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFE 779
Query: 600 TSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIET 659
+A I+EES+ +S+TGG ++L SSH RR + +++R T
Sbjct: 780 KPQAVITEESE----NSKTGGKIEL------SSH-----------RREAIAEARRNT--- 815
Query: 660 DQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTAL 719
RGMVLPF+P S+TFD+I YSVDMP+EMK +GV +D+L LL GVSGAFRPGVLTAL
Sbjct: 816 ----KRGMVLPFQPLSITFDDIRYSVDMPEEMKSQGVLEDRLKLLKGVSGAFRPGVLTAL 871
Query: 720 MGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVY 779
MGV+G+GKTTLMDVLAGRKT GYI GNI ISGYPK QETFTRISGYCEQNDIHSP+VT++
Sbjct: 872 MGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFTRISGYCEQNDIHSPHVTIH 931
Query: 780 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIA 839
ESLLYSAWLRL ++V+SKTR+MF+E+VMELVEL PL+ +LVGLPGVNGLSTEQRKRLTIA
Sbjct: 932 ESLLYSAWLRLPADVDSKTRKMFIEKVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIA 991
Query: 840 VELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD--- 896
VELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 992 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1051
Query: 897 -------------------------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDF 931
GI GVSKI+ GYNPATWMLEVT +QE LGVDF
Sbjct: 1052 LLKRGGQEIYVGLLGRHSSCLIKYFEGIEGVSKIKGGYNPATWMLEVTTSAQEFLLGVDF 1111
Query: 932 AAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPH 991
IYK+S LYR NK LI+ELS+PAPGSK+LYF QY SFFTQCMACLWKQ SY RNP
Sbjct: 1112 TEIYKNSNLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPP 1171
Query: 992 YTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVD 1051
YTAVRF FT FI+LIFGTMFWD+GTK TKQQDL N MG MY AV FLGV N SSVQPVV
Sbjct: 1172 YTAVRFFFTTFIALIFGTMFWDLGTKRTKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVA 1231
Query: 1052 LERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFL 1111
+ER+VFYRE+ AG+YS M YAFA V IEIPY+F QA Y +IVYAMIGFEWTAAKFFW+L
Sbjct: 1232 VERTVFYRERAAGIYSAMPYAFAHVTIEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYL 1291
Query: 1112 FFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYW 1171
FFMFF+LLYFTF+GMM VA TPN HIA+IV+ FYGLWN+ SGFI+PRTRIPVWWRW YW
Sbjct: 1292 FFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYW 1351
Query: 1172 ANPIAWTLYGFFASQFGDVQDRLE-SGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFA 1230
A P+AWTLYG SQFGD+QDR E +G+TV+Q+L Y+GF+HDFLG VAAV+ LF
Sbjct: 1352 ACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFL 1411
Query: 1231 FVFALGIRVLNFQKR 1245
F+FA I+ NFQ+R
Sbjct: 1412 FIFAFAIKAFNFQRR 1426
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1864 bits (4829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 882/1275 (69%), Positives = 1035/1275 (81%), Gaps = 57/1275 (4%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPP SGKTTL+LAL+GKLD +LK SG+VTYNGH+++EFVPQRTAAYISQHD+HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIG 239
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETLAFSARCQGVGSRYDML ELSRREKAA I PD D+DV+MKA EGQE+N++T
Sbjct: 240 EMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIVT 299
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DY LK+L LD+CADT+VGDEMLRGISGGQRKRVTTGEMLVGPA+ALFMDEISTGLDSSTT
Sbjct: 300 DYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 359
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
F IV+SL + HILNGTA+ISLLQPAPE Y+LFDDIIL+SDGQ+VY GP E+V FF SM
Sbjct: 360 FQIVSSLRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESM 419
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GF+CP+RKG+ADFLQEVTS+KDQ QYWVR D+PYRFVTV +F AFQSFH+G KLG+EL
Sbjct: 420 GFRCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELT 479
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
+PFD+ SHPAALTT+KYG+ KKELLKA FSRE+LLMKRNSFVY+F+L+Q+ +A++ MT
Sbjct: 480 VPFDRTKSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMT 539
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+FLRT+MH +++ D +Y GA+FF+L T+ FNG+AEISMTIAKLPVFYKQR+L FYPSWA
Sbjct: 540 LFLRTEMHHENMDDAGVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWA 599
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
YA+P+WILKIP++IVEV+VWVF+TYYVIGFD N GRFFKQYL+LLIV+QM+S +FR IAA
Sbjct: 600 YAIPSWILKIPVTIVEVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAA 659
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
+GR+M+VANTFG+ ++ + LGGF+LS+ DIK WW WGYW SPLMY QNA++VNEFL N
Sbjct: 660 LGRNMIVANTFGAFAIITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSN 719
Query: 541 SWKKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGT 600
SW N T LG+E L+SR FFTD+YWYWLG+GAL GF+ LF F LAL FL PF
Sbjct: 720 SWH----NATHNLGVEYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFDK 775
Query: 601 SKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETD 660
+A I+E+ S E T ++L SS ++ +E+
Sbjct: 776 PQATITEDESSNEG---TLADIELPGI--------------------ESSGRGDSLVESS 812
Query: 661 QPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALM 720
K +GMVLPFEP S+TFDE+ YSVDMPQEMK +GV +D+LVLL GVSGAFRPGVLTALM
Sbjct: 813 HGKKKGMVLPFEPHSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALM 872
Query: 721 GVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 780
GV+G+GKTTLMDVLAGRKT GYI G+I ISGYPK QETF RISGYCEQNDIHSP+VTVYE
Sbjct: 873 GVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYE 932
Query: 781 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAV 840
SLLYSAWLRL S V+SKTR+MF+EEVMELVELNP+R +LVGLPGV+GLSTEQRKRLTIAV
Sbjct: 933 SLLYSAWLRLPSSVDSKTRKMFIEEVMELVELNPVRNSLVGLPGVSGLSTEQRKRLTIAV 992
Query: 841 ELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA--- 897
ELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 993 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1052
Query: 898 -------------------------GIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFA 932
I GVSKI+DGYNPATWMLEVTA +QE++LGVDF
Sbjct: 1053 MKRGGQEIYVGPLGRHSSHLIKYFESIEGVSKIKDGYNPATWMLEVTATAQELSLGVDFT 1112
Query: 933 AIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHY 992
+YK+S+LYR NK LIQEL +PAPGSK+L+F QY SF QC ACLWKQ WSY RNP Y
Sbjct: 1113 DLYKNSDLYRRNKQLIQELGQPAPGSKDLHFPTQYSQSFLVQCQACLWKQRWSYWRNPPY 1172
Query: 993 TAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDL 1052
TAVRF FT FI+L+FGT+FWD+G K + + DL N +G MY AV FLGV N SSVQPVV +
Sbjct: 1173 TAVRFFFTTFIALMFGTIFWDLGGKHSTRGDLLNAIGSMYTAVLFLGVQNASSVQPVVAI 1232
Query: 1053 ERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLF 1112
ER+VFYREK AGMYS + YAFAQ+L+E+PY+FVQA Y +IVYAMIGFEWTA KFFW+LF
Sbjct: 1233 ERTVFYREKAAGMYSALPYAFAQILVELPYVFVQAVTYGVIVYAMIGFEWTAEKFFWYLF 1292
Query: 1113 FMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWA 1172
FM+F+LLY+TF+GMM V TPNHHIASIV+ FY +WN+ SGF++ R IPVWWRW YWA
Sbjct: 1293 FMYFTLLYYTFYGMMTVGLTPNHHIASIVAAAFYAVWNLFSGFVVTRPSIPVWWRWYYWA 1352
Query: 1173 NPIAWTLYGFFASQFGDVQDRL--ESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFA 1230
P+AWT+YG ASQFGD+ + + E + VK FL YYG KHDF+G A VV + LFA
Sbjct: 1353 CPVAWTIYGLVASQFGDLTEPMTSEGQKIVKDFLEDYYGIKHDFIGVSAVVVAGIAVLFA 1412
Query: 1231 FVFALGIRVLNFQKR 1245
+FA+ I+ NFQKR
Sbjct: 1413 LIFAVSIKTFNFQKR 1427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482991|ref|XP_003632876.1| PREDICTED: pleiotropic drug resistance protein 1 isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1852 bits (4796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 918/1273 (72%), Positives = 1047/1273 (82%), Gaps = 34/1273 (2%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPP SGKTTL+LAL+GKLD +LK +G+VTYNGH M EFVPQRTAAYISQHD HIG
Sbjct: 179 MTLLLGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIG 238
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRETLAFSARCQGVG RYDML ELSRREKAA I PD D+DVFMKA EGQ+ NV+T
Sbjct: 239 EMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVT 298
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DY LK+L LD+CADT+VGDEM+RGISGGQRKRVTTGEMLVGP+ ALFMDEISTGLDSSTT
Sbjct: 299 DYTLKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTT 358
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
F IVN L Q HILNGTA+ISLLQPAPE YNLFDDIIL+SDG+I+YQGP E V +FF S
Sbjct: 359 FQIVNCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFEST 418
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GF+CP+RKG+ADFLQEVTS+KDQ+QYW R +EPYRFVTVKEF AFQSFH GRK+GDEL
Sbjct: 419 GFRCPERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELA 478
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
P+DK SHPAALTT+KYGV KKELL A SRE+LLMKRNSFVY+F+LTQ+ +AVI MT
Sbjct: 479 SPYDKTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMT 538
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+FLRT+MH++S+ DG IYTGALFF + I FNGMAE++M IAKLPVFYKQRDL FYP+WA
Sbjct: 539 LFLRTEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWA 598
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
YALP WILKIPI+ +EV VWVFMTYYVIGFD N R F+QYLLLL+VNQM+S +FRLIA+
Sbjct: 599 YALPTWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIAS 658
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
GR+M+V+NTFG+ VLL+L LGGF+LS DD+KKWW WGYWCSPLMYAQNAIVVNEFLG+
Sbjct: 659 AGRNMIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGH 718
Query: 541 SWKKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGT 600
SWKK + T+ LG+ VL++RGFFT+AYWYW+G GAL GFI+LF FG+TL L+FLNPF
Sbjct: 719 SWKKNVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDK 778
Query: 601 SKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETD 660
+A I EES + E TGG ++LS +SS R E SS+ E +
Sbjct: 779 PQAVIVEESDNAE----TGGQIELS--QRNSSIDQRGEEIGRSISSTSSAVREEAVAGAN 832
Query: 661 QPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALM 720
K +GMVLPF+P+S+TFD+I YSVDMP+EMK +GV +DKL LL GVSGAFRPGVLTALM
Sbjct: 833 HNKKKGMVLPFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALM 892
Query: 721 GVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 780
GV+G+GKTTLMDVLAGRKT GYI GNITISGYPK QETF RISGYCEQNDIHSP+VTVYE
Sbjct: 893 GVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYE 952
Query: 781 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAV 840
SLLYSAWLRL S+V S+TR+MF+EEVMELVEL PLR ALVGLPGV+GLSTEQRKRLTIAV
Sbjct: 953 SLLYSAWLRLPSDVKSETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIAV 1012
Query: 841 ELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD---- 896
ELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1013 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1072
Query: 897 ------------------------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFA 932
GI GVSKI+DGYNPATWMLE T +QE LGVDF
Sbjct: 1073 LKRGGQEIYVGPLGRYSCHLINYFEGIEGVSKIKDGYNPATWMLEATTAAQEATLGVDFT 1132
Query: 933 AIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHY 992
IYK+S+LYR NK LI+ELS+P PG+K+LYF Q+ FFTQ +ACLWKQ WSY RNP Y
Sbjct: 1133 EIYKNSDLYRRNKDLIKELSQPPPGTKDLYFRTQFSQPFFTQFLACLWKQRWSYWRNPPY 1192
Query: 993 TAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDL 1052
TAVRFLFT FI+L+FGTMFWD+GTK + QQDLFN MG MY AV FLG+ N SVQPVV +
Sbjct: 1193 TAVRFLFTTFIALMFGTMFWDLGTKWSTQQDLFNAMGSMYAAVLFLGIQNSQSVQPVVVV 1252
Query: 1053 ERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLF 1112
ER+VFYRE+ AGMYSP++YAFAQV IEIPYIF QA Y LIVYAMIGF+WTAAKFFW+LF
Sbjct: 1253 ERTVFYRERAAGMYSPLSYAFAQVTIEIPYIFSQAVVYGLIVYAMIGFQWTAAKFFWYLF 1312
Query: 1113 FMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWA 1172
FMFF+L+YFTF+GMM VA TPN +IASIV+ FYGLWN+ SGFI+PR RIPVWWRW YW
Sbjct: 1313 FMFFTLMYFTFYGMMAVAATPNQNIASIVAAAFYGLWNLFSGFIVPRNRIPVWWRWYYWI 1372
Query: 1173 NPIAWTLYGFFASQFGDVQDRLESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFV 1232
P++WTLYG SQFGD+ + L +G TVK +L Y+GFKHDFLG VAAVV LF F+
Sbjct: 1373 CPVSWTLYGLVTSQFGDITEELNTGVTVKDYLNDYFGFKHDFLGVVAAVVVGFVVLFLFI 1432
Query: 1233 FALGIRVLNFQKR 1245
FA I+ LNFQ+R
Sbjct: 1433 FAYAIKALNFQRR 1445
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1245 | ||||||
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.710 | 0.602 | 0.561 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.500 | 0.437 | 0.667 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.505 | 0.432 | 0.566 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.503 | 0.431 | 0.555 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.496 | 0.428 | 0.567 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.497 | 0.435 | 0.545 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.497 | 0.437 | 0.546 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.571 | 0.503 | 0.463 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.488 | 0.426 | 0.502 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.571 | 0.491 | 0.471 | 4.7e-251 |
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2592 (917.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 505/900 (56%), Positives = 635/900 (70%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPP SGKTTL+LALAGKLD SL+ SG +TYNG+ + EFVP++T+AYISQ+D+H+G
Sbjct: 199 MTLLLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVG 258
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
MTV+ETL FSARCQGVG+RYD+L EL+RREK A I P+AD+D+FMKA +G + +++T
Sbjct: 259 IMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVT 318
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DY LK+L LD+C DT+VGD+M+RGISGGQ+KRVTTGEM+VGP LFMDEISTGLDSSTT
Sbjct: 319 DYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 378
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
F IV L Q H+ T L+SLLQPAPE ++LFDDIILVS+GQIVYQGP +++ +FF S
Sbjct: 379 FQIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESF 438
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP+RKG ADFLQEVTS+KDQEQYWV + PY ++ V EF ++SFHVG K+ +EL
Sbjct: 439 GFKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELA 498
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
+PFDK H AAL KY V K+ELLK+C+ +E LLM+RN+F Y+F+ Q++ +A I T
Sbjct: 499 VPFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITST 558
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+FLRT+M+ + D +Y GAL F + FNG AE++M +++LPVFYKQRDL FYPSW
Sbjct: 559 LFLRTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWT 618
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
++LP ++L IP SI+E + W+ +TYY IGF +A RFFKQ+LL+ ++ QM++++FRLIA+
Sbjct: 619 FSLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIAS 678
Query: 481 VGRSMVVANTXXXXXXXXXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
V R+M++ANT + I WW W YW SPL YA N +VVNE
Sbjct: 679 VCRTMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAP 738
Query: 541 SW--KKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPF 598
W K N T LG VL++ + WYW+ VGAL F LF FTLAL++LNP
Sbjct: 739 RWMNKMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPL 798
Query: 599 GTSKAFISEESQSTEHDSRTGGTVQLSTC-ANSSSHITRSE-SRDYVRRRNSSSQSRETT 656
G + EE + LST N + SRD + + ++
Sbjct: 799 GKKAGLLPEEENEDADQGKDPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAGNK--- 855
Query: 657 IETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVL 716
+GMVLPF P +++FD++ Y VDMP EM+ +GV + +L LL GV+GAFRPGVL
Sbjct: 856 --------KGMVLPFTPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVL 907
Query: 717 TALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYV 776
TALMGV+G+GKTTLMDVLAGRKT GYI G++ ISG+PK QETF RISGYCEQ DIHSP V
Sbjct: 908 TALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQV 967
Query: 777 TVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRL 836
TV ESL++SA+LRL EV + + LR ++VGLPGV GLSTEQRKRL
Sbjct: 968 TVRESLIFSAFLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRL 1027
Query: 837 TIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGRTVVCTIHQPSIDIFEAFD 896
TIAVELVANPSIIFMDEPTSGLD DTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1028 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFD 1087
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2273 (805.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 418/626 (66%), Positives = 508/626 (81%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
M LLLGPP SGKTTL+LALAGKLD LK +G+VTYNGH M+EFVPQRTAAYI Q+D+HIG
Sbjct: 182 MALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIG 241
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRET A++AR QGVGSRYDML EL+RREK A I PD DID+FMKA+ G++ NV+T
Sbjct: 242 EMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMT 301
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DYILK+L L+VCADT+VGD+MLRGISGGQ+KRVTTGEMLVGP+ ALFMDEISTGLDSSTT
Sbjct: 302 DYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTT 361
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
+ IVNSL + HI NGTALISLLQPAPE +NLFDDIIL+++G+I+Y+GP +HV +FF +M
Sbjct: 362 YQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETM 421
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP RKG+ADFLQEVTS+KDQ QYW R DEPYRF+ V+EF AFQSFHVGR++GDEL
Sbjct: 422 GFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELA 481
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
+PFDK SHPAALTT+KYGVG KEL+K FSRE+LLMKRNSFVY F+ Q++ +A + MT
Sbjct: 482 LPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMT 541
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+F RT+M + + DG +YTGALFFIL + FNGM+E+SMTIAKLPVFYKQRDL FYP+W
Sbjct: 542 LFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWV 601
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
Y+LP W+LKIPIS +E ++ F+TYYVIGFD N GR FKQY+LL+++NQM+SA+F+++AA
Sbjct: 602 YSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAA 661
Query: 481 VGRSMVVANTXXXXXXXXXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
+GR+M+VANT RDDIKKWW WGYW SP+MY QNAI+ NEF G+
Sbjct: 662 LGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGH 721
Query: 541 SWKKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGT 600
SW + + N ++ LG+ L SRGF AYWYW+G GAL GF++LF FGFTLAL+FLN G
Sbjct: 722 SWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGK 781
Query: 601 SKAFISEE--SQSTEHDS-RTGGTVQ 623
+A I+EE S TE S R+ G V+
Sbjct: 782 PQAVIAEEPASDETELQSARSEGVVE 807
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1922 (681.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 363/641 (56%), Positives = 465/641 (72%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPP SGKTTL+ ALAGKLD +L+ SG++TY GH+ EFVPQ+T AYISQHD+H G
Sbjct: 201 MTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFG 260
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRE+L FS RC GVG+RY +L ELSRRE+ A I PD +ID FMK++ GQE +++T
Sbjct: 261 EMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSLVT 320
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DY+LK+L LD+CADT+VGD M RGISGGQRKR+TTGEMLVGPA ALFMDEISTGLDSSTT
Sbjct: 321 DYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTT 380
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
F I + Q HI + T +ISLLQPAPE + LFDDIIL+S+GQIVYQG ++V +FF M
Sbjct: 381 FQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEYM 440
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP+RKGIADFLQEVTS+KDQEQYW R + PY +V+V +F F SFH G++L E
Sbjct: 441 GFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFR 500
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
+P+DK +HPAAL T+KYG+ K+L KACF RE LLMKRNSFVY+F+ Q+ +++I MT
Sbjct: 501 VPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMT 560
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
++ RT+MH ++ DG + GALFF L + FNGMAE++ T+ +LPVF+KQRD FYP WA
Sbjct: 561 VYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWA 620
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
+ALP ++LKIP+S++E +W+ +TYY IGF +A RFF+Q L VNQM+ ++FR + A
Sbjct: 621 FALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGA 680
Query: 481 VGRSMVVANTXXXXXXXXXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
+GR+ V+AN+ +DDI W W Y+ SP+MY Q A+V+NEFL
Sbjct: 681 LGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDE 740
Query: 541 SWKKILPNK-----TKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFL 595
W PN K +G +L SRGFFT+ YW+W+ +GAL GF +LF F + +AL +L
Sbjct: 741 RWGS--PNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYL 798
Query: 596 NPFGTSKAFISEESQSTEHD---SRTGGTVQLSTCANSSSH 633
NP G SKA E +H S TGG+V T ++SSH
Sbjct: 799 NPLGNSKATTVVEEGKDKHKGSHSGTGGSVVELT--STSSH 837
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1906 (676.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 354/637 (55%), Positives = 459/637 (72%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPP SGKTTL+ ALAGKLD +L+ SG++TY GH+ EFVPQ+T AYISQHD+H G
Sbjct: 203 MTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFG 262
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRE L FS RC GVGSRY ++ ELSRREK I PD ID FMK++ GQE +++T
Sbjct: 263 EMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVT 322
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DY+LK+L LD+CAD + GD M RGISGGQ+KR+TTGEMLVGPA ALFMDEISTGLDSSTT
Sbjct: 323 DYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTT 382
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
F I + Q HI + T +ISLLQPAPE + LFDDIIL+S+GQIVYQGP ++V +FF
Sbjct: 383 FQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEYF 442
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GF+CP+RKG+ADFLQEVTS+KDQEQYW + ++PY +V+V +F F +FH G+KL E
Sbjct: 443 GFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFR 502
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
+P+DK +H AAL T+KYG+ EL KACF RE LLMKRNSFVY+F+ Q+ +++I MT
Sbjct: 503 VPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITMT 562
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
++LRT+MH ++ DG + GA+FF L + FNG+AE++ T+ +LPVFYKQRD FYP WA
Sbjct: 563 VYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWA 622
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
+ALPAW+LKIP+S++E +W+ +TYY IGF +A RFF+Q L VNQM+ ++FR + A
Sbjct: 623 FALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGA 682
Query: 481 VGRSMVVANTXXXXXXXXXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
+GR+ V++N+ +DDI+ W W Y+ SP+MY Q AIV+NEFL
Sbjct: 683 IGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDE 742
Query: 541 SWKKILPN-----KTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFL 595
W PN K +G +L SRGFFT+ YW+W+ + AL GF +LF + LAL +L
Sbjct: 743 RWSS--PNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYL 800
Query: 596 NPFGTSKAFISEES---QSTEHDSRTGGTVQLSTCAN 629
NP G SKA + EE Q E+ G V+L++ +N
Sbjct: 801 NPLGNSKATVVEEGKDKQKGENRGTEGSVVELNSSSN 837
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1887 (669.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 352/620 (56%), Positives = 454/620 (73%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPP SGKTTL+LALAGKLD SL SG+VTYNG+ ++EFVP +T+AYISQ+D+H+G
Sbjct: 197 MTLLLGPPSSGKTTLLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVG 256
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
MTV+ETL FSARCQGVG+RYD+L EL+RREK A I P+AD+D+FMKA +G ++++IT
Sbjct: 257 IMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLIT 316
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DY LK+L LD+C DT+VGD+M+RGISGGQ+KRVTTGEM+VGP LFMDEISTGLDSSTT
Sbjct: 317 DYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 376
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
F IV L Q H+ T LISLLQPAPE ++LFDDIIL+S+GQIVYQGP +H+ +FF S
Sbjct: 377 FQIVKCLQQIVHLTEATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESF 436
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP+RKG ADFLQEVTS+KDQEQYWV + PYR++ V EF +F+ FHVG KL +EL
Sbjct: 437 GFKCPERKGTADFLQEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELS 496
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
+P+DK SH AAL KY + K ELLK+C+ +E +LMKRNSF Y+F+ Q++ +A I T
Sbjct: 497 VPYDKSKSHKAALMFDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITST 556
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
++LRT+MH + D IY G+L F + FNG+AE++MTI +LPVFYKQRDL F+P W
Sbjct: 557 LYLRTEMHTRNEIDANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWT 616
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
Y LP ++L IPISI E + W+ +TYY IG+ +A RFFKQ+L++ ++ QM++ +FR IA+
Sbjct: 617 YTLPTFLLGIPISIFESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIAS 676
Query: 481 VGRSMVVANTXXXXXXXXXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
R+M +ANT R +I WW+W YW SPL YA NAI VNE
Sbjct: 677 TCRTMTIANTGGVLVLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAP 736
Query: 541 SW-KKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFG 599
W K+ N T LG VL+ F D WYW+GVG L GF ++F FTLAL++L+P G
Sbjct: 737 RWMNKMSGNSTTRLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLG 796
Query: 600 TSKAFISEESQSTEHDSRTG 619
++A + +E + E + G
Sbjct: 797 KAQAILPKE-EDEEAKGKAG 815
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1862 (660.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 338/620 (54%), Positives = 447/620 (72%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
+TLLLGPP SGKTTL+LALAG+L ++L+ SGK+TYNG+D+ E + RT+AY+SQ D H+
Sbjct: 163 LTLLLGPPSSGKTTLLLALAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVA 222
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVR+TL F+ RCQGVG +YDML+EL+RREK A I+PD D+D+FMK++ G E +++
Sbjct: 223 EMTVRQTLEFAGRCQGVGFKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVV 282
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
+Y++K+L LD CADT+VGDEM++GISGGQ+KR+TTGE+LVGPA LFMDEIS GLDSSTT
Sbjct: 283 EYVMKILGLDTCADTLVGDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT 342
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
I+ + H L GT +ISLLQP+PE Y LFDD+IL+S+GQI+YQGP + V FF S+
Sbjct: 343 HQIIMYMRHSTHALEGTTVISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSL 402
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GF CP RK +ADFLQEVTS+KDQ+QYW PYR+V +F AF+S+ G+KL +L
Sbjct: 403 GFTCPDRKNVADFLQEVTSKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLE 462
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
+PFDK+ +H AAL+T +YGV K ELLK F+ + LMK+N+F+Y+F+ Q++ +A+I MT
Sbjct: 463 VPFDKRFNHSAALSTSQYGVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMT 522
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+F RT MH +++ DG IY G+L+F + I FNG E+ M +AKLPV YK RDL FYPSWA
Sbjct: 523 VFCRTTMHHNTIDDGNIYLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWA 582
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
Y LP+W+L IP SI+E + WV +TYY IG+D RF +Q+LL ++QMS +FR++ +
Sbjct: 583 YTLPSWLLSIPTSIIESATWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGS 642
Query: 481 VGRSMVVANTXXXXXXXXXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
+GR M+VANT RD I WW WGYW SPLMYAQNA VNEFLG+
Sbjct: 643 LGRHMIVANTFGSFAMLVVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGH 702
Query: 541 SWKKILPNKTKP-LGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFG 599
+W+K N T LG+ +L R F+ YWYW+GV AL G+ +LF FTL L+ LNP+G
Sbjct: 703 NWQKTAGNHTSDSLGLALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWG 762
Query: 600 TSKAFISEESQSTEHDSRTG 619
+A +S E R G
Sbjct: 763 KFQAVVSREELDEREKKRKG 782
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1816 (644.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 340/622 (54%), Positives = 444/622 (71%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPP SGKTTL+LALAGKLD SLK +G+VTYNGH + EFVPQ+T+AYISQ+D+H+G
Sbjct: 175 MTLLLGPPSSGKTTLLLALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVG 234
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
MTV+ETL FSARCQGVG+RYD+L EL RREK A I+P+ ++D+FMK++ ++++IT
Sbjct: 235 VMTVQETLDFSARCQGVGTRYDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLIT 294
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DY L++L LD+C DTVVGDEM+RGISGGQ+KRVTTGEM+VGP LFMDEISTGLDSSTT
Sbjct: 295 DYTLRILGLDICKDTVVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 354
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
+ IV L + + T L+SLLQPAPE + LFDDIIL+S+GQIVYQGP +HV FF +
Sbjct: 355 YQIVKCLQEIVRFTDATVLMSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETC 414
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP RKG ADFLQEVTSRKDQEQYW + +PY +++V EF F++FHVG L +L
Sbjct: 415 GFKCPDRKGTADFLQEVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLS 474
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
+P+D+ SHPA+L +K+ V K +L K C+ RE LLMKRN+F YI + Q++ +A+I T
Sbjct: 475 VPYDRFKSHPASLVFKKHSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIAST 534
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
++LRT+M + +DG +Y GAL F + FNG AE+++ I +LPVFYKQRDL F+P W
Sbjct: 535 VYLRTEMGTKNESDGAVYIGALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWT 594
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
++LP ++L IPISI E VWV +TYY+IGF RF K L++ + QM+ +FR IAA
Sbjct: 595 FSLPTFLLGIPISIFESVVWVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAA 654
Query: 481 VGRSMVVANTXXXXXXXXXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
RSM++ANT R +I KWWKW YW SP+ Y +A+ VNE L
Sbjct: 655 TCRSMILANTGGALVILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAP 714
Query: 541 SW-KKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFG 599
W + + + LG+ VL+ FTD WYW+GVG + GF +LF TLAL+FLNP
Sbjct: 715 RWINQPSSDNSTSLGLAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLE 774
Query: 600 TSKAFISEESQSTEHDSRTGGT 621
+A +S+E+ TE + G+
Sbjct: 775 KQQAVVSKEN--TEENRAENGS 794
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1638 (581.7 bits), Expect = 0., Sum P(3) = 0.
Identities = 337/727 (46%), Positives = 465/727 (63%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
+TLLLGPPG GKTTL+ AL+G L+++LK G+++YNGH ++E VPQ+T+AYISQHD+HI
Sbjct: 167 LTLLLGPPGCGKTTLLKALSGNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIA 226
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMT RET+ FSARCQGVGSR D+++E+S+REK IIPD +ID +MKA+ +G + ++ T
Sbjct: 227 EMTTRETIDFSARCQGVGSRTDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQT 286
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DYILK+L LD+CA+T+VG+ M RGISGGQ+KR+TT EM+VGP ALFMDEI+ GLDSST
Sbjct: 287 DYILKILGLDICAETLVGNAMKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTA 346
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
F I+ SL Q HI N T +SLLQPAPE Y+LFDDI+L+++G+IVY GP + V +FF
Sbjct: 347 FQIIKSLQQVAHITNATVFVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEEC 406
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GF+CP+RKG+ADFLQEV S+KDQ QYW+ + P+ FV+V F+ +GRK+ + L
Sbjct: 407 GFQCPERKGVADFLQEVISKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALS 466
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
P+D +H AL+ Y + K EL +AC SRE LLMKRN FVY+F+ Q++ A+I MT
Sbjct: 467 KPYDISKTHKDALSFNVYSLPKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMT 526
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+F+RT+M D + G Y LFF + +G+ E+SMT+ +L VFYKQ+ L FYP+WA
Sbjct: 527 VFIRTRMDID-IIHGNSYMSCLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWA 585
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
YA+PA +LKIP+S E VW +TYYVIG+ RFF+Q+++L V+ S +MFR IAA
Sbjct: 586 YAIPATVLKIPLSFFESLVWTCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAA 645
Query: 481 VGRSMVVANTXXXXXXXXXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
+ ++ V A T D+ W KWG+W +P+ YA+ + VNEFL
Sbjct: 646 IFQTGVAAMTAGSFVMLITFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAP 705
Query: 541 SWKKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGT 600
W+K+ P LG +L+SRG D Y YW+ + AL G I+F FTLALSFL +
Sbjct: 706 RWQKMQPTNVT-LGRTILESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTS 764
Query: 601 SKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETD 660
S+ IS++ S E +V+ + +SS + + + + ++ D
Sbjct: 765 SRPMISQDKLS-ELQGTKDSSVKKNKPLDSSIKTNEDPGKMILPFKPLTITFQDLNYYVD 823
Query: 661 QP-KNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTAL 719
P + +G + L EIT + R GV L L G+SGA + +L L
Sbjct: 824 VPVEMKGQGYNEKKLQL-LSEITGAF-------RPGV----LTALMGISGAGKTTLLDVL 871
Query: 720 MGVTGSG 726
G SG
Sbjct: 872 AGRKTSG 878
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1628 (578.1 bits), Expect = 0., Sum P(3) = 0.
Identities = 306/609 (50%), Positives = 420/609 (68%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPPGSGK+TL+LALAGKLD SLK +G +TYNG ++++F +RT+AYISQ D HI
Sbjct: 188 MTLLLGPPGSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIA 247
Query: 61 EMTVRETLAFSARCQGVGSRY-DMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVI 119
E+TVRETL F+ARCQG + + +L+R EK I P ++ID FMKA +G++ +V
Sbjct: 248 ELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVS 307
Query: 120 TDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 179
TDY+LKVL LDVC+DT+VG++M+RG+SGGQRKRVTTGEM VGP LFMDEISTGLDSST
Sbjct: 308 TDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSST 367
Query: 180 TFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFIS 239
TF IV + F H+++ T L++LLQPAPE ++LFDD+IL+S+G +VYQGP E V FF S
Sbjct: 368 TFQIVKCIRNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFES 427
Query: 240 MGFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDEL 299
+GF+ P RKG+ADFLQEVTS+KDQ QYW +PY+F+ V + AF++ G +L
Sbjct: 428 LGFRLPPRKGVADFLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKL 487
Query: 300 GIPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGM 359
PFDKK++ P+AL K+ + E LK CF RE LL+KR+ F+Y FR QV F+ ++
Sbjct: 488 AAPFDKKSADPSALCRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTA 547
Query: 360 TIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSW 419
T+FL+T++H S G Y LFF L + FNG +E+ + I++LPVFYKQRD F+P+W
Sbjct: 548 TVFLKTRLHPTSEQFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAW 607
Query: 420 AYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIA 479
++++ +W+L++P S++E VW + Y+ +G +AGRFF+ LLL V+QM+ +FR++A
Sbjct: 608 SWSIASWLLRVPYSVLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMA 667
Query: 480 AVGRSMVVANTXXXXXXXXXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLG 539
++ R MV+ANT + DIK WW WG+W SPL Y Q AI VNEF
Sbjct: 668 SLARDMVIANTFGSAAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTA 727
Query: 540 NSWKKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFG 599
W +G+ +L R F T+ YWYW+G+ L G+ ILF TLAL++LNP
Sbjct: 728 TRWMTPSAISDTTIGLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLR 787
Query: 600 TSKAFISEE 608
++A + ++
Sbjct: 788 KARAVVLDD 796
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1653 (586.9 bits), Expect = 4.7e-251, Sum P(2) = 4.7e-251
Identities = 343/728 (47%), Positives = 465/728 (63%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
+TLLLGPP GKTTL+ AL+G L+++LK SG+++YNGH + EFVPQ+T+AYISQ+D+HI
Sbjct: 202 LTLLLGPPSCGKTTLLKALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIA 261
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
EMTVRET+ FSARCQGVGSR D+++E+S+REK IIPD ++D +MKA+ EG + ++ T
Sbjct: 262 EMTVRETVDFSARCQGVGSRTDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQT 321
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DYILK+L LD+CA+ ++GD M RGISGGQ+KR+TT EM+VGP ALFMDEI+ GLDSST
Sbjct: 322 DYILKILGLDICAEILIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTA 381
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
F IV SL QF HI + T L+SLLQPAPE Y+LFDDI+L++ G+IVY GP V FF
Sbjct: 382 FQIVKSLQQFAHISSATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDC 441
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GF+CP+RKG+ADFLQEV S+KDQ QYW D PY FV+V+ F+ +G+K+ D L
Sbjct: 442 GFRCPERKGVADFLQEVISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLS 501
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
P+D+ SH AL+ Y + EL AC SRE+LLMKRN FVYIF+ Q++ A I MT
Sbjct: 502 KPYDRSKSHKDALSFSVYSLPNWELFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMT 561
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+F+RT+M D + G Y ALFF L + +G E+SMT +L VFYKQ+ L FYP+WA
Sbjct: 562 VFIRTRMGID-IIHGNSYMSALFFALIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWA 620
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
YA+PA +LK+P+S E VW ++YYVIG+ A RFFKQ++LL V+ S +MFR +AA
Sbjct: 621 YAIPATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAA 680
Query: 481 VGRSMVVANTXXXXXXXXXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
+ +++V + T + W KWG+W +PL Y + + VNEFL
Sbjct: 681 IFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAP 740
Query: 541 SWKKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGT 600
W ++ PN LG +L +RG + Y YW+ + AL GF +LF FTLAL+FL +
Sbjct: 741 RWNQMQPNNFT-LGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTS 799
Query: 601 SKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETD 660
S+A IS++ S E T S ++ ++E D + + T+ T
Sbjct: 800 SRAMISQDKLS-ELQGTEKSTEDSSVRKKTTDSPVKTEEEDKM-----VLPFKPLTV-TF 852
Query: 661 QPKNRGMVLPFEPFSLTFDEITYSV--DMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTA 718
Q N + +P E +D+ + D+ R G+ L L GVSGA + +L
Sbjct: 853 QDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAF-RPGI----LTALMGVSGAGKTTLLDV 907
Query: 719 LMGVTGSG 726
L G SG
Sbjct: 908 LAGRKTSG 915
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5900 | 0.9791 | 0.8343 | N/A | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.6818 | 0.9919 | 0.8476 | yes | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6750 | 0.9742 | 0.8524 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6656 | 0.9855 | 0.8514 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.6920 | 0.9783 | 0.8493 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.6954 | 0.9759 | 0.8461 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6810 | 0.9919 | 0.8476 | N/A | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5258 | 0.9775 | 0.8410 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| PtrPDR12 | pleiotropic drug resistance, ABC transporter family protein (1424 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1245 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-90 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-89 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-68 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 6e-68 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-57 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-52 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-52 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-43 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 9e-40 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-39 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-37 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-36 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-33 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-32 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-32 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-30 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-28 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-27 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 4e-27 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-26 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 9e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-22 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-21 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-21 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-21 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-20 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-20 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-20 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-20 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-19 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 8e-19 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-18 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-18 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-18 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-17 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-17 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 7e-17 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 8e-17 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-16 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-16 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 7e-16 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-16 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 8e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 9e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-15 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-15 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-15 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 4e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 7e-15 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 9e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-14 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-14 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-14 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-14 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-14 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-14 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-14 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 5e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-14 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 9e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-13 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-13 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-13 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-13 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-13 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-13 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-13 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 7e-13 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 7e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-13 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 9e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-12 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-12 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 5e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-12 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-12 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-11 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-11 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-11 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-11 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-11 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-11 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-11 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-11 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-11 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 6e-11 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 6e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 7e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 7e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 7e-11 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-11 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 9e-11 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 9e-11 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-10 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-10 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-10 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-10 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-10 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-10 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-10 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-10 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-10 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-10 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-10 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-10 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-10 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-10 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-10 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-10 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-10 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 6e-10 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-10 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 7e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 7e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 8e-10 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 8e-10 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 9e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 9e-10 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-09 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-09 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-09 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-09 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-09 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-09 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-09 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-09 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-09 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-09 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-09 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 5e-09 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 6e-09 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 6e-09 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 6e-09 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-09 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 6e-09 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 7e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 7e-09 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 8e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 8e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 9e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-08 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-08 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-08 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-08 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-08 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-08 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-08 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 4e-08 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-08 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 5e-08 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 5e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 7e-08 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-08 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 8e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-08 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 9e-08 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 9e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-07 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-07 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-07 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-07 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-07 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-07 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-07 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-07 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-07 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-07 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-07 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-07 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-07 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 6e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-07 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 8e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 8e-07 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 8e-07 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 9e-07 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 9e-07 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-06 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-06 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-06 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-06 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-06 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-06 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-06 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-06 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-06 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-06 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-06 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-06 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-06 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-06 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-06 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-06 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-06 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-06 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-06 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 5e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-06 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 6e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 6e-06 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 6e-06 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 6e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-06 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 6e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-06 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 7e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 7e-06 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 7e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-06 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 7e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 8e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 8e-06 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 9e-06 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 9e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 9e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 9e-06 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-05 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-05 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-05 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-05 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-05 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-05 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-05 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-05 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-05 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-05 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-05 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-05 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-05 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-05 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-05 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 4e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 4e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-05 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 5e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 5e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-05 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 6e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 6e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-05 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 7e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 7e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 7e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-05 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 9e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 9e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 9e-05 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-04 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-04 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-04 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-04 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-04 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-04 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-04 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-04 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-04 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-04 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-04 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-04 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-04 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 3e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-04 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-04 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-04 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-04 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 5e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 5e-04 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 5e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 6e-04 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 7e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 7e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 7e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 8e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 8e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-04 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 0.001 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 0.001 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.001 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 0.001 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 0.001 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.001 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 0.001 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 0.002 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 0.002 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 0.002 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 0.002 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 0.002 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 0.002 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 0.002 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.002 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.002 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 0.002 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 0.002 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.002 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.002 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.002 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.002 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.002 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 0.002 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 0.002 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 0.003 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.003 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.003 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.003 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.003 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.003 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 0.003 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.003 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.003 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 0.003 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 0.004 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 0.004 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 0.004 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1781 bits (4614), Expect = 0.0
Identities = 755/1279 (59%), Positives = 946/1279 (73%), Gaps = 35/1279 (2%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
MTLLLGPP SGKTTL+LALAGKLD SLK SG++TYNG+ ++EFVP++T+AYISQ+D+H+G
Sbjct: 193 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVG 252
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
MTV+ETL FSARCQGVG+RYD+L EL+RREK A I P+A++D+FMKA EG ++++IT
Sbjct: 253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLIT 312
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
DY LK+L LD+C DT+VGDEM+RGISGGQ+KRVTTGEM+VGP LFMDEISTGLDSSTT
Sbjct: 313 DYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 372
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
+ IV L Q H+ T L+SLLQPAPE ++LFDDIIL+S+GQIVYQGP +H+ +FF S
Sbjct: 373 YQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESC 432
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG 300
GFKCP+RKG ADFLQEVTS+KDQEQYW ++PYR+++V EF F+SFHVG +L +EL
Sbjct: 433 GFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELS 492
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMT 360
+PFDK SH AAL KY V K ELLKAC+ +E LLMKRN+FVY+F+ Q++ +A I T
Sbjct: 493 VPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIAST 552
Query: 361 IFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWA 420
+FLRT+MH + DG +Y GAL F + FNG AE+++ I +LPVFYKQRDL F+P W
Sbjct: 553 VFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWT 612
Query: 421 YALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480
+ LP ++L IPISI+E VWV +TYY IGF A RFFKQ LL+ ++ QM++ +FRLIA+
Sbjct: 613 FTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS 672
Query: 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGN 540
V R+M++ANT G+LVLLL+F+LGGF+L + +I WW+W YW SPL Y NA+ VNE
Sbjct: 673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAP 732
Query: 541 SW-KKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFG 599
W K+ + + LG VL+ FTD WYW+GVGAL GF ILF FTLAL++LNP G
Sbjct: 733 RWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLG 792
Query: 600 TSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIET 659
+A ISEE+ LS+ +++ + + + S
Sbjct: 793 KKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANG 852
Query: 660 DQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTAL 719
PK RGMVLPF P +++FD++ Y VDMP EMK +GV +D+L LL V+GAFRPGVLTAL
Sbjct: 853 VAPK-RGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTAL 911
Query: 720 MGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVY 779
MGV+G+GKTTLMDVLAGRKT GYI G+I ISG+PK QETF RISGYCEQNDIHSP VTV
Sbjct: 912 MGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971
Query: 780 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIA 839
ESL+YSA+LRL EV+ + + MFV+EVMELVEL+ L+ A+VGLPGV GLSTEQRKRLTIA
Sbjct: 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIA 1031
Query: 840 VELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD--- 896
VELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1032 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1091
Query: 897 -------------------------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDF 931
IPGV KI++ YNPATWMLEV++ + E+ LG+DF
Sbjct: 1092 LMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDF 1151
Query: 932 AAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPH 991
A YKSS LY+ NKAL++ELS P PG+ +LYFA QY S + Q +CLWKQ W+Y R+P
Sbjct: 1152 AEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPD 1211
Query: 992 YTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVD 1051
Y VRF FT+ +L+ GT+FW +GTK + DL +G MY AV F+G+ N S+VQP+V
Sbjct: 1212 YNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVA 1271
Query: 1052 LERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFL 1111
+ER+VFYRE+ AGMYS + YA AQV+ EIPY+ +Q Y+LIVYAM+ FEWTAAKFFWF
Sbjct: 1272 VERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFY 1331
Query: 1112 FFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYW 1171
F FFS LYFT++GMM V+ TPN +A+I + FYGL+N+ SGF IPR +IP WW W YW
Sbjct: 1332 FISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYW 1391
Query: 1172 ANPIAWTLYGFFASQFGDVQDRLE-----SGETVKQFLRSYYGFKHDFLGAVAAVVFVLP 1226
P+AWT+YG SQ+GDV+D ++ T+K +++ +YG+ DF+G VAAV+
Sbjct: 1392 ICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFT 1451
Query: 1227 SLFAFVFALGIRVLNFQKR 1245
FAF+FA IR LNFQ R
Sbjct: 1452 VFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1038 bits (2687), Expect = 0.0
Identities = 382/1371 (27%), Positives = 609/1371 (44%), Gaps = 196/1371 (14%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKA-SGKVTYNGHDMHEFVPQRTA--AYISQHDI 57
+T++LG PGSG +TL+ +A D G +TY+G E Y ++ D+
Sbjct: 89 LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDV 148
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
H +TV ETL F+ARC+ +R D + +
Sbjct: 149 HFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKH------------------------- 183
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
I D + L +T VG++ +RG+SGG+RKRV+ E +G A D + GLDS
Sbjct: 184 -IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFF 237
+T + +L +IL+ T L+++ Q + + Y LFD +I++ +G +Y GP + +Q+F
Sbjct: 243 ATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYF 302
Query: 238 ISMGFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEP-YRFVTVKEFVHAFQSFHVGRKLG 296
MGFKCP R+ ADFL +TS + Q ++ R T +EF +++ +L
Sbjct: 303 EKMGFKCPDRQTTADFLTSLTSPA-ERQIKPGYEKKVPR--TPQEFETYWRNSPEYAQLM 359
Query: 297 DELGIPFDK----------KNSHPA-----ALTTRKYGVGKKELLKACFSREHLLMKRNS 341
E+ D+ + SH A + Y V +K C +R L MK N
Sbjct: 360 KEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNP 419
Query: 342 FVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTI 401
+F + + +A+I ++F + +D GALFF + F+ + EI+
Sbjct: 420 SFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEIASMY 476
Query: 402 AKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQY 461
P+ K R Y A A+ + I +IP I+E V+ + Y+++ F AGRFF
Sbjct: 477 EARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYL 536
Query: 462 LLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYW 521
L+L I S +FR I AV +++ A T +++LL L + GF + R + W KW Y+
Sbjct: 537 LILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYY 596
Query: 522 CSPLMYAQNAIVVNEFLGNSW--KKILP-----------NKTKPL-----GIEVLDSRGF 563
+PL YA +++VNEF G + + +P NK + G + +D +
Sbjct: 597 VNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDY 656
Query: 564 FTDAY-----WYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSRT 618
++ W G + GF + F F + L F +
Sbjct: 657 LKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFR---------- 706
Query: 619 GGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFSLTF 678
R + ++ +S S + IE G VL +
Sbjct: 707 -----------------RGSLKR-AKKAGETSASNKNDIE------AGEVLGSTDLTDES 742
Query: 679 DEITYSVDMPQEMKRR-----------GVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGK 727
D++ DM +E + +K V+LN V G +PG LTALMG +G+GK
Sbjct: 743 DDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGK 802
Query: 728 TTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAW 787
TTL++VLA R T G ITG + +F R GY +Q D+H P TV ESL +SA+
Sbjct: 803 TTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAY 862
Query: 788 LRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANP- 846
LR V+ + +VEEV++L+E+ A+VG+PG GL+ EQRKRLTI VELVA P
Sbjct: 863 LRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPK 921
Query: 847 SIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD---------- 896
++F+DEPTSGLD++ A + + +R D G+ ++CTIHQPS +FE FD
Sbjct: 922 LLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQ 981
Query: 897 ---AG--------------IPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSE 939
G G K + NPA WMLEV + D+ ++++S
Sbjct: 982 TVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSS 1041
Query: 940 LYRINKALIQELSKPAPGSKELYFAN---QYPLSFFTQCMACLWKQHWSYSRNPHYTAVR 996
Y+ K + L +++ + +Y S + Q LW+ Y R P Y +
Sbjct: 1042 EYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSK 1101
Query: 997 FLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSV 1056
F TIF +L G F+ +GT Q L N M +++A L + P V
Sbjct: 1102 FFLTIFAALFIGFTFFKVGTSL---QGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLY 1158
Query: 1057 FYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAK-------FFW 1109
RE+ + +S +A+ AQ+ +EIPY V + I Y +GF W A+K
Sbjct: 1159 EVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVL 1218
Query: 1110 FLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWS 1169
F LYF+ G M++++ PN A+++++L + + G + P +R+P +W +
Sbjct: 1219 FWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFM 1278
Query: 1170 YWANPIAWTLYGFFASQFGDVQDRLE----------SGETVKQFLRSY------------ 1207
Y +P + + ++ DV + SG+T ++++ Y
Sbjct: 1279 YRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPN 1338
Query: 1208 ---------YGFKHDFLGAVAAVVFVLPSLF----AFVFALGIRVLNFQKR 1245
Y + +DFL +++ F AF+F I + F
Sbjct: 1339 ATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFNIIATVFFYWL 1389
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 305 bits (782), Expect = 1e-90
Identities = 166/525 (31%), Positives = 256/525 (48%), Gaps = 42/525 (8%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-ITGNITISGYPKNQETFTR 761
LL VSG +PG L A+MG +G+GKTTLM+ LA R +G +G++ ++G P + +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 762 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG 821
IS Y +Q+D+ P +TV E L++ A LR+ V K + V+EV++ + L +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 822 LPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTV 880
+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 881 VCTIHQPSIDIFEAFD------------AGIPG--VSKIRDG-------YNPATWMLEVT 919
+CTIHQPS ++FE FD G P V D YNPA + ++V
Sbjct: 220 ICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVL 279
Query: 920 A--PSQEIALGVDFAAI---YKSSELYRINKALIQELSKPAPG---SKELYFANQYPLSF 971
A P E I + S++ R S A G E Y S+
Sbjct: 280 AVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASW 339
Query: 972 FTQCMACLWKQHW-SYSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGF 1030
+TQ L K+ W S R+P VR + T+ +++ G ++ G Q+ + N G
Sbjct: 340 WTQ-FYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT---QKGVQNINGA 395
Query: 1031 MYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPY 1090
+++ + + NV V V E VF RE +G+Y AY A+ + E+P + A +
Sbjct: 396 LFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALF 455
Query: 1091 SLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWN 1150
+ I Y MIG A F FLF + T FG ++ + +A V F +
Sbjct: 456 TSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFL 515
Query: 1151 IVSGFIIPRTRIPVWWRWSYWANPIAWTLYGF---FASQFGDVQD 1192
+ GF I IPV+++W + ++W YG +Q+ DV +
Sbjct: 516 LFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDVDN 557
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 285 bits (732), Expect = 4e-89
Identities = 101/224 (45%), Positives = 132/224 (58%), Gaps = 47/224 (20%)
Query: 673 PFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMD 732
LT+ + Y+V + ++ LLN +SG +PG LTALMG +G+GKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKGGKRQ---------LLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 733 VLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS 792
VLAGRKT G ITG I I+G P + + F R +GY EQ D+HSP +TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 793 EVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 852
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 853 EPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 896
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFD 177
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 1e-68
Identities = 88/222 (39%), Positives = 129/222 (58%), Gaps = 44/222 (19%)
Query: 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL 734
+L+F +T +V LL VSG +PG LTA+MG +G+GK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 735 AGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEV 794
AGR+T ++G + I+G P ++ +F +I GY Q+DI P +TV E+L+++A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 795 NSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 854
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 855 TSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 896
TSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFD 180
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 6e-68
Identities = 160/609 (26%), Positives = 268/609 (44%), Gaps = 75/609 (12%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
++G G+GKTTLM ALA + +K SG V NG + + +AY+ Q D+ I +T
Sbjct: 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115
Query: 64 VRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYI 123
VRE L F A + M ++++EK ++ D +
Sbjct: 116 VREHLMFQAHLR-------MPRRVTKKEKRERV------------------------DEV 144
Query: 124 LKVLDLDVCADTVVGDE-MLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 182
L+ L L CA+T +G ++G+SGG+RKR+ L+ LF DE ++GLDS +
Sbjct: 145 LQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS 204
Query: 183 IVNSLGQFNHILNG--TALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
+V L + T + ++ QP+ E++ LFD IIL+++G++ Y G + FF +
Sbjct: 205 VVQVL---KGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDL 261
Query: 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHA-FQSFHVGRKLGDEL 299
G CP+ ADF +V + P +E + SF V D L
Sbjct: 262 GHPCPENYNPADFYVQVLA-----------VIPGSENESRERIEKICDSFAVSDIGRDML 310
Query: 300 GIPFDKKNSHPAA-LTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFR---LTQVMFLA 355
S A L + + +++ + L+KR S++ + R L +V +
Sbjct: 311 VNTN--LWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR-SWLSVLRDPLLLKVRLIQ 367
Query: 356 VIGMTIFLRTKMHRDSLT-DGVIYT-GALFFILTTITFNGMAEISMTI-AKLPVFYKQRD 412
+ I + LT GV GALF LT +TF + + A+LPVF ++
Sbjct: 368 TMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETR 427
Query: 413 LRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSS 472
Y AY L I ++P+ I+ +++ +TY++IG S A F L+ +V +++
Sbjct: 428 SGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVAT 487
Query: 473 AMFRLIAAVGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAI 532
+ LI+ S +A T G ++ + GGF ++ D I ++KW + S Y +
Sbjct: 488 SFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGL 547
Query: 533 VVNEFLGNSWKKILP------NKTKPL---GIEVLDSRGFFTDAYWYWLGVGALTGFIIL 583
++N+ W + N T P G +L++ F +L + L I
Sbjct: 548 LINQ-----WSDVDNIECTSANTTGPCPSSGEVILETLSFRNAD--LYLDLIGLVILIFF 600
Query: 584 FQFGFTLAL 592
F+ AL
Sbjct: 601 FRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 1e-57
Identities = 131/560 (23%), Positives = 244/560 (43%), Gaps = 86/560 (15%)
Query: 697 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY---ITGNITISGYP 753
+L + G +PG LT ++G GSG +TL+ +A T G+ + G IT G
Sbjct: 70 DTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS-NTDGFHIGVEGVITYDGIT 128
Query: 754 KNQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRL-SSEVNSKTREMFVEEVMELV 810
+ + + Y + D+H P++TV E+L ++A + + + +RE + + + ++
Sbjct: 129 PEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVY 188
Query: 811 E----LNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA--- 863
L+ R VG V G+S +RKR++IA + I D T GLD+ A
Sbjct: 189 MATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEF 248
Query: 864 AVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDGY-------------- 909
++T N +DT T + I+Q S D +E FD V + +GY
Sbjct: 249 IRALKTSANILDT--TPLVAIYQCSQDAYELFDK----VIVLYEGYQIYFGPADKAKQYF 302
Query: 910 -----------NPATWMLEVTAPSQEIALG----------VDFAAIYKSSELYRINKALI 948
A ++ +T+P++ +F +++S Y L+
Sbjct: 303 EKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEY---AQLM 359
Query: 949 QELSKP-----APGSKELYF-------------ANQYPLSFFTQCMACLWKQHWSYSRNP 990
+E+ + +KE Y ++ Y +SF Q CL + NP
Sbjct: 360 KEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNP 419
Query: 991 HYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYF---LGVLNVSSVQ 1047
+T I ++LI ++F+++ T+ D ++ G ++ A+ F +L ++S+
Sbjct: 420 SFTLFMVFGNIIMALILSSVFYNLPKNTS---DFYSRGGALFFAILFNAFSSLLEIASMY 476
Query: 1048 PVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKF 1107
R + + + +Y P A A A ++ EIP+ +++ +++I+Y M+ F TA +F
Sbjct: 477 E----ARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRF 532
Query: 1108 FWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWR 1167
F++L +F L + + A T A + + +I +GF IPR + W +
Sbjct: 533 FFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSK 592
Query: 1168 WSYWANPIAWTLYGFFASQF 1187
W Y+ NP+A+ ++F
Sbjct: 593 WIYYVNPLAYAFESLMVNEF 612
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 2e-52
Identities = 75/200 (37%), Positives = 115/200 (57%), Gaps = 5/200 (2%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGYPKNQ 756
+ +LN VS G + A++G +GSGKTTL+D ++GR G T G I +G P+
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP 76
Query: 757 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 816
+ F + Y Q+DI P +TV E+L Y+A LRL + + R+ E + L +L R
Sbjct: 77 DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK-RVEDVLLRDLALTR 135
Query: 817 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 876
+G V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+
Sbjct: 136 ---IGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR 192
Query: 877 GRTVVCTIHQPSIDIFEAFD 896
R V+ TIHQP D+F FD
Sbjct: 193 NRIVILTIHQPRSDLFRLFD 212
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 2e-52
Identities = 64/216 (29%), Positives = 111/216 (51%), Gaps = 7/216 (3%)
Query: 973 TQCMACLWKQHWSYSRNPHYT-AVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFM 1031
TQ A L ++ R+P R + + ++L+FGT+F ++ T N G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDT----SLGGLNRPGLL 56
Query: 1032 YVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYS 1091
+ ++ F +++ + PV ER V RE + +YSP AY A++L+E+P +QA +
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1092 LIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNI 1151
LIVY M+G + +FF FL + + L + G+ + A P+ AS + L +
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 1152 VSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQF 1187
+SGF IP +P W +W Y+ NP+ + + A++F
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 1e-43
Identities = 65/216 (30%), Positives = 111/216 (51%), Gaps = 8/216 (3%)
Query: 324 ELLKACFSREHLLMKRNSFV-YIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGAL 382
LKA RE L R+ + ++RL Q + +A++ T+F D+ G+ G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 383 FFILTTITFNGMAEISMT-IAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWV 441
FF + F+ + IS I + V ++ Y AY L ++++PIS+++ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 442 FMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLVLLLLFV 501
+ Y+++G + RFF L+LL+ +S + IAA+ S A+ G L+LL L +
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 502 LGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEF 537
L GF + D + W +W Y+ +PL YA A+ NEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 9e-40
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 12/201 (5%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP--KN 755
L+GVS PG + L+G G+GKTTL+ +LAG +G I + GY K
Sbjct: 15 GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKE 72
Query: 756 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 815
R GY Q P +TV E+L + A L S+ ++ R +EE++EL L
Sbjct: 73 PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDK 129
Query: 816 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD 875
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R
Sbjct: 130 ANKKVR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAK 184
Query: 876 TGRTVVCTIHQPSIDIFEAFD 896
G + + E D
Sbjct: 185 EGGVTILLSTHILEEAEELCD 205
|
Length = 293 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 3e-39
Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 38/229 (16%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
+ +LG GSGKTTL+ A++G+++ SG++ +NG Q+ AY+ Q DI +
Sbjct: 35 VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLP 94
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
+TVRETL ++A R+ + I V
Sbjct: 95 GLTVRETLTYTAIL------------RLPRKSSDA------IRKKRVEDVLLRD------ 130
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG-EMLVGPAHALFMDEISTGLDSST 179
A T +G +++GISGG+R+RV+ ++L P L +DE ++GLDS T
Sbjct: 131 -----------LALTRIGGNLVKGISGGERRRVSIAVQLLWDPK-VLILDEPTSGLDSFT 178
Query: 180 TFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
++V++L Q N ++++ QP +++ LFD I+L+S G+IVY G
Sbjct: 179 ALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 1e-37
Identities = 38/91 (41%), Positives = 57/91 (62%)
Query: 138 GDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGT 197
G+E +RGISGG+RKRV+ E LV A L D + GLDSST I+ + +L T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 198 ALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
+SL Q + E+Y+LFD ++++ +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 2e-36
Identities = 79/242 (32%), Positives = 138/242 (57%), Gaps = 19/242 (7%)
Query: 673 PFSLTFDEITYSVDMPQEMKRRGVHDDKLV-----------------LLNGVSGAFRPGV 715
P +L F ++ Y V + MK +G + +++ +LNGV+G PG
Sbjct: 37 PITLKFMDVCYRVKF-ENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 716 LTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPY 775
+ A++G +GSGK+TL++ LAGR TG I + ++ R G+ Q+DI P+
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 776 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 835
+TV E+L++ + LRL + + + + E V+ + L ++G + G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 836 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 895
++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V ++HQPS +++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 896 DA 897
D+
Sbjct: 275 DS 276
|
Length = 659 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (348), Expect = 2e-33
Identities = 128/516 (24%), Positives = 241/516 (46%), Gaps = 62/516 (12%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
+LGP GSGK+TL+ ALAG++ + +G + N + + +RT +++Q DI +T
Sbjct: 99 VLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILKRTG-FVTQDDILYPHLT 156
Query: 64 VRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYI 123
VRETL F + + S L+++EK ++ + +
Sbjct: 157 VRETLVFCSLLRLPKS-------LTKQEKI------------------------LVAESV 185
Query: 124 LKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG-EMLVGPAHALFMDEISTGLDSSTTFH 182
+ L L C +T++G+ +RGISGG+RKRV+ EML+ P+ L +DE ++GLD++ +
Sbjct: 186 ISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-LLILDEPTSGLDATAAYR 244
Query: 183 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGF 242
+V +LG T + S+ QP+ VY +FD ++++S+G+ ++ G +F S+GF
Sbjct: 245 LVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGF 303
Query: 243 KCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKE-FVHAFQSFHVGR-KLGDELG 300
ADFL ++ + Q ++P VK+ V ++ + + K E+
Sbjct: 304 SPSFPMNPADFLLDLANGVCQTDGVSEREKP----NVKQSLVASYNTLLAPKVKAAIEMS 359
Query: 301 IPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKR-------NSFVYIFRLTQVMF 353
+ +T+++ + + F++ +L++R SF R+ QV+
Sbjct: 360 HFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESF-NTLRVFQVIA 418
Query: 354 LAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLP----VFYK 409
A++ ++ H D D G LFFI F G+ ++ P +F K
Sbjct: 419 AALLAGLMW----WHSDFR-DVQDRLGLLFFI---SIFWGVFPSFNSVFVFPQERAIFVK 470
Query: 410 QRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQ 469
+R Y +Y + + +P+ ++ ++++ +TY++ G G F L+LL
Sbjct: 471 ERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVL 530
Query: 470 MSSAMFRLIAAVGRSMVVANTFGSLVLLLLFVLGGF 505
+S + + A A+T ++ +L + GGF
Sbjct: 531 VSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF 566
|
Length = 659 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 2e-32
Identities = 141/561 (25%), Positives = 249/561 (44%), Gaps = 90/561 (16%)
Query: 700 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-ITGNITISGYPKNQET 758
KL +L SG +P +T L+G SGKTTL+ LAG+ ++G IT +GY N+
Sbjct: 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV 236
Query: 759 FTRISGYCEQNDIHSPYVTVYESLLYSAWLR-------LSSEVNSKTRE----------- 800
+ S Y QND+H +TV E+L +SA + L SE+ + ++
Sbjct: 237 PRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDL 296
Query: 801 -------------MFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPS 847
+ + ++++ L+ + +VG + G+S Q+KR+T +V
Sbjct: 297 FMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTK 356
Query: 848 IIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDAGIPGVSKIR 906
+FMDE ++GLD+ +++ ++ V T TV+ ++ QP+ + F+ FD I +S+ +
Sbjct: 357 TLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFD-DIILLSEGQ 415
Query: 907 DGYN----------------------PATWMLEVTAPSQEIALGVD------------FA 932
Y A ++ EVT+ + D FA
Sbjct: 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFA 475
Query: 933 AIYKSSELYRINKALIQELSKPAPGSK----ELYFANQYPLSFFTQCMACLWKQHWSY-S 987
+KS + + L ELS P S+ L F ++Y + AC W + W
Sbjct: 476 ERFKS---FHVGMQLENELSVPFDKSQSHKAALVF-SKYSVPKMELLKAC-WDKEWLLMK 530
Query: 988 RNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYV-AVYFLGVLNVSS- 1045
RN + + I ++ I T+F T ++D G +Y+ A+ F ++N+ +
Sbjct: 531 RNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEED-----GALYIGALLFSMIINMFNG 585
Query: 1046 -VQPVVDLER-SVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWT 1103
+ + ++R VFY+++ + P + L+ IP +++ + +I Y IGF
Sbjct: 586 FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPE 645
Query: 1104 AAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIP 1163
A++FF L +F ++ + IA+ L L ++ GFI+P+ IP
Sbjct: 646 ASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIP 705
Query: 1164 VWWRWSYWANPIAWTLYGFFA 1184
WW W+YW +P++ YGF A
Sbjct: 706 NWWEWAYWVSPLS---YGFNA 723
|
Length = 1470 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 3e-32
Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 51/273 (18%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ--RTAAYISQHDIH 58
+ LLGP G+GKTTL+ LAG L + SG++ G+D+ + + R Y+ Q
Sbjct: 33 IFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSL 89
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANV 118
E+TVRE L F AR G+ + + E
Sbjct: 90 YPELTVRENLEFFARLYGLSKEEA------------------------EERIEE------ 119
Query: 119 ITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS 178
+L++ L+ A+ V R +SGG ++R++ L+ L +DE ++GLD
Sbjct: 120 ----LLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 179 TTFHIVNSLGQFNHILNGTALIS--LLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQF 236
+ I L + T L+S +L+ E L D +I+++DG+I+ +G E +++
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRVIILNDGKIIAEGTPEELKEK 227
Query: 237 FISMGFKC--PKRKGIADFLQEVTSRKDQEQYW 267
F G P+R +A+ L+ + K +E+
Sbjct: 228 FGGKGVIELEPERLELAELLEGLKLVKGEEELA 260
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 3e-30
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 39/215 (18%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR-KTRGYITGNITISGYP--KN 755
K+ +L SG +PG + ++G GSG +TL+ LA R + + G+I +G P +
Sbjct: 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF 77
Query: 756 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 815
E + Y + D+H P +TV E+L ++ +
Sbjct: 78 AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------------------- 111
Query: 816 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD 875
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R D
Sbjct: 112 -----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMAD 166
Query: 876 -TGRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDGY 909
T +++Q S +I++ FD V + +G
Sbjct: 167 VLKTTTFVSLYQASDEIYDLFDK----VLVLYEGR 197
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 17/186 (9%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFT- 760
++ +S G + L+G G+GKTT + +L G R T +G I+GY +
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 761 -RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 819
+ GYC Q D +TV E L + A L+ + + VE ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKR 130
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 879
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 880 VVCTIH 885
++ T H
Sbjct: 185 IILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 4e-28
Identities = 68/189 (35%), Positives = 93/189 (49%), Gaps = 14/189 (7%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP--KNQ 756
K L+GVS PG+ L+G G+GKTTLM +LA G I I G K
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 757 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 816
+ R GY Q P TV E L Y AWL+ + SK + V+EV+ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 817 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 876
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD + R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 877 GRTVVCTIH 885
R V+ + H
Sbjct: 179 DRIVILSTH 187
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIH 58
M L+LG PGSG +TL+ ALA + + ++ G + YNG EF Y+S+ D+H
Sbjct: 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94
Query: 59 IGEMTVRETLAFSARCQG 76
+TVRETL F+ RC+G
Sbjct: 95 FPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-27
Identities = 38/65 (58%), Positives = 45/65 (69%)
Query: 542 WKKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTS 601
W K + LG VL SRG FT+AYWYW+GVGAL GF ILF FTLAL++LNP G S
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 602 KAFIS 606
+A +S
Sbjct: 61 QAIVS 65
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 6e-26
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 23/202 (11%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQET---F 759
L+ +S + G ++G GSGK+TL+ +L G G +G + + G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 760 TRISGYCEQNDIHSP-----YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP 814
R G QN P TV E + + E + R VEE +ELV L
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLEG 126
Query: 815 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 874
LR LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 127 LRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 875 DTGRTVVCTIHQPSIDIFEAFD 896
G+T++ H + E D
Sbjct: 182 AEGKTIIIVTHDLD-LLLELAD 202
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 9e-23
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
+T ++GP G+GK+TL+ ALAG+ + L SG+V NG + + ++ Y+ Q DI
Sbjct: 37 LTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHP 95
Query: 61 EMTVRETLAFSARCQGV 77
+TVRETL F+A+ +G+
Sbjct: 96 TLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 5e-22
Identities = 64/207 (30%), Positives = 96/207 (46%), Gaps = 20/207 (9%)
Query: 692 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNIT 748
K G +K+ L GVS + G A++G +GSGK+TL+++L G R T G +
Sbjct: 8 KTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTD 67
Query: 749 ISGYPKNQETFTR---ISGYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMFV 803
IS + + R I G+ Q+ + P +T E++ L L+ V K R
Sbjct: 68 ISKLSEKELAAFRRRHI-GFVFQS--FNLLPDLTALENVELP--LLLAG-VPKKERRERA 121
Query: 804 EEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 863
EE++E V L + LS Q++R+ IA L +P II DEPT LD+
Sbjct: 122 EELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176
Query: 864 AVVMRTVRNTV-DTGRTVVCTIHQPSI 889
VM +R + G T+V H P +
Sbjct: 177 KEVMELLRELNKEAGTTIVVVTHDPEL 203
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 1e-21
Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 21/200 (10%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 761
L VS +PG A++G G+GK+TL+ + G + T G +I + G P +E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSG----SIRVFGKPLEKER-KR 69
Query: 762 ISGYCEQN---DIHSPYVTVYESLLYSAW--LRLSSEVNSKTREMFVEEVMELVELNPLR 816
I GY Q D P ++V + +L + L ++ + V+E +E V L+ L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAK-VDEALERVGLSELA 126
Query: 817 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 876
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 127 DRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE 181
Query: 877 GRTVVCTIHQPSIDIFEAFD 896
G T++ H + + E FD
Sbjct: 182 GMTILVVTHDLGL-VLEYFD 200
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 1e-21
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 14/192 (7%)
Query: 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG---YPKNQET 758
+L+ +S + G +T ++G GSGK+TL+ LAG +G + + G + +
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG--LLKPKSGEVLLDGKDIASLSPKE 73
Query: 759 FTRISGYCEQNDIHSPYVTVYESLLYS--AWLRLSSEVNSKTREMFVEEVMELVELNPLR 816
+ Y Q+ +TVYE +L L L + + E+ VEE +EL+ L L
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI-VEEALELLGLEHLA 132
Query: 817 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN-TVD 875
V+ LS +R+R+ IA L I+ +DEPTS LD V+ +R+ +
Sbjct: 133 DR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187
Query: 876 TGRTVVCTIHQP 887
G TVV +H
Sbjct: 188 KGLTVVMVLHDL 199
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-21
Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 16/206 (7%)
Query: 695 GVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754
V +L +S + G +TAL+G G+GK+TL+ + G +G I I G P
Sbjct: 11 TVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPV 68
Query: 755 NQETFTRISGYCEQNDIHSPY--VTVYESLLYSAWLRLS--SEVNSKTREMFVEEVMELV 810
+ GY Q +TV + +L + + +N K +E V+E +E V
Sbjct: 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK-VDEALERV 127
Query: 811 ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV 870
+ LR +G LS Q++R+ +A L NP ++ +DEP +G+D + +
Sbjct: 128 GMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLL 182
Query: 871 RNTVDTGRTVVCTIHQPSIDIFEAFD 896
+ G+TV+ H D+
Sbjct: 183 KELRQEGKTVLMVTH----DLGLVMA 204
|
Length = 254 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 3e-21
Identities = 35/87 (40%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 142 LRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALIS 201
LRG+SGG+RKRV+ LV LF+DE ++GLDSS+ +++ L + T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICS 167
Query: 202 LLQPAPEVYNLFDDIILVSDGQIVYQG 228
+ QP+ E++ LFD ++L+S G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 90.9 bits (227), Expect = 5e-21
Identities = 43/186 (23%), Positives = 70/186 (37%), Gaps = 52/186 (27%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYP--KNQETF 759
L+ +S G + L+G G+GKTTL+ ++ G + G I + G K E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 760 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 819
R GY + +TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLSG--------------------------------- 98
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 879
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 99 -------G----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 880 VVCTIH 885
++ + H
Sbjct: 148 ILLSSH 153
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 20/201 (9%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKN 755
+ L+ +S PG AL+G +G GKTTL+ ++AG R G I ++G P
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE 70
Query: 756 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 815
+ I G Q+ P++TV E++ + L+L ++ R V E++ELV L L
Sbjct: 71 R---RNI-GMVFQDYALFPHLTVAENIAFG--LKLRGVPKAEIRAR-VRELLELVGLEGL 123
Query: 816 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT-V 874
+ LS Q++R+ +A L PS++ +DEP S LDA+ + ++
Sbjct: 124 LNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178
Query: 875 DTGRTVVCTIHQPSIDIFEAF 895
+ G T + H D EA
Sbjct: 179 ELGITTIYVTH----DQEEAL 195
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-20
Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 19/186 (10%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFT 760
+L+ +S G + AL G G+GKTTL +LAG +++ G +I ++G P +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERR 70
Query: 761 RISGYCEQN-DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 819
+ GY Q+ D +V E LL L+ N + E V++ ++L L++
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG--LKELDAGNEQ-----AETVLKDLDLYALKERH 123
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 879
P LS Q++RL IA L++ ++ DEPTSGLD + V +R G+
Sbjct: 124 ---P--LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178
Query: 880 VVCTIH 885
V+ H
Sbjct: 179 VIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 3e-20
Identities = 60/239 (25%), Positives = 97/239 (40%), Gaps = 61/239 (25%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAA-----YISQHDIH 58
LLG G+GKTT + L G+L + SG NG+ + R AA Y Q D
Sbjct: 33 LLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRT---DRKAARQSLGYCPQFDAL 86
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANV 118
E+TVRE L F AR +G+ E
Sbjct: 87 FDELTVREHLRFYARLKGLPKS----------------------------------EIKE 112
Query: 119 ITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS 178
+ +L+VL L A+ +SGG +++++ L+G L +DE ++GLD +
Sbjct: 113 EVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPA 167
Query: 179 TTFHIVNSLGQFNHILNGTALI----SLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
+ I + + + G ++I S+ E L D I ++SDG++ G + +
Sbjct: 168 SRRAIWDLI---LEVRKGRSIILTTHSMD----EAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 4e-20
Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 23/209 (11%)
Query: 692 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNIT 748
K G+ +K+ L V+ G A++G +GSGK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 749 ISGYPKNQET-FTRIS-GYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMFVE 804
++ + + R G+ QN + P +TV E++ + S K +
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELL 126
Query: 805 EVMELVEL---NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
EV+ L + + LS Q++R+ IA L+ NP II DEPT LD++
Sbjct: 127 EVLGLEDRLLKKKPSE----------LSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176
Query: 862 AAAVVMRTVRNTV-DTGRTVVCTIHQPSI 889
A V+ +R + G+T++ H P +
Sbjct: 177 TAKEVLELLRELNKERGKTIIMVTHDPEL 205
|
Length = 226 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 2e-19
Identities = 49/196 (25%), Positives = 74/196 (37%), Gaps = 50/196 (25%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 760
LN VS G + AL+G +GSGK+TL+ +AG G I ++
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75
Query: 761 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 820
R G Q+ P++TV E++
Sbjct: 76 RRIGMVFQDFALFPHLTVLENIAL------------------------------------ 99
Query: 821 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRT 879
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G T
Sbjct: 100 ------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT 153
Query: 880 VVCTIHQPSIDIFEAF 895
VV H D+ EA
Sbjct: 154 VVLVTH----DLDEAA 165
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 3e-19
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 32/199 (16%)
Query: 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ- 756
LV L+ VS + RPG + L+G G+GKTTL ++++G R T G + I+G P ++
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 757 ------ETFTRISGYCEQNDIHSPYVTVYESLL--------YSAWLRLSSEVNSKTREMF 802
TF + P +TV E+++ L + + RE
Sbjct: 73 ARLGIGRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARER- 123
Query: 803 VEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 862
EE++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 124 AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEE 178
Query: 863 AAVVMRTVRNTVDTGRTVV 881
+ +R + G TV+
Sbjct: 179 TEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 5e-19
Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 16/195 (8%)
Query: 697 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 756
+ + L VS G L+G GSGK+TL+ +L G +G + + G +
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTSS 70
Query: 757 ETFT----RISGYCEQN-DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 811
E + G QN D TV + + + L V E +ELV
Sbjct: 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLGLPREEIEER--VAEALELVG 127
Query: 812 LNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 871
L L LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++
Sbjct: 128 LEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 872 NTV-DTGRTVVCTIH 885
+ G+T++ H
Sbjct: 183 KLKEEGGKTIIIVTH 197
|
Length = 235 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 8e-19
Identities = 55/196 (28%), Positives = 84/196 (42%), Gaps = 26/196 (13%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYP--K 754
++GV+ R G + +G G+GKTT + +L R T +G ++GY +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT----SGTARVAGYDVVR 59
Query: 755 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAW--LRLSSE---VNSKTREMFVEEVMEL 809
R G Q Y +V E L + L + + E EE++EL
Sbjct: 60 EPRKVRRSIGIVPQ------YASVDEDL--TGRENLEMMGRLYGLPKDEAEERAEELLEL 111
Query: 810 VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 869
EL VG S R+RL IA L+ P ++F+DEPT+GLD R +
Sbjct: 112 FELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY 166
Query: 870 VRNTVDTGRTVVCTIH 885
+R + G T++ T H
Sbjct: 167 IRALKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 12/196 (6%)
Query: 692 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG 751
KR + ++GVS +PG +T L+G G+GKTT + +LAG G T+ G
Sbjct: 9 KRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDG 66
Query: 752 YPKNQETF--TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL 809
+ +E R G+ + +T E+L Y A L R +EE+ +
Sbjct: 67 FDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR---LEELADR 123
Query: 810 VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 869
+ + L VG G ST R+++ IA LV +P ++ +DEPT+GLD A +
Sbjct: 124 LGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREF 178
Query: 870 VRNTVDTGRTVVCTIH 885
+R G+ ++ + H
Sbjct: 179 IRQLRALGKCILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 5e-18
Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 16/188 (8%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 761
L G++ A G + AL+G G+GK+TL+ L G R G + + Y + R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 762 IS-GYCEQN-DIHSPYVTVYESLLYSAW-LRLS-SEVNSKTREMFVEEVMELVELNPLRQ 817
G Q+ D V + + + L LS +EV + V E + V + LR+
Sbjct: 68 QRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERR-----VREALTAVGASGLRE 122
Query: 818 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTG 877
LS ++KR+ IA + P ++ +DEPT+GLD ++ +R G
Sbjct: 123 RPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEG 177
Query: 878 RTVVCTIH 885
TVV + H
Sbjct: 178 MTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 5e-18
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 761
L+ +S + G + +G G+GKTT M ++ G + G IT Y KN E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 762 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG 821
I E + P +T E+L A L + ++EV+++V L + V
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKDSAKKKVK 125
Query: 822 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVV 881
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 882 CTIHQ 886
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 6e-18
Identities = 45/190 (23%), Positives = 73/190 (38%), Gaps = 42/190 (22%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQET 758
+L+ +S + G + ++G G+GK+TL+ LAG +G I + G
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAG--LLKPSSGEILLDGKD----- 62
Query: 759 FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 818
SL R + +V + +EL+ L L
Sbjct: 63 --------------------LASLSPKELARKIA---------YVPQALELLGLAHLADR 93
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TG 877
N LS +R+R+ +A L P I+ +DEPTS LD ++ +R G
Sbjct: 94 -----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERG 148
Query: 878 RTVVCTIHQP 887
+TVV +H
Sbjct: 149 KTVVMVLHDL 158
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 7e-18
Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 27/203 (13%)
Query: 697 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK-- 754
+ D L+ ++ + G LTAL+G +G+GK+TL+++L G G I ++G
Sbjct: 330 YPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRD 387
Query: 755 -NQETFTRISGYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV 810
+ E + + + QN PY+ T+ E++L + + E + ++
Sbjct: 388 LSPEAWRKQISWVSQN----PYLFAGTIRENILLAR--------PDASDEE-IIAALDQA 434
Query: 811 ELNPLRQALVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 865
L GL V GLS Q +RL +A L++ S++ +DEPT+ LDA +
Sbjct: 435 GLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI 494
Query: 866 VMRTVRNTVDTGRTVVCTIHQPS 888
+++ ++ +TV+ H+
Sbjct: 495 ILQALQELAK-QKTVLVITHRLE 516
|
Length = 559 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 2e-17
Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 17/209 (8%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK--TRGYITGN-ITISGYPKNQETFT 760
L+G++ + G L+G +G+GK+TL+ ++ + T G I N +S +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 761 RIS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 819
R G Q+ P VYE++ ++ EV + V +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFAL------EVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 879
LP LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 880 VVCTIHQPSIDIFEAFDAGIPGVSKIRDG 908
VV H + D V + G
Sbjct: 189 VVVATHAKEL-----VDTTRHRVIALERG 212
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 4e-17
Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 26/177 (14%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG-----RKTRGYITGNITISGYPKNQET 758
L +S G +TAL+G +G GK+TL+ +L G + + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP--DEGEVLLDGKDIYDLD 73
Query: 759 FTRIS-----GYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV 810
+ G Q P ++Y+++ Y L + + VEE +
Sbjct: 74 VDVLELRRRVGMVFQ----KPNPFPGSIYDNVAYGLRLHGIK--LKEELDERVEEALRKA 127
Query: 811 ELNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
L ++ L L GLS Q++RL +A L P ++ +DEPTS LD + A +
Sbjct: 128 ALWDEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 5e-17
Identities = 68/239 (28%), Positives = 99/239 (41%), Gaps = 50/239 (20%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQHDIHIG 60
+LGP GSGK+TL+ LAG L SG+V +G D+ P+ + AY+ Q
Sbjct: 33 ILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
+TV E LV L R P + R +E I
Sbjct: 90 GLTVYE-----------------LVLLGRY-------P------HLGLFGRPSKEDEEIV 119
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
+ L++L L+ AD V + +SGG+R+RV L L +DE ++ LD +
Sbjct: 120 EEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQ 174
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLF----DDIILVSDGQIVYQGPLEHVEQ 235
++ L N T ++ L NL D +IL+ DG+IV QG E V
Sbjct: 175 IEVLELLRDLNREKGLTVVMVLHDL-----NLAARYADHLILLKDGKIVAQGTPEEVLT 228
|
Length = 258 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 7e-17
Identities = 62/206 (30%), Positives = 90/206 (43%), Gaps = 34/206 (16%)
Query: 697 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG-RKTRGYITGNITISGYP-- 753
+ +L+GVS PG A++G +GSGK+TL+ LAG G +T+ G P
Sbjct: 344 YPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQ---GEVTLDGVPVS 400
Query: 754 -KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL 812
+Q+ R C Q D H TV E+L + + EE+ +E
Sbjct: 401 SLDQDEVRRRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATD-------EELWAALER 447
Query: 813 NPLRQALVGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
L L LP GL T +R+RL +A L+A+ I+ +DEPT LDA
Sbjct: 448 VGLADWLRALPD--GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAE 505
Query: 862 AAAVVMRTVRNTVDTGRTVVCTIHQP 887
A ++ + +GRTVV H
Sbjct: 506 TADELLEDLLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 8e-17
Identities = 52/206 (25%), Positives = 83/206 (40%), Gaps = 43/206 (20%)
Query: 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ- 756
L +N VS RPG + L+G G+GKTTL +++ G + + G + I+G P ++
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 757 ------ETFTRISGYCEQNDIHSPYVTVYESLL--------------YSAWLRLSSEVNS 796
TF Q P +TV E++ + E
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE 128
Query: 797 KTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 856
+ E++E V L L G LS Q++RL IA L P ++ +DEP +
Sbjct: 129 R-----ARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAA 178
Query: 857 GLDARAAAVVMRTVRNTVDT-GRTVV 881
GL+ + +R D G T++
Sbjct: 179 GLNPEETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 1e-16
Identities = 60/223 (26%), Positives = 88/223 (39%), Gaps = 44/223 (19%)
Query: 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETF 759
VL +G+S G L G GSGKTTL+ ++AG G TI + +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG------TIKLDGGDID-- 67
Query: 760 TRISGYCEQNDIH--------SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 811
E H P +TV E+L + W E+ + +E V
Sbjct: 68 --DPDVAEA--CHYLGHRNAMKPALTVAENLEF--WAAFLG-----GEELDIAAALEAVG 116
Query: 812 LNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 871
L L LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R
Sbjct: 117 L----APLAHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIR 171
Query: 872 NTVDTGRTVVCTIHQPSIDIFEAFDAGIPGVSKIR-DGYNPAT 913
+ G V+ H P G+PG ++ +
Sbjct: 172 AHLAQGGIVIAATHIP---------LGLPGARELDLGPFAAED 205
|
Length = 207 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 2e-16
Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 17/187 (9%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFT- 760
+ GVS R G + L+G G+GKTT + +L + T +G T++G+ +E
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT----SGRATVAGHDVVREPREV 71
Query: 761 -RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 819
R G Q+ +T +E+L A RL ++ RE ++E+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHA--RLYGVPGAERRER-IDELLDFVGLLEAADRL 128
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GR 878
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 VK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 879 TVVCTIH 885
T++ T H
Sbjct: 184 TILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-16
Identities = 62/246 (25%), Positives = 102/246 (41%), Gaps = 47/246 (19%)
Query: 660 DQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTAL 719
+ + LP + F+ +++ DD VL +S PG A+
Sbjct: 456 QEGDKTLIHLPKLQGEIEFENVSFRYG----------PDDPPVL-EDLSLEIPPGEKVAI 504
Query: 720 MGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYV 776
+G +GSGK+TL+ +L G G I + G N + R GY Q+
Sbjct: 505 VGRSGSGKSTLLKLLLGLYKP--QQGRILLDGVDLNDIDLASLRRQVGYVLQDP------ 556
Query: 777 TVYESLLYSAWLR----LSSEVNSKTREMFVEEVMELVELNPLRQALVGLP--------- 823
L+S +R L + + EE++E +L + + LP
Sbjct: 557 -----FLFSGSIRENIALGNPEATD------EEIIEAAQLAGAHEFIENLPMGYDTPVGE 605
Query: 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCT 883
G LS QR+RL +A L++ P I+ +DE TS LD A++++ + + GRTV+
Sbjct: 606 GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVIII 664
Query: 884 IHQPSI 889
H+ S
Sbjct: 665 AHRLST 670
|
Length = 709 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 4e-16
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 26/206 (12%)
Query: 694 RGVH---DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG--YITGN 746
RG+ + VL GV R G + A++G +GSGK+TL+ ++ G R G I G
Sbjct: 4 RGLTKSFGGRTVL-KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGE 62
Query: 747 ITISGYPKNQETFTRISGYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREM 801
R G Q + + TV+E++ + LR + ++ +
Sbjct: 63 DISGLSEAELYRLRRRMGMLFQSGALFDSL-----TVFENVAF--PLREHTRLSEEEIRE 115
Query: 802 FVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
V E +E V L R A P LS +KR+ +A L +P ++ DEPT+GLD
Sbjct: 116 IVLEKLEAVGL---RGAEDLYPA--ELSGGMKKRVALARALALDPELLLYDEPTAGLDPI 170
Query: 862 AAAVVMRTVRNTVDT-GRTVVCTIHQ 886
A+ V+ +R+ G T + H
Sbjct: 171 ASGVIDDLIRSLKKELGLTSIMVTHD 196
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 7e-16
Identities = 52/198 (26%), Positives = 93/198 (46%), Gaps = 28/198 (14%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 760
L VS PG AL+G +G+GK+TL+++L G T G I + ++ + +++
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA--DADSWR 395
Query: 761 RISGYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 817
+ Q+ P++ T+ E++ + + + E +E L+
Sbjct: 396 DQIAWVPQH----PFLFAGTIAENIRLAR--------PDASDAE-IREALERAGLDEFVA 442
Query: 818 AL-VGL-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 871
AL GL G GLS Q +RL +A + + ++ +DEPT+ LDA A V+ +R
Sbjct: 443 ALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALR 502
Query: 872 NTVDTGRTVVCTIHQPSI 889
+ GRTV+ H+ ++
Sbjct: 503 A-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 7e-16
Identities = 54/227 (23%), Positives = 98/227 (43%), Gaps = 39/227 (17%)
Query: 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL 734
+ F +++S + ++ L+ VS R G A++G GSGK+TL+ +L
Sbjct: 2 RIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLL 50
Query: 735 AG--RKTRGYI-TGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS 791
AG + T G + I + I GY Q D+ Y T+ +++ A L+
Sbjct: 51 AGLYKPTSGSVLLDGTDIRQLDP-ADLRRNI-GYVPQ-DVTLFYGTLRDNITLGA--PLA 105
Query: 792 SEVNSKTREMFVEEVMELVELNPLRQALVGLP---------GVNGLSTEQRKRLTIAVEL 842
+ E ++ EL + + P GLS QR+ + +A L
Sbjct: 106 DD----------ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155
Query: 843 VANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 889
+ +P I+ +DEPTS +D + + +R + +T++ H+PS+
Sbjct: 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSL 201
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 76.3 bits (189), Expect = 8e-16
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 52/189 (27%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETF 759
+L VS +PG A++G +GSGK+TL+ +L T G I + + + E+
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDL--DLESL 74
Query: 760 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 819
+ Y Q + L+S T + E
Sbjct: 75 RKNIAYVPQ-----------DPFLFSG-----------T-------IRE----------- 94
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 879
N LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R + G+T
Sbjct: 95 ------NILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAKGKT 147
Query: 880 VVCTIHQPS 888
V+ H+ S
Sbjct: 148 VIVIAHRLS 156
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 9e-16
Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 20/205 (9%)
Query: 685 VDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT 744
+D KR G DKLV+ +G+S + G L+G G+GKTT + +L G
Sbjct: 8 IDFRNVEKRYG---DKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--A 61
Query: 745 GNITISGYP---KNQETFTRISGYCEQNDIHSPYVTVYESLL-YSAWLRLSSEVNSKTRE 800
G+I++ G P + + R+ G Q D P TV E+LL + + LS+ + R
Sbjct: 62 GSISLCGEPVPSRARHARQRV-GVVPQFDNLDPDFTVRENLLVFGRYFGLSA---AAARA 117
Query: 801 MFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860
+ V ++E +L A VG LS ++RLT+A LV +P ++ +DEPT+GLD
Sbjct: 118 L-VPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDP 171
Query: 861 RAAAVVMRTVRNTVDTGRTVVCTIH 885
+A ++ +R+ + G+T++ T H
Sbjct: 172 QARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 707 VSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGN-ITISGYPKNQETFTRIS 763
VS G +T L+G G+GKTTL+ ++A G +T + + P +I
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP--SFVRRKIG 78
Query: 764 GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 823
+ +++ +T E+L Y A L + ++ K + + E+ + ++L VG
Sbjct: 79 VLFGERGLYA-RLTARENLKYFARL---NGLSRKEIKARIAELSKRLQLLEYLDRRVG-- 132
Query: 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCT 883
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+ +
Sbjct: 133 ---EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189
Query: 884 IH 885
H
Sbjct: 190 SH 191
|
Length = 245 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 25/201 (12%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGYPKNQETFTRI 762
L VS + PG AL+G +G+GK+TL+ L G T G++ I G N+ +
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKAL 73
Query: 763 ------SGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 816
G Q ++V E++L R S+ S +F +E E
Sbjct: 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRST-WRS-LFGLFPKE-----EKQRAL 126
Query: 817 QAL--VGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 869
AL VGL + LS Q++R+ IA L+ P +I DEP + LD ++ VM
Sbjct: 127 AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL 186
Query: 870 VRN-TVDTGRTVVCTIHQPSI 889
++ + G TV+ ++HQ +
Sbjct: 187 LKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-15
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQP 887
LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+ H P
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 888 SIDIFEAFD 896
A D
Sbjct: 141 E-LAELAAD 148
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 15/153 (9%)
Query: 713 PGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITI---SGYPKNQETFTRISGYCE 767
+T + G +G+GK+TL+ +AG + G I N T+ S N R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 768 QNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 827
Q P++ V E+L + + + E + V+E+++L+ L+ L
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLLGLDHLLNR-----YPAQ 131
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860
LS +++R+ +A L A P ++ +DEP S LD
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDR 164
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 4e-15
Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 19/201 (9%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKN 755
++ +S + G L+G +G GKTTL+ ++AG + + G I I+ P
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE 75
Query: 756 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 815
+ R G Q+ P++TV E++ + L++ ++ + VEE +ELV L
Sbjct: 76 K----RPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGF 129
Query: 816 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN-TV 874
+ LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++
Sbjct: 130 ADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184
Query: 875 DTGRTVVCTIHQPSIDIFEAF 895
+ G T V H D EA
Sbjct: 185 ELGITFVYVTH----DQEEAL 201
|
Length = 352 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 7e-15
Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 21/205 (10%)
Query: 690 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GN 746
+ R ++++GV PG LT L+G GSGK+TL+ +LAG R G +
Sbjct: 3 RLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAG 62
Query: 747 ITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLY------SAWLRLSSEVNSKTRE 800
+ + G + R EQ+ + +TV + + S W S +
Sbjct: 63 VDLHGLSRRAR--ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDR 120
Query: 801 MFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860
EL L ++ LS +R+R+ +A L P ++ +DEPT+ LD
Sbjct: 121 ALAR--TELSHL--------ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDV 170
Query: 861 RAAAVVMRTVRNTVDTGRTVVCTIH 885
RA + VR TG TVV +H
Sbjct: 171 RAQLETLALVRELAATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 9e-15
Identities = 56/230 (24%), Positives = 91/230 (39%), Gaps = 54/230 (23%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQH-D 56
L++GP GSGK+TL+ L G L + SG+V +G D+ + + R + Q+ D
Sbjct: 29 FVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPD 85
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
TV E +AF G L E ++ V E
Sbjct: 86 DQFFGPTVEEEVAFGLENLG----------LPEEE--------------IEERVEE---- 117
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
L+++ L+ D L SGGQ++RV +L L +DE + GLD
Sbjct: 118 ------ALELVGLEGLRDRSP--FTL---SGGQKQRVAIAGVLAMDPDILLLDEPTAGLD 166
Query: 177 SSTTFHIVNSLGQFNHILNGTALISL---LQPAPEVYNLFDDIILVSDGQ 223
+ ++ L + G +I + L + L D +I++ DG+
Sbjct: 167 PAGRRELLELLKKLKA--EGKTIIIVTHDLD---LLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 9e-15
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 15/172 (8%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT---GNITISGYPKNQET 758
++ VS R G L+G +GSGK+TL +LAG + G I ++ ++G +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 759 FTRISGYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 816
+ Q+ S P +TV + L LR+ + R V E++ELV L P
Sbjct: 367 RRIQMVF--QDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP-- 420
Query: 817 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR 868
+ L P + LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 421 EFLDRYP--HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG--YITGNITISGYPKNQE 757
V+L+ ++ G + A++G +GSGK+TL++++ + G Y+ G T K
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 758 TFTRIS-GYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELN-P 814
F R GY QN TV E+L L L +++ K + +E +E V LN
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENLD----LGLKYKKLSKKEKREKKKEALEKVGLNLK 127
Query: 815 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 874
L+Q + LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 128 LKQK------IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
Query: 875 DTGRTVVCTIHQPSI 889
D G+T++ H P +
Sbjct: 182 DEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT--GNITISGYPKNQE---T 758
L+ VS RPG AL+G G+GK+TL +L TR Y+ G I+++G+ +
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 759 FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 818
R+ +Q + ++V ++L Y A L S ++ R + E++ + L
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN-TVDTG 877
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 878 RTVVCTIH 885
+V+ H
Sbjct: 184 LSVLWATH 191
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 1e-14
Identities = 61/193 (31%), Positives = 99/193 (51%), Gaps = 21/193 (10%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP---KN 755
DK V+ NG+S G L+G G+GK+T+ ++ G + G IT+ G P +
Sbjct: 53 DKAVV-NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARA 109
Query: 756 QETFTRISGYCEQNDIHSPYVTVYESLL-YSAWLRLSSEVNSKTREMFVEEVM-ELVELN 813
+ RI G Q D TV E+LL + + +S TRE +E V+ L+E
Sbjct: 110 RLARARI-GVVPQFDNLDLEFTVRENLLVFGRYFGMS------TRE--IEAVIPSLLEFA 160
Query: 814 PL-RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 872
L +A V+ LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+
Sbjct: 161 RLESKADAR---VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRS 217
Query: 873 TVDTGRTVVCTIH 885
+ G+T++ T H
Sbjct: 218 LLARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 14/198 (7%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 761
L+ +S + G L AL+G +G+GK+TL+ ++AG G I N + N R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 762 ISGYCEQNDIHSPYVTVYESLLYSAWLRLS--SEVNSKTREMFVEEVMELVELNPLRQAL 819
G+ Q+ P++TV +++ + +R SE + R VEE++ LV+L L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR---VEELLRLVQLEGLADRY 134
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGR 878
P LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G
Sbjct: 135 ---P--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 879 TVVCTIHQPSIDIFEAFD 896
T V H + E D
Sbjct: 190 TTVFVTHDQE-EALELAD 206
|
Length = 345 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 15/200 (7%)
Query: 690 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNI 747
E + + L + +S G + G G+GKTTL+ +LAG R G +
Sbjct: 4 EAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YW 61
Query: 748 TISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVM 807
+E++ + Y +T E+L + W R N+ T + E +
Sbjct: 62 QGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEAL 115
Query: 808 ELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVM 867
V L L LP V LS Q++R+ +A ++ + +DEP + LD A++
Sbjct: 116 AQVGLAGLED----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLT 170
Query: 868 RTVRNTVDTGRTVVCTIHQP 887
+ G V+ T HQP
Sbjct: 171 ALMAAHAAQGGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 19/195 (9%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT---GNITISGYPKNQET 758
L ++ PG A++G +G+GK+TL+ + + G I +IT K ++
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 759 FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKT-REMFVEEVMELVELNPLRQ 817
RI G Q+ +TV E++L+ RL + ++ F EE E L+ L +
Sbjct: 78 RRRI-GMIFQHYNLIERLTVLENVLHG---RLGYKPTWRSLLGRFSEEDKERA-LSALER 132
Query: 818 ALVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 872
VGL + LS Q++R+ IA L P +I DEP + LD + + VM ++
Sbjct: 133 --VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190
Query: 873 -TVDTGRTVVCTIHQ 886
+ G TV+ +HQ
Sbjct: 191 INKEDGITVIINLHQ 205
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 19/203 (9%)
Query: 696 VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNIT-ISGY 752
+ L V+ G + A++G +G+GK+TL+ L G T G I N I+
Sbjct: 12 TYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKL 71
Query: 753 PKNQETFTRIS-GYCEQNDIHSPYVTVYESLL------YSAWLRLSSEVNSKTREMFVEE 805
+ R G Q P ++V E++L S W L + + + ++
Sbjct: 72 KGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA 131
Query: 806 VMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 865
L + L +A + LS Q++R+ IA LV P II DEP + LD +A
Sbjct: 132 ---LERVGILDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKK 185
Query: 866 VMRTVR--NTVDTGRTVVCTIHQ 886
VM ++ N D G TV+ +HQ
Sbjct: 186 VMDILKDINQED-GITVIVNLHQ 207
|
Length = 258 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 5e-14
Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKN----QE 757
L V+ G L+G +G GK+TL+ ++AG T G I I G ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL----IDGRDVTDLPPEK 74
Query: 758 TFTRISGYCEQNDIHSPYVTVYESLLYSAWLR-LSSEVNSKTREMFVEEVMELVELNPLR 816
R QN P++TVYE++ + LR + K V+EV +L+ L L
Sbjct: 75 ---RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR----VKEVAKLLGLEHLL 127
Query: 817 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV 870
LS QR+R+ +A LV P + +DEP S LDA+ V+MR+
Sbjct: 128 NRKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSE 175
|
Length = 338 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-14
Identities = 56/208 (26%), Positives = 84/208 (40%), Gaps = 31/208 (14%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-IT-GNITISGYPKN 755
+ K +L GV+ + G + A+MG GSGK+TL + G Y +T G I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDG---- 67
Query: 756 QETFTRISGYCE----------QNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEE 805
E +S E Q + P VT + L + R + ++E
Sbjct: 68 -EDILELSPD-ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKE 125
Query: 806 VMELVELNPL---RQALVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
EL+ L+ R VN G S ++KR I L+ P + +DEP SGLD
Sbjct: 126 KAELLGLDEEFLER-------YVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDID 178
Query: 862 AAAVVMRTVRNTVDTGRTVVCTIHQPSI 889
A +V + + GR V+ H +
Sbjct: 179 ALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 5e-14
Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 31/212 (14%)
Query: 692 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITI 749
K G + L +S + G AL+G +G GK+TL+ ++AG R T G + +
Sbjct: 8 KTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLV 63
Query: 750 SGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL 809
G P R GY Q D P++TV +++ L L ++ RE EL
Sbjct: 64 DGEPVTGPGPDR--GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEARE----RAEEL 115
Query: 810 VELNPLRQALVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 864
+EL VGL G LS R+R+ +A L +P ++ +DEP S LDA
Sbjct: 116 LEL-------VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTRE 168
Query: 865 VVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAF 895
+ + + +TG+TV+ H DI EA
Sbjct: 169 QLQEELLDIWRETGKTVLLVTH----DIDEAV 196
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 7e-14
Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 15/189 (7%)
Query: 692 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT--GNI 747
+ L+ VS + + G L+G +GSGK+TL + G + T G I G
Sbjct: 9 VSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKD 68
Query: 748 TISGYPKNQETFTRISGYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMFVEE 805
+ + ++ + Q+ + S P +T+ E + + + R+ V
Sbjct: 69 LLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH-GKLSKKEARKEAVLL 127
Query: 806 VMELVELNP--LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 863
++ V L L + P + LS QR+R+ IA L NP ++ DEPTS LD
Sbjct: 128 LLVGVGLPEEVLNR----YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQ 181
Query: 864 AVVMRTVRN 872
A ++ ++
Sbjct: 182 AQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 9e-14
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 34/205 (16%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP--- 753
D V+L+ +S +PG + ++G +GSGK+TL ++ R Y+ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLI----QRFYVPENGRVLVDGHDLAL 68
Query: 754 KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVME----- 808
+ R G Q E++L++ +R + M +E V+E
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 809 -----LVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 863
+ EL +VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 864 AVVMRTVRNTVDTGRTVVCTIHQPS 888
+MR + + GRTV+ H+ S
Sbjct: 175 HAIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 21/166 (12%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYP----KNQ 756
LN VS G ++G +GSGK+TL +LAG + + +G+I + G P K
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGKPLAPKKRA 77
Query: 757 ETFTRISGYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP 814
+ F R Q+ S P TV L + + E+++ V L P
Sbjct: 78 KAFYRPVQMVFQDPYSSLNPRRTVGRIL-SEPLRPHGL----SKSQQRIAELLDQVGLPP 132
Query: 815 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860
L P + LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 133 --SFLDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
+T L+G G+GKTTL+ LAG+ + + +G++ NG + + QR+ Y+ Q D+H
Sbjct: 35 LTALMGESGAGKTTLLDVLAGRKTAGV-ITGEILINGRPLDKNF-QRSTGYVEQQDVHSP 92
Query: 61 EMTVRETLAFSARCQGVG----SRYDMLVELSRR 90
+TVRE L FSA +G+ R + VEL+ +
Sbjct: 93 NLTVREALRFSALLRGLSVEQRKRLTIGVELAAK 126
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 29/207 (14%)
Query: 692 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYI---TGN 746
K G V+L+GV G + A++G +GSGK+TL+ ++ G R +G I +
Sbjct: 16 KSFGDR----VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGED 71
Query: 747 ITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEV 806
I + E R+ G Q +TV+E++ + LR + ++ +
Sbjct: 72 IPQLSEEELYEIRKRM-GVLFQQGALFSSLTVFENVAFP--LR-------EHTKLPESLI 121
Query: 807 MELVELNPLRQALVGLPGVNG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860
ELV + LVGL G LS RKR+ +A + +P ++F+DEPTSGLD
Sbjct: 122 RELVLMK---LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDP 178
Query: 861 RAAAVVMRTVRNTVDT-GRTVVCTIHQ 886
+A V+ +R D G TV+ H
Sbjct: 179 ISAGVIDELIRELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-13
Identities = 49/190 (25%), Positives = 72/190 (37%), Gaps = 51/190 (26%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETF 759
+L VS + PG A++G +GSGK+TL ++ G R T G + IS + N+
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNE--L 74
Query: 760 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 819
GY Q+D E+F + E
Sbjct: 75 GDHVGYLPQDD-----------------------------ELFSGSIAE----------- 94
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 879
N LS QR+RL +A L NP I+ +DEP S LD + + + G T
Sbjct: 95 ------NILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGAT 148
Query: 880 VVCTIHQPSI 889
+ H+P
Sbjct: 149 RIVIAHRPET 158
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 53/193 (27%), Positives = 82/193 (42%), Gaps = 19/193 (9%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETF 759
LL+GVS RPG + A++G G+GK+TL+ L+G +G +T++G P N E
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE--LSPDSGEVTLNGVPLNSWPPEEL 73
Query: 760 TRISGYCEQNDIHSPYVTVYESLLYSAW-LRLSSEVNSKTREMFVEEVMELVELNPLRQA 818
R QN + TV E + R E R + + +L+ L
Sbjct: 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDER--IAAQALAATDLSGLAGR 131
Query: 819 LVGLPGVNGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAVVMRTVRN 872
LS +++R+ +A L V + +F+DEPTS LD +R R
Sbjct: 132 DY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186
Query: 873 TVDTGRTVVCTIH 885
G V+ +H
Sbjct: 187 LAREGGAVLAVLH 199
|
Length = 259 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 16/191 (8%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQ 756
+ +L G+S G + G G GKTTL+ +LAG R G + N T + +
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 757 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 816
+ R Y P ++ E+L + W + + +E+ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAAIHG-----GAQRTIEDALAAVGLTGFE 121
Query: 817 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 876
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 877 GRTVVCTIHQP 887
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 2e-13
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 21/206 (10%)
Query: 692 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITI 749
+ + +L ++ + G A++G +G GK+TL+ ++AG + T G + +
Sbjct: 7 EGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG----EVLL 62
Query: 750 SGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL 809
G P GY Q D P++TV +++ L L + ++ RE +E++EL
Sbjct: 63 DGRPVTGPGPDI--GYVFQEDALLPWLTVLDNVALG--LELRGKSKAEARER-AKELLEL 117
Query: 810 VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 869
V L P LS R+R+ IA L P ++ +DEP LDA +
Sbjct: 118 VGLAGFEDKY---PHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDE 172
Query: 870 VRNTV-DTGRTVVCTIHQPSIDIFEA 894
+ +T +TV+ H D+ EA
Sbjct: 173 LLRLWEETRKTVLLVTH----DVDEA 194
|
Length = 248 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 54/195 (27%), Positives = 97/195 (49%), Gaps = 26/195 (13%)
Query: 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP----KNQE 757
V+L+ VS G +T+++G G+GK+TL+ +++ + +G ITI G ++E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS--RLLKKDSGEITIDGLELTSTPSKE 72
Query: 758 TFTRISGYCEQNDIHSPYVTVYESLL------YSAWLRLSSEVNSKTREMFVEEVMELVE 811
++S ++N I+S +TV L+ YS RL+ E + E +E +
Sbjct: 73 LAKKLSILKQENHINS-RLTV-RDLVGFGRFPYSQG-RLTKE-----DRRIINEAIEYLH 124
Query: 812 LNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 871
L L + + LS QR+R IA+ L + + +DEP + LD + + +M+ +R
Sbjct: 125 LEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179
Query: 872 NTVDT-GRTVVCTIH 885
D G+T+V +H
Sbjct: 180 RLADELGKTIVVVLH 194
|
Length = 252 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 38/203 (18%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYPKNQETFTR 761
L ++ + +PG A++G TG+GKTTL+++L R Y G I I G +R
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLL----MRFYDPQKGQILIDGIDIRD--ISR 72
Query: 762 IS-----GYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 813
S G Q ++ T+ E++ + V E + +
Sbjct: 73 KSLRSMIGVVLQ----DTFLFSGTIMENIRLG---------RPNATDEEVIEAAKEAGAH 119
Query: 814 PLRQAL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
L +G LS +R+ L IA ++ +P I+ +DE TS +D ++
Sbjct: 120 DFIMKLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 867 MRTVRNTVDTGRTVVCTIHQPSI 889
+ + GRT + H+ S
Sbjct: 179 QEALEKLMK-GRTSIIIAHRLST 200
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 5e-13
Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 14/187 (7%)
Query: 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK-NQETFT 760
V++N +S G L+G G+GK+T+ +L G + G IT+ G P ++
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 761 RIS-GYCEQNDIHSPYVTVYESLL-YSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 818
R++ G Q D P TV E+LL + + +S+ + E + ++E L
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMST----REIEAVIPSLLEFARLESKADV 131
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGR 878
V L LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+
Sbjct: 132 RVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 186
Query: 879 TVVCTIH 885
T++ T H
Sbjct: 187 TILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 6e-13
Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 53/233 (22%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP--QRTAAYISQHDIH 58
M LLGP G+GKTTLM LA S SG + +G D+ + +R Y+ Q
Sbjct: 27 MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGV 83
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANV 118
TVRE L + A +G+ S+ KA
Sbjct: 84 YPNFTVREFLDYIAWLKGIP---------SKEVKAR------------------------ 110
Query: 119 ITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD-- 176
D +L++++L + + +SGG R+RV + LVG L +DE + GLD
Sbjct: 111 -VDEVLELVNL-----GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
Query: 177 SSTTF-HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
F ++++ LG+ ++ T ++ +V +L + + +++ G++V++G
Sbjct: 165 ERIRFRNLLSELGEDRIVILSTHIVE------DVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 6e-13
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 13/162 (8%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 760
L+ VS G L AL+G +GSGKTTL+ ++AG R G I G + P +
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 761 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTR-EMFVEEVMELVELNPLRQAL 819
R G+ Q+ ++TV++++ + ++ SE + V E+++LV+L+ L
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR- 132
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
P LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 133 --YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 7e-13
Identities = 55/232 (23%), Positives = 90/232 (38%), Gaps = 53/232 (22%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQH----- 55
++GP GSGK+TL L + G LD SG+V +G D+ + + AA+ +H
Sbjct: 32 FVAIVGPSGSGKSTL-LNILGGLDRP--TSGEVRVDGTDISKLSEKELAAFRRRHIGFVF 88
Query: 56 -DIH-IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREG 113
+ + ++T E + GV + RRE+A +++ + + E
Sbjct: 89 QSFNLLPDLTALENVELPLLLAGVPKK-------ERRERAEELLERVGLGDRLNHYPSE- 140
Query: 114 QEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 173
+SGGQ++RV L + DE T
Sbjct: 141 -------------------------------LSGGQQQRVAIARALANDPKIILADE-PT 168
Query: 174 G-LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQI 224
G LDS T ++ L + N T ++ PE+ D II + DG+I
Sbjct: 169 GNLDSETGKEVMELLRELNKEAGTTIVVVTHD--PELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-13
Identities = 66/235 (28%), Positives = 97/235 (41%), Gaps = 56/235 (23%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQH-DIHIGE- 61
LLG G+GKTTL+ +A L SGKVT +G D R +++ + + GE
Sbjct: 33 LLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDT-----VRDPSFVRRKIGVLFGER 84
Query: 62 -----MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
+T RE L + AR L LSR+E A+I A
Sbjct: 85 GLYARLTARENLKYFAR----------LNGLSRKEIKARI-------------------A 115
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
+ K L L D VG S G +++V LV L +DE ++GLD
Sbjct: 116 ELS-----KRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165
Query: 177 SSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231
T + + Q + G A+I EV L D +I++ G++V +G +E
Sbjct: 166 IRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIE 218
|
Length = 245 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-13
Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 11/159 (6%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFT-RI 762
L+ V+ G L AL+G +GSGK+TL+ ++AG + +G I ++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 763 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL 822
G+ Q+ ++TV +++ + +R + K R VEE++ELV+L L
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR---VEELLELVQLEGLGDR---Y 127
Query: 823 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
P N LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 128 P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 9e-13
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 21/160 (13%)
Query: 718 ALMGVTGSGKTTLMDVLAG--RKTRGYITGNIT-ISGYPKNQETFTRISGYCEQNDIHSP 774
++G TGSGK+ L++ +AG + G I N I+ P + Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 775 YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVM---ELVELNPLRQALVGLPGVNGLSTE 831
++TVY+++ Y R + + + + + E++ L+ P LS
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LSGG 133
Query: 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 871
+++R+ IA LV NP I+ +DEP S LD R + ++
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-12
Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 28/191 (14%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 761
L+GVS RPG + AL+G G+GK+TLM +L+G +G I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKP------VA 73
Query: 762 ISGYCEQND-----IH-----SPYVTVYESL-LYSAWLRLSSEVNSKTREMFVEEVMELV 810
S + +H P ++V E++ L R ++ K E++ +
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL 133
Query: 811 ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV 870
L+ LVG LS QR+ + IA L + ++ +DEPT+ L + + +
Sbjct: 134 GLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI 188
Query: 871 RNTVDTGRTVV 881
R G ++
Sbjct: 189 RRLKAQGVAII 199
|
Length = 500 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 1e-12
Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 17/194 (8%)
Query: 707 VSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITI-----SGYPKNQETFTR 761
VS G + L+G G+GKTT ++ G R GNI I S P +
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD--AGNIIIDDEDISLLPLHARARRG 79
Query: 762 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG 821
I GY Q ++VY++L+ A L++ +++++ RE E+ME + LR ++
Sbjct: 80 I-GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG- 135
Query: 822 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVV 881
LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+
Sbjct: 136 ----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVL 191
Query: 882 CTIH--QPSIDIFE 893
T H + ++ + E
Sbjct: 192 ITDHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 1e-12
Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 25/195 (12%)
Query: 696 VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT---GNITIS 750
K +L GVS G + AL+G G+GKTTL+ + G G I +IT
Sbjct: 8 AGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT-- 65
Query: 751 GYPKNQETFTRIS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVM 807
R GY + P +TV E+LL A+ R ++ K R +E V
Sbjct: 66 ----GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKR--KAR---LERVY 116
Query: 808 ELV-ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
EL L R+ L G LS +++ L IA L++ P ++ +DEP+ GL + +
Sbjct: 117 ELFPRLKERRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 171
Query: 867 MRTVRNTVDTGRTVV 881
+R D G T++
Sbjct: 172 FEAIRELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 11/164 (6%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP-KNQE 757
V L+GVS + G L+G +G GKTTL+ ++AG +T +G I + G N
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLP 68
Query: 758 TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 817
R QN P++TV+E++ + L+ + K R V E ++LV+L
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKER---VAEALDLVQLEGYAN 125
Query: 818 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
+ LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 126 RKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 61/201 (30%), Positives = 93/201 (46%), Gaps = 26/201 (12%)
Query: 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDV--LAGRKTRGYIT-GNITI-SGYPKNQE 757
+L+G+ +PG + A++G +GSGKTTL+ L + G I G+ITI + +Q+
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 758 -----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL 812
+ G+ QN P+ TV E+++ + V + +E EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI-----VKGEPKEEATARARELL-- 129
Query: 813 NPLRQALVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVM 867
A VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 868 RTVRNTVDTGRTVVCTIHQPS 888
T+R RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 19/187 (10%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI----TGNITISGYPKNQETF 759
L+ +S + G + L+G G+GKTT + ++ G I +G + G P +
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 760 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 819
RI GY + P + V + L+Y A L+ + ++ R ++E +E +EL+
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR---IDEWLERLELSEYANK- 124
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 879
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+T
Sbjct: 125 ----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180
Query: 880 VVCTIHQ 886
V+ + HQ
Sbjct: 181 VILSTHQ 187
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 3e-12
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 20/180 (11%)
Query: 712 RPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS------GY 765
RPG L+GV G+GKTT +L G T +G+ T++G + T IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 766 CEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 825
C Q D +T E L A LR V ++ E ++ + L+ L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGT--- 2070
Query: 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 885
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2071 --YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 4e-12
Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 714 GVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQND-IH 772
G + AL+GV GSGK+TL L G +G I+I G P Q + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 773 SPYVTVYESLL------YSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826
+ + E ++ + WLR + + R++ V + V++ R +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAK---KRDRQI-VTAALARVDMVEFRHRQIG----- 141
Query: 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 885
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 5e-12
Identities = 54/236 (22%), Positives = 85/236 (36%), Gaps = 56/236 (23%)
Query: 2 TLLLGPPGSGKTTLMLALAG--KLDSSLKASGKVTYNG-------HDMHEFVPQRTAAYI 52
T + G G+GK+TL+ +AG K D G + NG ++ QR +
Sbjct: 26 TGIFGASGAGKSTLLRCIAGLEKPDG-----GTIVLNGTVLFDSRKKINLPPQQRKIGLV 80
Query: 53 SQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVRE 112
Q + VRE LAF + RE + V E
Sbjct: 81 FQQYALFPHLNVRENLAFGLK------------RKRNRE--------------DRISVDE 114
Query: 113 GQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 172
+L +L LD + +SGG+++RV L L +DE
Sbjct: 115 ----------LLDLLGLDHLLNRYPA-----QLSGGEKQRVALARALAAQPELLLLDEPF 159
Query: 173 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
+ LD + ++ L Q LN + + E L D I+++ DG++ Y G
Sbjct: 160 SALDRALRLQLLPELKQIKKNLNIPVIF-VTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 23/168 (13%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-----YITGNITISGYPKNQET 758
LN +S + PG L L+G G+GKTTLMDV+ G KTR G+ ++ P+++
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITG-KTRPQEGEVLFDGDTDLTKLPEHR-- 77
Query: 759 FTRISGYCEQNDIHSPY--VTVYESLLY------SAWLRLSSEVNSKTREMFVEEVMELV 810
R G + + + +TV E+L S + L + + ++ R ++E++ +
Sbjct: 78 IARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR-IDELLATI 135
Query: 811 ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858
L R L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 136 GLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 5e-12
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 25/190 (13%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI---TGNITISGYP--KNQET 758
L+ VS + G + +G G+GK+T M ++ G Y+ +G++ + G +N +
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 759 FTRISGYCEQNDIHSP-YVTVY--ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 815
R GY + H+P Y+ +Y E L + A + K R VEE++ELV L P
Sbjct: 73 VQRNIGYLPE---HNPLYLDMYVREYLQFIAGIYGMKGQLLKQR---VEEMIELVGLRPE 126
Query: 816 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD 875
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD V +R V +
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPN-QLVEIRNVIKNIG 180
Query: 876 TGRTVVCTIH 885
+T++ + H
Sbjct: 181 KDKTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 21/192 (10%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 762
+LN +S + G +TAL+G G GK+TL+ A T +G + + P + + ++
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQL 74
Query: 763 SGYCE---QNDIHSPYVTVYESLLY------SAWLRLSSEVNSKTREMFVEEVMELVELN 813
+ Q+ + +TV E + Y S W RLS+E V + ME +N
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVNQAMEQTRIN 129
Query: 814 PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT 873
L + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 130 HLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 874 VDTGRTVVCTIH 885
G+TVV +H
Sbjct: 185 NTQGKTVVTVLH 196
|
Length = 255 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 7e-12
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 22/194 (11%)
Query: 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK---NQET 758
LL+ +S F G +T L+G GSGK+TL+ +L GR + G I + P + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRH-QPPSEGEILLDAQPLESWSSKA 82
Query: 759 FTRISGYCEQNDIHSPYVTVYESLL------YSAWLRLSSEVNSKTREMFVEEVMELVEL 812
F R Y Q + +TV E + + A R + K VEE + LV L
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK-----VEEAISLVGL 137
Query: 813 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAVVMRTVR 871
PL L V+ LS +R+R IA+ + + + +DEPTS LD A V+ R
Sbjct: 138 KPLAHRL-----VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192
Query: 872 NTVDTGRTVVCTIH 885
+ + G TV+ +H
Sbjct: 193 LSQERGLTVIAVLH 206
|
Length = 265 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 64/237 (27%), Positives = 98/237 (41%), Gaps = 63/237 (26%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQHDIHIG 60
++G GSGK+TL+ LAG + SG V +G D+ + P R Y+ Q D+ +
Sbjct: 35 IIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLF 90
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
T+R+ + A P AD + ++A G +T
Sbjct: 91 YGTLRDNITLGA-------------------------PLADDERILRAAELAG-----VT 120
Query: 121 DYILKV---LDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
D++ K LDL + E RG+SGGQR+ V L+ L +DE ++ +D
Sbjct: 121 DFVNKHPNGLDLQI-------GERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDM 173
Query: 178 STTFHIVNSLGQFNHILNGTALI------SLLQPAPEVYNLFDDIILVSDGQIVYQG 228
++ + L Q L LI SLL L D II++ G+IV G
Sbjct: 174 NSEERLKERLRQL---LGDKTLIIITHRPSLLD-------LVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 44/234 (18%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDM-HEFVPQRTAAYISQHDIHI 59
+ LLGP GSGK+TL+ +AG L+ SG++ NG D R ++ QH
Sbjct: 28 LVALLGPSGSGKSTLLRIIAG-LEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALF 84
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVI 119
+TVR+ +AF +E+ + KA KA V E
Sbjct: 85 KHLTVRDNIAFG-------------LEIRKHPKAKI-----------KARVEE------- 113
Query: 120 TDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 179
+L+++ L +GD +SGGQR+RV L L +DE LD+
Sbjct: 114 ---LLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKV 165
Query: 180 TFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
+ + L + + ++ T + + E + D I+++S+G+I G + V
Sbjct: 166 RKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 22/163 (13%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 762
L VS G L ++G +G GKTTL++++AG T G+I ++G R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 763 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL 822
G QN+ P++ V +++ + L+L + R +++ ALVGL
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFG--LQLRG-IEKAQRREIAHQML----------ALVGL 122
Query: 823 PG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860
G + LS R+R+ IA L P ++ +DEP LDA
Sbjct: 123 EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 1e-11
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 20/155 (12%)
Query: 713 PGV-LTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG---YPKNQETFT----RISG 764
PG +TA+ G +GSGKTTL+ ++AG TR G I ++G + + F R G
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGL-TRPD-EGEIVLNGRTLFDSRKGIFLPPEKRRIG 78
Query: 765 YCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 824
Y Q P+++V +L Y R + E V+EL+ + L L LPG
Sbjct: 79 YVFQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHL---LGRLPG 130
Query: 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 --RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 2e-11
Identities = 62/253 (24%), Positives = 106/253 (41%), Gaps = 54/253 (21%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ-RTAAYISQHDIHIGEM 62
LLGP G GK+TL+ +AG + + SG++ +G D+ + P+ R A + Q+ M
Sbjct: 34 LLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHM 90
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
TV E +AF + +GV P A+ID V+E
Sbjct: 91 TVYENIAFGLKLRGV--------------------PKAEID----KRVKE---------- 116
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 182
+ K+L L+ + +SGGQR+RV LV +DE + LD+
Sbjct: 117 VAKLLGLEHLLNRKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVL 171
Query: 183 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMG- 241
+ + + + + L T + E L D I++++DG+I +Q +
Sbjct: 172 MRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRI---------QQVGTPLEL 221
Query: 242 FKCPKRKGIADFL 254
++ P +A F+
Sbjct: 222 YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 16/187 (8%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 760
+NGVS + + G + L+G G+GKTT ++ G + G I I+ P ++
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 761 RISGYCEQNDIHSPY--VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 818
I GY Q S + +TV E++L A L + ++ K RE +EE++E + LR++
Sbjct: 76 GI-GYLPQE--ASIFRKLTVEENIL--AVLEIR-GLSKKEREEKLEELLEEFHITHLRKS 129
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGR 878
LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 130 KAS-----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGI 184
Query: 879 TVVCTIH 885
V+ T H
Sbjct: 185 GVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 54/261 (20%), Positives = 96/261 (36%), Gaps = 58/261 (22%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
+T L+GP G+GK+TL+ A+ G L S SG++ G + + + Y+ Q
Sbjct: 32 ITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDR 88
Query: 61 E--MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANV 118
+TV++ + G + L++++K
Sbjct: 89 SFPITVKDVVLL-----GRYGKKGWFRRLNKKDKEK------------------------ 119
Query: 119 ITDYILKVLDLDVCADTVVGDEMLRG-----ISGGQRKRVTTGEMLVGPAHALFMDEIST 173
+ + L+ VG E LR +SGGQ++RV L L +DE T
Sbjct: 120 ----VDEALER-------VGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 174 GLDSSTTFHIVNSLGQFNHILNGTALISL---LQPAPEVYNLFDDIILVSDGQIVYQGPL 230
G+D + I + L + G ++ + L FD +I ++ I P
Sbjct: 169 GVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMA---YFDRVICLNRHLIASGPPE 223
Query: 231 EHVEQFFISMGFKCPKRKGIA 251
E + + + F +A
Sbjct: 224 EVLTEENLEKAFGGSLAHALA 244
|
Length = 254 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 61/239 (25%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQHDI 57
L+GP GSGK+TL+ + D SG++ +GHD+ ++ R +SQ D+
Sbjct: 30 TVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASLRRQIGLVSQ-DV 85
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+ TV E +A+ P A + V + AN
Sbjct: 86 FLFNDTVAENIAYGR-------------------------PGAT----REEVEEAARAAN 116
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGI--SGGQRKRVTTGEMLVGPAHALFMDEISTGL 175
++I++ L DTV+G+ RG+ SGGQR+R+ L+ L +DE ++ L
Sbjct: 117 A-HEFIME---LPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKDPPILILDEATSAL 169
Query: 176 DSSTTFHIVNSLGQFNHIL-NGTALI-----SLLQPAPEVYNLFDDIILVSDGQIVYQG 228
D+ + + +L ++ N T + S ++ A D I+++ DG+IV +G
Sbjct: 170 DTESERLVQAAL---ERLMKNRTTFVIAHRLSTIENA-------DRIVVLEDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 57/207 (27%), Positives = 87/207 (42%), Gaps = 36/207 (17%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYPKN 755
D +L +S G AL+G +GSGK+TL++++ R Y +G I I G+ +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLI----PRFYDVDSGRILIDGH--D 65
Query: 756 QETFT-----RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV 810
+T R G Q D+ TV E++ Y EEV E
Sbjct: 66 VRDYTLASLRRQIGLVSQ-DVFLFNDTVAENIAYG------------RPGATREEVEEAA 112
Query: 811 ELNPLRQALVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
+ ++ LP G G LS QR+R+ IA L+ +P I+ +DE TS LD
Sbjct: 113 RAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTE 172
Query: 862 AAAVVMRTVRNTVDTGRTVVCTIHQPS 888
+ +V + + RT H+ S
Sbjct: 173 SERLVQAALERLMK-NRTTFVIAHRLS 198
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-11
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 29/168 (17%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 760
L +S + + G L+G +G GKTTL+ ++AG R+T G I G I+ P + +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY- 78
Query: 761 RISGYCEQNDIHSPYVTVYESLLYSAWLR--LSSEVNSKTREMFVEEVMELVELNPLRQA 818
G Q+ P +TV +++ Y R +EV + E+
Sbjct: 79 ---GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELL---------------D 120
Query: 819 LVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
LVGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 121 LVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 3e-11
Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 22/252 (8%)
Query: 640 RDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDD 699
R ++ + E E + ++ L S+ F+ +++S +
Sbjct: 293 SLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFS------------YPG 340
Query: 700 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ 756
K +L +S + PG A++G +GSGK+TL+ +L T G I I I +
Sbjct: 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI--SL 398
Query: 757 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 816
++ + G Q D T+ E++ E+ + E + L
Sbjct: 399 DSLRKRIGIVSQ-DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIA--NLPDGY 455
Query: 817 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 876
+VG GVN LS QR+RL IA L+ NP I+ +DE TS LD A++ ++ +
Sbjct: 456 DTIVGERGVN-LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK- 513
Query: 877 GRTVVCTIHQPS 888
GRT + H+ S
Sbjct: 514 GRTTLIIAHRLS 525
|
Length = 567 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-11
Identities = 68/279 (24%), Positives = 106/279 (37%), Gaps = 76/279 (27%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
+ LG G+GK+T + L G L L SGKV NG D P R ++ IG
Sbjct: 52 IVGFLGANGAGKSTTLKMLTGLL---LPTSGKVRVNGKD-----PFRRR---EEYLRSIG 100
Query: 61 -EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVI 119
M + L + + + + V K+I + D F + +
Sbjct: 101 LVMGQKLQLWWD-----LPALDSLEV--------LKLIYEIPDDEFAERL---------- 137
Query: 120 TDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 179
D++ ++LDL+ + + R +S GQR R L+ P LF+DE + GLD +
Sbjct: 138 -DFLTEILDLE----GFLKWPV-RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNA 191
Query: 180 TFHIVNSLGQFN-----------HILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
+I L ++N HI + A L D ++L+ GQ+V+ G
Sbjct: 192 QANIREFLKEYNEERQATVLLTTHIFDDIA------------TLCDRVLLIDQGQLVFDG 239
Query: 229 PLEH-VEQFFISMGFKCPKRKGIADFLQEVTSRKDQEQY 266
L EQF +F E+ K Q
Sbjct: 240 TLAQLQEQFG-----------PYKEFSVELKQAKSLSQL 267
|
Length = 325 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 4e-11
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 142 LRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSL------GQFNHILN 195
LRG+S QRKR+T G L LF+DE ++GLDS ++IV L GQ
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQ------ 159
Query: 196 GTALISLLQPAPEVYNLFDDIILV-SDGQIVYQG 228
L ++ QP+ ++ FD ++L+ G+ VY G
Sbjct: 160 -AILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-11
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 728 TTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS----GYCEQNDIHSPYVTVYESLL 783
+TL+ ++ G +G I + G + ++ G Q+ P +TV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 784 YSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELV 843
+ K + EE +E V L V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFL----DREPVGTLSGGQKQRVAIARALL 106
Query: 844 ANPSIIFMDEPTS 856
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 5e-11
Identities = 54/230 (23%), Positives = 98/230 (42%), Gaps = 46/230 (20%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIH 58
T L+G G+GK+TL+ L G L + G++ NG D+ + P ++ +++SQ+ +
Sbjct: 350 TALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNP-Y 405
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANV 118
+ T+RE + A D +I +
Sbjct: 406 LFAGTIRENILL----------------------ARPDASDEEIIAALDQA--------- 434
Query: 119 ITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS 178
+L+ + DTV+G+ G+SGGQ +R+ L+ PA L +DE + LD+
Sbjct: 435 ---GLLEFVPKPDGLDTVIGEGG-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE 490
Query: 179 TTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
T I+ +L + T L+ + D I+++ +G++V QG
Sbjct: 491 TEQIILQALQE--LAKQKTVLVITHRLEDAA--DADRIVVLDNGRLVEQG 536
|
Length = 559 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-11
Identities = 54/186 (29%), Positives = 81/186 (43%), Gaps = 12/186 (6%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 760
L VS G L G +G+GK+TL+ ++ G R TRG I +S + F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 761 RIS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 819
R G Q+ P TVYE++ V K V E+++L L+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALPL------RVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 879
LP + LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 880 VVCTIH 885
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 5e-11
Identities = 55/199 (27%), Positives = 83/199 (41%), Gaps = 38/199 (19%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYPKNQ---ET 758
L G+S PG AL+G +G GK+T++ +L R Y +G I + G
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLL----ERFYDPTSGEILLDGVDIRDLNLRW 74
Query: 759 FTRISGYCEQNDIHSP---YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 815
G Q P T+ E++ Y T E VEE + ++
Sbjct: 75 LRSQIGLVSQE----PVLFDGTIAENIRYGK--------PDATDEE-VEEAAKKANIHDF 121
Query: 816 RQALVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
++ LP G G LS Q++R+ IA L+ NP I+ +DE TS LDA + +V
Sbjct: 122 ---IMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178
Query: 867 MRTVRNTVDTGRTVVCTIH 885
+ + GRT + H
Sbjct: 179 QEAL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 6e-11
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 38/175 (21%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ---- 756
LN +S PG L ++G G+GKTT+MDV+ G R G + G ++G P++Q
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 757 ---ETFTRISGYCEQNDIHSPYVTVYESLLYSA----------WLRLSSEVNSKTREMFV 803
F + + + +TV+E+L + + RLS+E + +
Sbjct: 78 GIGRKFQKPTVF--------ENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-----I 124
Query: 804 EEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858
EEV+E + L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 125 EEVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 6e-11
Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 24/200 (12%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISG---YPKNQ 756
++GVS + G + ++G +GSGK+ L + G K I G I G ++
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 757 ETFTRISG----YCEQNDIHS--PYVTV----YESLLYSAWLRLSSEVNSKTREMFVEEV 806
+ +I G Q+ + S P +T+ E L E + E+
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIEL----- 134
Query: 807 MELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
+ELV + + L P + LS R+R+ IA+ L NP ++ DEPT+ LD A +
Sbjct: 135 LELVGIPDPERRLKSYP--HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQI 192
Query: 867 MRTVRNTV-DTGRTVVCTIH 885
+ ++ + G ++ H
Sbjct: 193 LDLLKELQREKGTALILITH 212
|
Length = 316 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-11
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 20/152 (13%)
Query: 713 PGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGN---ITISGYPKNQETFTRISGYCE 767
G+ TAL G +GSGKT+L++++AG R G I N + + R GY
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82
Query: 768 QNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 827
Q+ P+ TV +L Y W S + ++++ L+ + L L PG
Sbjct: 83 QDARLFPHYTVRGNLRYGMW-------KSMRAQF--DQLVALLGIEHL---LDRYPGT-- 128
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 7e-11
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 16/193 (8%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITI-----SGYPKNQET 758
L ++ PG + L G +GSGKTTL+ ++ G R G++ + G + +
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGG--LRSVQEGSLKVLGQELYGASEKELV 78
Query: 759 FTRIS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 817
R + GY Q ++T +++ + L L ++ + ++E V L
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLG---D 133
Query: 818 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DT 876
L P + LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ +
Sbjct: 134 HLDYYP--HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 877 GRTVVCTIHQPSI 889
G T++ H I
Sbjct: 192 GCTILIVTHDNRI 204
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 7e-11
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 33/191 (17%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 761
+N +S + L+G G+GK+TL+ ++ G R T +G I G+P +TR
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHP-----WTR 66
Query: 762 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTR-------EMFVEEVMELVELNP 814
D+H + LY L++ N K + ++EV+ +V+L
Sbjct: 67 -------KDLHKIGSLIESPPLYE---NLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN 116
Query: 815 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 874
+ S ++RL IA+ L+ +P ++ +DEPT+GLD + +R+
Sbjct: 117 TGKKKAK-----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFP 171
Query: 875 DTGRTVVCTIH 885
+ G TV+ + H
Sbjct: 172 EQGITVILSSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 7e-11
Identities = 53/202 (26%), Positives = 80/202 (39%), Gaps = 22/202 (10%)
Query: 690 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNI 747
E D L +G+S G + G GSGKTTL+ +LAG G +
Sbjct: 2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRV 57
Query: 748 TISGYPKNQETFTRISG--YCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEE 805
++G P + + + G Y ++V E+L + W S+ VEE
Sbjct: 58 LLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRF--WHADHSDEQ-------VEE 108
Query: 806 VMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 865
+ V LN V LS Q++R+ +A L++ + +DEPT+ LD A
Sbjct: 109 ALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVAR 163
Query: 866 VMRTVRNTVDTGRTVVCTIHQP 887
+ G VV T HQ
Sbjct: 164 FAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 9e-11
Identities = 59/235 (25%), Positives = 94/235 (40%), Gaps = 58/235 (24%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAA-------YIS 53
++GP GSGK+TL L L G LD SG+V NG D+ + + A ++
Sbjct: 33 FVAIVGPSGSGKSTL-LNLLGGLDK--PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVF 89
Query: 54 QHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREG 113
Q+ + ++TV E + G + RR++AA+
Sbjct: 90 QNFNLLPDLTVLENVELPLLIAGKSAG--------RRKRAAE------------------ 123
Query: 114 QEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 173
+L+VL L+ E+ SGGQ++RV L+ + DE T
Sbjct: 124 --------ELLEVLGLEDRLLKKKPSEL----SGGQQQRVAIARALINNPKIILADEP-T 170
Query: 174 G-LDSSTTFHIVNSLGQFNHILNGTALISLLQPA---PEVYNLFDDIILVSDGQI 224
G LDS T ++ L + N T ++ PE+ D +I + DG+I
Sbjct: 171 GNLDSKTAKEVLELLRELNKERGKTIIM-----VTHDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 9e-11
Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 33/200 (16%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
L ++ G L ++G +G GKTTL++++AG Y G+IT+ G P R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 764 GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 823
G QN+ P+ V +++ + L+L+ V R +++ VGL
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQLAG-VEKMQRLEIAHQML----------KKVGLE 119
Query: 824 GVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAVVMRTVRNTV-- 874
G LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ +
Sbjct: 120 GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQ 176
Query: 875 DTGRTVVCTIHQPSIDIFEA 894
+TG+ V+ H DI EA
Sbjct: 177 ETGKQVLLITH----DIEEA 192
|
Length = 255 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 9e-11
Identities = 59/245 (24%), Positives = 95/245 (38%), Gaps = 40/245 (16%)
Query: 650 SQSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSG 709
Q E T +Q G L S T+ + L +
Sbjct: 318 DQKPEVTFPDEQTATTGQALELRNVSFTYPG------------------QQTKALKNFNL 359
Query: 710 AFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQN 769
G A++G +GSGK+TL+ +LAG G+IT++G I+ EQ
Sbjct: 360 TLAQGEKVAILGRSGSGKSTLLQLLAG--AWDPQQGSITLNGVE--------IASLDEQA 409
Query: 770 DIHSPYVTVYESLLYSAWLR---LSSEVNSKTREMFVEEVMELVEL-NPLRQALVGLP-- 823
+ V L+S LR + ++ E++ ++ V L L A GL
Sbjct: 410 LRETISVLTQRVHLFSGTLRDNLRLANPDASDEELW--AALQQVGLEKLLESAPDGLNTW 467
Query: 824 ---GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTV 880
G LS +R+RL +A L+ + + +DEPT GLD V+ + + G+T+
Sbjct: 468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTL 526
Query: 881 VCTIH 885
+ H
Sbjct: 527 LMVTH 531
|
Length = 573 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-10
Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 760
++ V+ G L+G +GSGKTT + ++ T G I IS E
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD-PVELRR 75
Query: 761 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 820
+I GY Q P++TV E++ L + K R +E+++LV L+P +
Sbjct: 76 KI-GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR---ADELLDLVGLDP-SEYAD 130
Query: 821 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-VVMRTVRNTVDTG 877
P + LS Q++R+ +A L A+P I+ MDEP LD R ++ ++ G
Sbjct: 131 RYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE--LG 186
Query: 878 RTVVCTIHQPSIDIFEAF 895
+T+V H DI EA
Sbjct: 187 KTIVFVTH----DIDEAL 200
|
Length = 309 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 12/190 (6%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYI-TGNITISGYPKNQETFT 760
L+ VS R G L G +G+GKTTL+ +L G +RG + ++ Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 761 RIS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 819
R G Q+ P TVYE++ +R E + R V + V L A
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEHKADAF 134
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 879
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G T
Sbjct: 135 ---PEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTT 189
Query: 880 VVCTIHQPSI 889
V+ H S+
Sbjct: 190 VIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 1e-10
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 692 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG 751
K G + +L +L GV + G AL+G +GSGK+TL+ +LAG +G +++ G
Sbjct: 14 KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVG 71
Query: 752 YP---KNQETFTRIS----GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVE 804
P ++E ++ G+ Q+ + P + E++ A LR S S+
Sbjct: 72 QPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSR------N 125
Query: 805 EVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
L+E L + L LP LS +++R+ +A P ++F DEPT LD
Sbjct: 126 GAKALLEQLGLGKRLDHLPA--QLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 1e-10
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 11/187 (5%)
Query: 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP-KNQETFT 760
+L+ +S G L AL+G +G GKTTL+ +AG +TG I I+ +
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 761 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 820
R QN P++ V +++ + + + + R V + ++LV L A
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLG---DAAA 132
Query: 821 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT--GR 878
LP LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 133 HLP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 879 TVVCTIH 885
T++C H
Sbjct: 191 TILCVTH 197
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 54/237 (22%), Positives = 95/237 (40%), Gaps = 53/237 (22%)
Query: 5 LGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHE--FVPQRTAAYISQHDIHIGEM 62
LGP G+GK+T M + G L SG V G D+ + QR Y+ +H+ +M
Sbjct: 34 LGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
VRE L F A G+ + +++ ++I
Sbjct: 91 YVREYLQFIAGIYGMKGQ-------LLKQRVEEMI------------------------- 118
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 182
++ + + +S G R+RV + L+ L +DE +TGLD +
Sbjct: 119 -------ELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVE 171
Query: 183 IVN---SLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQF 236
I N ++G+ I+ T ++ EV + D +I+++ G+IV L+ +
Sbjct: 172 IRNVIKNIGKDKTIILSTHIMQ------EVEAICDRVIIINKGKIVADKKLDELSAA 222
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-10
Identities = 61/240 (25%), Positives = 104/240 (43%), Gaps = 38/240 (15%)
Query: 662 PKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMG 721
++ M LP L+ + +T P K L G+S + + G A++G
Sbjct: 303 SRDPAMPLPEPEGHLSVENVTIVP--PGGKKPT---------LRGISFSLQAGEALAIIG 351
Query: 722 VTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVTV 778
+GSGK+TL ++ G +G++ + G Q ETF + GY Q D+ TV
Sbjct: 352 PSGSGKSTLARLIVG--IWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ-DVELFPGTV 408
Query: 779 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP---------GVNGLS 829
E++ R + E+++E +L + + ++ LP G LS
Sbjct: 409 AENI-----ARFGENADP-------EKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLS 456
Query: 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 889
QR+R+ +A L +P ++ +DEP S LD + ++ G TVV H+PS+
Sbjct: 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSL 516
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 28/201 (13%)
Query: 697 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYP- 753
+ D L G++ G + AL+G G+GK+TL G + T +G + I G P
Sbjct: 11 YPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPI 66
Query: 754 ----KNQETFTRISGYCEQN---DIHSPYVTVYESLLYSAW-LRLS-SEVNSKTREMFVE 804
K+ + G QN + +P TV E + + L LS EV + +E
Sbjct: 67 KYDKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKEEVEKRVKEALKA 124
Query: 805 EVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 864
ME E P LS Q+KR+ IA L P II +DEPTSGLD A+
Sbjct: 125 VGMEGFENKPPHH----------LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
Query: 865 VVMRTVRNTVDTGRTVVCTIH 885
+M+ + + G T++ + H
Sbjct: 175 QIMKLLYDLNKEGITIIISTH 195
|
Length = 275 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 2e-10
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 40/203 (19%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT---GNITISGYPKNQ--- 756
LL+ VS RPG + A++G G+GK+TL+ L+ G ++ G + ++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 757 -ETFTRISGYCEQNDIHSPYVTVYE--SLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 813
E R + + + + P+ TV E ++ + +E ++ V + V+L
Sbjct: 72 AELARRRAVLPQHSSLSFPF-TVEEVVAMGRAPHGLSRAEDDA-----LVAAALAQVDLA 125
Query: 814 PLR----QALVGLPGVNGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAA 863
L L G G EQ +R+ +A L P + +DEPTS LD
Sbjct: 126 HLAGRDYPQLSG--G------EQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQ 176
Query: 864 AVVMRTVRN-TVDTGRTVVCTIH 885
V+R R + G V+ +H
Sbjct: 177 HHVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 73/194 (37%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISGYPKNQ 756
L ++ +TAL+G +G GK+TL+ D++ G + + G + + G
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDG----- 73
Query: 757 ETFTRISGYCEQNDIHSPYV---------------------TVYESLLYSAWLRLSSEVN 795
+I+ P V ++Y+++ Y LRL +
Sbjct: 74 ------------KNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYG--LRLHGIKD 119
Query: 796 SKTREMFVEEVMELVELNPLRQALVGL----------PGVNGLSTEQRKRLTIAVELVAN 845
E+ E+VE + L++A L GLS Q++RL IA L
Sbjct: 120 K--------ELDEIVE-SSLKKA--ALWDEVKDRLHKSA-LGLSGGQQQRLCIARALAVK 167
Query: 846 PSIIFMDEPTSGLD 859
P ++ MDEPTS LD
Sbjct: 168 PEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-10
Identities = 60/240 (25%), Positives = 98/240 (40%), Gaps = 59/240 (24%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIG 60
++G GSGK+TL+ L G + G V +G D+ + P +R Y+ Q D +
Sbjct: 496 IIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQ-DPRLF 551
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
T+R+ +A A P AD + ++A G +T
Sbjct: 552 YGTLRDNIALGA-------------------------PYADDEEILRAAELAG-----VT 581
Query: 121 DYILKVLDLDVCA-DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 179
+++ D +G E R +SGGQR+ V L+ L +DE ++ +D+ +
Sbjct: 582 EFV----RRHPDGLDMQIG-ERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636
Query: 180 TFHIVNSLGQFNHILNGTALI------SLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
+ L L G L+ SLL L D II++ +G+IV GP + V
Sbjct: 637 EERFKDRL---KRWLAGKTLVLVTHRTSLLD-------LVDRIIVMDNGRIVADGPKDQV 686
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 34/205 (16%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTL------MDVLAGRKTRGYITGNITISG---YPK 754
LN VS F P +TAL+G +GSGK+TL M+ L T ITG+I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 755 NQETF---TRISGYCEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV 810
+T I +Q + P+ +++YE+++Y LRL + + + VE+ ++
Sbjct: 78 RTDTVDLRKEIGMVFQQPN---PFPMSIYENVVYG--LRLKGIKDKQVLDEAVEKSLKGA 132
Query: 811 EL-----NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 865
+ + L + +GL G Q++R+ IA L +P II +DEPTS LD +A
Sbjct: 133 SIWDEVKDRLHDSALGLSG------GQQQRVCIARVLATSPKIILLDEPTSALDPISAGK 186
Query: 866 VMRTVRNTVD--TGRTVVCTIHQPS 888
+ T+ D T V ++ Q S
Sbjct: 187 IEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-10
Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 32/206 (15%)
Query: 697 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT--GNITISGYPK 754
D +L+ ++ +PG ++G +GSGK+TL +L R Y G + + G
Sbjct: 466 APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLL----QRLYTPQHGQVLVDGVDL 521
Query: 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 811
R G V + E++L+S +R + E V+ +
Sbjct: 522 AIADPAWLRRQMG-----------VVLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAK 568
Query: 812 LNPLRQALVGLP-GVN--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 862
L + LP G N LS QR+R+ IA LV NP I+ DE TS LD +
Sbjct: 569 LAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628
Query: 863 AAVVMRTVRNTVDTGRTVVCTIHQPS 888
A++MR +R + GRTV+ H+ S
Sbjct: 629 EALIMRNMR-EICRGRTVIIIAHRLS 653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 20/192 (10%)
Query: 700 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETF 759
+L GVS + G + A++G +GSGK+TL+ +L G +G + +G ++ +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 760 TRIS-------GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL 812
+ G+ Q P T E++ + S +K R E++E V L
Sbjct: 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAY---EMLEKVGL 131
Query: 813 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV---MRT 869
+ P LS +R+R+ IA LV PS++ DEPT LD A ++ M
Sbjct: 132 ---EHRINHRPS--ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186
Query: 870 VRNTVDTGRTVV 881
+ ++T VV
Sbjct: 187 LNRELNTSFLVV 198
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 44/208 (21%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYP-- 753
D +L VS G A++G +GSGK+T++ +L R Y +G+I I G
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL----FRFYDVSSGSILIDGQDIR 66
Query: 754 -KNQETFTRISGYCEQ-----NDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEV 806
++ R G Q ND T+ ++ Y R ++ EEV
Sbjct: 67 EVTLDSLRRAIGVVPQDTVLFND------TIGYNIRYG---RPDATD----------EEV 107
Query: 807 MELVELNPLRQALVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSG 857
+E + + ++ P G G LS +++R+ IA ++ NP I+ +DE TS
Sbjct: 108 IEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSA 167
Query: 858 LDARAAAVVMRTVRNTVDTGRTVVCTIH 885
LD + +R V GRT + H
Sbjct: 168 LDTHTEREIQAALR-DVSKGRTTIVIAH 194
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 18/192 (9%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE 757
DK + + +S PG + L+G G+GKTT ++ G G IT +G P +QE
Sbjct: 13 GDKKAV-DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQE 69
Query: 758 TFTRISGYC-EQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 816
RI GY E+ ++ P +TV + L Y A L+ E+ +++ +E R
Sbjct: 70 IKNRI-GYLPEERGLY-PKMTVEDQLKYLAELK-----GMPKAEI-QKKLQAWLE----R 117
Query: 817 QALVGLPG--VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 874
+VG + LS ++++ ++ P ++ +DEP SGLD ++ +
Sbjct: 118 LEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELK 177
Query: 875 DTGRTVVCTIHQ 886
+ G T++ + H+
Sbjct: 178 EEGATIIFSSHR 189
|
Length = 300 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 24/191 (12%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGY-P-KNQETF 759
L G+S G + +G G+GKTT + +L+G + T +G + ++G P K ++ F
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT----SGEVRVAGLVPWKRRKKF 92
Query: 760 -TRISGYCEQNDIHSPYVTVYESL-LYSAWLRLSSEVNSKTREMFVEEVMELVEL--NPL 815
RI Q + V +S L +A L K + E +++L EL P+
Sbjct: 93 LRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSE-LLDLEELLDTPV 151
Query: 816 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV- 874
RQ LS QR R IA L+ P I+F+DEPT GLD A + ++
Sbjct: 152 RQ----------LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR 201
Query: 875 DTGRTVVCTIH 885
+ G TV+ T H
Sbjct: 202 ERGTTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 54/236 (22%), Positives = 91/236 (38%), Gaps = 48/236 (20%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSS---LKASGKVTYNGHDMHEFVPQRTAAYISQH-D 56
LL+GP GSGK+TL+ L G L + + G T + + E + + Q+ D
Sbjct: 32 RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELR--QKVGLVFQNPD 89
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
+ TV + +AF G+ R E ++ V E
Sbjct: 90 DQLFGPTVEDEVAFGLENLGL----------PREE--------------IEERVAE---- 121
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV-GPAHALFMDEISTGL 175
L+++ L+ D +SGGQ++RV +L GP L +DE + GL
Sbjct: 122 ------ALELVGLEELL-----DRPPFNLSGGQKQRVAIAGVLAMGPE-ILLLDEPTAGL 169
Query: 176 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231
D ++ L + G +I + V D ++++ DG+I+ G
Sbjct: 170 DPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPA 224
|
Length = 235 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 59/236 (25%), Positives = 89/236 (37%), Gaps = 64/236 (27%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHE----------FVPQRTAAYIS 53
LLGP G+GKTT + LAG L+ +G T +G D+ + FV T Y
Sbjct: 36 LLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLY-- 90
Query: 54 QHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREG 113
+T RE L + A G+ +G
Sbjct: 91 ------DRLTARENLEYFAGLYGL----------------------------------KG 110
Query: 114 QEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV-GPAHALFMDEIS 172
E + + L ++ D VG G S G R++V LV P L DE +
Sbjct: 111 DELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLL-DEPT 164
Query: 173 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
TGLD T + + Q + G ++ EV L D ++++ G++VY+G
Sbjct: 165 TGLDVMATRALREFIRQLRAL--GKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 62/249 (24%), Positives = 97/249 (38%), Gaps = 65/249 (26%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
+ +LGP G+GK+TL+ AL+G+L SG+VT NG ++ + P+ A H
Sbjct: 29 VLAILGPNGAGKSTLLKALSGEL---SPDSGEVTLNGVPLNSWPPEELA-------RHRA 78
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
+ +LAF Q V V++ R + RE +E I
Sbjct: 79 VLPQNSSLAFPFTVQEV-------VQMGRIPHRSG---------------REPEEDERIA 116
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML------VGPAHALFMDEISTG 174
L DL A R +SGG+++RV +L V LF+DE ++
Sbjct: 117 AQALAATDLSGLAGRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171
Query: 175 LDSSTTFHIVNSLGQFN----------HILNGTALISLLQPAPEVYNLFDDIILVSDGQI 224
LD + H + Q H LN A + D I+L+ G++
Sbjct: 172 LDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYA------------DRIVLLHQGRV 219
Query: 225 VYQGPLEHV 233
+ G + V
Sbjct: 220 IASGSPQDV 228
|
Length = 259 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 58/252 (23%), Positives = 105/252 (41%), Gaps = 52/252 (20%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ-RTAAYISQHDIHIGEM 62
+LGP GSGK+ L+ +AG + SGK+ NG D+ P+ R +Y+ Q+ M
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHM 86
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
TV + +A+ + ++ ++E K++ +I +
Sbjct: 87 TVYKNIAYGLK----------KRKVDKKEIERKVL---EIAEMLG--------------- 118
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 182
I +L+ +SGG+++RV LV L +DE + LD T
Sbjct: 119 IDHLLNRKP-----------ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEK 167
Query: 183 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGF 242
+ L + G ++ + E + L D + ++ +G+++ G E V F
Sbjct: 168 LREEL-KKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV--------F 218
Query: 243 KCPKRKGIADFL 254
K PK + +A+FL
Sbjct: 219 KKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-10
Identities = 49/183 (26%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTR 761
LL VS PG L+G G+GK+TL+ +LAG +G +T PK R
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTR---PKG----LR 67
Query: 762 ISGYCEQNDIHSPYVTVYESLL-----YSAWLRLSSEVNSKTREMFVEEVMELVEL---- 812
+ GY Q P TV + ++ L E + + E + EL L
Sbjct: 68 V-GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 813 ------NPLRQALVGLPGVNGLSTE-------QRKRLTIAVELVANPSIIFMDEPTSGLD 859
+AL+GL G R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGL-GFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
Query: 860 ARA 862
+
Sbjct: 186 LES 188
|
Length = 530 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 19/194 (9%)
Query: 705 NGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISG 764
VS PG + ++G +GSGK+TL+ LAGR G T + ++S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTATYIMRSGAELELYQLSE 77
Query: 765 YCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFV------------EEVMELVEL 812
+ + + + V+++ +R+S+ N R M + ++ +E VE+
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEI 137
Query: 813 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 872
+P R + LP S ++RL IA LV P ++FMDEPT GLD A ++ +R
Sbjct: 138 DPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 193
Query: 873 TV-DTGRTVVCTIH 885
V D G V+ H
Sbjct: 194 LVRDLGLAVIIVTH 207
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 49/233 (21%), Positives = 85/233 (36%), Gaps = 52/233 (22%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHI 59
LLGP G GKTTL+ +AG SG++ +G D+ P +R + Q
Sbjct: 28 FLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALF 84
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVI 119
+TV E +AF + +GV R + +++ ++ + E
Sbjct: 85 PHLTVAENIAFGLKLRGVPKA-------EIRARVRELLELVGLEGLLNRYPHE------- 130
Query: 120 TDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 179
+SGGQ++RV L L +DE + LD+
Sbjct: 131 -------------------------LSGGQQQRVALARALAREPSLLLLDEPLSALDAKL 165
Query: 180 TFHIVNSLGQFNHILNGTALISLL----QPAPEVYNLFDDIILVSDGQIVYQG 228
+ + + + ++ Q E L D I ++++G+IV G
Sbjct: 166 REEL---REELKELQRELGITTIYVTHDQ--EEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 4e-10
Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 35/177 (19%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ------ 756
+L+ VS + G + A++G +GSGK+TL+ +L G T +G++ +G P ++
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 757 -ETFTRISGYCEQNDIHSPYVTVYES----LLYSAWLRLSSEVNSKTREMFVEEVMELVE 811
E + G+ Q P T E+ LL +E+NS+ EM
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKP--AEINSRALEML--------- 130
Query: 812 LNPLRQALVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 863
A VGL + LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 131 ------AAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 4e-10
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 18/198 (9%)
Query: 700 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP---KNQ 756
+L +L GV + G A++G +GSGK+TL+ VLAG +G + + G P ++
Sbjct: 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQPLHKLDE 79
Query: 757 ETFTRIS----GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL 812
+ + G+ Q+ P +T E++ LR + + L +
Sbjct: 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLELR-----GESSADSRAGAKALLEAV 134
Query: 813 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 872
L + L P LS +++R+ +A P ++F DEPT LD + +
Sbjct: 135 G-LGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFA 191
Query: 873 TV-DTGRTVVCTIHQPSI 889
+ G T+V H P +
Sbjct: 192 LNRERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 4e-10
Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 34/205 (16%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGN------ITISGYPKNQE 757
L+ V G + AL+G +GSGK+TL+ R G ITG+ I + G +E
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLL-----RHLSGLITGDKSAGSHIELLGRTVQRE 74
Query: 758 TFTRISGYCEQNDIHSPYV----------TVYESLLYSAWLRLSSEVNSKTREMFVEEVM 807
R++ ++ ++ Y+ +V E++L A L S +T +
Sbjct: 75 G--RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA---LGSTPFWRTCFSWFTREQ 129
Query: 808 ELVELNPLRQALVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 862
+ L L + VG+ V+ LS Q++R+ IA L+ +I DEP + LD +
Sbjct: 130 KQRALQALTR--VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPES 187
Query: 863 AAVVMRTVRNTVDT-GRTVVCTIHQ 886
A +VM T+R+ G TVV T+HQ
Sbjct: 188 ARIVMDTLRDINQNDGITVVVTLHQ 212
|
Length = 262 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 4e-10
Identities = 61/218 (27%), Positives = 94/218 (43%), Gaps = 34/218 (15%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
L+ +S R G + ALMG G+GK+TL+ +L+G G+I I G F +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMR---FASTT 74
Query: 764 GYCEQND--IH-----SPYVTVYESLLYSAWL-RLSSEVNSKTREMFVEEVMEL-----V 810
I+ P +TV E+L +L +L + R + E E V
Sbjct: 75 AALAAGVAIIYQELHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHLGV 130
Query: 811 ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV 870
+++P + LS QR+ + IA L N +I DEPTS L AR + R +
Sbjct: 131 DIDPDTP-------LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI 183
Query: 871 RNTVDTGRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDG 908
R GR ++ H+ +IF DA ++ +DG
Sbjct: 184 RELRAEGRVILYVSHRME-EIFALCDA----ITVFKDG 216
|
Length = 501 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 17/166 (10%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK-----NQE 757
+L +S PG A++G G+GKTTL+ +L G +G++T+ G E
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGRRFGKGETIFE 103
Query: 758 TFTRISGYC--EQNDIHSPYVTVYESLL--YSAWLRLSSEVNSKTREMFVEEVMELVELN 813
RI G E ++ TV + +L + A + + E + + ++EL+
Sbjct: 104 LRKRI-GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK 162
Query: 814 PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
L G LS +++R+ IA LV +P ++ +DEP GLD
Sbjct: 163 HLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLD 203
|
Length = 257 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 5e-10
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 43/204 (21%)
Query: 707 VSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYC 766
VS PG + ++G +GSGKTTL+ ++GR + T T
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGR--------------LTPDAGTVTYRMRDG 70
Query: 767 EQNDIHSPYVTVYESLLYSAW------------LRLSSEVNSKTREMFV----------- 803
+ D+++ LL + W +++S+ N R M +
Sbjct: 71 QPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAE 130
Query: 804 -EEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 862
++ +E VE++ R + LP S ++RL IA LV P ++FMDEPT GLD
Sbjct: 131 AQDWLEEVEIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV 186
Query: 863 AAVVMRTVRNTV-DTGRTVVCTIH 885
A ++ +R V + G VV H
Sbjct: 187 QARLLDLLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 6e-10
Identities = 52/180 (28%), Positives = 75/180 (41%), Gaps = 39/180 (21%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYIS--QHDIHI 59
+LGP GSGK+TL+ LAG LD G+VT +G + +S D H+
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHL 420
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVI 119
+ TVRE L + PDA + A+ R G
Sbjct: 421 FDTTVRENLRLAR-------------------------PDATDEELWAALERVGLA---- 451
Query: 120 TDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 179
D++ L DTV+G E +SGG+R+R+ L+ A L +DE + LD+ T
Sbjct: 452 -DWL---RALPDGLDTVLG-EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAET 506
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 6e-10
Identities = 57/227 (25%), Positives = 87/227 (38%), Gaps = 45/227 (19%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP--QRTAAYISQHDIHIGE 61
LLGP G+GKTT + L L + SG+ T GHD+ +R + Q E
Sbjct: 31 LLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDE 87
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
+T E L AR GV RRE+ ++
Sbjct: 88 LTGWENLYIHARLYGVPGA-------ERRERIDEL------------------------- 115
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
L + L D +++ SGG R+R+ LV LF+DE + GLD T
Sbjct: 116 --LDFVGL-----LEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRA 168
Query: 182 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
H+ + + T L++ E L D + ++ G+I+ +G
Sbjct: 169 HVWEYIEKLKEEFGMTILLT-THYMEEAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 7e-10
Identities = 57/232 (24%), Positives = 85/232 (36%), Gaps = 82/232 (35%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
+ +LGP G+GK+TL+ LAG L S SG++ +G D+
Sbjct: 27 IVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLAS------------------ 65
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
LS +E A KI A V Q
Sbjct: 66 --------------------------LSPKELARKI-----------AYVP--Q------ 80
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
L++L L AD + +SGG+R+RV L L +DE ++ LD +
Sbjct: 81 --ALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNL----FDDIILVSDGQIVYQG 228
++ L + T ++ L NL D +IL+ DG+IV QG
Sbjct: 134 IELLELLRRLARERGKTVVMVLHDL-----NLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 7e-10
Identities = 57/211 (27%), Positives = 86/211 (40%), Gaps = 44/211 (20%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT---GNITISGYPKNQETF 759
+N ++ G L+G +GSGKTT M + I G I I G ++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 760 TRIS---GYCEQNDIHSPYVTVYE------SLLYSAWLRLSSEVNSKTREMFVEEVMELV 810
+ GY Q P++TV E LL W + + +E++ LV
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADELLALV 121
Query: 811 ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT- 869
L+P + P LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 122 GLDP-AEFADRYPH--ELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRDQ 173
Query: 870 -----VRNTVDTGRTVVCTIHQPSIDIFEAF 895
R + G+T+V H DI EAF
Sbjct: 174 LQEEFKRLQQELGKTIVFVTH----DIDEAF 200
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 7e-10
Identities = 52/155 (33%), Positives = 74/155 (47%), Gaps = 18/155 (11%)
Query: 719 LMGVTGSGKTTLMDVLAG--RKTRG--YITGNITISGYPKNQETFTRISGYCEQNDIHSP 774
L+G +G GKTT + ++AG T G YI G PK+ R QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYALYP 85
Query: 775 YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834
++TVY+++ + LR + R V EV EL+++ L L P LS QR+
Sbjct: 86 HMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHL---LDRKP--KQLSGGQRQ 137
Query: 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 869
R+ + +V P + MDEP S LDA+ V MR
Sbjct: 138 RVALGRAIVREPKVFLMDEPLSNLDAK-LRVQMRA 171
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-10
Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 38/170 (22%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE 757
D +LL +S G A++G G+GK+TL+ +LAG G ++G + + G
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL--GPLSGTVKV-GETVK-- 386
Query: 758 TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 817
GY +Q+ KT + E + +R
Sbjct: 387 -----IGYFDQH--------------RDELD------PDKTVLEELSEGFPDGDEQEVRA 421
Query: 818 AL--VGLPG------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
L G G V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 8e-10
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-ETFTR- 761
L GV+ + G + A+MG GSGK+TL +AG + +G I G + E R
Sbjct: 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERA 75
Query: 762 -----ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 816
++ Q P V+ E +LR S +N++ R EE ++L++ L
Sbjct: 76 RAGLFLA---FQYPEEIPGVSNLE------FLR--SALNAR-RSARGEEPLDLLDFLKLL 123
Query: 817 Q---ALVGLP------GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
+ AL+G+ VN G S ++KR I + P + +DE SGLD A +V
Sbjct: 124 KAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIV 183
Query: 867 MRTVRNTVDTGRTVVCTIHQPSI 889
+ + R+ + H +
Sbjct: 184 AEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 8e-10
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYIT-GNITISGYPKN 755
L ++ +TAL+G +G GK+TL+ D++ G + G + I +
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 756 QETFTRISGYCEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-N 813
R G Q +P+ +++Y+++ Y RL + K + VEE ++ L +
Sbjct: 77 VVELRRRVGMVFQKP--NPFPMSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAALWD 132
Query: 814 PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 872
++ L GLS Q++RL IA L P ++ +DEPTS LD A + ++
Sbjct: 133 EVKDRLHDSA--LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE 189
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 9e-10
Identities = 56/256 (21%), Positives = 96/256 (37%), Gaps = 67/256 (26%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYIS---QHDIH 58
LLGP G+GK+TL L + G+++ GHD+ P+ A + Q
Sbjct: 30 VALLGPNGAGKSTLFSLLTRLYVA---QEGQISVAGHDLRR-APRAALARLGVVFQQPTL 85
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANV 118
+++VR+ L + A G LSR E A+I
Sbjct: 86 DLDLSVRQNLRYHAALHG----------LSRAEARARI---------------------- 113
Query: 119 ITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS 178
+L L L AD V R ++GG R+RV L+ L +DE + GLD +
Sbjct: 114 --AELLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPA 166
Query: 179 TTFHIVNSLGQFNH-----ILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG----- 228
+ I + +L T L+ ++ D ++++ G+++ G
Sbjct: 167 SRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVLHRGRVLADGAAAEL 219
Query: 229 ----PLEHVEQFFISM 240
+E F+++
Sbjct: 220 RGATGGADLEAAFLAL 235
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 9e-10
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 24/192 (12%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT---GNITISGYPKNQET 758
L GVS G + AL+G G+GKTTL+ + G R G I +IT
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT------GLPP 72
Query: 759 FTRIS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV-ELNP 814
R Y + P +TV E+LL A+ R + + +E +EEV EL L
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYAR----RDKEAQERDLEEVYELFPRLKE 128
Query: 815 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 874
R G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 129 RRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 875 DTGRTVVCTIHQ 886
G + + Q
Sbjct: 184 KEGGMTILLVEQ 195
|
Length = 237 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 1e-09
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMH---EFVPQRTAAYISQHDIHIG 60
LLGP G+GKTTL+ + G L SG++ G D+ E V +R Y+ +
Sbjct: 31 LLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRI-GYLPEEPSLYE 86
Query: 61 EMTVRETLAFS 71
+TVRE L S
Sbjct: 87 NLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 52/235 (22%), Positives = 82/235 (34%), Gaps = 62/235 (26%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHE----------FVPQRTAAYIS 53
LGP G+GKTT + L L + SG G+D+ VPQ +
Sbjct: 24 FLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDE- 79
Query: 54 QHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREG 113
++T RE L R G L + E +
Sbjct: 80 -------DLTGRENLEMMGRLYG----------LPKDEAEERA----------------- 105
Query: 114 QEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 173
+ +L++ +L D + SGG R+R+ L+ LF+DE +T
Sbjct: 106 -------EELLELFEL-----GEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153
Query: 174 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
GLD T I + + G ++ E L D I ++ G+I+ +G
Sbjct: 154 GLDPRTRRAIWDYIRALKE--EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 24/206 (11%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP-----KNQET 758
L G++ + G +TA++G G+GK+TL L G +G I G P K
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNG--ILKPSSGRILFDGKPIDYSRKGLMK 79
Query: 759 FTRISGYCEQNDIHSPY-VTVYESLLYSAW-LRL-SSEVNSKTREMFVEEVMELVELNPL 815
G Q+ + + +VY+ + + A L+L EV + V+ ++ + L
Sbjct: 80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRTGIEHL 134
Query: 816 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV- 874
+ P + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 135 KDK----P-THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189
Query: 875 DTGRTVVCTIHQPSIDIFEAF-DAGI 899
+ G T++ H IDI + D
Sbjct: 190 ELGLTIIIATH--DIDIVPLYCDNVF 213
|
Length = 283 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-09
Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 45/234 (19%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQHDI 57
++G GSGK+TL+ L G G++ +G D+++ R Y+ Q D
Sbjct: 501 KVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQ-DP 556
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+ ++RE +A + +AA++ A F++
Sbjct: 557 FLFSGSIRENIALG----------NPEATDEEIIEAAQL---AGAHEFIEN--------- 594
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
L + DT VG E +SGGQR+R+ L+ L +DE ++ LD
Sbjct: 595 -----------LPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDP 642
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231
T I+ +L Q IL G +I ++ D II++ G+IV QG E
Sbjct: 643 ETEAIILQNLLQ---ILQGRTVI-IIAHRLSTIRSADRIIVLDQGKIVEQGSHE 692
|
Length = 709 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 43/193 (22%), Positives = 74/193 (38%), Gaps = 41/193 (21%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDI 57
L+GP G+GK+TL+ L G +D G + NG + + + A++ QH
Sbjct: 350 RVALVGPSGAGKSTLLNLLLGFVDP---TEGSIAVNGVPLADADADSWRDQIAWVPQHP- 405
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+ T+ E + + + + E R A +D F+ A
Sbjct: 406 FLFAGTIAENIRLARP----DASDAEIREALER---------AGLDEFVAA--------- 443
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
L DT +G+ G+SGGQ +R+ + A L +DE + LD+
Sbjct: 444 -----------LPQGLDTPIGEGG-AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDA 491
Query: 178 STTFHIVNSLGQF 190
T ++ +L
Sbjct: 492 ETEAEVLEALRAL 504
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 50/233 (21%), Positives = 88/233 (37%), Gaps = 45/233 (19%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDM--HEFVPQRTAA--YISQHD 56
+ LLGP G+GK+TL+ +AG L++ +G++ NG + + R ++ QH
Sbjct: 30 LVALLGPSGAGKSTLLRIIAG-LETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHY 86
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
MTV + +AF + + + E R + ++
Sbjct: 87 ALFPHMTVADNIAFGLKVRK-----ERPSEAEIRARVEEL-------------------- 121
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
L + + D +SGGQR+RV L L +DE LD
Sbjct: 122 ------------LRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 169
Query: 177 SSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 229
+ + L + + L T + E L D +++++ G+I GP
Sbjct: 170 AKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-09
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 26/177 (14%)
Query: 694 RGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITIS 750
+ L+ VS G + ++G +G+GK+TL+ ++ R T G + ++
Sbjct: 12 GQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLT 71
Query: 751 GYPKNQ-ETFTRISGYCEQ--NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVM 807
+ + + G Q N + S TV+E++ + L L+ V + + V
Sbjct: 72 ALSEAELRQLRQKIGMIFQHFNLLSSR--TVFENVAFP--LELAG-VPKAEIK---QRVA 123
Query: 808 ELVELNPLRQALVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
EL+EL VGL LS Q++R+ IA L NP I+ DE TS LD
Sbjct: 124 ELLEL-------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
|
Length = 339 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 44/186 (23%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 762
+L+GV+ +TALMG +GSGK+TL+ V N I YP+ R+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 763 SG--YCEQNDIHS--------------------PYVTVYESLLYSAWLRLSSEVNSKTRE 800
SG Y + DI P ++++E++ L+L+ V SK +E
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSK-KE 118
Query: 801 MF--VEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858
+ V +E +L + + P LS Q++RL IA L P ++ DEPT+ L
Sbjct: 119 LQERVRWALEKAQLWDEVKDRLDAPA-GKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 859 DARAAA 864
D A
Sbjct: 178 DPENTA 183
|
Length = 250 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 35/204 (17%)
Query: 706 GVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISGY----PK 754
V+ + G + AL+G +G GKTT + D+ G + +TG I + G P+
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGAR----VTGRILLDGQDIYGPR 77
Query: 755 -NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 813
+ R G Q P ++V+++++ A L+L+ + +ME+ E +
Sbjct: 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRD-------HLMEVAERS 128
Query: 814 PLRQAL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
AL + P GLS Q++RL IA L P I+ MDEPTS LD + A +
Sbjct: 129 LRGAALWDEVKDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI 187
Query: 867 --MRTVRNTVDTGRTVVCTIHQPS 888
+ T V T V +HQ +
Sbjct: 188 EDLMTDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 2e-09
Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 23/217 (10%)
Query: 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 735
+ F+++ Y+ R + D L + + G TAL+G TGSGK+TL+ L
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEV--------KKGSYTALIGHTGSGKSTLLQHLN 53
Query: 736 G--RKTRGYI-TGNITISGYPKNQET--FTRISGYCEQNDIHSPYVTVYESLLYS--AWL 788
G + T G + G+I +S K +E + G Q P ++E + A+
Sbjct: 54 GLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQ----FPESQLFEETVLKDVAFG 109
Query: 789 RLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSI 848
+ + + E E +E+V L + P LS Q +R+ IA L P +
Sbjct: 110 PQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSP--FELSGGQMRRVAIAGILAMEPEV 165
Query: 849 IFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 885
+ +DEPT+GLD +A +M+ + +G+TVV H
Sbjct: 166 LVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTH 202
|
Length = 288 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 17/201 (8%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFT 760
+L G++ F +T L+G G GK+TL L+G R +G + Y K
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 761 R--ISGYCEQNDIHSPYVTVYESLLYSAWLR-LSSEVNSKTREMFVEEVMELVELNPLRQ 817
R ++ + + Y + + +S LR L TR V+E + LV+ R
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFS--LRNLGVPEAEITRR--VDEALTLVDAQHFRH 131
Query: 818 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTG 877
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 132 Q-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 878 RTVVCTIHQPSID-IFEAFDA 897
V+ + H ID I+E DA
Sbjct: 187 NHVIISSH--DIDLIYEISDA 205
|
Length = 271 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 62/201 (30%), Positives = 86/201 (42%), Gaps = 23/201 (11%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 761
L VS + G A++G GSGK+TL +L G G IT+ G ++ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG----TITVGGMVLSEETVWD 78
Query: 762 IS---GYCEQN-DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 817
+ G QN D TV + + + E RE VE V + + +
Sbjct: 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGL------ENIGVPREEMVERVDQALRQVGMED 132
Query: 818 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTG 877
L P + LS Q++R+ IA L P II +DE TS LD R V+ TVR +
Sbjct: 133 FLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190
Query: 878 R-TVVCTIHQPSIDIFEAFDA 897
TV+ H D+ EA A
Sbjct: 191 GITVLSITH----DLDEAAQA 207
|
Length = 279 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 18/188 (9%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
L G+S + G TAL+G G+GK+TL+ L G G + + G N E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 764 ---GYCEQN-DIHSPYVTVYESLLYSAW-LRLS-SEVNSKTREMFVEEVMELVELNPLRQ 817
G Q+ D TV++ + + + L EV + VEE ++ V + R
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR-----VEEALKAVRMWDFRD 133
Query: 818 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTG 877
LS Q+KR+ IA L +P +I +DEP + LD R +M + + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 878 RTVVCTIH 885
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-09
Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 30/183 (16%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP---K 754
D ++L+ VS PG A++G +GSGK+TL+ +L G +T +G++ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 755 NQETFTRISGYCEQN-DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 813
+ + R G QN + S +++E++ A L L +E E +
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSG--SIFENIAGGAPLTL-------------DEAWEAARMA 565
Query: 814 PLRQALVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 864
L + + +P G LS QR+RL IA LV P I+ DE TS LD R A
Sbjct: 566 GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
Query: 865 VVM 867
+V
Sbjct: 626 IVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 57/242 (23%), Positives = 93/242 (38%), Gaps = 47/242 (19%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAY-IS---QHDI 57
L+GP G+GKTTL + G S SG V + G D+ P R A I+ Q
Sbjct: 33 VGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQI-T 88
Query: 58 HI-GEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
+ +TV E +A A + S + +E +EA
Sbjct: 89 RLFPGLTVLENVAVGAHARLGLSG----------------------LLGRPRARKEEREA 126
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
+L+ + L AD G+ +S GQ++R+ L L +DE + GL+
Sbjct: 127 RERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLN 181
Query: 177 SSTTFHIVNSLGQFNHILNGTALI-----SLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231
T + + + T L+ L V L D I++++ G+++ +G E
Sbjct: 182 PEETEELAELIRELRDRGGVTILLIEHDMKL------VMGLADRIVVLNYGEVIAEGTPE 235
Query: 232 HV 233
V
Sbjct: 236 EV 237
|
Length = 250 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 18/159 (11%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR-KTRGYITGNITISGYP-KNQETFTR 761
L GVS G +T ++G G GKTTL+ L G + G+I + G R
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGEDITKLPPHER 72
Query: 762 IS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 818
Y Q P +TV E+LL R + + E+ EL P+ +
Sbjct: 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAAL-------PRRSRKIPD--EIYELFPVLKE 123
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 857
++G G + LS Q+++L IA LV P ++ +DEPT G
Sbjct: 124 MLGRRGGD-LSGGQQQQLAIARALVTRPKLLLLDEPTEG 161
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 29/180 (16%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR--KTRGYIT-GNITISGYPKNQ--ET 758
LNG+S G ++G G+GK+TL++ +AG T G I + ++ +
Sbjct: 22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81
Query: 759 FTRI-----SGYCEQNDIHSPYVTVYESLLYSAWLR-----LSSEVNSKTREMFVEEVME 808
R+ +G P +T+ E+L A R LSS +N + R F E +
Sbjct: 82 LARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALNERRRSSFRERLAR 133
Query: 809 LVE-LNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVM 867
L L +GL LS QR+ L++ + + P I+ +DE T+ LD + A VM
Sbjct: 134 LGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 3e-09
Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 58/243 (23%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQHDI 57
L+G GSGK+TL+ + + SG++ +GHD+ ++ R A +SQ D+
Sbjct: 360 TVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQ-DV 415
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+ T+ +A+ Q A+I A
Sbjct: 416 VLFNDTIANNIAYGRTEQ---------------------ADRAEI--------ERALAAA 446
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
D++ K L + DT +G+ + +SGGQR+R+ L+ A L +DE ++ LD+
Sbjct: 447 YAQDFVDK---LPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDN 502
Query: 178 STTFHIVNSLGQFNHILNG-TALI-----SLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231
+ + +L ++ G T L+ S ++ A D I+++ DG+IV +G
Sbjct: 503 ESERLVQAAL---ERLMQGRTTLVIAHRLSTIEKA-------DRIVVMDDGRIVERGT-- 550
Query: 232 HVE 234
H E
Sbjct: 551 HNE 553
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 4e-09
Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 47/247 (19%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHD--------MHEFVPQRTAAYI 52
M ++GP G+GK+TL+ +L G +D + SG++ +NG + + +R I
Sbjct: 32 MVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKL--RRDIGMI 86
Query: 53 SQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVEL-SRREKAAKIIPDADIDVFMKAVVR 111
Q + ++V E + G S + L L S+ +KA + A+ R
Sbjct: 87 FQQFNLVPRLSVLENVLLGRL--GYTSTWRSLFGLFSKEDKAQAL----------DALER 134
Query: 112 EGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEI 171
G I D + A T +SGGQ++RV LV + DE
Sbjct: 135 VG-----ILDKAYQR------AST---------LSGGQQQRVAIARALVQQPKIILADEP 174
Query: 172 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231
LD + +++ L N T +++L Q D II + G+IV+ GP
Sbjct: 175 VASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDLAKKYADRIIGLKAGRIVFDGPAS 233
Query: 232 HVEQFFI 238
+ +
Sbjct: 234 ELTDEAL 240
|
Length = 258 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 43/201 (21%)
Query: 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQET 758
+V + VS + + G + AL+G G+GK+TLM +L G + G I + G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS----GEIRVDGKE----- 67
Query: 759 FTRISGYCEQND--------IHS-----PYVTVYESL---LYSAWLRLSSEVNSKTREMF 802
RI D +H P +TV E++ L + L + R
Sbjct: 68 -VRIKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDR--RQARAR- 120
Query: 803 VEEVMEL--VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860
++E+ E + ++P A V LS +++R+ I L ++ +DEPT+ L
Sbjct: 121 IKELSERYGLPVDP--DAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173
Query: 861 RAAAVVMRTVRNTVDTGRTVV 881
+ A + +R G+T++
Sbjct: 174 QEADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 5e-09
Identities = 42/176 (23%), Positives = 63/176 (35%), Gaps = 47/176 (26%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQH-DIHIG 60
L G G+GKTTL LAG + S SG + NG + +++ Y+ Q D +
Sbjct: 29 IALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLF 85
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
+VRE L + D N
Sbjct: 86 TDSVREELLLGL-------------------------KELD-------------AGNEQA 107
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
+ +LK LDL + +SGGQ++R+ L+ L DE ++GLD
Sbjct: 108 ETVLKDLDLYALK-----ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 6e-09
Identities = 43/178 (24%), Positives = 65/178 (36%), Gaps = 46/178 (25%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGE 61
+L GP GSGKTTL+ +AG L A+G + +G D+ + Y+ +
Sbjct: 31 LVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPA 87
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
+TV E L F A G + DI ++AV
Sbjct: 88 LTVAENLEFWAAFLGGE--------------------ELDIAAALEAV------------ 115
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 179
L A G +S GQ++RV +LV +DE + LD++
Sbjct: 116 ------GLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 6e-09
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 31/201 (15%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYPKNQ 756
D LVL VS PG +TAL+G +GSGK+T++ +L Y G + + G P
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALL----ENFYQPQGGQVLLDGKP--- 77
Query: 757 ETFTRISGYCEQNDIHSPYVTV-YESLLYSAWLRLSSEVNSKTREMFVEEVMELV----- 810
IS Y E +HS V E +L++ L+ + ++ E V E
Sbjct: 78 -----ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF--ECVKEAAQKAHA 129
Query: 811 -----ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 865
EL VG G + LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 866 VMRTVRNTVDTGRTVVCTIHQ 886
V + + + RTV+ H+
Sbjct: 189 VQQALYDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 6e-09
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 27/168 (16%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-ITGNITISG-----YPKNQ 756
LL V+ G + LMG +G GK+TL+ + G + TG + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 757 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 816
R G Q+ + P+++V ++LL++ L + + R +E R
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALE-------R 121
Query: 817 QALVGL----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860
L G P LS QR R+ + L+A P + +DEP S LD
Sbjct: 122 SGLDGAFHQDPAT--LSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-09
Identities = 65/247 (26%), Positives = 101/247 (40%), Gaps = 36/247 (14%)
Query: 654 ETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRP 713
+ M LP +L+ + +T P K+ +L G+S A +
Sbjct: 313 NELLAELPAAAERMPLPAPQGALSVERLTA---APPGQKK--------PILKGISFALQA 361
Query: 714 GVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQ---ETFTRISGYCEQ 768
G ++G +GSGK+TL +L G T G ++ + G Q E R GY Q
Sbjct: 362 GEALGIIGPSGSGKSTLARLLVGIWPPTSG----SVRLDGADLRQWDREQLGRHIGYLPQ 417
Query: 769 NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVE-----EVMELVELNPL-RQALVGL 822
D+ T+ E++ R E + E +E V EL+ P +G
Sbjct: 418 -DVELFDGTIAENIA-----RFGEEADP---EKVIEAARLAGVHELILRLPQGYDTRIG- 467
Query: 823 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVC 882
G LS QR+R+ +A L +P ++ +DEP S LD+ A + + G TVV
Sbjct: 468 EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVV 527
Query: 883 TIHQPSI 889
H+PS
Sbjct: 528 IAHRPSA 534
|
Length = 580 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-09
Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 40/215 (18%)
Query: 677 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG 736
FD++++S D R+GV D VS +PG A++G TG+GK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGVED--------VSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 737 RKTRGY--ITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLY----SAWLRL 790
R + +G I I G T I + + V ++ L+ +R+
Sbjct: 382 --QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRV 431
Query: 791 SSEVNSKTREMFVE-----EVMELVELNPLR-QALVGLPGVNGLSTEQRKRLTIAVELVA 844
T E + + +E P +VG G LS +R+RL IA L+
Sbjct: 432 GRP--DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLK 488
Query: 845 NPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 879
+P I+ +DE TS LD A V + + + GRT
Sbjct: 489 DPPILILDEATSALDVETEAKVKAAL-DELMKGRT 522
|
Length = 588 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 7e-09
Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 49/239 (20%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ--RTA----AYISQ 54
L+GP G+GK+TL+ L G ++ + SG V +G D+++ + R I Q
Sbjct: 29 FVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQ 85
Query: 55 HDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQ 114
I ++V E + L S + P + + A+ R G
Sbjct: 86 QFNLIERLSVLENVLSGR-----------LGRRSTWRSLFGLFPKEEKQRALAALERVG- 133
Query: 115 EANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 174
+ D + AD +SGGQ++RV L+ + DE
Sbjct: 134 ----LLDKAYQR------ADQ---------LSGGQQQRVAIARALMQQPKLILADEPVAS 174
Query: 175 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNL----FDDIILVSDGQIVYQGP 229
LD +++ +++ L + N T ++SL Q +L D I+ + DG+IV+ GP
Sbjct: 175 LDPASSRQVMDLLKRINREEGITVIVSLHQV-----DLAREYADRIVGLKDGRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 7e-09
Identities = 59/249 (23%), Positives = 99/249 (39%), Gaps = 62/249 (24%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAA---YIS-QHDIHI 59
++GP GSGK+TL +AG S SG + + G D+ E P A +++ Q+ I
Sbjct: 31 IMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89
Query: 60 GEMTVRETL--AFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
++ E L A +AR R + + + D +KA
Sbjct: 90 PGVSNLEFLRSALNAR---------------RSARGEEPLDLLDFLKLLKAK-------- 126
Query: 118 VITDYILKVLDLDVCADTVVGDEMLR-----GISGGQRKRVTTGEMLV-GPAHALFMDEI 171
L +L +D +E L G SGG++KR +M + P A+ +DEI
Sbjct: 127 ------LALLGMD--------EEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAI-LDEI 171
Query: 172 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDII-----LVSDGQIVY 226
+GLD + + + +I+ Q L + I ++ DG+IV
Sbjct: 172 DSGLDIDALKIVAEGINRLREPDRSFLIITHYQ------RLLNYIKPDYVHVLLDGRIVK 225
Query: 227 QGPLEHVEQ 235
G +E ++
Sbjct: 226 SGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 53/233 (22%), Positives = 92/233 (39%), Gaps = 53/233 (22%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHE------FVPQRTAAYISQH 55
++GP G+GK+TL+ A+ G L SG + G + + +VPQR +
Sbjct: 28 LAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGYVPQRRSI---DR 81
Query: 56 DIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQE 115
D I +VR+ + G+ + LS+ +KA +D ++ V G
Sbjct: 82 DFPI---SVRDVVLM-----GLYGHKGLFRRLSKADKAK-------VDEALERV---G-- 121
Query: 116 ANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 175
+++ D + +SGGQ++RV LV L +DE G+
Sbjct: 122 ---LSELA---------------DRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGV 163
Query: 176 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
D T I L + G ++ + V FD ++L+ + +V G
Sbjct: 164 DPKTQEDIYELLRELR--REGMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 8e-09
Identities = 63/238 (26%), Positives = 100/238 (42%), Gaps = 48/238 (20%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDM-HEFVPQRTAAYISQHDIHI 59
+ LLGP GSGKTTL+ +AG L+ SG + + G D V +R ++ QH
Sbjct: 30 LVALLGPSGSGKTTLLRLIAG-LERP--DSGTILFGGEDATDVPVQERNVGFVFQHYALF 86
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVI 119
MTV + +AF R + ++ P+A+I +A V E
Sbjct: 87 RHMTVFDNVAFGLRVK----------------PRSERPPEAEI----RAKVHE------- 119
Query: 120 TDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 179
+LK++ LD AD +SGGQR+RV L L +DE LD+
Sbjct: 120 ---LLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171
Query: 180 TFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQI--------VYQGP 229
+ L + + L+ T + + E + D +++++ G+I VY P
Sbjct: 172 RKELRRWLRRLHDELHVTTVF-VTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 9e-09
Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 25/194 (12%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 762
+L+GV + R G L L+G G+GKTTL+ + G T G + ++G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 763 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVN-----------SKTREMFVEEVMELVE 811
S + P T SL + +R E+ ++T VE ME
Sbjct: 76 S----RRVASVPQDT---SLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTG 128
Query: 812 LNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 871
+ P V LS +R+R+ +A L ++ +DEPT+ LD + VR
Sbjct: 129 VA----QFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR 183
Query: 872 NTVDTGRTVVCTIH 885
VD G+T V IH
Sbjct: 184 RLVDDGKTAVAAIH 197
|
Length = 402 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-08
Identities = 65/244 (26%), Positives = 90/244 (36%), Gaps = 56/244 (22%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDM----HEFVPQR-TAAYISQH--- 55
L+G GSGK+TL LAG L S SG + ++G D+ E R + Q
Sbjct: 322 LVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378
Query: 56 --DIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREG 113
+ MTV + LA L A +A V E
Sbjct: 379 SLNPR---MTVGDILAEP------------LRIHGGGSGAE-----------RRARVAE- 411
Query: 114 QEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 173
+L+L V D +SGGQR+RV L L +DE +
Sbjct: 412 ------------LLEL-VGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVS 458
Query: 174 GLDSSTTFHIVNSLGQFNHILNGTAL-ISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEH 232
LD S ++N L L T L IS V + D + ++ DG+IV +GP E
Sbjct: 459 ALDVSVQAQVLNLLKDLQEELGLTYLFISH--DLAVVRYIADRVAVMYDGRIVEEGPTEK 516
Query: 233 VEQF 236
V +
Sbjct: 517 VFEN 520
|
Length = 539 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 1e-08
Identities = 52/236 (22%), Positives = 84/236 (35%), Gaps = 53/236 (22%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTA----AYISQHDI 57
LLG G+GKTTL+ + G L SG + ++G D+ P A Y+ +
Sbjct: 29 VALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRR 85
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
E+TV E L +L +RR K + ++F + R Q A
Sbjct: 86 IFPELTVEENL--------------LLGAYARRRAKRKARLERVYELFPRLKERRKQLAG 131
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
+SGG+++ + L+ L +DE S GL
Sbjct: 132 T--------------------------LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAP 165
Query: 178 STTFHIVNSLGQFNHILNGTALISLL--QPAPEVYNLFDDIILVSDGQIVYQGPLE 231
IV + + L + LL Q A + D ++ G++V +G
Sbjct: 166 K----IVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAA 217
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 47/185 (25%), Positives = 75/185 (40%), Gaps = 30/185 (16%)
Query: 713 PGVLTALMGVTGSGKTTLMDVLAGR-KTRGYITGNITISGY-P-KNQETFTRISGYCEQN 769
G + +G G+GK+T + +L G G + ++G P + +E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTS---GKVRVNGKDPFRRREEYLRSIGLV--- 102
Query: 770 DIHSPYVTVYESLLYSAWLRLSSEVNSKTREM----FVEEVMELVEL----NPLRQALVG 821
+ L + S EV E+ F E + L E+ L+
Sbjct: 103 ------MGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWP--- 153
Query: 822 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN-TVDTGRTV 880
V LS QR R +A L+ P ++F+DEPT GLD A A + ++ + TV
Sbjct: 154 ---VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATV 210
Query: 881 VCTIH 885
+ T H
Sbjct: 211 LLTTH 215
|
Length = 325 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 32/223 (14%)
Query: 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL 734
++ FD ++Y+ + + +HD V+ F G A++G TGSGK+TL+ +
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHD--------VNTEFEQGKYYAIVGQTGSGKSTLIQNI 53
Query: 735 AG--RKTRGYIT-GNITISGYPKNQETFTRISGYCEQNDIHSPYVTVY---ESLLYSAWL 788
+ T G +T +ITI+ K++ + V+ ES L+ +
Sbjct: 54 NALLKPTTGTVTVDDITITHKTKDKYIRP----------VRKRIGMVFQFPESQLFEDTV 103
Query: 789 RLSSEVNSKTREMFVEEVME-----LVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELV 843
K +M ++EV L++L R + P +S Q +++ I L
Sbjct: 104 EREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--FQMSGGQMRKIAIVSILA 161
Query: 844 ANPSIIFMDEPTSGLDARAAAVVMRTVRN-TVDTGRTVVCTIH 885
NP II +DEPT+GLD ++ VMR +++ D +T++ H
Sbjct: 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSH 204
|
Length = 286 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-08
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 34/201 (16%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQ---ET 758
L+ VS RPG A++G GSGK+TL+ +L G + T G ++ + G Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG----SVLLDGVDIRQIDPAD 536
Query: 759 FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL------ 812
R GY Q D Y T+ +++ A + + EE++ EL
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA--PYADD----------EEILRAAELAGVTEF 583
Query: 813 -NPLRQAL---VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR 868
L +G G LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 584 VRRHPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD 642
Query: 869 TVRNTVDTGRTVVCTIHQPSI 889
++ + G+T+V H+ S+
Sbjct: 643 RLKRWL-AGKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 18/189 (9%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 760
+N VS G + L+G G+GKTT ++ G R G I + I+ P ++
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79
Query: 761 RISGYCEQNDIHSPY--VTVYESLLYSAWLRLSSEVNSKTRE--MFVEEVMELVELNPLR 816
I GY Q S + +TV ++++ A L + E + K E ++ ++E + LR
Sbjct: 80 GI-GYLPQE--ASIFRKLTVEDNIM--AVLEIR-EKDLKKAERKEELDALLEEFHITHLR 133
Query: 817 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 876
+ + LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D
Sbjct: 134 DS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR 188
Query: 877 GRTVVCTIH 885
G V+ T H
Sbjct: 189 GIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 20/195 (10%)
Query: 700 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ 756
+L G+ + G + ++G +GSGK+TL+ + G I + ++ KN
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 757 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 816
+ G Q P++TV E++ + +V ++ E +EL+E
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLA--PI---KVKGMSKAEAEERALELLEK---- 122
Query: 817 QALVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 871
VGL LS Q++R+ IA L NP ++ DEPTS LD V+ ++
Sbjct: 123 ---VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK 179
Query: 872 NTVDTGRTVVCTIHQ 886
+ + G T+V H+
Sbjct: 180 DLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 19/190 (10%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 761
L G+S + G + ++G +GSGK+TL+ L G G IT + G K+ R
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 762 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG 821
G Q P++TV E++ + +V ++ E+ +EL+E VG
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVTLA--PV---KVKKLSKAEAREKALELLEK-------VG 125
Query: 822 LPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 876
L LS Q++R+ IA L +P ++ DEPTS LD V+ +++ +
Sbjct: 126 LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185
Query: 877 GRTVVCTIHQ 886
G T++ H+
Sbjct: 186 GMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 13/161 (8%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ--ET 758
+N S G + +MG++GSGK+TL+ +L TRG I I+ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 759 FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 818
+ Q+ P+ TV E++ + L + V RE E +ELV L
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFG--LEVQG-VPKAEREERALEALELVGLEGYADK 160
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
N LS ++R+ +A L +P I+ MDE S LD
Sbjct: 161 YP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-08
Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 35/185 (18%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFT 760
L+ S +PG AL+G +GSGK+T+ ++AG + G I G P+ +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 761 RISG---YCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 817
++ +Q DI TV ++L + W + +++ + +
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPD----------ADLVRACKDAAIHD 596
Query: 818 ALVGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
+ PG G E QR+RL IA LV NPSI+ +DE TS LD ++
Sbjct: 597 VITSRPG--GYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654
Query: 867 MRTVR 871
+R
Sbjct: 655 DDNLR 659
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 30/178 (16%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISGYPKNQ 756
L ++ + +TAL+G +G GK+TL+ D++ G + ITG+I +G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR----ITGDILYNGENIMD 77
Query: 757 ET-----FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 811
R G Q P ++YE++ Y R+ E N KT + VE+ ++
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGP--RIHGEKNKKTLDTIVEKSLKGAA 134
Query: 812 L-----NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 864
L + L + + L G Q++RL IA L NP +I MDEP S LD A A
Sbjct: 135 LWDEVKDRLHDSALSLSG------GQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 64/243 (26%), Positives = 102/243 (41%), Gaps = 65/243 (26%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-----------VPQRTAAYI 52
++GP GSGK+T++ L D S SG + +G D+ E VPQ T +
Sbjct: 32 IVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDSLRRAIGVVPQDTVLF- 87
Query: 53 SQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDA-DIDVFMKAVVR 111
+D T+ + + R PDA D +V
Sbjct: 88 --ND------TIGYNIRY-GR------------------------PDATDEEV------I 108
Query: 112 EGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEI 171
E +A I D I++ D DT+VG+ L+ +SGG+++RV ++ L +DE
Sbjct: 109 EAAKAAQIHDKIMRFPD---GYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEA 164
Query: 172 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231
++ LD+ T I +L + G I + + N D II++ DG+IV +G
Sbjct: 165 TSALDTHTEREIQAAL---RDVSKGRTTIVIAHRLSTIVNA-DKIIVLKDGRIVERGT-- 218
Query: 232 HVE 234
H E
Sbjct: 219 HEE 221
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 15/146 (10%)
Query: 719 LMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFTRISGYCEQNDIHSPY 775
L+G +G GKTTL+ +LAG + G I ++ P + R Q+ P+
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 776 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 835
+TV E++ + L++ + + V E + LV+L + LS Q++R
Sbjct: 57 MTVEENVAFG--LKMRKVPRA-EIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQR 108
Query: 836 LTIAVELVANPSIIFMDEPTSGLDAR 861
+ +A LV P I+ +DEP S LD +
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 4e-08
Identities = 54/244 (22%), Positives = 96/244 (39%), Gaps = 54/244 (22%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAY-IS---QHDI 57
L+GP G+GKTTL ++G L + SG V ++G D+ P A I Q
Sbjct: 29 HGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQI-P 84
Query: 58 HI-GEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
+ E+TV E + +A+ + + + RE +EA
Sbjct: 85 RLFPELTVLENVMVAAQARTGSG------------------------LLLARARREEREA 120
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
+ +L+ + L AD G+ +S GQ++R+ L L +DE + GL+
Sbjct: 121 RERAEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLN 175
Query: 177 SSTTFHIVNSLGQFNHILNGTA--LISLLQPAPE-----VYNLFDDIILVSDGQIVYQGP 229
T + + + G L+ E V +L D + ++ G+++ +G
Sbjct: 176 PEETEELAELIRELRE--RGITVLLV-------EHDMDVVMSLADRVTVLDQGRVIAEGT 226
Query: 230 LEHV 233
+ V
Sbjct: 227 PDEV 230
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 59/187 (31%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLK-ASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEM 62
++GP GSGK+TL + G + G++ ++G D I E+
Sbjct: 35 IMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGED-------------------ILEL 73
Query: 63 TVRE------TLAFS--ARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQ 114
+ E LAF GV + + ++ R A I+P+ ++E
Sbjct: 74 SPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEF------IKELKE-- 125
Query: 115 EANVITDYILKVLDLDVCADTVVGDEMLR-----GISGGQRKRVTTGEMLVGPAHALFMD 169
++L LD +E L G SGG++KR ++L+ +D
Sbjct: 126 --------KAELLGLD--------EEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILD 169
Query: 170 EISTGLD 176
E +GLD
Sbjct: 170 EPDSGLD 176
|
Length = 251 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 21/201 (10%)
Query: 695 GVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY-- 752
G K+ L VS + G + ++G +G+GK+TL+ + G + +G++ + G
Sbjct: 12 GDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDL 69
Query: 753 ----PKNQETFTRISGYCEQ--NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEV 806
K R G Q N + S TV+E++ L ++ V E V E+
Sbjct: 70 TLLSGKELRKARRRIGMIFQHFNLLSSR--TVFENVALP--LEIAG-VPKAEIEERVLEL 124
Query: 807 MELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
+ELV L A P LS Q++R+ IA L NP ++ DE TS LD +
Sbjct: 125 LELVGLEDKADAY---PA--QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSI 179
Query: 867 MRTVRNT-VDTGRTVVCTIHQ 886
+ +R+ + G T+V H+
Sbjct: 180 LALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 5e-08
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 690 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITI 749
E++ L+ VS + G + AL+G GSGK+TL+ +AG G I I
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS--GEILI 58
Query: 750 SGYPKNQ---ETFTRISGYCEQ 768
G + E R GY Q
Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 60/255 (23%), Positives = 92/255 (36%), Gaps = 52/255 (20%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ-RTAAYISQHDIHIGEM 62
LLGP G GKTTL+ LAG SG + +G D+ P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
TV E +AF + + V P A+I + +R Q + ++
Sbjct: 58 TVEENVAFGLKMRKV--------------------PRAEIKPRVLEALRLVQ----LEEF 93
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 182
D +SGGQ++RV LV L +DE + LD
Sbjct: 94 ---------------ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQ 138
Query: 183 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGF 242
+ L L G + + E + D I ++ G+I G E + +
Sbjct: 139 MQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI--------Y 189
Query: 243 KCPKRKGIADFLQEV 257
+ P +A F+ E+
Sbjct: 190 EEPANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 5e-08
Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 24/168 (14%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYPKNQETFTR 761
L G+S + G AL+G TG GK+TL+ +L TR + G I ++G P
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-------- 403
Query: 762 ISGYCEQNDIHSPYVTVYESL-LYSAWLR--LSSEVNSKTREMFVEEVMELVELNPLRQA 818
I+ Y E + V + + L+SA LR L + + E +E V++ V L L +
Sbjct: 404 IADYSEA-ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIE-VLQQVGLEKLLED 461
Query: 819 LVGLP---GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
GL G G LS +++RL IA L+ + ++ +DEPT GLDA
Sbjct: 462 DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509
|
Length = 574 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 5e-08
Identities = 36/192 (18%), Positives = 65/192 (33%), Gaps = 5/192 (2%)
Query: 1001 IFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYRE 1060
I L+FG G + + F+ V + VL L R +
Sbjct: 60 IIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGT 119
Query: 1061 KGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMI---GFEWTAAKFFWFLFFMFFS 1117
+ SP++ F + +PY+ V + L++ + G + L +
Sbjct: 120 LERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLG-SLLLLLLLLLLL 178
Query: 1118 LLYFTFFGMMLVAWTPNH-HIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIA 1176
LL G++L + + AS V L +SG P +P W + + NP+
Sbjct: 179 LLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLT 238
Query: 1177 WTLYGFFASQFG 1188
+ + G
Sbjct: 239 YAIDALRYVYLG 250
|
Length = 286 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 718 ALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP---KNQETFTRISGYCEQN---DI 771
A++G G+GK+TL G +G++ I G P +N + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 772 HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 831
SP TV + + + ++ ++ +T V + ++ L LR + P + LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQ 886
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197
|
Length = 277 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 6e-08
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 21/209 (10%)
Query: 695 GVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTT----LMDVL--AGRKTRGYIT-GNI 747
++ + VS PG + ++G +GSGK+T LM +L GR T G +
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 748 TISGYPKNQET---FTRISGYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMF 802
+ G + + RI Q+ + S P +T+ + + LRL + +
Sbjct: 76 DLLGLSEREMRKLRGKRI-AMIFQDPMTSLNPVMTIGDQI--REALRLHGKGSRAEARKR 132
Query: 803 VEEVMELVEL-NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
E++E V L +P R+ P + LS R+R+ IA+ L P ++ DEPT+ LD
Sbjct: 133 AVELLEQVGLPDPERRDR--YP--HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVT 188
Query: 862 AAAVVMRTVRN-TVDTGRTVVCTIHQPSI 889
A ++ +++ + G V+ H +
Sbjct: 189 TQAQILDLLKDLQRELGMAVLFITHDLGV 217
|
Length = 539 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 6e-08
Identities = 54/224 (24%), Positives = 89/224 (39%), Gaps = 43/224 (19%)
Query: 713 PGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQ-NDI 771
G L L+G G+GKTTL+ + G G + ++G + R GY Q ++
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPA--KGTVKVAGASPGKGW--RHIGYVPQRHEF 60
Query: 772 HSPY-VTVYESLLYS-----AWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 825
+ ++V +++ WLR + V + + V L L VG
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRPVG---- 112
Query: 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 885
LS QR+R+ +A L PS++ +DEP +GLD ++ G ++ T H
Sbjct: 113 -ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
Query: 886 QPSIDIFEAFDA--------------GIPGVSKIRDGYNPATWM 915
D+ +A G P +++D PA WM
Sbjct: 172 ----DLAQAMATCDRVVLLNGRVIADGTP--QQLQD---PAPWM 206
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 58/233 (24%), Positives = 91/233 (39%), Gaps = 53/233 (22%)
Query: 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL 734
S+ F+ + Y M+++G L+ +S G AL+G TGSGK+TLM
Sbjct: 2 SIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQHF 53
Query: 735 AGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEV 794
+G ITI+GY ET + + V++ E
Sbjct: 54 NALLKPS--SGTITIAGYHITPETGNK-----NLKKLRKKVSLVFQF----------PEA 96
Query: 795 NSKTREMFVEEVMELVELNPLR----------QALVGLPGVNGLSTE------------Q 832
++F V++ VE P +AL L V GLS + Q
Sbjct: 97 -----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELSGGQ 150
Query: 833 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 885
+R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H
Sbjct: 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTH 203
|
Length = 287 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 7e-08
Identities = 55/235 (23%), Positives = 103/235 (43%), Gaps = 59/235 (25%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQHDIHIG 60
L+G G GK+T++ L D + SG++ +G D+ + + +SQ + +
Sbjct: 34 LVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWLRSQIGLVSQ-EPVLF 89
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
+ T+ E + + + D E+AAK +AN I
Sbjct: 90 DGTIAENIRYG--------KPD--ATDEEVEEAAK-------------------KAN-IH 119
Query: 121 DYILKVLDLDVCADTVVGDEMLRG--ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS 178
D+I+ + D DT+VG+ RG +SGGQ++R+ L+ L +DE ++ LD+
Sbjct: 120 DFIMSLPD---GYDTLVGE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAE 173
Query: 179 TTFHIVNSLGQFNHILNGTALI-----SLLQPAPEVYNLFDDIILVSDGQIVYQG 228
+ + +L + + T ++ S ++ A D I ++ +GQ+V QG
Sbjct: 174 SEKLVQEALDRA--MKGRTTIVIAHRLSTIRNA-------DLIAVLQNGQVVEQG 219
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 7e-08
Identities = 60/258 (23%), Positives = 95/258 (36%), Gaps = 84/258 (32%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTA---AYISQHDI 57
+ +LGP G+GK+TL+ AL+G+L SG+V NG + ++ P A A + QH
Sbjct: 30 VVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQH-- 84
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+L+F + V V + R P E +
Sbjct: 85 --------SSLSFPFTVEEV-------VAMGR-------APHG----------LSRAEDD 112
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRG-----ISGGQRKRVTTGEMLV------GPAHAL 166
+ L +DL L G +SGG+++RV +L GP L
Sbjct: 113 ALVAAALAQVDLA----------HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWL 162
Query: 167 FMDEISTGLDSSTTFHIVNSLGQFN-----------HILNGTALISLLQPAPEVYNLFDD 215
+DE ++ LD + H++ Q H LN A + D
Sbjct: 163 LLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYA------------DR 210
Query: 216 IILVSDGQIVYQGPLEHV 233
I+L+ G++V G V
Sbjct: 211 IVLLHQGRLVADGTPAEV 228
|
Length = 258 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 7e-08
Identities = 64/270 (23%), Positives = 98/270 (36%), Gaps = 59/270 (21%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTA----AYISQHDI 57
++G G+GK+TL L L L+ SG V +G D+ R I QH
Sbjct: 37 IIGYSGAGKSTL-LRLINLLERP--TSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+ TV E +AF GV + E ++
Sbjct: 94 LLSSRTVFENVAFPLELAGV----------PKAEIKQRVAE------------------- 124
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
+L+++ L AD +SGGQ++RV L L DE ++ LD
Sbjct: 125 -----LLELVGLSDKADRYPAQ-----LSGGQKQRVAIARALANNPKILLCDEATSALDP 174
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVY-NLFDDIILVSDGQIVYQGPLEHVEQF 236
TT I+ L N L T I L+ EV + D + ++ G++V +G + V
Sbjct: 175 ETTQSILELLKDINRELGLT--IVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV--- 229
Query: 237 FISMGFKCPKRKGIADFLQEVTSRKDQEQY 266
F PK +F+ E E+
Sbjct: 230 -----FANPKHAITQEFIGETLEIDLPEEL 254
|
Length = 339 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 8e-08
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 23/166 (13%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG--YITG-NITISGYPKNQET 758
+N A G + +MG++GSGK+T + +L T G +I G NI + +E
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 759 FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 818
+ G Q P++T+ ++ L + R+ E+ +EL++L
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPEL---LGWPEQERK---EKALELLKL------ 116
Query: 819 LVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
VGL + LS ++R+ +A L A P I+ MDE S LD
Sbjct: 117 -VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALD 161
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 8e-08
Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 10/157 (6%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
L GV+ + G +L+G +G GK+TL+++++G G + + G + R+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS--GGVILEGKQITEPGPDRMV 58
Query: 764 GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 823
+ QN P++TV E+ + A R+ +++ R VEE + LV L +A P
Sbjct: 59 VF--QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVG---LTEAADKRP 112
Query: 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860
G LS ++R+ IA L P ++ +DEP LDA
Sbjct: 113 G--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 9e-08
Identities = 60/254 (23%), Positives = 90/254 (35%), Gaps = 84/254 (33%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ------RTAAYISQH 55
++GP GSGK+TL+ + G L SG+V +G D+ R + Q
Sbjct: 29 LAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQS 85
Query: 56 DIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQE 115
+TV E +AF R LS E
Sbjct: 86 GALFDSLTVFENVAFPLR---------EHTRLSEEE------------------------ 112
Query: 116 ANVITDYILKVLDLDVCADTVVGDEMLRG--------ISGGQRKRVTTGEMLVGPAHAL- 166
I + +L+ L+ VG LRG +SGG +KRV A AL
Sbjct: 113 ---IREIVLEKLEA-------VG---LRGAEDLYPAELSGGMKKRV-------ALARALA 152
Query: 167 ------FMDEISTGLDSSTTFHIVNSLGQFNHILNGTALI---SLLQPAPEVYNLFDDII 217
DE + GLD + I + + L T+++ L + + D I
Sbjct: 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL----DTAFAIADRIA 208
Query: 218 LVSDGQIVYQGPLE 231
++ DG+IV +G E
Sbjct: 209 VLYDGKIVAEGTPE 222
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 9e-08
Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 13/178 (7%)
Query: 711 FRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG--YPKNQETFTRISGYCEQ 768
F +TA +G G+GKTT + +L G +G + + G N + + G C Q
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKDIETNLDAVRQSLGMCPQ 1010
Query: 769 NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 828
++I ++TV E +L+ A L+ S + ++ +E ++E L+ R L
Sbjct: 1011 HNILFHHLTVAEHILFYAQLKGRSWEEA---QLEMEAMLEDTGLHHKRNE-----EAQDL 1062
Query: 829 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQ 886
S +++L++A+ V + ++ +DEPTSG+D + + + +GRT++ + H
Sbjct: 1063 SGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK-YRSGRTIIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQ 54
+ L+GP GSGK+TL+ A+AG L + SG++ +G D+ + + R Y+ Q
Sbjct: 27 IVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 55/244 (22%), Positives = 90/244 (36%), Gaps = 70/244 (28%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ------RTAAYISQHDI 57
L+G GSGK+TL A+ G L SG + ++G D+ + + + + Q
Sbjct: 36 LVGESGSGKSTLARAILG-LLK--PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQ--- 89
Query: 58 HIGE--------MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAV 109
+ MT+ E +A R G LS++E + + + V
Sbjct: 90 ---DPMSSLNPRMTIGEQIAEPLRIHGK---------LSKKEARKEAVLLLLVGV----- 132
Query: 110 VREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 169
G V+ Y E+ SGGQR+RV L L D
Sbjct: 133 ---GLPEEVLNRYP---------------HEL----SGGQRQRVAIARALALNPKLLIAD 170
Query: 170 EISTGLDSSTTFHIVNSLGQFNHILNGTAL-----ISLLQPAPEVYNLFDDIILVSDGQI 224
E ++ LD S I++ L + L T L + + V + D + ++ G+I
Sbjct: 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV------VAKIADRVAVMYAGKI 224
Query: 225 VYQG 228
V +G
Sbjct: 225 VEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 43/235 (18%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYIS---QHDIH 58
T L+GP G GK+TL+ A L SG V + ++ A ++ QH +
Sbjct: 31 TALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSRQLARRLALLPQHHLT 87
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANV 118
+TVRE LV R P ++ R E N
Sbjct: 88 PEGITVRE-----------------LVAYGRS-------P------WLSLWGRLSAEDNA 117
Query: 119 ITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS 178
+ ++ ++ AD + D +SGGQR+R +L + +DE +T LD +
Sbjct: 118 RVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDIN 172
Query: 179 TTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
++ + + N G ++++L + D ++++++G ++ QG E V
Sbjct: 173 HQVELMRLMRELNT--QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225
|
Length = 255 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 43/200 (21%), Positives = 77/200 (38%), Gaps = 44/200 (22%)
Query: 712 RPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN-------------QET 758
R G + L+G G GK+T + +LAG+ + N+ P + Q
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGK-----LKPNLGKFDDPPDWDEILDEFRGSELQNY 78
Query: 759 FTRISGYCEQNDIHSP-YVTVYESLLYSAWLRLSSEVNSKTREM--------FVEEVMEL 809
FT++ + I P YV + V K E+ ++E+++
Sbjct: 79 FTKLLEG-DVKVIVKPQYVD-----------LIPKAVKGKVGELLKKKDERGKLDELVDQ 126
Query: 810 VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 869
+EL + ++ LS + +R+ IA L + F DEP+S LD + R
Sbjct: 127 LELRHVLDR-----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARL 181
Query: 870 VRNTVDTGRTVVCTIHQPSI 889
+R + V+ H ++
Sbjct: 182 IRELAEDDNYVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 17/186 (9%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFT 760
LL +S G L L G G+GKTTL+ ++AG +G I K+ T+
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEI--LFERQSIKKDLCTYQ 73
Query: 761 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 820
+ + +PY+T+ E+ LY +++ + + E+ L L L
Sbjct: 74 KQLCFVGHRSGINPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYPC 125
Query: 821 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTV 880
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G V
Sbjct: 126 GL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180
Query: 881 VCTIHQ 886
+ T HQ
Sbjct: 181 LLTSHQ 186
|
Length = 200 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 46/195 (23%), Positives = 70/195 (35%), Gaps = 42/195 (21%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE 757
K +L GV+ + G + ALMG GSGK+TL + G G I G
Sbjct: 11 GGKEIL-KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG------ 63
Query: 758 TFTRISGYCEQNDIHSPYVTVYESL---LYSAWLRLSSEVNSKTREMFVEEVMELVELNP 814
DI + E ++ A+ E+ F+ V E
Sbjct: 64 -----------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE------ 103
Query: 815 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 874
G S ++KR I L+ P + +DEP SGLD A +V +
Sbjct: 104 ------------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR 151
Query: 875 DTGRTVVCTIHQPSI 889
+ G++V+ H +
Sbjct: 152 EEGKSVLIITHYQRL 166
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 2e-07
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQHDI 57
++GP GSGK+TL+ L D + SG++ +G D+ + + + AY+ Q D
Sbjct: 30 KVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQ-DP 85
Query: 58 HIGEMTVRE 66
+ T+RE
Sbjct: 86 FLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 55/236 (23%), Positives = 88/236 (37%), Gaps = 43/236 (18%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTA---AYISQHDI 57
+T LLGP GSGK+TL+ LAG L +G V G D+H + A A + Q
Sbjct: 29 LTGLLGPNGSGKSTLLRLLAGALRP---DAGTVDLAGVDLHGLSRRARARRVALVEQDSD 85
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+TVR+ +A L R + D+ D AVV
Sbjct: 86 TAVPLTVRDVVA-----------------LGRIPHRSLWAGDSPHDA---AVVDRALART 125
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
++ D + +SGG+R+RV L L +DE + LD
Sbjct: 126 ELSHL---------------ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDV 170
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
+ + + G +++ L + D ++++ G++V GP V
Sbjct: 171 RAQLETLALVREL--AATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 51/240 (21%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAA------YISQHDI 57
+LG GSGK+TL+ + G L G++ +G D+ + + + Q
Sbjct: 39 ILGGSGSGKSTLLRLILGLL---RPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADID--VFMKAVVREGQE 115
+TV E +AF L E ++ +P++ I V MK
Sbjct: 96 LFSSLTVFENVAF------------PLREHTK-------LPESLIRELVLMK-------- 128
Query: 116 ANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 175
L+++ L D +SGG RKRV + LF+DE ++GL
Sbjct: 129 --------LELVGLR----GAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGL 176
Query: 176 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235
D + I + + N L T ++ + + + D + +++DG+++ +G E +
Sbjct: 177 DPISAGVIDELIRELNDALGLTVIM-VTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 57/224 (25%), Positives = 91/224 (40%), Gaps = 46/224 (20%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEM 62
LLGP G GKTT + +AG + + SG++ G D+ + P R A + Q+ M
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHM 87
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRR-EKAAKIIPDADIDVFMKAVVREGQEANVITD 121
TV + +AF + + V E+ R + A+++ I+
Sbjct: 88 TVYDNIAFGLKLRKVPKD-----EIDERVREVAELL---QIE------------------ 121
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
+LD + +SGGQR+RV G +V MDE + LD+
Sbjct: 122 ---HLLDRKP-----------KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRV 167
Query: 182 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIV 225
+ L + L GT I + E + D I +++DGQI
Sbjct: 168 QMRAELKRLQQRL-GTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 30/173 (17%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISG---YP 753
L G+ F +TAL+G +G GK+T + D++ G ITGN+++ G Y
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT----ITGNVSLRGQNIYA 76
Query: 754 KNQET--FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 811
N++ + G Q P+ ++YE+++Y LRL+ + + VE ++
Sbjct: 77 PNEDVVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAA 133
Query: 812 L-----NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
+ + L ++ + L G Q++R+ IA L P +I +DEPTS LD
Sbjct: 134 IWDEVKDHLHESALSLSG------GQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 51/158 (32%), Positives = 74/158 (46%), Gaps = 19/158 (12%)
Query: 716 LTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISG---YPKNQETFTRIS-G 764
+TAL+G +G GK+TL+ D++ G K ITG +T+ G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 765 YCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 824
Q P +++YE++ Y LR + K + VE + L + +
Sbjct: 87 MVFQKPNPFP-MSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHA 143
Query: 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 862
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 144 F-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 44/197 (22%), Positives = 83/197 (42%), Gaps = 42/197 (21%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFT 760
L ++ G L A++G GSGK++L+ L G K G ++ +I+
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA---------- 69
Query: 761 RISGYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 817
Y Q P++ T+ E++L+ + E E+V++ L P +
Sbjct: 70 ----YVSQ----EPWIQNGTIRENILF------GKPFD----EERYEKVIKACALEPDLE 111
Query: 818 AL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV 870
L +G G+N LS Q++R+++A + ++ I +D+P S +DA +
Sbjct: 112 ILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 871 -RNTVDTGRTVVCTIHQ 886
+ +T + HQ
Sbjct: 171 ILGLLLNNKTRILVTHQ 187
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 21/166 (12%)
Query: 707 VSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISG---YPKNQ 756
V+ P +TA +G +G GK+T++ +V+ G + G + + G Y
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPG----ARVEGEVLLDGEDLYGPGV 78
Query: 757 ETFT--RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-N 813
+ R G Q P +++ ++++ A L+L+ N K + VE+ + L N
Sbjct: 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLWN 136
Query: 814 PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
++ L PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 137 EVKDRL-DKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 56/236 (23%)
Query: 678 FDEITYSVDMPQEMKRRGVHDDKLVLLNGVSG-------AFRPGVLTALMGVTGSGKTTL 730
FD I+ V++P+E++ VH GV+G RPG + ++G G GK+T
Sbjct: 64 FDAISI-VNLPEELEEEVVHR------YGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTA 116
Query: 731 MDVLAGRKTRGYITGNI-TISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLR 789
+ +LAG + N+ P E R G QN Y LY LR
Sbjct: 117 LKILAGE-----LKPNLGRYEDPPSWDEVIKRFRGTELQN---------YFKKLYEGELR 162
Query: 790 LSSE----------VNSKTREM--------FVEEVMELVELNPL--RQALVGLPGVNGLS 829
+ V K E+ +EV+E + L + R V+ LS
Sbjct: 163 AVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRD-------VSELS 215
Query: 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 885
+ +R+ IA L+ + + F DEP+S LD R R +R + G+ V+ H
Sbjct: 216 GGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-07
Identities = 40/181 (22%), Positives = 64/181 (35%), Gaps = 48/181 (26%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNG----HDMHEFVPQRT-AAYISQH- 55
LLG G+GK+TL+L L G L SG V +G + + +R + Q
Sbjct: 21 LALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP 77
Query: 56 DIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQE 115
D + V + +AF G + +A++ + VRE
Sbjct: 78 DDQLFAADVDQDVAFGPLNLG--------------------LSEAEV----ERRVREALT 113
Query: 116 ANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 175
A + + +SGG++KRV + L +DE + GL
Sbjct: 114 AVGASGL---------------RERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158
Query: 176 D 176
D
Sbjct: 159 D 159
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 54/232 (23%), Positives = 87/232 (37%), Gaps = 61/232 (26%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDM--HEFVPQRTAAYISQHDIHIGE 61
LGP G+GKTT M + G + SG++T++G + +R A I +
Sbjct: 31 FLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFY-PN 86
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
+T RE L AR I ID
Sbjct: 87 LTARENLRLLAR--------------------LLGIRKKRIDE----------------- 109
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
+L V+ L + ++G S G ++R+ L+G L +DE + GLD
Sbjct: 110 -VLDVVGLK-----DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG-- 161
Query: 182 HIVNSLGQFNHILN---GTALIS--LLQPAPEVYNLFDDIILVSDGQIVYQG 228
+ L + L T LIS LL E+ + D I +++ G+++ +G
Sbjct: 162 --IKELRELILSLRDQGITVLISSHLLS---EIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 30/185 (16%)
Query: 689 QEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTT----LMDVLAGRKTRGYIT 744
+ + +R V D V++ +S RPG L+G +GSGK+T L+ ++ +
Sbjct: 289 KGILKRTV--DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ------- 339
Query: 745 GNITISGYPKNQETFTRISGYCEQ--------NDIHSPYVTVYESLLYSAWLRL-SSEVN 795
G I G P + ++ + N +P + V + + LR+ ++
Sbjct: 340 GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLS 397
Query: 796 SKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 854
+ RE V VME V L+P R P S QR+R+ IA L+ PS+I +DEP
Sbjct: 398 AAQREQQVIAVMEEVGLDPETRHRY---PA--EFSGGQRQRIAIARALILKPSLIILDEP 452
Query: 855 TSGLD 859
TS LD
Sbjct: 453 TSSLD 457
|
Length = 529 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 34/224 (15%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
L+ VS R G + +L G G+GK+TLM VL+G G G I G + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL---QASNIR 77
Query: 764 GYCEQND---IHS-----PYVTVYESLLYSAWLRLSSEVNSKTR----EMFVE--EVMEL 809
E+ IH ++V E++ L +E+ M++ +++
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIF------LGNEITPGGIMDYDAMYLRAQKLLAQ 130
Query: 810 VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 869
++L+ P V L Q++ + IA L ++ +DEPT+ L AV++
Sbjct: 131 LKLD----INPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185
Query: 870 VRNTVDTGRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDGYNPAT 913
+R+ G + H+ + ++ D + IRDG + T
Sbjct: 186 IRDLKAHGIACIYISHKLN-EVKAISDT----ICVIRDGRHIGT 224
|
Length = 506 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 23/168 (13%)
Query: 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI---TGNITISGYPKNQET 758
V +N VS R G + +MG++GSGK+TL+ R I +G + I G +
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLL-----RCINRLIEPTSGKVLIDGQDIAAMS 92
Query: 759 FTRIS-------GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 811
+ Q+ P+ TV E++ + ++ V RE E +ELV
Sbjct: 93 RKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVG 149
Query: 812 LNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
L + LS ++R+ +A L +P I+ MDE S LD
Sbjct: 150 LEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 3e-07
Identities = 51/211 (24%), Positives = 99/211 (46%), Gaps = 28/211 (13%)
Query: 692 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL--AGRKTRGYIT----- 744
KR G H+ +L GVS G + +++G +GSGK+T + + + + G I
Sbjct: 13 KRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQT 68
Query: 745 --------GNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVN 795
G + ++ + + TR++ + ++ S ++TV E+++ + L S+
Sbjct: 69 INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS-HMTVLENVMEAPIQVLGLSKQE 127
Query: 796 SKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 855
++ R + + + E +A P LS Q++R++IA L P ++ DEPT
Sbjct: 128 ARERAVKYLAKVGIDE-----RAQGKYP--VHLSGGQQQRVSIARALAMEPEVLLFDEPT 180
Query: 856 SGLDARAAAVVMRTVRNTVDTGRTVVCTIHQ 886
S LD V+R ++ + G+T+V H+
Sbjct: 181 SALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYP------KN 755
LN VS + + G AL+G +G GK+TL +L G ++G N++ G P
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG----NVSWRGEPLAKLNRAQ 83
Query: 756 QETFTRISGYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 813
++ F R Q+ I + P TV E + LR ++ R E++ V+L+
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 814 PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 142 D--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 53/202 (26%), Positives = 81/202 (40%), Gaps = 38/202 (18%)
Query: 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 735
L +++ + RR V D L ++G+S R G L+G +GSGK+TL
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTV--DHLRAVDGISLTLRRGQTLGLVGESGSGKSTL----- 329
Query: 736 GRKTRGYI--TGNITISGYPKNQETFTRISGYCEQ------NDIH----------SPYVT 777
G I G I G I G + + SP +T
Sbjct: 330 GLALLRLIPSQGEIRFDG--------QDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMT 381
Query: 778 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLT 837
V ++ ++++ R+ V E +E V L+P P + S QR+R+
Sbjct: 382 V-GQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP--ATRNRYP--HEFSGGQRQRIA 436
Query: 838 IAVELVANPSIIFMDEPTSGLD 859
IA L+ P +I +DEPTS LD
Sbjct: 437 IARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 56/201 (27%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
L+GP G+GK+TL+ + + L SG + NG D+ + R Y+ + IG
Sbjct: 29 FVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDL-RGRAIPYLRR---KIG 81
Query: 61 ----------EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVV 110
+ V E +AF+ GV R E+ +R AA
Sbjct: 82 VVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA---------------- 120
Query: 111 REGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 170
L+++ L + +SGG+++RV +V L DE
Sbjct: 121 -------------LELVGLSHKHRA-----LPAELSGGEQQRVAIARAIVNSPTILIADE 162
Query: 171 ISTGLDSSTTFHIVNSLGQFN 191
+ LD TT+ I+N L + N
Sbjct: 163 PTGNLDPDTTWEIMNLLKKIN 183
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-07
Identities = 56/228 (24%), Positives = 95/228 (41%), Gaps = 45/228 (19%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQHDIHIG 60
+LG GSGK+TL+ LAG D G +T NG ++ Q T + ++Q +H+
Sbjct: 369 ILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQ-RVHLF 424
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
T+R+ L + PDA D + A +++ ++
Sbjct: 425 SGTLRDNLRLAN-------------------------PDAS-DEELWAALQQVGLEKLL- 457
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
+T +G E R +SGG+R+R+ L+ A +DE + GLD T
Sbjct: 458 ------ESAPDGLNTWLG-EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITE 510
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
++ L F H T L+ + D II++ +G+I+ +G
Sbjct: 511 RQVLALL--FEHAEGKTLLMVTHRLRGLER--MDRIIVLDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 4e-07
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 28/169 (16%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYPKNQETFTR 761
L+ +S PG AL+G +GSGK+TL++++ R Y +G I + G+ T
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLI----PRFYEPDSGQILLDGHDLADYTLAS 403
Query: 762 ISGYCEQ--NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 819
+ D+ T+ ++ Y T + E+ + + +
Sbjct: 404 LRRQVALVSQDVVLFNDTIANNIAYGR-----------TEQADRAEIERALAAAYAQDFV 452
Query: 820 VGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
LP G NG LS QR+RL IA L+ + I+ +DE TS LD
Sbjct: 453 DKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALD 501
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISG---YP 753
L G+S + A +G +G GK+T + D++ + + G I I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 754 KNQET--FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 811
K + + G Q P +++E++ Y LR++ ++ VEE ++
Sbjct: 75 KGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAA 131
Query: 812 L-----NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
L + L+++ L G Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 132 LWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
|
Length = 250 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP------KNQ 756
+L VS + G L+G +G GK+TL +L G + G ++ G K +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDRKQR 83
Query: 757 ETFTRISGYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP 814
F R Q+ + P +TV + + LR + ++ ++ + E++++V L
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 815 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 871
+ LP LS Q +R+ IA L P +I +DE S LD AV++ +R
Sbjct: 142 --EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 14/176 (7%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTT----LMDVLAGRKTRGYITGNITISGYPKNQET 758
L+ ++ + + G + AL+G +GSGK+ ++ +L T+ +G I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQ--TSGEILLDGRPLLPLS 58
Query: 759 F-TRISGYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 815
R QN + P T+ + + LR +++ + R + +E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIET--LRSLGKLSKQARALILE-ALEAVGLPDP 115
Query: 816 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 871
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 49/229 (21%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMH-----EFVP-QRTAAYISQHD 56
+L GP GSGKTTL L L G L S G + G +++ E V +R YI Q
Sbjct: 35 ILTGPSGSGKTTL-LTLIGGLRSV--QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAH 91
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
+G +T R+ + + Q S + RE+A + ++AV G
Sbjct: 92 NLLGFLTARQNVQMALELQPNLSYQE------ARERARAM---------LEAV---GLGD 133
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
++ D +SGGQ++RV LV + DE + LD
Sbjct: 134 HL--------------------DYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALD 173
Query: 177 SSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIV 225
S + +V + + T LI + + ++ D I+ + DG+++
Sbjct: 174 SKSGRDVVELMQKLAREQGCTILI--VTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 6e-07
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 16/179 (8%)
Query: 714 GVLTALMGVTGSGKTTLMDVLAGRKT--RGYITGN-ITISGYPKNQETFTRISGYCEQND 770
G + A+MG +G+GK+TL++++AG G I N + +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 771 IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830
++TV +++ L ++N++ +E V + + V + L LP LS
Sbjct: 82 F--AHLTVRQNI--GLGLHPGLKLNAEQQEK-VVDAAQQVGIADY---LDRLP--EQLSG 131
Query: 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPS 888
QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H S
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 7e-07
Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 95/245 (38%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
+ ++GP GSGK++L+ AL G+L+ K SG V+ G + AY+SQ
Sbjct: 33 LVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG----------SIAYVSQ------ 73
Query: 61 E-----MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIP----DADIDVFMKAVVR 111
E T+RE + F G +D E+ K+I + D+++
Sbjct: 74 EPWIQNGTIRENILF-------GKPFDE-------ERYEKVIKACALEPDLEILPDG--- 116
Query: 112 EGQEANVITDYILKVLDLDVCADTVVGDEMLRGI--SGGQRKRVTTGEMLVGPAHALFMD 169
DL T +G+ +GI SGGQ++R++ + A +D
Sbjct: 117 ----------------DL-----TEIGE---KGINLSGGQKQRISLARAVYSDADIYLLD 152
Query: 170 EISTGLDSSTTFHIVNSLGQFNHILNG-----------TALISLLQPAPEVYNLFDDIIL 218
+ + +D+ HI F + + G T + LL A D I++
Sbjct: 153 DPLSAVDAHVGRHI------FENCILGLLLNNKTRILVTHQLQLLPHA-------DQIVV 199
Query: 219 VSDGQ 223
+ +G+
Sbjct: 200 LDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 7e-07
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL--AGRKTRGY-ITGNITISGYP----KN 755
+L+ VS F +T+LMG TGSGKTT + L K GY +G++ + G ++
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 756 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKT-REMFVEEVMELVELNP 814
F R G Q P +++ +++L A +R V K R + + E+ +
Sbjct: 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 815 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 874
++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 875 DTGRTVVCT 883
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 43/191 (22%), Positives = 63/191 (32%), Gaps = 55/191 (28%)
Query: 6 GPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHE--FVPQRTAAYISQHDIHIGEMT 63
GP G GKTTL+ LAG L SG+V +NG + E P R Y+ E++
Sbjct: 33 GPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89
Query: 64 VRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYI 123
E L F A I A + +A
Sbjct: 90 ALENLHFWAA----------------------IHGGAQRTIE---------DA------- 111
Query: 124 LKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHI 183
L + L D +S GQ++R+ + + A +DE +T LD
Sbjct: 112 LAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALD------- 159
Query: 184 VNSLGQFNHIL 194
+ +L
Sbjct: 160 KAGVALLAGLL 170
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 8e-07
Identities = 60/221 (27%), Positives = 87/221 (39%), Gaps = 75/221 (33%)
Query: 687 MPQEMKRRGVH---DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAG 736
+M+ R V +K L V +TA +G +G GK+T + D + G
Sbjct: 16 TEIKMRARDVSVFYGEKQAL-FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDG 74
Query: 737 RKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYV-------------------- 776
+ +TG IT+ G DI+ P +
Sbjct: 75 CR----VTGKITLDG-----------------EDIYDPRLDVVELRARVGMVFQKPNPFP 113
Query: 777 -TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL----------PGV 825
++YE++ Y R+ SK E+ E+VE LR+A GL PG
Sbjct: 114 KSIYENVAYGP--RIHGLARSKA------ELDEIVE-TSLRKA--GLWEEVKDRLHEPG- 161
Query: 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
GLS Q++RL IA + +P +I MDEP S LD A A V
Sbjct: 162 TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 8e-07
Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 20/185 (10%)
Query: 710 AFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTR--ISGYCE 767
G + A++G +G+GK+TL++++AG +T +G I I+G +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 768 QNDIHSPYVTVYES--LLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 825
+N++ + ++TV ++ L S L+L++E K VE V L L LPG
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKLNAEQREK-----VEAAAAQVGLAGF---LKRLPGE 129
Query: 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV--DTGRTVVCT 883
LS QR+R+ +A LV I+ +DEP S LD A M + + + + T++
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDP-ALRAEMLALVSQLCDERKMTLLMV 186
Query: 884 IHQPS 888
H P
Sbjct: 187 THHPE 191
|
Length = 231 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 27/173 (15%), Positives = 59/173 (34%), Gaps = 4/173 (2%)
Query: 1016 TKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQ 1075
+ + + + L + ++ V + E + R +G+ SP+ Y +
Sbjct: 85 PLFNPNSGYAYYLLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGV-SPLKYLLGK 143
Query: 1076 VLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNH 1135
+L + V +I+ + G L L + G +L + N
Sbjct: 144 ILG---DLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNS 200
Query: 1136 HIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFG 1188
A +V ++ L + G + P +P + +W + P + G +G
Sbjct: 201 EAAILVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYG 253
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 9e-07
Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 37/212 (17%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG-YPKNQE 757
++LV LN +S F + ++G +GSGK+TL+ G Y G I + Y +++
Sbjct: 37 NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDKK 94
Query: 758 TFTRISGYCEQNDIHS--------PYV-----------TVYESLLYSAWLRLSSEVNSKT 798
+ I + V T+ + +++ + +K
Sbjct: 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK 154
Query: 799 REMFVEEVMEL----VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 854
F M L +E +P GLS Q++R+ IA L P I+ DEP
Sbjct: 155 LAKFYLNKMGLDDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFDEP 203
Query: 855 TSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQ 886
T+GLD + +M+ + + +TV H
Sbjct: 204 TAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
|
Length = 320 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 52/241 (21%), Positives = 92/241 (38%), Gaps = 53/241 (21%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDM-----HEFVPQRT-AAYISQ 54
++GP G+GK+TL+ + ++ S SG + G D+ + R I Q
Sbjct: 30 FVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQ 86
Query: 55 HDIHIGEMTVRET-----LAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAV 109
H I +TV E L + + + R+ + D + + A+
Sbjct: 87 HYNLIERLTVLENVLHGRLGYKPTWRSLLGRF----------------SEEDKERALSAL 130
Query: 110 VREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 169
R G + D + D +SGGQ++RV L + D
Sbjct: 131 ERVG-----LADKAYQRAD---------------QLSGGQQQRVAIARALAQQPDLILAD 170
Query: 170 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLF-DDIILVSDGQIVYQG 228
E LD T+ +++ L + N T +I+L Q ++ + D I+ + G+IV+ G
Sbjct: 171 EPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDG 228
Query: 229 P 229
Sbjct: 229 A 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 1e-06
Identities = 47/226 (20%), Positives = 90/226 (39%), Gaps = 41/226 (18%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEM 62
L+G G GKTTL+ A+AG + ++ +G++ D+ P +R A + Q+ +
Sbjct: 36 LIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
V + +AF R A+ +P ADI A + D
Sbjct: 95 KVEDNVAFGLR--------------------AQKMPKADI-------------AERVAD- 120
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 182
LK++ L D + +SGG ++R+ + L +DE + LD++ +
Sbjct: 121 ALKLVGL---GD--AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRAN 175
Query: 183 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
+ + + L ++ + + L D ++ DG++ G
Sbjct: 176 MREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 45/232 (19%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGH-----DMHEFVPQRTAAYIS--QHD 56
++GP G+GKTTL+ L G+ S SG VT G + + ++ +S H+
Sbjct: 62 IVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETIFEL-RKRIGLVSSELHE 117
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
TVR+ + S +G Y + A +
Sbjct: 118 RFRVRETVRDVVL-SGFFASIG-IYQEDLTAEDLAAAQWL-------------------- 155
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
L++ + D +S G+++RV LV L +DE + GLD
Sbjct: 156 ------------LELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLD 203
Query: 177 SSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
++N L + AL+ + A E+ F +L+ +G++V QG
Sbjct: 204 LIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 1e-06
Identities = 50/238 (21%), Positives = 88/238 (36%), Gaps = 53/238 (22%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTA----AYISQHD 56
+ LLG G+GKTTL+ + G + SG++ ++G D+ P A AY+ +
Sbjct: 31 IVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGR 87
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
+TV E L + R ++A + + ++F + R Q A
Sbjct: 88 RIFPRLTVEENLL-------------LGAYARRDKEAQERDLEEVYELFPRLKERRNQRA 134
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
G +SGG+++ + L+ L +DE S GL
Sbjct: 135 ---------------------GT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLA 168
Query: 177 SSTTFHIVNSLGQFNHILNGTALISLL---QPAPEVYNLFDDIILVSDGQIVYQGPLE 231
IV + + L +++L Q A + D ++ +G+IV G
Sbjct: 169 PK----IVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAA 222
|
Length = 237 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 60/235 (25%), Positives = 86/235 (36%), Gaps = 61/235 (25%)
Query: 4 LLGPPGSGKTTLM---LALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQH----D 56
LLGP G+GKTTL+ L L ++K +G G +VPQR H D
Sbjct: 11 LLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR-------HEFAWD 63
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
I +V T+ S R +G RR A
Sbjct: 64 FPI---SVAHTV-MSGRTGHIG--------WLRRPCVADFAA------------------ 93
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
L+ + L AD VG+ +SGGQR+RV L L +DE TGLD
Sbjct: 94 ---VRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTGLD 145
Query: 177 SSTT---FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
T + L GTA++ + D ++L+ +G+++ G
Sbjct: 146 MPTQELLTELFIELAG-----AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 716 LTALMGVTGSGKTTLMDVLAGRKTR-GYITGNITISGYP-KNQETFT---RISGYCEQND 770
+TAL+G +G GK+T + + I G + I G KNQ+ + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 771 IHSPYVTVYESLLYSAWLRLSSEVNSKTRE-MFVEEVMELVEL-----NPLRQALVGLPG 824
+ ++YE++ Y+ +L + +K E V + ++ V L + L+Q + L G
Sbjct: 90 VFVK--SIYENISYAP--KLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSG 145
Query: 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 871
Q++RL IA L P ++ +DEPTS LD ++ V+ ++
Sbjct: 146 ------GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 40/211 (18%)
Query: 696 VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT--GNITISGY- 752
+D + +LNG+S G A++G +G+GK+T++ +L R Y G+ITI G
Sbjct: 271 AYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLL----FRFYDVNSGSITIDGQD 326
Query: 753 ---PKNQETFTRISGYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVE 804
Q++ R G Q ND T+ ++ Y T E V
Sbjct: 327 IRDVT-QQSLRRAIGIVPQDTVLFND------TIAYNIKYG--------RPDATAEE-VG 370
Query: 805 EVMELVELNPLRQAL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 857
E +++ Q+L VG G+ LS +++R+ IA ++ NP I+ +DE TS
Sbjct: 371 AAAEAAQIHDFIQSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSA 429
Query: 858 LDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888
LD + +R V GRT + H+ S
Sbjct: 430 LDTHTEQAIQAALRE-VSAGRTTLVIAHRLS 459
|
Length = 497 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 35/201 (17%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTL-------MDVLAGRKTRGYITGNITISGYPKN 755
+L V +PG + G TGSGK++L +D+ G+ + I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL- 90
Query: 756 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 815
+R+S + + + +L+S +R + + K + + E +E+ +L +
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 816 RQALVGLPGVNGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVM 867
++L G G++ + TE QR+ +A V SI+ MDE T+ +D A ++
Sbjct: 139 VKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDM-ATENIL 195
Query: 868 RTVRNTVDTGRTVVCTIHQPS 888
+ V T RTVV H+ S
Sbjct: 196 QKVVMTAFADRTVVTIAHRVS 216
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 64/266 (24%), Positives = 102/266 (38%), Gaps = 71/266 (26%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKA-----SGKVTYNGHDMHEFVPQRTA---AYI 52
+T LLG G+GK+TL+ ALAG L +G VT NG + R A A +
Sbjct: 29 VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVL 88
Query: 53 SQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR--REKAAKIIPDADIDVFMKAVV 110
Q + AFSAR +V L R + A + D ++ +A+
Sbjct: 89 PQ--------AAQPAFAFSAR---------EIVLLGRYPHARRAGALTHRDGEIAWQALA 131
Query: 111 REGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML--VGPAHA--- 165
G A +VG ++ +SGG+ RV +L + P H
Sbjct: 132 LAG-------------------ATALVGRDVTT-LSGGELARVQFARVLAQLWPPHDAAQ 171
Query: 166 ----LFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNL----FDDII 217
L +DE + LD + +++++ + N L + P NL D I
Sbjct: 172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-----NLAARHADRIA 226
Query: 218 LVSDGQIVYQGPL------EHVEQFF 237
+++DG IV G H+ + +
Sbjct: 227 MLADGAIVAHGAPADVLTPAHIARCY 252
|
Length = 272 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 37/204 (18%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 762
+L G++ + G + A+MG GSGK+TL V+AG + G+I G
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 763 S------GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL- 815
+ + Q I P V+ + +LRL+ NSK + L EL+PL
Sbjct: 82 AHLGIFLAF--QYPIEIPGVS------NADFLRLA--YNSKRKF------QGLPELDPLE 125
Query: 816 -------RQALVGLP------GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
+ LVG+ VN G S ++KR I + + + +DE SGLD
Sbjct: 126 FLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDID 185
Query: 862 AAAVVMRTVRNTVDTGRTVVCTIH 885
A ++ + + + +++ H
Sbjct: 186 ALKIIAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 22/208 (10%)
Query: 687 MPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGN 746
M E+K+ G +LN +S + R G A+ G +G GK+TL+ ++A + +G
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT--SGT 59
Query: 747 ITISGYPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFV 803
+ G + E + + YC Q TV ++L++ +R N +
Sbjct: 60 LLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIR-----NRRPDRAAA 113
Query: 804 EEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 863
+++ L P + LS +++R+ + L P I+ +DE TS LD
Sbjct: 114 LDLLARFAL-PDSIL---TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169
Query: 864 ----AVVMRTVRNTVDTGRTVVCTIHQP 887
++ R VR + V+ H
Sbjct: 170 RNIEEMIHRYVR---EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 18/200 (9%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-----ITGNITISG- 751
+DK +L + ++ + +MG +GSGK+TL+ VL R Y + G + G
Sbjct: 21 NDKAILKD-ITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIYDSKIKVDGKVLYFGK 78
Query: 752 --YPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREM--FVEEVM 807
+ + + G Q P++++Y+++ Y L S + RE+ VEE +
Sbjct: 79 DIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP----LKSHGIKEKREIKKIVEECL 134
Query: 808 ELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVM 867
V L + P + LS Q++RLTIA L P ++ MDEPTS +D + +
Sbjct: 135 RKVGLWKEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE 193
Query: 868 RTVRNTVDTGRTVVCTIHQP 887
+ + + +V H P
Sbjct: 194 KLI-TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 13/179 (7%)
Query: 690 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTL---MDVLAGRKTRGYITGN 746
++++ VH K + VS F +TA++G +G GK+T+ ++ + +TG
Sbjct: 6 KLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGK 65
Query: 747 ITISG---YPKNQE--TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREM 801
I + Y + + + R G Q P +++Y++++ A +L+ VN +
Sbjct: 66 ILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADE 123
Query: 802 FVEEVMELVEL-NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
VE ++ V L + ++ L LS Q++RL IA + P +I MDEP S LD
Sbjct: 124 IVESSLKRVALWDEVKDRLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 45/202 (22%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR---KTRGYIT-GNITISGYPKNQETF 759
L +S + +PG ++G TGSGK++L+ L R + G I + IS +
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGL-HDLR 77
Query: 760 TRISGYCEQNDIHSPYVTVYESLLYSAWLR-------LSSEVNSKTREMFVEEVMELVEL 812
+RIS Q + +L+S +R S+ EE+ + +E
Sbjct: 78 SRISI-IPQ-----------DPVLFSGTIRSNLDPFGEYSD----------EELWQALER 115
Query: 813 NPLRQALVGLPG-------VNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 863
L++ + LPG G LS QR+ L +A L+ I+ +DE T+ +D
Sbjct: 116 VGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175
Query: 864 AVVMRTVRNTVDTGRTVVCTIH 885
A++ +T+R TV+ H
Sbjct: 176 ALIQKTIR-EAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 18/152 (11%)
Query: 721 GVTGSGKTTLMDVLAGRKTRGYIT-GNITISGYPKNQ-ETFTRISGYCEQNDIHSPYVTV 778
G +G GK+TL+ ++AG + IT G++ I N R G Q+ P+++V
Sbjct: 36 GPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92
Query: 779 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL--RQALVGLPGVNGLSTEQRKRL 836
E++ S L+L+ + V +V E+++L L R+ LS QR+R+
Sbjct: 93 AENM--SFGLKLAG-AKKEEINQRVNQVAEVLQLAHLLDRKP-------KALSGGQRQRV 142
Query: 837 TIAVELVANPSIIFMDEPTSGLDARAAAVVMR 868
I LVA PS+ +DEP S LDA A V MR
Sbjct: 143 AIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 14/175 (8%)
Query: 719 LMGVTGSGKTTLMDVL----AGRKTRGYITGN-ITISGYPKNQE--TFTRISGYCEQNDI 771
L+G +G+GK++L+ VL R I GN S P ++ R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 772 HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 831
P++TV E+L+ + V +++ + +L++ L+ P LS
Sbjct: 93 LWPHLTVQENLIEA-----PCRVLGLSKDQALARAEKLLKRLRLKPYADRYP--LHLSGG 145
Query: 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQ 886
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
L+GP G GK+TL+ +AG + SG+V +G + P Y+ Q D + +T
Sbjct: 35 LVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLT 89
Query: 64 VRETLAFSARCQGVGSRYDMLVELSRREKAAKII 97
V + +A QGV RE+A +++
Sbjct: 90 VLDNVALGLELQGVPKA-------EARERAEELL 116
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY------ITGNITISGYP 753
+L +S PG +TAL+G G+GK+TL+ LAG T G +TG++T++G P
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEP 72
|
Length = 272 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-06
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQP 887
LS +R+ + IA L N ++ +DEPT+ L + + +R G V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 888 SIDIFEAFDAGIPGVSKIRDG 908
++FE D V+ +RDG
Sbjct: 143 D-EVFEIADR----VTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 55/270 (20%), Positives = 101/270 (37%), Gaps = 41/270 (15%)
Query: 646 RNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLN 705
R + ++ T + + R +T + ++ D LL+
Sbjct: 363 RQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLR------------TPDGQTLLS 410
Query: 706 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGY 765
++ RPG + G +G+GKT+L+ LAG + G+ I P + +
Sbjct: 411 ELNFEVRPGERLLITGESGAGKTSLLRALAGL----WPWGSGRI-SMPADSALL-----F 460
Query: 766 CEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL 822
Q PY+ T+ E+L Y + + + + V+ V L L + L
Sbjct: 461 LPQ----RPYLPQGTLREALCYP---NAAPDFSDAE----LVAVLHKVGLGDLAERLDEE 509
Query: 823 -PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVV 881
LS +++RL A L+ P +F+DE TS LD + + ++ + TV+
Sbjct: 510 DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVI 568
Query: 882 CTIHQPSIDIFEAFDAGIPGVSKIRDGYNP 911
H+P+ F + + G N
Sbjct: 569 SVGHRPT---LWNFHSRQLELLDDAGGQNL 595
|
Length = 604 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 21/192 (10%)
Query: 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 735
+TF ++ + +RR ++D V+ + G A++G TGSGK+TL+ L
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYD--------VNVSIPSGSYVAIIGHTGSGKSTLLQHLN 54
Query: 736 G--RKTRGYIT-GNITISGYPKNQE--TFTRISGYCEQNDIHSPY-VTVYESLLYSAWLR 789
G + T G +T G I+ KN++ + G Q H + TV + + +
Sbjct: 55 GLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF 114
Query: 790 LSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSII 849
SE ++K + E++ELV L + L P LS Q +R+ IA L P ++
Sbjct: 115 GVSEEDAKQK---AREMIELVGLPE--ELLARSP--FELSGGQMRRVAIAGVLAMEPEVL 167
Query: 850 FMDEPTSGLDAR 861
+DEPT+GLD +
Sbjct: 168 VLDEPTAGLDPK 179
|
Length = 290 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 61/249 (24%), Positives = 100/249 (40%), Gaps = 45/249 (18%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYI---SQHDIH 58
T ++GP G GK+TL+ L+ + A G V +G + + + A I +Q+
Sbjct: 36 TAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASKEVARRIGLLAQNATT 92
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANV 118
G++TV+E +A RY +R K D + V + +A
Sbjct: 93 PGDITVQELVA--------RGRYPHQPLFTRWRKE-----DEE-------AVTKAMQATG 132
Query: 119 ITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS 178
IT + +D +SGGQR+R +L + +DE +T LD S
Sbjct: 133 ITHLADQSVDT---------------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS 177
Query: 179 TTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG-PLEHVEQFF 237
++ L + N G L ++L + +I + +G+IV QG P E V
Sbjct: 178 HQIDLLELLSELNRE-KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAEL 236
Query: 238 IS--MGFKC 244
I G +C
Sbjct: 237 IERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 51/190 (26%), Positives = 93/190 (48%), Gaps = 30/190 (15%)
Query: 710 AFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG--YPKNQETFTRISGYCE 767
F G +TA++G +GSGK+TL++++AG +T +G + I+G +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 768 QNDIHSPYVTVYES--LLYSAWLRLSSE----VNSKTREMFVEEVMELVELNPLRQALVG 821
+N++ ++TV ++ L S L+L++E + + + + R
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-------KR----- 124
Query: 822 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAVVMRTVRNTV--DTGR 878
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKM 180
Query: 879 TVVCTIHQPS 888
TV+ HQP
Sbjct: 181 TVLMVTHQPE 190
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 16/189 (8%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP----KNQE 757
L+G++ RPG AL+G +G+GK+TL +L R Y +G I + G E
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL----LRFYDPQSGRILLDGVDLRQLDPAE 411
Query: 758 TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 817
R++ + + + +V E++ Y EV + R E + L
Sbjct: 412 LRARMALVPQDPVLFA--ASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--ALPEGYD 467
Query: 818 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTG 877
+G GV LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + T+ G
Sbjct: 468 TYLGERGV-TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMKG 525
Query: 878 RTVVCTIHQ 886
RT + H+
Sbjct: 526 RTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 53/206 (25%), Positives = 83/206 (40%), Gaps = 33/206 (16%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY------PKNQ 756
+L G++ RPG + A+MG GSGK+TL LAGR+ G + G P+++
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75
Query: 757 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNS--KTREM----------FVE 804
+ Q + P V S L + +N+ R +E
Sbjct: 76 AGEGIFMAF--QYPVEIPGV--------SNQFFLQTALNAVRSYRGQEPLDRFDFQDLME 125
Query: 805 EVMELVELNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 863
E + L+++ L V + G S ++KR I V P + +DE SGLD A
Sbjct: 126 EKIALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDAL 181
Query: 864 AVVMRTVRNTVDTGRTVVCTIHQPSI 889
+V V + D R+ + H I
Sbjct: 182 KIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 32/162 (19%)
Query: 716 LTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISG---YPKNQETFT--RIS 763
+TAL+G +G GK+T + D+++ K I G + + G Y K+ + +
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVK----IEGEVLLDGKNIYDKDVDVVELRKRV 87
Query: 764 GYCEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-----NPLRQ 817
G Q +P+ +++Y+++ Y R+ + K + VE ++ L + L++
Sbjct: 88 GMVFQKP--NPFPMSIYDNVAYGP--RIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143
Query: 818 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
+ + L G Q++RL IA + P +I MDEPTS LD
Sbjct: 144 SALKLSG------GQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 59/234 (25%), Positives = 92/234 (39%), Gaps = 55/234 (23%)
Query: 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL 734
+ ++Y+ + R + D V L G++ TA +G TGSGK+T+M +L
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFD---VNLTIEDGSY-----TAFIGHTGSGKSTIMQLL 53
Query: 735 AG--RKTRGYIT-GNITISGYPKNQETFTRISGYCEQNDIHSPYVTV------YESLLYS 785
G T+G + + I+ KN+ DI V ES L+
Sbjct: 54 NGLHVPTQGSVRVDDTLITSTSKNK-------------DIKQIRKKVGLVFQFPESQLFE 100
Query: 786 -------AWLRLSSEVNSKTREMFVEEVMELV-------ELNPLRQALVGLPGVNGLSTE 831
A+ + V+ + E E + LV E NP LS
Sbjct: 101 ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFE-----------LSGG 149
Query: 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 885
Q +R+ IA L P I+ +DEPT+GLD + +M + +G T+V H
Sbjct: 150 QMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-06
Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 25/168 (14%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
L V+ PG + AL+G G+GK+TLM VL+G G ITI+ N+ +++
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLD-HKLA 77
Query: 764 GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVM--ELVELNPLRQA--- 818
Q I +Y+ L S L+ N ++V +++ +R
Sbjct: 78 A---QLGIG----IIYQEL--SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAM 128
Query: 819 ---LVGL-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858
VGL V LS ++ L IA L+ + +I MDEPTS L
Sbjct: 129 MLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
Length = 510 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 141 MLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALI 200
+ +SGGQR+RV L+ L +DE ++GLD ++ ++ L + G +I
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVI 134
Query: 201 SLLQPAPEVYNLFDDIILVSDGQ 223
+ D +I++ DG+
Sbjct: 135 IVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 3e-06
Identities = 54/180 (30%), Positives = 79/180 (43%), Gaps = 43/180 (23%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHD---MHEFVPQRTAAYISQHDI 57
M LLGP GSGKTTL+ +AG L+ + SG + ++G D +H R ++ QH
Sbjct: 30 MVALLGPSGSGKTTLLRIIAG-LEH--QTSGHIRFHGTDVSRLH--ARDRKVGFVFQHYA 84
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
MTV + +AF L L RRE+ P+A +KA V +
Sbjct: 85 LFRHMTVFDNIAFG------------LTVLPRRER-----PNAAA---IKAKVTQ----- 119
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
+L+++ L AD +SGGQ++RV L L +DE LD+
Sbjct: 120 -----LLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALAVEPQILLLDEPFGALDA 169
|
Length = 353 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 807 MELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
+E VE++ R + LP S ++RL IA LV +P ++FMDEPT GLD A +
Sbjct: 135 LERVEIDAAR--IDDLPTT--FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 867 MRTVRNTV-DTGRTVVCTIH 885
+ +R V + G VV H
Sbjct: 191 LDLLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 19/204 (9%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQET 758
D L VS G T+++G GSGK+T+ ++ G + +G I + +
Sbjct: 20 DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDN 77
Query: 759 FTRIS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVME-LVELNP 814
F ++ G QN + V + Y L E ++ + V E L +++
Sbjct: 78 FEKLRKHIGIVFQNPDNQ---FVGSIVKYDVAFGL--ENHAVPYDEMHRRVSEALKQVDM 132
Query: 815 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT- 873
L +A P N LS Q++R+ IA L NPS+I +DE TS LD A ++ VR
Sbjct: 133 LERA-DYEP--NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVK 189
Query: 874 VDTGRTVVCTIHQPSIDIFEAFDA 897
+ T++ H D+ EA +A
Sbjct: 190 SEHNITIISITH----DLSEAMEA 209
|
Length = 269 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 4e-06
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 16/161 (9%)
Query: 716 LTALMGVTGSGKTTLM-------DVLAGRKTRG--YITGNITISGYPKNQETFTRISGYC 766
+TA +G +G GK+T + D++ G G Y G T S + E TRI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 767 EQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 825
++ +P+ +++++++ Y R + + K E VE+ ++ L + + G
Sbjct: 170 QKP---TPFEMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAG- 223
Query: 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
N LS Q++RL IA + P ++ MDEPTS LD A A +
Sbjct: 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKI 264
|
Length = 329 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-06
Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 43/223 (19%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-----YITGNITISGYPKNQET 758
L+G + PG + AL+G G+GK+T+M VL G TR Y+ +T +G +QE
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 759 FTRISGYCEQNDIHS-----PYVTVYESLLY-----SAWLRLSSEVNSKTREMFVEEVME 808
I IH P +T+ E++ + + R+ ++M+ E
Sbjct: 80 GIGI--------IHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKL 125
Query: 809 LVELNPLR---QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 865
L LN LR LVG LS +++ + IA L +I MDEPT L
Sbjct: 126 LARLN-LRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES 179
Query: 866 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDG 908
+ R +R GR +V H+ +IFE D V+ RDG
Sbjct: 180 LFRVIRELKSQGRGIVYISHRLK-EIFEICDD----VTVFRDG 217
|
Length = 501 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-06
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYPKNQETFTR 761
L ++ G AL+G +GSGK+T+ ++L TR Y G I + G+ T
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 762 ISGYC---EQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 818
+ QN +H T+ ++ Y+ + S E + M M+ + +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARM--AYAMDFIN--KMDNG 469
Query: 819 LVGLPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
L + G NG LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 470 LDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
|
Length = 582 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 27/190 (14%)
Query: 715 VLTALMGVTGSGKTTLM---DVLAGRKTRGYITGNITISG---YPKNQETFT--RISGYC 766
+ ALMG +G GK+TL+ + L + G + + G Y + + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 767 EQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL--------NPLRQA 818
Q P++T+Y+++ + ++L+ V SK +E+ E VE + ++
Sbjct: 91 FQYPNPFPHLTIYDNV--AIGVKLNGLVKSK------KELDERVEWALKKAALWDEVKDR 142
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGR 878
L P LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 143 LNDYPS--NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEY 199
Query: 879 TVVCTIHQPS 888
T+V H P+
Sbjct: 200 TIVLVTHSPA 209
|
Length = 253 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-06
Identities = 57/259 (22%), Positives = 98/259 (37%), Gaps = 65/259 (25%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP--QRTAAYISQ------H 55
LLGP G GKTTL+ +AG S SG++ +G D+ VP +R + Q H
Sbjct: 36 LLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDI-TDVPPEKRPIGMVFQSYALFPH 91
Query: 56 DIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQE 115
MTV E +AF + + + + + + + + ++ F +
Sbjct: 92 ------MTVEENVAFGLKVRKKLKKAE------IKARVEEALELVGLEGFADRKPHQ--- 136
Query: 116 ANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 175
+SGGQ++RV LV L +DE + L
Sbjct: 137 -----------------------------LSGGQQQRVALARALVPEPKVLLLDEPLSAL 167
Query: 176 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235
D+ + L + L T + + E + D I +++DG+I G E +
Sbjct: 168 DAKLREQMRKELKELQRELGITFVY-VTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI-- 224
Query: 236 FFISMGFKCPKRKGIADFL 254
++ P + +ADF+
Sbjct: 225 ------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 57/240 (23%), Positives = 103/240 (42%), Gaps = 48/240 (20%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYIS--QHDIH 58
+T ++GP G+GK+TL L++ +L K SG++T +G ++ + A +S + + H
Sbjct: 29 ITSIIGPNGAGKSTL-LSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENH 85
Query: 59 IG-EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
I +TVR+ + F R+ S+ R +E
Sbjct: 86 INSRLTVRDLVGF--------GRF----PYSQG--------------------RLTKEDR 113
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
I + ++ L L + D L +SGGQR+R +L + +DE LD
Sbjct: 114 RIINEAIEYLHL-----EDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDM 168
Query: 178 STTFHIVNSLGQFNHILNGTALISL--LQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235
+ I+ L + L T ++ L + A Y+ D I+ + +G++V QG + + Q
Sbjct: 169 KHSVQIMKILRRLADELGKTIVVVLHDINFA-SCYS--DHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 35/198 (17%)
Query: 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYP--KNQE 757
+L +G+S G L + G G+GKT+L+ +LAG R G + G P + ++
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ----GEPIRRQRD 70
Query: 758 TFTRISGYC-EQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 816
+ + Y Q I +T E+L + RL + +E L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGD--------DEA--------LW 111
Query: 817 QAL--VGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 869
+AL VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 870 VRNTVDTGRTVVCTIHQP 887
+ + G V+ T HQ
Sbjct: 172 LAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQ 886
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 52/204 (25%), Positives = 80/204 (39%), Gaps = 26/204 (12%)
Query: 700 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL-------AGR---KTRGYITGNITI 749
+L +L VS G AL G +G+GK+TL+ L +GR + G
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 750 SGYPKNQETFTRISGYCEQNDIHSPYVT----VYESLLYSAWLRLSSEVNSKTREMFVEE 805
S + E + GY Q P V+ V E LL RE
Sbjct: 80 SPR-EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLL----------ERGVPREAARAR 128
Query: 806 VMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 865
EL+ + + L LP S +++R+ IA +A+ I+ +DEPT+ LDA V
Sbjct: 129 ARELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQV 187
Query: 866 VMRTVRNTVDTGRTVVCTIHQPSI 889
V+ + G ++ H +
Sbjct: 188 VVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 50/183 (27%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISGYPKNQ 756
L ++ +TAL+G +G GK+T + D++ K I G + + G
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----- 69
Query: 757 ETFTRISGYCEQNDIHS-------------PY-VTVYESLLYSAWLRLSSEVNSKTREMF 802
I Y D++ P+ +++Y+++ Y R + K +
Sbjct: 70 ---QDI--YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGP--RTHGIKDKKKLDEI 122
Query: 803 VEE------VMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 856
VE+ + + V+ + AL GLS Q++RL IA L P ++ MDEPTS
Sbjct: 123 VEKSLKGAALWDEVKDRLKKSAL-------GLSGGQQQRLCIARALAVEPEVLLMDEPTS 175
Query: 857 GLD 859
LD
Sbjct: 176 ALD 178
|
Length = 250 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 6e-06
Identities = 52/250 (20%), Positives = 94/250 (37%), Gaps = 59/250 (23%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHD 56
++G GSGK+T + L ++ + +G++ +G ++ + V ++ + Q
Sbjct: 24 IMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
MT+ + + G E R+EKA E
Sbjct: 81 ALFPHMTILQNTSLGPELLGWP-------EQERKEKA-----------------LE---- 112
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
+LK++ L+ DE+ SGG ++RV L L MDE + LD
Sbjct: 113 ------LLKLVGLEEYEHRY-PDEL----SGGMQQRVGLARALAAEPDILLMDEAFSALD 161
Query: 177 SSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG-------- 228
+ + L + L T ++ + E + D I+++ G+IV G
Sbjct: 162 PLIRDSMQDELKKLQATLQKT-IVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220
Query: 229 PL-EHVEQFF 237
P E+VE+F
Sbjct: 221 PANEYVEEFI 230
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 6e-06
Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 28/196 (14%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISG---YP 753
LN ++ +TAL+G +G GK+T + D++ G K I GN+ G Y
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYS 78
Query: 754 KNQETFT--RISGYCEQNDIHSPYV-TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV 810
N + R G Q +P++ ++Y+++ Y ++ + K + VE+ ++
Sbjct: 79 NNFDILELRRKIGMVFQTP--NPFLMSIYDNISYGP--KIHGTKDKKKLDEIVEQSLKKS 134
Query: 811 EL-NPLRQALVGLPGVNGLSTE--QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVM 867
L N ++ L N LS Q++RL IA L P++I MDEPTS LD + +
Sbjct: 135 ALWNEVKDKL----NTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIE 190
Query: 868 RTVRNTVDTGRTVVCT 883
+ N ++ ++ T
Sbjct: 191 ELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 6e-06
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 32/185 (17%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK--NQETFT- 760
L+G+S F LTAL+G +G GK+T + L + I NI I+G K Q +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL--NRMNDDIE-NIKITGEIKFEGQNIYGS 76
Query: 761 --------RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL 812
+ G Q P+ +VY+++ Y L+++ K +E+ + V E
Sbjct: 77 KMDLVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAG---VKDKELIDQRVEE---- 126
Query: 813 NPLRQALVGLPGVNGL-------STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 865
L+QA + + L S Q++R+ IA L P ++ +DEPTS LD +++
Sbjct: 127 -SLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSE 185
Query: 866 VMRTV 870
+ T+
Sbjct: 186 IEETL 190
|
Length = 251 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 55/202 (27%), Positives = 85/202 (42%), Gaps = 38/202 (18%)
Query: 685 VDMPQEMKRRGV---HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVL 734
+ P +M+ RG+ + D L + +S F +TAL+G +G GK+T + D++
Sbjct: 1 MASPPKMEARGLSFFYGDFQAL-HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLI 59
Query: 735 AGRKTRGYIT-GNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSE 793
G + G I I + R G Q P +++E++ Y LR
Sbjct: 60 PGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYG--LR---- 112
Query: 794 VNSKTREMFVEEVMELVELNPLRQALV-----------GLPGVNGLSTEQRKRLTIAVEL 842
VN + ++ E +E LR A + L GLS Q++RL IA L
Sbjct: 113 VNGVKDKAYLAERVE----RSLRHAALWDEVKDRLHESAL----GLSGGQQQRLCIARAL 164
Query: 843 VANPSIIFMDEPTSGLDARAAA 864
P ++ MDEP S LD A
Sbjct: 165 AVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 6e-06
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 22/186 (11%)
Query: 690 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGY 742
E++ + + + V+ +TA++G +G GKTTL+ D + G +
Sbjct: 5 EIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR---- 60
Query: 743 ITGNITISGY----PKNQETFTRIS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSK 797
+ G I G P+ T R G Q P +++Y+++ + R+ +
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSKH 117
Query: 798 TREMFVEEVMELVEL-NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 856
+ VEE ++ L + ++ L PG LS Q++RL IA L P +I +DEPTS
Sbjct: 118 KLDRIVEESLKKAALWDEVKSEL-NKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTS 175
Query: 857 GLDARA 862
LD A
Sbjct: 176 ALDPIA 181
|
Length = 250 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 6e-06
Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 36/201 (17%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYPKNQETFTR 761
L G++ PG + AL+G +GSGK+T+ +L Y G + + G P
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALL----QNLYQPTGGQVLLDGVP-------- 544
Query: 762 ISGYCEQNDIHSPYVTV-YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 820
+ Y + + +H V E +L+S +R + EE+M + ++
Sbjct: 545 LVQY-DHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPD--EEIMAAAKAANAHDFIM 601
Query: 821 GLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 869
P NG TE Q++R+ IA LV P ++ +DE TS LDA +
Sbjct: 602 EFP--NGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQL 655
Query: 870 VRNTVDT-GRTVVCTIHQPSI 889
++ + RTV+ H+ S
Sbjct: 656 LQESRSRASRTVLLIAHRLST 676
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 6e-06
Identities = 60/244 (24%), Positives = 97/244 (39%), Gaps = 26/244 (10%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETF--TR 761
L+G+ RPG L G G+GK+TLM +L+G G G I SG P T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 762 ISGYC--EQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 819
+G Q P ++V E++ L +E+ M M L N LR+
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIF------LGNEITLPGGRMAYNA-MYLRAKNLLRE-- 127
Query: 820 VGLPGVN------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT 873
+ L N Q++ + IA L ++ +DEP+S L + +++ +R+
Sbjct: 128 LQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187
Query: 874 VDTGRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDGYNPATWMLEVTAPSQEIAL--GVDF 931
G V H+ A + IRDG + AT + + I + G +
Sbjct: 188 KAHGVACVYISHK-----LNEVKAVCDTICVIRDGQHVATKDMSTMSEDDIITMMVGREI 242
Query: 932 AAIY 935
++Y
Sbjct: 243 TSLY 246
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 7e-06
Identities = 51/179 (28%), Positives = 68/179 (37%), Gaps = 52/179 (29%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAA------YISQHDI 57
LLGP G+GK+T+ L G + GK+T G E VP R + Q D
Sbjct: 35 LLGPNGAGKSTIARMLLGMISPD---RGKITVLG----EPVPSRARLARVAIGVVPQFDN 87
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
E TVRE L R G +S RE A I
Sbjct: 88 LDPEFTVRENLLVFGRYFG----------MSTREIEAVIPS------------------- 118
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
+L+ L+ AD V +SGG ++R+T L+ L +DE +TGLD
Sbjct: 119 -----LLEFARLESKADVRVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 7e-06
Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 45/225 (20%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
LLGP G+GKTT + + G + L SG+V ++G + + + Y+ + +M
Sbjct: 31 LLGPNGAGKTTTIRMILGII---LPDSGEVLFDGKPL-DIAARNRIGYLPEERGLYPKMK 86
Query: 64 VRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYI 123
V + L + A+ +G L + E +I D
Sbjct: 87 VIDQLVYLAQLKG----------LKKEEARRRI------------------------DEW 112
Query: 124 LKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHI 183
L+ L+L A+ V +E+ S G +++V ++ L +DE +GLD +
Sbjct: 113 LERLELSEYANKRV-EEL----SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELL 167
Query: 184 VNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
+ + + G +I V L D ++L++ G+ V G
Sbjct: 168 KDVIRELAR--AGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 7e-06
Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 44/226 (19%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEM 62
++GP G+GK+TL+ +AG ++ ASG + N P QR + + Q + +
Sbjct: 29 IMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL 85
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
TVR+ + G+G + + ++EK I ++
Sbjct: 86 TVRQNI-------GLGLHPGLKLNAEQQEKVVDAAQQVGIADYL---------------- 122
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 182
D + +SGGQR+RV LV P L +DE + LD
Sbjct: 123 ----------------DRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREE 166
Query: 183 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
++ + Q T L+ + + + I +VS G+I
Sbjct: 167 MLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 7e-06
Identities = 46/212 (21%), Positives = 82/212 (38%), Gaps = 52/212 (24%)
Query: 683 YSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY 742
Y+ D+P +L VS + G ++G TG+GK+TL +LA +
Sbjct: 16 YAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEA 60
Query: 743 ITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESL--------LYSAWLRLSSEV 794
G I I G + P + SL L+S +R + +
Sbjct: 61 EEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDP 104
Query: 795 NSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 854
+ + + + + E G LS QR+ L +A L+ P ++ +DE
Sbjct: 105 FDEYSDEEIYGALRVSE------------GGLNLSQGQRQLLCLARALLKRPRVLVLDEA 152
Query: 855 TSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQ 886
T+ +D A++ +T+R T T++ H+
Sbjct: 153 TASIDYATDALIQKTIREEF-TNSTILTIAHR 183
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 7e-06
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 28/188 (14%)
Query: 714 GVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHS 773
G LT ++G G GK++L+ + G + G + S +++ +F E +
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSF-------EATRSRN 77
Query: 774 PYVTVYESLLYSAWLRLSSEVN---------SKTREMFVEEVMEL---VELNPL-RQALV 820
Y Y + WL L++ V +K R V + L ++L P Q +
Sbjct: 78 RYSVAYAA--QKPWL-LNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEI 134
Query: 821 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT--VRNTVDTGR 878
G G+N LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D R
Sbjct: 135 GERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKR 193
Query: 879 TVVCTIHQ 886
T+V H+
Sbjct: 194 TLVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 7e-06
Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 37/183 (20%)
Query: 694 RGVH---DDKLVL----LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGN 746
RG+ D K V+ L +G F LT L+G +G GKTT++ ++AG +T +G
Sbjct: 18 RGISKSFDGKEVISNLDLTINNGEF----LT-LLGPSGCGKTTVLRLIAGFETPD--SGR 70
Query: 747 ITISGYPKNQETFTRISGYCEQNDIHS--------PYVTVYESLLYSAWLRLSSEVNSKT 798
I + G + T + E +++ P++TV+E++ + LR+ ++
Sbjct: 71 IMLDG-----QDITHVPA--ENRHVNTVFQSYALFPHMTVFENVAFG--LRMQKTPAAEI 121
Query: 799 REMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858
V E + +V+L Q + LS Q++R+ IA +V P ++ +DE S L
Sbjct: 122 TPR-VMEALRMVQLEEFAQR-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSAL 175
Query: 859 DAR 861
D +
Sbjct: 176 DYK 178
|
Length = 375 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 7e-06
Identities = 65/252 (25%), Positives = 105/252 (41%), Gaps = 45/252 (17%)
Query: 651 QSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGA 710
++ + ++P + LP ++ F IT+ + +GV D VS
Sbjct: 311 DLEDSVFQREEPADAPE-LPNVKGAVEFRHITF--EFAN--SSQGVFD--------VSFE 357
Query: 711 FRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQND 770
+ G A++G TG+GKTTL+++L ++ G I I G + T TR
Sbjct: 358 AKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGI--DINTVTR-------ES 406
Query: 771 IHSPYVTVYESL-LYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ----------AL 819
+ TV++ L++ +R + + + EEV E + L
Sbjct: 407 LRKSIATVFQDAGLFNRSIRENIRLGREGATD--EEVYEAAKAAAAHDFILKRSNGYDTL 464
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT--- 876
VG G N LS +R+RL IA ++ N I+ +DE TS LD A V+N +D
Sbjct: 465 VGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RVKNAIDALRK 519
Query: 877 GRTVVCTIHQPS 888
RT H+ S
Sbjct: 520 NRTTFIIAHRLS 531
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 8e-06
Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 33/179 (18%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
L+G G+GK+TL+ LAG+L+ SG+VT Y+SQ E T
Sbjct: 34 LVGRNGAGKSTLLKILAGELEPD---SGEVTRP--------KGLRVGYLSQEPPLDPEKT 82
Query: 64 VRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQ------EAN 117
V + + +G G ++L EL E+A ++ D D ++ + + EA
Sbjct: 83 VLDYVI-----EGFGELRELLAEL---EEAYALLADPDDELLAELEALLEELDGWTLEAR 134
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
L L D V +SGG R+RV L+ L +DE + LD
Sbjct: 135 AEE--ALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 8e-06
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 707 VSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRISG 764
VS R G A++G GSGK+TL +LAG T G I N + RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 765 -YCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 823
+ + N +P + + + LRL++++ + R + E + +V L P
Sbjct: 92 IFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860
+ L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 8e-06
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 27/152 (17%)
Query: 717 TALMGVTGSGKTTLMDVLAG--RKTRGYITGNITI-----SG--YPKNQETFTRISGYCE 767
TA+ G +G+GKT+L++ ++G R +G I N + G P + RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR---RI-GYVF 82
Query: 768 QNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 827
Q+ P+ V +L Y + F ++++ L+ + PL L PG
Sbjct: 83 QDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYPG--S 128
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-06
Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 43/180 (23%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYIS--QHDIHIGE 61
L+G GSGK+T+ +AG SG++ ++G E + A ++ DI + E
Sbjct: 510 LVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFE 566
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADI-DVFMKAVVREGQ-EANVI 119
TVR+ L +D + + +A K DA I DV R G +A +
Sbjct: 567 GTVRDNLTL----------WDPTIPDADLVRACK---DAAIHDVITS---RPGGYDAELA 610
Query: 120 TDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 179
E +SGGQR+R+ LV L +DE ++ LD T
Sbjct: 611 --------------------EGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 9e-06
Identities = 60/242 (24%), Positives = 96/242 (39%), Gaps = 74/242 (30%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-----------VPQRTAAYI 52
LLG G GK+TL+ L D G++ NG + ++ V QR
Sbjct: 371 LLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQR----- 422
Query: 53 SQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVRE 112
+H+ T+R+ L +A P+A + ++ + +
Sbjct: 423 ----VHLFSATLRDNLLLAA-------------------------PNASDEALIEVLQQV 453
Query: 113 GQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 172
G E K+L+ D + +G E R +SGG+++R+ L+ A L +DE +
Sbjct: 454 GLE---------KLLEDDKGLNAWLG-EGGRQLSGGEQRRLGIARALLHDAPLLLLDEPT 503
Query: 173 TGLDSSTTFHIVNSLGQFNHILNGTA------LISLLQPAPEVYNLFDDIILVSDGQIVY 226
GLD+ T I+ L H N T L L Q FD I ++ +GQI+
Sbjct: 504 EGLDAETERQILELL--AEHAQNKTVLMITHRLTGLEQ--------FDRICVMDNGQIIE 553
Query: 227 QG 228
QG
Sbjct: 554 QG 555
|
Length = 574 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 25/155 (16%)
Query: 714 GVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDI-- 771
G + L+G +G GKTT++ ++AG + G I I G E T S +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG-----EDVTHRS--IQQRDICM 82
Query: 772 --HS----PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 825
S P++++ E++ Y L++ V + R+ V+E +ELV+L V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKMLG-VPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860
+ +S Q++R+ +A L+ P ++ DEP S LDA
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 9e-06
Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 43/185 (23%)
Query: 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ- 756
L+ +N V+ R + +L+G G+GKTT+ + L G + T G I I G P +Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 757 ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNS---KT--------- 798
TF + + E +TV E+LL + +L + + S KT
Sbjct: 78 ARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE 129
Query: 799 ---REMFVEEVMELVEL-NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 854
R E + L+E N RQA L+ Q++RL IA +V P I+ +DEP
Sbjct: 130 ALDRAATWLERVGLLEHAN--RQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEP 180
Query: 855 TSGLD 859
+GL+
Sbjct: 181 AAGLN 185
|
Length = 255 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 59/248 (23%), Positives = 93/248 (37%), Gaps = 63/248 (25%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLK-ASGKVTYNGHDMHE---------------FVPQR 47
++G GSGK+TL LAL G L + SG+V +G D+ + Q
Sbjct: 40 IVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQD 99
Query: 48 TAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMK 107
++ MT+ + + + R G GSR + R++A ++
Sbjct: 100 PMTSLN------PVMTIGDQIREALRLHGKGSRAE------ARKRAVEL----------- 136
Query: 108 AVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALF 167
L+ + L D D +SGG R+RV L L
Sbjct: 137 ----------------LEQVGLP---DPERRDRYPHQLSGGMRQRVMIAMALALKPKLLI 177
Query: 168 MDEISTGLDSSTTFHIVNSLGQFNHILNGTAL-ISLLQPAPEV-YNLFDDIILVSDGQIV 225
DE +T LD +T I++ L L L I+ V L D ++++ G+IV
Sbjct: 178 ADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD---LGVVAELADRVVVMYKGEIV 234
Query: 226 YQGPLEHV 233
GP E +
Sbjct: 235 ETGPTEEI 242
|
Length = 539 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 52/179 (29%), Positives = 71/179 (39%), Gaps = 52/179 (29%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAA------YISQHDI 57
LLGP G+GK+T+ + G +GK+T G VP R + Q D
Sbjct: 72 LLGPNGAGKSTIARMILGMTSPD---AGKITVLG----VPVPARARLARARIGVVPQFDN 124
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
E TVRE L V RY +S RE A +IP
Sbjct: 125 LDLEFTVRENLL-------VFGRY---FGMSTREIEA-VIPS------------------ 155
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
+L+ L+ AD V D +SGG ++R+T L+ L +DE +TGLD
Sbjct: 156 -----LLEFARLESKADARVSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 49/230 (21%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSL--KASGKVTYNGHDMHEFVP---QRTAAYISQHDIH 58
++G GSGK+TL KL +G+V +GHD+ P +R + Q ++
Sbjct: 33 IVGRSGSGKSTL-----TKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVL 87
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANV 118
++R+ +A + D + + R +AAK+ A F+ + EG
Sbjct: 88 FNR-SIRDNIALA----------DPGMSMERVIEAAKL---AGAHDFISEL-PEGY---- 128
Query: 119 ITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS 178
DT+VG E G+SGGQR+R+ L+ L DE ++ LD
Sbjct: 129 ---------------DTIVG-EQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYE 172
Query: 179 TTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
+ I+ ++ + I G +I + V N D II++ G+IV QG
Sbjct: 173 SEHAIMRNM---HDICAGRTVIIIAHRLSTVKNA-DRIIVMEKGRIVEQG 218
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 53/249 (21%), Positives = 89/249 (35%), Gaps = 62/249 (24%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAA----YISQH---D 56
++G GSGK+TL LAG S SG + +G + + + Q
Sbjct: 38 IVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSS 94
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
++ TV L+ R G+ K+ + I + + V G
Sbjct: 95 LN-PRRTVGRILSEPLRPHGLS-------------KSQQRIAEL-----LDQV---GLPP 132
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
+ + ++ SGGQR+R+ L+ L +DE ++ LD
Sbjct: 133 SFLDRRPHEL-------------------SGGQRQRIAIARALIPEPKLLILDEPTSALD 173
Query: 177 SSTTFHIVNSLGQFNHILNGTAL-----ISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231
S I+N L + T L ++L V ++ D I ++ +GQIV GP E
Sbjct: 174 VSVQAQILNLLLELKKERGLTYLFISHDLAL------VEHMCDRIAVMDNGQIVEIGPTE 227
Query: 232 HVEQFFISM 240
+
Sbjct: 228 ELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 51/240 (21%), Positives = 97/240 (40%), Gaps = 59/240 (24%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNG---HDMHEFVPQRTAAYISQHDIHIG 60
++GP G+GKTTL+ L D G++ +G D+ + + Q D +
Sbjct: 34 IVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKSLRSMIGVVLQ-DTFLF 89
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
T+ E + P+A + V+ +EA
Sbjct: 90 SGTIMENIRLGR-------------------------PNATDEE----VIEAAKEAG-AH 119
Query: 121 DYILKVLDLDVCADTVVGDEMLRG--ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS 178
D+I+K L DTV+G+ G +S G+R+ + ++ L +DE ++ +D+
Sbjct: 120 DFIMK---LPNGYDTVLGE---NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTE 173
Query: 179 TTFHIVNSLGQFNHILNGTALI-----SLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
T I +L + T++I S ++ A D I+++ DG+I+ +G + +
Sbjct: 174 TEKLIQEALEKLMK--GRTSIIIAHRLSTIKNA-------DKILVLDDGKIIEEGTHDEL 224
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 25/207 (12%)
Query: 690 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITI 749
E++ D K V +S + G + G+ GSG+T LM+ L G R G I +
Sbjct: 267 EVRNVTSRDRKKV--RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRL 322
Query: 750 SG---YPKNQ-ETFTRISGYCEQNDIHSPY---------VTVYESLLYSAWLRLSSEVNS 796
+G P++ + + Y ++ + + + + SL + +
Sbjct: 323 NGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHE 382
Query: 797 KTREMFVEEVMELVEL--NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 854
+ E EL+ L + + Q + L G N Q+K L I+ L P +I DEP
Sbjct: 383 VDEQRTAENQRELLALKCHSVNQNITELSGGN-----QQKVL-ISKWLCCCPEVIIFDEP 436
Query: 855 TSGLDARAAAVVMRTVRNTVDTGRTVV 881
T G+D A A + + +R D G+ ++
Sbjct: 437 TRGIDVGAKAEIYKVMRQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 61/194 (31%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
L + + VL + GV+GSGK+TL
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTL--------------------------------- 37
Query: 764 GYCEQNDIHSPYVTVYESLLYSAWLRLSS--EVNSKTREMFVEEVMELVELN----PLRQ 817
V E L S RL S S+ + +F++++ L+++ L Q
Sbjct: 38 --------------VNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQ 83
Query: 818 ALVGLPGVNGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAVVMRTVRNTVD 875
L + LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D
Sbjct: 84 KL------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID 137
Query: 876 TGRTVVCTIHQPSI 889
G TV+ H +
Sbjct: 138 LGNTVILIEHNLDV 151
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 38/241 (15%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
L+ V+ RP + ALMG G+GK+TL+ L G + +G+I G + ++ S
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD--SGSILFQGKEIDFKS----S 67
Query: 764 GYCEQNDI---HSPYVTVYE-SLLYSAWLRLSSEVNSKTREMFVEE----------VMEL 809
+N I H V + S++ + WL T+ MFV++ EL
Sbjct: 68 KEALENGISMVHQELNLVLQRSVMDNMWLG-----RYPTKGMFVDQDKMYRDTKAIFDEL 122
Query: 810 -VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR 868
++++P + V LS Q + + IA N I+ MDEPTS L + +
Sbjct: 123 DIDIDPRAK-------VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT 175
Query: 869 TVRNTVDTGRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDGYNPATWMLEVTAPSQEIALG 928
+R + G +V H+ +IF+ D ++ +RDG AT L + IA+
Sbjct: 176 IIRKLKERGCGIVYISHKME-EIFQLCDE----ITILRDGQWIATQPLAGLTMDKIIAMM 230
Query: 929 V 929
V
Sbjct: 231 V 231
|
Length = 491 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 60/235 (25%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQHDIHIG 60
L+GP G+GKT+L+ AL G L G + NG ++ E P+ + +++ Q + +
Sbjct: 381 LVGPSGAGKTSLLNALLG----FLPYQGSLKINGIELRELDPESWRKHLSWVGQ-NPQLP 435
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
T+R+ + PDA + +A+ + A V
Sbjct: 436 HGTLRDNVLLGN-------------------------PDASDEQLQQAL----ENAWV-- 464
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
L +L + DT +GD+ G+S GQ +R+ L+ P L +DE + LD+ +
Sbjct: 465 SEFLPLLPQGL--DTPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSE 521
Query: 181 FHIVNSLGQFNHILNGTALI-------SLLQPAPEVYNLFDDIILVSDGQIVYQG 228
++ +L N + L Q +D I ++ DGQIV QG
Sbjct: 522 QLVMQAL---NAASRRQTTLMVTHQLEDLAQ--------WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 34/204 (16%)
Query: 697 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYPK 754
D K L ++ G AL+G +G+GKT+L++ L G ++ G++ I+G
Sbjct: 360 PDGK-TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIEL 413
Query: 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 811
+ E++ + + QN P+ T+ +++L N + E++ + +E
Sbjct: 414 RELDPESWRKHLSWVGQNP-QLPHGTLRDNVLLG---------NPDASD---EQLQQALE 460
Query: 812 LNPLRQALVGLP-GVN--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 862
+ + L LP G++ GLS Q +RL +A L+ ++ +DEPT+ LDA +
Sbjct: 461 NAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520
Query: 863 AAVVMRTVRNTVDTGRTVVCTIHQ 886
+VM+ + N +T + HQ
Sbjct: 521 EQLVMQAL-NAASRRQTTLMVTHQ 543
|
Length = 588 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 23/189 (12%)
Query: 690 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITI 749
E K +L +S F G + ++G +G+GK+TL+ ++ + G+I I
Sbjct: 5 EFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILI 62
Query: 750 SGYP-KNQET--FTRISGYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFV 803
G K + R G Q P++ TV +++ Y L+ V+ V
Sbjct: 63 DGVDIKTIDVIDLRRKIGMVFQQ----PHLFEGTVKDNIEYGPMLKGEKNVD-------V 111
Query: 804 EEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 863
E + +V LN V LS + +R++IA L NP ++ +DEPTS LD +
Sbjct: 112 EYYLSIVGLN----KEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTST 167
Query: 864 AVVMRTVRN 872
++ +
Sbjct: 168 EIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 42/178 (23%), Positives = 62/178 (34%), Gaps = 47/178 (26%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIH 58
+ GP G+GKTTL+ LAG L +G+V + G + + Y+
Sbjct: 30 ALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESYHQALLYLGHQPGI 86
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANV 118
E+T E L F R G G+ + E A + A +
Sbjct: 87 KTELTALENLHFWQRFHGSGNA-ATIWE------ALAQVGLAGL---------------- 123
Query: 119 ITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
DL V +S GQ++RV + + PA +DE T LD
Sbjct: 124 --------EDLPV-----------GQLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 44/167 (26%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
+LGP G GK+TL+ +AG + SG+V +G + P Y+ Q D + +T
Sbjct: 34 ILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGPDI--GYVFQEDALLPWLT 88
Query: 64 VRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYI 123
V + +A +G RE+A +++ + F +
Sbjct: 89 VLDNVALGLELRGKSKA-------EARERAKELLELVGLAGFEDKYPHQ----------- 130
Query: 124 LKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 170
+SGG R+RV L L +DE
Sbjct: 131 ---------------------LSGGMRQRVAIARALATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 32/162 (19%), Positives = 51/162 (31%), Gaps = 50/162 (30%)
Query: 13 TTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTA----AYISQHDIHIGEMTVRETL 68
+TL+ + G L SG + +G D ++ + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQ---PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 69 AFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLD 128
F R+K A + L+
Sbjct: 58 FF-----------------GLRDKEAD-------------------------ARAEEALE 75
Query: 129 LDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 170
V + E + +SGGQ++RV L+ L +DE
Sbjct: 76 -RVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 19/199 (9%)
Query: 690 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GN 746
+ H K+ L+ VS G + L+G G+GKTTL+ L G R T G I
Sbjct: 7 SFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDG 66
Query: 747 ITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEV 806
I+ + + ++ E + S +TV E+L + R+ F E +
Sbjct: 67 KDITDWQTAKIMREAVAIVPEGRRVFS-RMTVEENLAMGGFF--------AERDQFQERI 117
Query: 807 MELVELNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 865
+ EL P L + + G +S +++ L I L++ P ++ +DEP+ GL A +
Sbjct: 118 KWVYELFPRLHERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----API 171
Query: 866 VMRTVRNTVDTGRTVVCTI 884
+++ + +T++ R TI
Sbjct: 172 IIQQIFDTIEQLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 47/173 (27%), Positives = 68/173 (39%), Gaps = 47/173 (27%)
Query: 690 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNI 747
+ + + ++GVS + + G L+G +G GK+TL ++ G T G I
Sbjct: 15 PVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG----EI 70
Query: 748 TISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVM 807
G DI +LS E + RE V E++
Sbjct: 71 LFEG-----------------KDIT----------------KLSKE---ERRER-VLELL 93
Query: 808 ELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860
E V L + L P + LS QR+R+ IA L NP +I DEP S LD
Sbjct: 94 EKVGLPE--EFLYRYP--HELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 3e-05
Identities = 56/268 (20%), Positives = 111/268 (41%), Gaps = 33/268 (12%)
Query: 988 RNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQ 1047
++ + +R I +L+ G M+W + +D+ + +G ++ F GV +
Sbjct: 404 KHESFNTLRVFQVIAAALLAGLMWWH-----SDFRDVQDRLGLLFFISIFWGVFPSFNSV 458
Query: 1048 PVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKF 1107
V ER++F +E+ +GMY+ +Y A+++ ++P + + + Y M G + F
Sbjct: 459 FVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAF 518
Query: 1108 FWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWR 1167
L + +L G+ L A + AS + T+ + + GF + ++P
Sbjct: 519 LLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYV--HKLPSCMA 576
Query: 1168 WSYWANPIAWTLYGF---FASQFGDVQDRLESGETVKQFL---------RSYYGF-KHDF 1214
W + I+ T Y + Q+G G+ + L R+ F + D
Sbjct: 577 WIKY---ISTTFYSYRLLINVQYG-------EGKRISSLLGCSLPHGSDRASCKFVEEDV 626
Query: 1215 LGAVAAVVFVLPSLFAFVFALGIRVLNF 1242
G ++ V +F FV G R+L +
Sbjct: 627 AGQISPATSVSVLIFMFV---GYRLLAY 651
|
Length = 659 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 43/174 (24%), Positives = 67/174 (38%), Gaps = 43/174 (24%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEM 62
LLGP G GKTTL+ +AG + SG++ +G D+ P +R + Q+ +
Sbjct: 31 LLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHL 87
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
TV E +AF R + + + +E+ A+ + V EG
Sbjct: 88 TVFENIAFGLRLKKLP-------KAEIKERVAEA---------LDLVQLEGYA------- 124
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
+ +SGGQ++RV LV L +DE LD
Sbjct: 125 ----------------NRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 44/180 (24%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
+LGP G GKTTL+ +AG + S G + NG + P + Q++ + +
Sbjct: 36 VLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGAERGVVFQNEALLPWLN 90
Query: 64 VRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYI 123
V + +AF + +G+ RRE A + + V EG E
Sbjct: 91 VIDNVAFGLQLRGIEKA-------QRREIAHQ---------MLALVGLEGAE-------- 126
Query: 124 LKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHI 183
+ + +SGG R+RV L L +DE LD+ T +
Sbjct: 127 ---------------HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM 171
|
Length = 259 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 38/178 (21%), Positives = 64/178 (35%), Gaps = 45/178 (25%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP--QRTAAYISQHDIHIGE 61
L+GP G GK+TL+ + G L +G++ N + + +P QR + Q +
Sbjct: 33 LMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL-DMLPAAQRQIGILFQDALLFPH 91
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
++V + L F+ + A ++ N
Sbjct: 92 LSVGQNLLFA----------------------------------LPATLKGNARRNAANA 117
Query: 122 YILKV-LDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS 178
+ + LD D +SGGQR RV L+ AL +DE + LD +
Sbjct: 118 ALERSGLDGAFHQDPAT-------LSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 50/231 (21%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEM 62
+LGP G+GK+TL+ +AG ASG++ NG D P +R + + Q + +
Sbjct: 30 ILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTASPPAERPVSMLFQENNLFAHL 86
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
TV + + G + + +REK + F+K + E
Sbjct: 87 TVAQNIGL-------GLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGE---------- 129
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS---T 179
+SGGQR+RV LV L +DE + LD +
Sbjct: 130 ----------------------LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE 167
Query: 180 TFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230
+V+ L L+ + + + D ++ + +G+I QG
Sbjct: 168 MLALVSQL----CDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 48/228 (21%), Positives = 85/228 (37%), Gaps = 44/228 (19%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDM-HEFVPQRTAAYISQHDIHIG 60
T ++GP GSGK+TL+ +AG SG+V NG D+ R + + Q +
Sbjct: 27 TAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFA 83
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
+TV + + G+ + E R+ + + K + E
Sbjct: 84 HLTVEQNVGL-----GLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLPGE-------- 128
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
+SGG+R+RV +LV L +DE LD +
Sbjct: 129 ------------------------LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
+++ + + T L+ QP + L ++ + +G+I QG
Sbjct: 165 AEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 58/237 (24%), Positives = 91/237 (38%), Gaps = 49/237 (20%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGE 61
T ++G GSGK+TL L G + SG++ NG + D H
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFS------------LKDIDRHTLR 547
Query: 62 MTV----RETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+ +E FS GS + L+ ++ + D A E
Sbjct: 548 QFINYLPQEPYIFS------GSILENLLLGAK--------ENVSQDEIWAAC-----EIA 588
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
I D I + + T + +E ISGGQ++R+ L+ + L +DE ++ LD+
Sbjct: 589 EIKDDIEN---MPLGYQTELSEEG-SSISGGQKQRIALARALLTDSKVLILDESTSNLDT 644
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234
T IVN+L I + V D II++ G+I+ QG H E
Sbjct: 645 ITEKKIVNNLLNLQD-----KTIIFVAHRLSVAKQSDKIIVLDHGKIIEQG--SHDE 694
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 24/191 (12%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFT 760
L +SG R G + L+G G+GK+TL+ +AG + +G+I +G P
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQPLEAWSATELA 71
Query: 761 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-NPLRQAL 819
R Y Q +P W L+ KTR + +V + L + L ++
Sbjct: 72 RHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRST 123
Query: 820 VGLPGVNGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDARAAAVVMRTVRNTV 874
L G QR RL + + ANP+ ++ +DEP + LD + + R +
Sbjct: 124 NQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179
Query: 875 DTGRTVVCTIH 885
G +V + H
Sbjct: 180 QQGLAIVMSSH 190
|
Length = 248 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 50/191 (26%), Positives = 74/191 (38%), Gaps = 66/191 (34%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG--YITG-NITISG------- 751
L+ V+ G L+G TGSGK+TL+ L G + T G I G +IT
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 752 --------YPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTR 799
YP+ Q ET + + N L LS E+ ++
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPIN------------------LGLSEEEIENR-- 122
Query: 800 EMFVEEVMELVELN--------PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 851
V+ M +V L+ P LS Q++R+ IA + P I+ +
Sbjct: 123 ---VKRAMNIVGLDYEDYKDKSPFE-----------LSGGQKRRVAIAGVVAMEPKILIL 168
Query: 852 DEPTSGLDARA 862
DEPT+GLD +
Sbjct: 169 DEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 3e-05
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 145 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQ 204
+SGGQ++RV L L DE ++ LD +TT I+ L + N L T L+ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL-ITH 199
Query: 205 PAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQE 264
V + D + ++S+G+++ QG + + F PK F++ E
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQGTVSEI--------FSHPKTPLAQKFIRSTLHLSIPE 251
Query: 265 QYWVR 269
Y R
Sbjct: 252 DYQER 256
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-05
Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 45/231 (19%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHD---MHEFVPQRTAAYISQHDI 57
++GP GSGK+TL+ L D + SG++ +G D + ++ +SQ D
Sbjct: 357 KVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQ-DP 412
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+ T+RE +A G E+ E+A K+ A+ F
Sbjct: 413 LLFSGTIRENIAL-------GRPDATDEEI---EEALKL---ANAHEF------------ 447
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
+ +L DT+VG E +SGGQR+R+ L+ L +DE ++ LD+
Sbjct: 448 --------IANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
T I ++L + T LI + + D II++ +G+IV +G
Sbjct: 499 ETEALIQDALKKLLK--GRTTLIIAHRLS--TIKNADRIIVLDNGRIVERG 545
|
Length = 567 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 4e-05
Identities = 53/233 (22%), Positives = 91/233 (39%), Gaps = 43/233 (18%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
L+GP G+GKTTL+ A+ G L +G V G D+ +A S+ + + T
Sbjct: 34 LVGPNGAGKTTLLRAINGTLTP---TAGTVLVAGDDVE----ALSARAASRRVASVPQDT 86
Query: 64 VRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYI 123
+L+F + V VE+ R ++ + D +A V E + +
Sbjct: 87 ---SLSFEFDVRQV-------VEMGRTPHRSRFDTWTETD---RAAVERAMERTGVAQFA 133
Query: 124 LKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD---SSTT 180
D + +SGG+R+RV L L +DE + LD T
Sbjct: 134 ---------------DRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRT 178
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
+V L +G ++ + D+++L++DG++ GP V
Sbjct: 179 LELVRRLVD-----DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226
|
Length = 402 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-05
Identities = 75/337 (22%), Positives = 129/337 (38%), Gaps = 72/337 (21%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTA----AYISQHDIHI 59
LLG G+GK+TLM L+G + + G +T N + ++ + A I Q I
Sbjct: 36 LLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVI 92
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVI 119
E+TV E L + R L+++ + + +E V
Sbjct: 93 DELTVLENL-YIGR------------HLTKK--------------VCGVNIIDWREMRVR 125
Query: 120 TDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 179
+L + L V D V + +S ++ + + L+ A + MDE ++ L +
Sbjct: 126 AAMMLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKE 180
Query: 180 T---FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE-Q 235
F I+N L + GTA++ + E+ + D ++ DG V G + V
Sbjct: 181 VDYLFLIMNQLRK-----EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSND 235
Query: 236 FFISMGF-KCPKRKGIADFLQEVTSRKDQEQ-YWVRNDEPYRFVTVKEFVHAFQSFHVGR 293
+ + + + + A ++E S E + VRN V++ SF V R
Sbjct: 236 DIVRLMVGRELQNRFNA--MKENVSNLAHETVFEVRNVTSRDRKKVRDI-----SFSVCR 288
Query: 294 KLGDELGIPFDKKNSHPAALTTRKYGVGKKELLKACF 330
G+ LG A L G G+ EL+ F
Sbjct: 289 --GEILGF---------AGLV----GSGRTELMNCLF 310
|
Length = 510 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 42/186 (22%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISG---YP 753
L +S +TA +G +G GK+TL+ D++ + I G I + G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 754 KNQE--TFTRISGYCEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTREMFVE------ 804
K + R G Q +P+ ++YE+++Y LRL N + + VE
Sbjct: 97 KKVDVAELRRRVGMVFQRP--NPFPKSIYENVVYG--LRLQGINNRRVLDEAVERSLRGA 152
Query: 805 ----EVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860
EV + + N GLS Q++RL IA + P ++ +DEPTS LD
Sbjct: 153 ALWDEVKDRLHENAF-----------GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP 201
Query: 861 RAAAVV 866
+ +
Sbjct: 202 ISTLKI 207
|
Length = 272 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 30/193 (15%)
Query: 707 VSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFT-----R 761
+S R G + L+G G+GK+TL+ +AG G +G+I +G + E ++ R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPG--SGSIQFAG--QPLEAWSAAELAR 69
Query: 762 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG 821
Y Q + V++ L L + ++ + EV E + L+
Sbjct: 70 HRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDK------ 119
Query: 822 LP-GVNGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTSGLDARAAAVVMRTVRN 872
L VN LS E QR RL AV L NP+ ++ +DEP + LD A + R +
Sbjct: 120 LGRSVNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE 178
Query: 873 TVDTGRTVVCTIH 885
G VV + H
Sbjct: 179 LCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 57/213 (26%), Positives = 88/213 (41%), Gaps = 35/213 (16%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG-RKTRGYITGNITISGYPKNQ 756
+ + L VS G A++G GSGK+T+ +L G K + G I I G ++
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS---GEIKIDGITISK 75
Query: 757 ETFTRIS---GYCEQN-DIHSPYVTVYESLLYSAWL---RLSSEVNSKTREMFVEEV-ME 808
E I G QN D TV + + + L ++ + + ++V ME
Sbjct: 76 ENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG--LENKKVPPKKMKDIIDDLAKKVGME 133
Query: 809 -LVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV- 866
++ P LS Q++R+ IA L NP II DE TS LD + +
Sbjct: 134 DYLDKEPQN-----------LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK 182
Query: 867 --MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897
M +R T +T++ H D+ EA A
Sbjct: 183 KIMVDLRKTRK--KTLISITH----DMDEAILA 209
|
Length = 271 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-05
Identities = 55/206 (26%), Positives = 79/206 (38%), Gaps = 59/206 (28%)
Query: 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTR 761
VLL VS + G LT ++G TGSGK+TL+ L
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS------------------------- 708
Query: 762 ISGYCEQNDIHSPYVTVYESLLY---SAWLRLSSEVNSKTRE---MFVEE----VMELVE 811
Q +I V S+ Y AW+ +N+ R F EE + + V
Sbjct: 709 ------QFEISEGRVWAERSIAYVPQQAWI-----MNATVRGNILFFDEEDAARLADAVR 757
Query: 812 LNPLRQALVGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDA 860
++ L L L G GL TE Q+ R+++A + AN + +D+P S LDA
Sbjct: 758 VSQLEADLAQLGG--GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815
Query: 861 RAAAVVMRTVRNTVDTGRTVVCTIHQ 886
V+ G+T V HQ
Sbjct: 816 HVGERVVEECFLGALAGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 5e-05
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 753
L+GVS + R G + AL+G G+GK+TLM +L+G +G I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD--SGEILVDGKE 63
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-05
Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 58/237 (24%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHI- 59
M LLGP G GKTT++ +AG L+ G++ +G D+ T I Q DI +
Sbjct: 34 MVTLLGPSGCGKTTVLRLVAG-LEKP--TEGQIFIDGEDV-------THRSIQQRDICMV 83
Query: 60 -------GEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVRE 112
M++ E + + + GV E +R K A
Sbjct: 84 FQSYALFPHMSLGENVGYGLKMLGVPKE-----ERKQRVKEA------------------ 120
Query: 113 GQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 172
L+++DL D V D+ ISGGQ++RV L+ L DE
Sbjct: 121 -----------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARALILKPKVLLFDEPL 164
Query: 173 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 229
+ LD++ + + + N T+L + E + + D +I+++ G+I+ G
Sbjct: 165 SNLDANLRRSMREKIRELQQQFNITSLY-VTHDQSEAFAVSDTVIVMNKGKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 30/187 (16%)
Query: 690 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGY 742
E++ + D +L V+ +TAL+G +G GK+T + D++ G + G
Sbjct: 5 EVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEG- 63
Query: 743 ITGNITISG---YPKNQET--FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSK 797
+I + G Y + + G Q P ++++++ Y LR+ E +
Sbjct: 64 ---HIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYG--LRIHGEDDED 117
Query: 798 TREMFVEEVMELVEL-----NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 852
E VEE ++ L + L ++ +GL G Q++RL IA + +P +I MD
Sbjct: 118 FIEERVEESLKAAALWDEVKDKLDKSALGLSG------GQQQRLCIARTIAVSPEVILMD 171
Query: 853 EPTSGLD 859
EP S LD
Sbjct: 172 EPCSALD 178
|
Length = 250 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 5e-05
Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 29/205 (14%)
Query: 683 YSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTR 740
SVD RGV + ++ VS + G + ++G +G+GKTTL ++AG T
Sbjct: 290 ISVD-------RGV----VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS 338
Query: 741 GYI---TG----NITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSE 793
G + G ++T G P + R G Q P+ TV ++L + L L E
Sbjct: 339 GEVNVRVGDEWVDMTKPG-PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE 397
Query: 794 VNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 853
+ ++ + + +++ E + L P + LS +R R+ +A L+ P I+ +DE
Sbjct: 398 L-ARMKAVITLKMVGFDE-EKAEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDE 453
Query: 854 PTSGLDARAAAVVMRTVRNTVDTGR 878
PT +D + V +++ R
Sbjct: 454 PTGTMD----PITKVDVTHSILKAR 474
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 6e-05
Identities = 49/237 (20%), Positives = 88/237 (37%), Gaps = 44/237 (18%)
Query: 4 LLGPPGSGKTTLMLAL--AGKLDSSLKASGKVTYNGHDMHE-----FVPQRTAAYISQHD 56
L+GP G GKTT + A+ L + +G++ +G D++ +R + Q
Sbjct: 35 LIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP 94
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
M+V + + + G+ R D L+E++ R + D D R A
Sbjct: 95 NPFPTMSVFDNVVAGLKLAGIRDR-DHLMEVAERSLRGAALWDEVKD-------RLKTPA 146
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
G+SGGQ++R+ L L MDE ++ LD
Sbjct: 147 T--------------------------GLSGGQQQRLCIARALAVEPEILLMDEPTSALD 180
Query: 177 SSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
++T I + + + T +I + + + D G +V GP + +
Sbjct: 181 PASTARIEDLMTDLKKV---TTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234
|
Length = 252 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 23/178 (12%)
Query: 713 PGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIH 772
G + G G+GKTTL+ VLAG +G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 773 SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG-----VNG 827
++ E+L + L + ++M + L A+VGL G V
Sbjct: 94 KADLSTLENLHFLCGLH-----GRRAKQM---------PGSAL--AIVGLAGYEDTLVRQ 137
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 885
LS Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 138 LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 885
+ LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 886 QPSI 889
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 45/184 (24%), Positives = 65/184 (35%), Gaps = 62/184 (33%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRT------AAYISQHDI 57
LLGP G+GKTT + L G + +G ++ G E VP R + Q D
Sbjct: 38 LLGPNGAGKTTTLRMLLG---LTHPDAGSISLCG----EPVPSRARHARQRVGVVPQFDN 90
Query: 58 HIGEMTVRETLAFSARCQGVGS-----RYDMLVELSRREKAAKIIPDADIDVFMKAVVRE 112
+ TVRE L R G+ + L+E ++ E A
Sbjct: 91 LDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA------------------ 132
Query: 113 GQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 172
D + +SGG ++R+T LV L +DE +
Sbjct: 133 --------------------------DAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT 166
Query: 173 TGLD 176
TGLD
Sbjct: 167 TGLD 170
|
Length = 306 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 7e-05
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 9/172 (5%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFT 760
+LN +S G + AL+G +GSGKTTL+ ++AG +T G+I + T ++
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 761 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 820
R G+ Q+ ++TV++++ + L + +V +L+E+ L
Sbjct: 74 RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD 131
Query: 821 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 872
P LS Q++R+ +A L P I+ +DEP LDA+ + R +R
Sbjct: 132 RYPA--QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQ 181
|
Length = 353 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 61/213 (28%)
Query: 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 735
L+ + +++S ++ VL +S + G AL+G +GSGK+TL+ +L
Sbjct: 1 LSINNVSFSYP----------EQEQQVL-KNLSLELKQGEKIALLGRSGSGKSTLLQLLT 49
Query: 736 GR-KTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVY--ESLLYSAWLRLSS 792
G K + G IT+ G P +S + S ++V L+ LR +
Sbjct: 50 GDLKPQ---QGEITLDGVP--------VSDLEKA---LSSLISVLNQRPYLFDTTLRNN- 94
Query: 793 EVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 852
+G S +R+RL +A L+ + I+ +D
Sbjct: 95 ---------------------------LGRR----FSGGERQRLALARILLQDAPIVLLD 123
Query: 853 EPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 885
EPT GLD ++ + V +T++ H
Sbjct: 124 EPTVGLDPITERQLLSLIFE-VLKDKTLIWITH 155
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-05
Identities = 65/260 (25%), Positives = 106/260 (40%), Gaps = 67/260 (25%)
Query: 691 MKR-RGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITI 749
M R V K +L +S +F PG ++G+ G+GK+TL+ ++AG
Sbjct: 7 MNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--------F 58
Query: 750 SGYPKNQETFTRISGYCEQNDIHSPYVTVYESL------LYSAWLRLSSEVNSK----TR 799
+G + GY Q P TV E++ + A R +E+++K
Sbjct: 59 NGEARPAPGIKV--GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRF-NEISAKFAEPDA 115
Query: 800 EM--FVEEVMELVEL----------NPLRQALVGL---PG---VNGLSTEQRKRLTIAVE 841
+M + E EL E+ L A+ L P V LS +R+R+ +
Sbjct: 116 DMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRL 175
Query: 842 LVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAGIPG 901
L++ P ++ +DEPT+ LDA + A + + ++ G TVV H
Sbjct: 176 LLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PG-TVVAVTH---------------- 216
Query: 902 VSKIRDGY---NPATWMLEV 918
D Y N A W+LE+
Sbjct: 217 -----DRYFLDNVAGWILEL 231
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 8e-05
Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 49/204 (24%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
+ VS R G + + G+ G+G+T L L G R +G I + G
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGA--RPASSGEILLDG------------ 320
Query: 764 GYCEQNDIHSP---------YVT-------------VYESLLYSAWLRLSSE--VNSKTR 799
+ I SP YV + E++ ++ R S ++ +
Sbjct: 321 ---KPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKE 377
Query: 800 EMFVEEVMELVELNP--LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 857
E + + + Q + L G N Q+K + +A L +P ++ +DEPT G
Sbjct: 378 RALAERYIRRLRIKTPSPEQPIGTLSGGN-----QQK-VVLARWLATDPKVLILDEPTRG 431
Query: 858 LDARAAAVVMRTVRNTVDTGRTVV 881
+D A A + R +R G+ ++
Sbjct: 432 IDVGAKAEIYRLIRELAAEGKAIL 455
|
Length = 500 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 9e-05
Identities = 56/235 (23%), Positives = 94/235 (40%), Gaps = 48/235 (20%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQHDIHIG 60
++GP GSGK+TL + G SG V +G D+ ++ + + Y+ Q D+ +
Sbjct: 349 IIGPSGSGKSTLARLIVG---IWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ-DVELF 404
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
TV E +A R+ + KII EA +
Sbjct: 405 PGTVAENIA----------RFGENAD------PEKII-----------------EAAKLA 431
Query: 121 DYILKVLDLDVCADTVVGDEMLRGI--SGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS 178
+L L DTV+G G SGGQR+R+ L G + +DE ++ LD
Sbjct: 432 GVHELILRLPDGYDTVIGP---GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEE 488
Query: 179 TTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
+ N++ T ++ +P+ + D I+++ DG+I G + V
Sbjct: 489 GEQALANAIKALK-ARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEV 540
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 9e-05
Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 30/202 (14%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG-RKTRGYITGNITISGYPKNQ 756
+ + VS R G + + GV G+G++ L++ ++G RK G I ++G
Sbjct: 268 RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS---GRILLNGKDVLG 324
Query: 757 ETFTRIS-----GYCEQNDIH---SPYVTVYESLL--------YSAWLRLS-SEVNSKTR 799
R Y ++ +++ E+L+ +S L + R
Sbjct: 325 RLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR 384
Query: 800 EMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
E+ +EE ++ +P A LS +++L +A EL P ++ +PT GLD
Sbjct: 385 EL-IEE-FDVRAPSPDAPA-------RSLSGGNQQKLILARELARRPDLLIAAQPTRGLD 435
Query: 860 ARAAAVVMRTVRNTVDTGRTVV 881
A + + D G+ V+
Sbjct: 436 VGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 9e-05
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 30/173 (17%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVL-------AGRKTRGYITGNITISGYPKNQ 756
L ++ + +TA++G +G GK+T + L K +TG + +G +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVK----LTGEMNYNGSNILK 83
Query: 757 ETFTRIS-----GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 811
+ G Q P ++++++ Y R+ N K + VE+ ++ V
Sbjct: 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVA 140
Query: 812 L-----NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
L + L + L G Q++RL IA L NP ++ MDEPTS LD
Sbjct: 141 LWDEVKDRLHTQALSLSG------GQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 9e-05
Identities = 56/209 (26%), Positives = 83/209 (39%), Gaps = 30/209 (14%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG-------RKTRGYITGNITIS 750
D K LN +S + G TAL+G GSGK+T+ ++ G ++ IT+
Sbjct: 17 DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSK------ITVD 70
Query: 751 GYPKNQETFTRIS---GYCEQN-DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEV 806
G +T I G QN D TV + + + R V V +V
Sbjct: 71 GITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDV 127
Query: 807 MELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
+ V + + LS Q++R+ IA L P II +DE TS LD +
Sbjct: 128 LADVGMLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQI 182
Query: 867 MRTVRN-TVDTGRTVVCTIHQPSIDIFEA 894
++ +R TV+ H DI EA
Sbjct: 183 LKLIRKLKKKNNLTVISITH----DIDEA 207
|
Length = 282 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 50/250 (20%), Positives = 87/250 (34%), Gaps = 69/250 (27%)
Query: 2 TLLLGPPGSGKTTLMLALAG--KLDSSLKASGKVTYNGHDMHE-------------FVPQ 46
T L+GP G GK+TL+ L L G+V +G D+++ V Q
Sbjct: 29 TALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQ 88
Query: 47 RTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFM 106
+ + ++ + +A+ R G + E +
Sbjct: 89 KPNPF---------PGSIYDNVAYGLRLHG---------IKLKEE--------------L 116
Query: 107 KAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHAL 166
V E L+ L D V G+SGGQ++R+ L L
Sbjct: 117 DERVEEA----------LRKAALW---DEVKDRLHALGLSGGQQQRLCLARALANEPEVL 163
Query: 167 FMDEISTGLDSSTTFHIVNSLGQFNHILNGTALI---SLLQPAPEVYNLFDDIILVSDGQ 223
+DE ++ LD +T I + + T +I ++ Q + D + +G+
Sbjct: 164 LLDEPTSALDPISTAKIEELIAELKK--EYTIVIVTHNMQQ----AARVADRTAFLLNGR 217
Query: 224 IVYQGPLEHV 233
+V GP E +
Sbjct: 218 LVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 1e-04
Identities = 58/257 (22%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ--RTAAYISQHDIHIGE 61
LLG G+GKTT L G D+++ SG T G + + + Y Q D
Sbjct: 1970 LLGVNGAGKTTTFKMLTG--DTTV-TSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDL 2026
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
+T RE L AR +GV + +E + +
Sbjct: 2027 LTGREHLYLYARLRGVPA----------------------------------EEIEKVAN 2052
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
+ ++ L L + AD + G SGG +++++T L+G + +DE +TG+D
Sbjct: 2053 WSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARR 2107
Query: 182 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFF---- 237
+ N++ + I G A++ E L + ++ G G ++H++ F
Sbjct: 2108 MLWNTI--VSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGY 2165
Query: 238 -ISMGFKCPKRKGIADF 253
++M K PK + D
Sbjct: 2166 IVTMKIKSPKDDLLPDL 2182
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 57/241 (23%), Positives = 94/241 (39%), Gaps = 56/241 (23%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHE-----FVP--QRTAAYISQ 54
T + G GSGKTTL+ +AG G++ NG + + F+P +R Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRP---DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82
Query: 55 HDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQ 114
++VR L RY M A
Sbjct: 83 EARLFPHLSVRGNL-----------RYGM--------------KRAR-----------PS 106
Query: 115 EANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 174
E + + ++++L + + G +SGG+++RV G L+ L MDE
Sbjct: 107 ERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAA 161
Query: 175 LDSSTTFHIVNSLGQFNHILNGTAL-IS-LLQPAPEVYNLFDDIILVSDGQIVYQGPLEH 232
LD + I+ L + + L +S LQ EV L D ++++ DG++ GP+
Sbjct: 162 LDDPRKYEILPYLERLHAEFGIPILYVSHSLQ---EVLRLADRVVVLEDGRVAAAGPIAE 218
Query: 233 V 233
V
Sbjct: 219 V 219
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 61/256 (23%), Positives = 99/256 (38%), Gaps = 54/256 (21%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ-RTAAYISQHDIHIGEM 62
LLGP G GKTTL+ +AG L+ + +G + G D+ PQ R + Q +
Sbjct: 35 LLGPSGCGKTTLLRIIAG-LE--RQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNL 91
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
TV + +A+ + +G+G R E A ++
Sbjct: 92 TVADNIAYGLKNRGMG----------RAEVAERV------------------------AE 117
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 182
+L ++ L + +SGGQ++RV L L +DE + LD+ H
Sbjct: 118 LLDLVGL-----PGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREH 172
Query: 183 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG-PLEHVEQFFISMG 241
+ + Q L T I + E ++ D I++++ G I G P E
Sbjct: 173 LRTEIRQLQRRLGVTT-IMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH------ 225
Query: 242 FKCPKRKGIADFLQEV 257
P +ADF+ EV
Sbjct: 226 ---PATPFVADFVGEV 238
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 57/248 (22%), Positives = 91/248 (36%), Gaps = 74/248 (29%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIH-IG-- 60
LLGP G+GK+TL+ + G L SG++ ++GH ++ D+H IG
Sbjct: 31 LLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPW------------TRKDLHKIGSL 75
Query: 61 --------EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVRE 112
+T RE L G+ PD+ I
Sbjct: 76 IESPPLYENLTARENLKVHTTLLGL--------------------PDSRI---------- 105
Query: 113 GQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 172
D +L ++DL S G ++R+ L+ L +DE +
Sbjct: 106 --------DEVLNIVDLTNTGKKKAKQ-----FSLGMKQRLGIAIALLNHPKLLILDEPT 152
Query: 173 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL-- 230
GLD + + F G +I EV L D I ++S+G + YQG +
Sbjct: 153 NGLDPIGIQELRELIRSFPE--QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210
Query: 231 -EHVEQFF 237
E++E+ F
Sbjct: 211 SENLEKLF 218
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 67/241 (27%), Positives = 100/241 (41%), Gaps = 64/241 (26%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKV-------TYNGHDMHEFVPQRTAAYIS 53
M LLGP G+GK+TL L G L + SG+V Y+ + E ++T +
Sbjct: 30 MVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEV--RKTVGIVF 84
Query: 54 QH-DIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVRE 112
Q+ D + TV E +AF G+ E+ +R K A +KAV E
Sbjct: 85 QNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA-----------LKAVGME 128
Query: 113 GQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 172
G E ++ +SGGQ+KRV +L + +DE +
Sbjct: 129 GFE-----------------------NKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT 165
Query: 173 TGLDSSTTFHIVNSLGQFNHILNG-TALISL----LQPAPEVYNLFDDIILVSDGQIVYQ 227
+GLD I+ L N G T +IS L P VY D + ++SDG+I+ +
Sbjct: 166 SGLDPMGASQIMKLLYDLNK--EGITIIISTHDVDLVP---VYA--DKVYVMSDGKIIKE 218
Query: 228 G 228
G
Sbjct: 219 G 219
|
Length = 275 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 48/243 (19%), Positives = 94/243 (38%), Gaps = 57/243 (23%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
+ LLGP G+GKTT + G L+ + G++T+NG + + + R Y+ +
Sbjct: 30 IFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNRI-GYLPEERGLYP 85
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
+MTV + L + A +G+ + E K+
Sbjct: 86 KMTVEDQLKYLAELKGM----------PKAEIQKKL------------------------ 111
Query: 121 DYILKVLDLDVCADTVVGDEMLRGI---SGGQRKRVTTGEMLVGPAHA---LFMDEISTG 174
L+ L+ + + + I S G ++++ + + H L +DE +G
Sbjct: 112 QAWLERLE--------IVGKKTKKIKELSKGNQQKI---QFISAVIHEPELLILDEPFSG 160
Query: 175 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234
LD + +++ + G +I V L D ++++ GQ V G +E +
Sbjct: 161 LDPVNVELLKDAIFELKE--EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIR 218
Query: 235 QFF 237
+ F
Sbjct: 219 RSF 221
|
Length = 300 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 30/184 (16%)
Query: 695 GVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKT----TLMDVLAGRKTRGYITGNITIS 750
+ + G+S G AL+G +GSGK+ +++ +L + +G+I
Sbjct: 17 HQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAA-AHPSGSILFD 75
Query: 751 G-----YPKNQETFTRISGYCEQNDIH----------SPYVTVYESLLYSAWLRLSSEVN 795
G + Q + G N I +P T+ L LRL ++
Sbjct: 76 GEDLLAASERQ--LRGVRG----NKIGMIFQEPMTSLNPLHTI-GKQLAEV-LRLHRGLS 127
Query: 796 SKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 855
E++ELV + + L P + LS QR+R+ IA+ L P ++ DEPT
Sbjct: 128 RAAARARALELLELVGIPEPEKRLDAYP--HELSGGQRQRVMIAMALANEPDLLIADEPT 185
Query: 856 SGLD 859
+ LD
Sbjct: 186 TALD 189
|
Length = 534 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 815 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 874
LR+ L+ P + LS +++RL A L+ P +F+DE TS LD + + + ++
Sbjct: 80 LREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--- 135
Query: 875 DTGRTVVCTIHQPSIDIF 892
+ G TV+ H+PS+ F
Sbjct: 136 ELGITVISVGHRPSLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 43/188 (22%)
Query: 707 VSGAFRPGVLTALMGVTGSGKTTLMDVLAG-RKTRGYITGNITISGYPKNQETFTRISGY 765
+S R G + L GV G+G+T L + L G R RG G I + +E I+
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIML----NGKE----INAL 330
Query: 766 CEQNDIHSPYVTVYE------------------SLLY---SAWLRLSSEVNSKTREMFVE 804
+ V + E +L + W++ + E + E +
Sbjct: 331 STAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE--NAVLERYRR 388
Query: 805 EVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 864
+ ++ N QA L G N Q+K L IA L A+P ++ +DEPT G+D A
Sbjct: 389 ALN--IKFNHAEQAARTLSGGN-----QQKVL-IAKCLEASPQLLIVDEPTRGVDVSARN 440
Query: 865 VVMRTVRN 872
+ + +R+
Sbjct: 441 DIYQLIRS 448
|
Length = 510 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 48/171 (28%)
Query: 714 GVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISG---YPKN---QETFT 760
G +TAL+G +G GK+T++ D++ G + G + G Y E
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS----LKGRVLFDGTDLYDPRVDPVEVRR 94
Query: 761 RISGYCEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 819
RI +Q + P+ ++YE++ + A +N T +M ELVE LR+A
Sbjct: 95 RIGMVFQQPN---PFPKSIYENIAFGA------RINGYTGDM-----DELVE-RSLRKAA 139
Query: 820 V-----------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
V G LS Q++RL IA + P +I MDEP S LD
Sbjct: 140 VWDECKDKLNESG----YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-04
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 44/182 (24%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGYPKNQE----- 757
+ G+ G L+G +G GK+TL+ ++AG + IT G I I G N+
Sbjct: 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEPADR 76
Query: 758 ----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 813
F QN P+++V E++ Y +R + + R V E ++EL
Sbjct: 77 DIAMVF--------QNYALYPHMSVRENMAYGLKIRGMPKAEIEER---VAEAARILELE 125
Query: 814 PL-----RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAVV 866
PL R+ LS QR+R+ + +V P++ DEP S LDA R
Sbjct: 126 PLLDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ--- 172
Query: 867 MR 868
MR
Sbjct: 173 MR 174
|
Length = 356 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 38/173 (21%)
Query: 716 LTALMGVTGSGKTTLM---DVLAGRKTRGYITGNITISGYPKNQ----------ETFTRI 762
+TAL+G +G GK+T + + + + G I + +P N E RI
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HPDNVNILSPEVDPIEVRMRI 101
Query: 763 SGYCEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV- 820
S ++ + P+ +++E++ Y +R R +EE +E N LR A +
Sbjct: 102 SMVFQKPN---PFPKSIFENVAYGLRIR------GVKRRSILEERVE----NALRNAALW 148
Query: 821 -------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
G N LS Q++RL IA L +P I+ DEPTS LD A A +
Sbjct: 149 DEVKDRLGDLAFN-LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI 200
|
Length = 265 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHD---MHEFVPQ--RTAAYISQH 55
+ LLGP GSGK+TL+ +AG L+ SG + +G D + + +P R + Q
Sbjct: 28 IVALLGPSGSGKSTLLRCIAG-LEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQD 84
Query: 56 DIHIGEMTVRETLAF 70
+TV E +A
Sbjct: 85 FALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 66/276 (23%), Positives = 105/276 (38%), Gaps = 85/276 (30%)
Query: 2 TLLLGPPGSGKTTLMLAL--AGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDI-- 57
T L+GP G GK+TL+ +L L ++ GKV ++G D+ Y + D+
Sbjct: 30 TALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDI----------YDKKIDVVE 79
Query: 58 ---HIG---------EMTVRETLAFSARCQGVGSR--YDMLVELSRREKAAKIIPDADID 103
+G M++ + +A+ R G+ + D +VE S + KAA + D D
Sbjct: 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLK-KAA--LWDEVKD 136
Query: 104 VFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPA 163
L A G+SGGQ++R+ L
Sbjct: 137 ------------------------RLHDSA---------LGLSGGQQQRLCIARALAVEP 163
Query: 164 HALFMDEISTGLDSSTTFHI---VNSLGQFNHILNGTALISL--LQPAPEVYNLFDDIIL 218
L +DE ++ LD T I + L + T +I +Q A + D
Sbjct: 164 EVLLLDEPTSALDPIATGKIEELIQELKK-----KYTIVIVTHNMQQAARIS---DRTAF 215
Query: 219 VSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFL 254
DG++V GP EQ F + PK K D++
Sbjct: 216 FYDGELVEYGP---TEQIFTN-----PKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 60/241 (24%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIG 60
L+G GSGK+T+ L D G++ +GHD+ ++ + A +SQ ++H+
Sbjct: 374 LVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQ-NVHLF 429
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
T+ +A++ SR + E+AA+
Sbjct: 430 NDTIANNIAYAR--TEQYSREQI-------EEAAR--------------------MAYAM 460
Query: 121 DYILKVLDLDVCADTVVGDE--MLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS 178
D+I K +D DTV+G+ +L SGGQR+R+ L+ + L +DE ++ LD+
Sbjct: 461 DFINK---MDNGLDTVIGENGVLL---SGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 179 TTFHIVNSLGQFNHILNGTALI-----SLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
+ I +L + N T+L+ S ++ A D+I++V DG+IV +G H
Sbjct: 515 SERAIQAALDELQK--NRTSLVIAHRLSTIEKA-------DEILVVEDGEIVERG--THA 563
Query: 234 E 234
E
Sbjct: 564 E 564
|
Length = 582 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 46/176 (26%), Positives = 66/176 (37%), Gaps = 47/176 (26%)
Query: 4 LLGPPGSGKTTLMLALAG--KLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIG 60
LLGP G GKTT++ +AG D SG++ +G D+ R + Q
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPD-----SGRIMLDGQDITHVPAENRHVNTVFQSYALFP 99
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
MTV E +AF R Q P A+I V E
Sbjct: 100 HMTVFENVAFGLRMQKT--------------------PAAEI----TPRVMEA------- 128
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
L+++ L+ A +SGGQ++RV +V L +DE + LD
Sbjct: 129 ---LRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 64/284 (22%), Positives = 110/284 (38%), Gaps = 64/284 (22%)
Query: 2 TLLLGPPGSGKTTLMLALAGKL------DSSLKASGKVTYNGHDMHEFVPQRTAAYISQH 55
T L+G GSGK+T+ + G L +S + G +T + + + ++
Sbjct: 36 TALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG-ITLTAKTVWD-IREKVGIVFQNP 93
Query: 56 DIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQE 115
D TV + +AF + V R + KI+ D DV M
Sbjct: 94 DNQFVGATVGDDVAFGLENRAVP-----------RPEMIKIVRDVLADVGM--------- 133
Query: 116 ANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT-TGEMLVGPAHALFMDEISTG 174
DYI D +SGGQ++RV G + V P + +DE ++
Sbjct: 134 ----LDYI---------------DSEPANLSGGQKQRVAIAGILAVEP-KIIILDESTSM 173
Query: 175 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV- 233
LD + I+ + + N +IS+ E N+ D ++++ DG+++ QG +
Sbjct: 174 LDPAGKEQILKLIRKL-KKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIF 231
Query: 234 --EQFFISMGFKCP---------KRKGIADFLQEVTSRKDQEQY 266
+ +G P K KGI+ QE+ + + QY
Sbjct: 232 SKVEMLKEIGLDIPFVYKLKNKLKEKGIS-VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 41/212 (19%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNIT-ISGYPKNQETFTRI 762
L+ VS G A++G TGSGKTT ++ L TG I I KN++
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD--TGTIEWIFKDEKNKKKTKEK 80
Query: 763 SGYCEQNDIHSPYV---------------------------TVYESLLYSAWLRLSSEVN 795
E+ I T+ + +++ +S V+
Sbjct: 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGP---VSMGVS 137
Query: 796 SKTREMFVEEVMELVEL--NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 853
+ + + +ELV L + L+++ L G Q++R+ +A L P + DE
Sbjct: 138 KEEAKKRAAKYIELVGLDESYLQRSPFELSG------GQKRRVALAGILAMEPDFLVFDE 191
Query: 854 PTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 885
PT+GLD + ++ N G+T++ H
Sbjct: 192 PTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 20/156 (12%)
Query: 716 LTALMGVTGSGKTT-------LMDVLAGRKTRG---YITGNITISGYPKNQETFTRISGY 765
+TA++G +G GK+T +++++ KT G Y NI Y +E T +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 766 CEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-NPLRQALVGLP 823
++ + P+ ++Y+++ Y ++ + KT + VE+ + + + L+ L
Sbjct: 111 FQKPN---PFPKSIYDNVTYGP--KIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL--HD 163
Query: 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 164 NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 690 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM---DVLAGRKTRGYITGN 746
E K H +L+ + G + ++G +GSGK+TL+ + L + I
Sbjct: 3 EFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDG 62
Query: 747 ITISGYPKNQETFTRI-SGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEE 805
+ ++ PK E R +G Q P++T E++++ V ++E ++
Sbjct: 63 LKVND-PKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP-----LRVRGASKEEAEKQ 116
Query: 806 VMELVELNPLRQALVGL-------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858
EL+ A VGL P + LS Q++R+ IA L P ++ DEPTS L
Sbjct: 117 ARELL-------AKVGLAERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSAL 167
Query: 859 DARAAAVVMRTVRNTVDTGRTVVCTIHQ 886
D V++ +++ + G T+V H+
Sbjct: 168 DPELRHEVLKVMQDLAEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 34/219 (15%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK--NQ 756
D +L GVS +TA++G +G GK+T + L + + + G + NQ
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL---NRMNELESEVRVEGRVEFFNQ 74
Query: 757 ETFTR---ISGYCEQNDIHSPY-----VTVYESLLYSAWL---RLSSEVNSKTREMFVEE 805
+ R ++ Q + P ++VY+++ Y + R E++ VE
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD-----IVES 129
Query: 806 VMELVEL-----NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860
++ +L + + ++ + L G Q++RL IA L P ++ MDEP GLD
Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSG------GQQQRLCIARALAVKPKVLLMDEPCFGLDP 183
Query: 861 RAAAVVMRTVRN-TVDTGRTVVCTIHQ-PSIDIFEAFDA 897
A+ V +++ + + T+V H + F A
Sbjct: 184 IASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTA 222
|
Length = 261 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 46/181 (25%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISGYPKNQ 756
+ G+ F +TAL+G +GSGK+T + D + + +TG I G N+
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIAR----VTGQILYRGIDINR 91
Query: 757 ETFTRISGYCEQNDIH------SPYV-TVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL 809
+ I+ Y + I +P+ ++YE++ ++ L + + K + E+
Sbjct: 92 K---EINVYEMRKHIGMVFQRPNPFAKSIYENITFA--LERAGVKDKK-------VLDEI 139
Query: 810 VELNPLRQALV-----------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858
VE L+QA + L LS Q++RL IA + P I+ MDEP S L
Sbjct: 140 VE-TSLKQAALWDQVKDDLHKSAL----TLSGGQQQRLCIARAIAVKPDILLMDEPASAL 194
Query: 859 D 859
D
Sbjct: 195 D 195
|
Length = 267 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 864
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 2e-04
Identities = 40/176 (22%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 762
+L+G+S P ++G TG+GK+++++ L + G I I + T
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT-- 1306
Query: 763 SGYCEQNDIHSPYVTVYES-LLYSAWLRLSSEVNSKTREMFVEEVMELVEL-NPLRQALV 820
D+ + +S +L+S +R + + S+ + + E +E + + + +
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 821 GL-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 871
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 804 EEVMELVELNPLRQALVGLPGVN--------GLSTEQRKRLTIAVELVANPSIIFMDEPT 855
+ ELVE LRQA + VN GLS Q++RL IA L +P +I MDEP
Sbjct: 171 DAEDELVE-RSLRQAAL-WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPA 228
Query: 856 SGLDARAAA 864
S LD A +
Sbjct: 229 SALDPIATS 237
|
Length = 305 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-04
Identities = 55/240 (22%), Positives = 88/240 (36%), Gaps = 58/240 (24%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNG---HDM--HEFVP--QRTAAYISQ 54
T L GP GSGKT+L+ +AG G++ NG D F+P +R Y+ Q
Sbjct: 27 TALFGPSGSGKTSLINMIAGLTRP---DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83
Query: 55 HDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQ 114
TVR L + S R + +++ I+ +
Sbjct: 84 DARLFPHYTVRGNLRYGM-------------WKSMRAQFDQLVALLGIEHLL-------- 122
Query: 115 EANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 174
D +SGG+++RV G L+ L MDE
Sbjct: 123 ------------------------DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158
Query: 175 LDSSTTFHIVNSLGQ-FNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
LD I+ L + + I ++ + EV L D ++++ +G++ GPLE V
Sbjct: 159 LDLPRKREILPYLERLRDEI--NIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEV 216
|
Length = 352 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 50/187 (26%)
Query: 1 MTLLLGPPGSGKTTLMLAL--AGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIH 58
+T L+GP GSGK+TL+ ++ L+ + +G + YNGH++ + P+ + +
Sbjct: 33 ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI--YSPRTDTVDLRK---E 87
Query: 59 IG---------EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAV 109
IG M++ E + + R +G+ ++K V +AV
Sbjct: 88 IGMVFQQPNPFPMSIYENVVYGLRLKGI------------KDKQ----------VLDEAV 125
Query: 110 VREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 169
+ + A++ + +K D D+ + G+SGGQ++RV +L + +D
Sbjct: 126 EKSLKGASIWDE--VK----DRLHDSAL------GLSGGQQQRVCIARVLATSPKIILLD 173
Query: 170 EISTGLD 176
E ++ LD
Sbjct: 174 EPTSALD 180
|
Length = 252 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 60/226 (26%), Positives = 90/226 (39%), Gaps = 41/226 (18%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGE-M 62
++GP GSGK+TL KL L + PQ + D+ I +
Sbjct: 488 IVGPSGSGKSTLT-----KLLQRL---------------YTPQHGQVLVDGVDLAIADPA 527
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
+R R GV + ++L S R+ A P A + + A G D+
Sbjct: 528 WLR-------RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAH-----DF 575
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 182
I + L +T VG E +SGGQR+R+ LVG L DE ++ LD +
Sbjct: 576 ISE---LPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEAL 631
Query: 183 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
I+ ++ I G +I + V D II++ GQI G
Sbjct: 632 IMRNM---REICRGRTVIIIAHRLSTVRAC-DRIIVLEKGQIAESG 673
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 60/247 (24%), Positives = 99/247 (40%), Gaps = 65/247 (26%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTA----AYISQ-H 55
+T +LG G GKTTL+ L G L SG + +G D+ + P A AY+ Q
Sbjct: 28 VTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGR 84
Query: 56 DIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQE 115
+I +TV E L L L+ + ++ IPD ++F
Sbjct: 85 EI-FPRLTVEENL---------------LTGLAALPRRSRKIPDEIYELFP--------- 119
Query: 116 ANVITDYILKVLDLDVCADTVVGDEML--RG--ISGGQRKRVTTGEMLVGPAHALFMDEI 171
+LK EML RG +SGGQ++++ LV L +DE
Sbjct: 120 -------VLK--------------EMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP 158
Query: 172 STGLDSSTTFHIVNSLGQFNHILNGTALISLL---QPAPEVYNLFDDIILVSDGQIVYQG 228
+ G+ S I+ +G+ L +++L Q L D ++ G++V G
Sbjct: 159 TEGIQPS----IIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASG 214
Query: 229 PLEHVEQ 235
+ +++
Sbjct: 215 AGDELDE 221
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 3e-04
Identities = 41/187 (21%), Positives = 83/187 (44%), Gaps = 14/187 (7%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN-----QET 758
++ VS + R G + + G+ G+G+T L+ L G G GN+ I+G P + Q
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKFEGNVFINGKPVDIRNPAQAI 334
Query: 759 FTRISGYCEQNDIHS--PYVTVYESLLYSAWLRLS--SEVNSKTREMFVEEVMELVELNP 814
I+ E H P + V +++ S +++ + ++ +++
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV-- 392
Query: 815 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 874
+ A LP + LS +++ +A L+ NP ++ +DEPT G+D A + + +
Sbjct: 393 -KTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLA 450
Query: 875 DTGRTVV 881
G ++
Sbjct: 451 QEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 62/210 (29%), Positives = 96/210 (45%), Gaps = 31/210 (14%)
Query: 697 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT---GNITISGYP 753
DD LVL N ++ + AL+G TGSGK+TL +L G Y G I + G P
Sbjct: 351 RDDNLVLQN-INLSVPSRGFVALVGHTGSGKSTLASLLMG-----YYPLTEGEIRLDGRP 404
Query: 754 KNQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 811
+ + R Q D P V + ++ L A + L ++ E V + +E V+
Sbjct: 405 LSSLSHSVLRQGVAMVQQD---P-VVLADTFL--ANVTLGRDI----SEEQVWQALETVQ 454
Query: 812 LNPLRQAL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 864
L L ++L +G G N LS Q++ L +A LV P I+ +DE T+ +D+
Sbjct: 455 LAELARSLPDGLYTPLGEQG-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQ 513
Query: 865 VVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 894
+ + + V T+V H+ S I EA
Sbjct: 514 AIQQALA-AVREHTTLVVIAHRLST-IVEA 541
|
Length = 592 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 3e-04
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 37/177 (20%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG---YPKNQETFT 760
LNG++ + G L A++G G GK++L+ L + + G++ + G Y Q
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKGSVAYVPQQAWI- 710
Query: 761 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL- 819
QND ++ E++L+ L E + ++V+E L P + L
Sbjct: 711 -------QND------SLRENILFGKALN----------EKYYQQVLEACALLPDLEILP 747
Query: 820 ------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV 870
+G GVN LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 748 SGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHV 803
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 885
LS Q++RL IA + +P +I MDEP S LD A + + + + TVV H
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 26/203 (12%)
Query: 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG--------- 751
L +L+G++ + G AL+G +GSGK+T++ +L G I + G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILM--TLEPIDEGQIQVEGEQLYHMPGR 70
Query: 752 ----YPKNQETFTRIS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVE 804
P +++ ++ G Q+ P+ TV +++ + L V R +
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVL-----VLGMARAEAEK 125
Query: 805 EVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 864
MEL+++ L +P LS Q++R+ IA L P ++ DE TS LD
Sbjct: 126 RAMELLDMVGLADKADHMPA--QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVG 183
Query: 865 VVMRTVRN-TVDTGRTVVCTIHQ 886
V+ +R + T++ H+
Sbjct: 184 EVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 701 LVL-LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RGYI---TGNITISGYPK 754
LVL ++ S G + LMG++GSGK+TL+ + G RG + G+ ++
Sbjct: 36 LVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANC 95
Query: 755 NQETF-----TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL 809
+ T R+S +Q + P+ TV E++ + L + + R V+E +EL
Sbjct: 96 DAATLRRLRTHRVSMVFQQFAL-LPWRTVEENVAFG--LEMQG-MPKAERRKRVDEQLEL 151
Query: 810 VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
V L G LS ++R+ +A I+ MDEP S LD
Sbjct: 152 VGLAQWADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 44/175 (25%), Positives = 65/175 (37%), Gaps = 44/175 (25%)
Query: 5 LGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTV 64
LGP G GKTTL+ +AG + G +T +G + P + Q++ + V
Sbjct: 33 LGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNV 87
Query: 65 RETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYIL 124
++ +AF + GV R E A ++ +K V EG E I
Sbjct: 88 QDNVAFGLQLAGVEKM-------QRLEIAHQM---------LKKVGLEGAEKRYIWQ--- 128
Query: 125 KVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 179
+SGGQR+RV L L +DE LD+ T
Sbjct: 129 --------------------LSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT 163
|
Length = 255 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 56/269 (20%), Positives = 101/269 (37%), Gaps = 78/269 (28%)
Query: 1 MTLLLGPPGSGKTTLMLAL--AGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIH 58
+T L+GP G GK+TL+ L L +K +GK+T +G D++ + ++ I
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID------VADLRIK 84
Query: 59 IG---------EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAV 109
+G M++ E +A+ R QG+ K K++ V
Sbjct: 85 VGMVFQKPNPFPMSIYENVAYGLRAQGI--------------KDKKVL---------DEV 121
Query: 110 VREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 169
V + D + L G+SGGQ++R+ + + MD
Sbjct: 122 VERSLRGAALWDEVKDRLKSHA-----------FGLSGGQQQRLCIARTIAMEPDVILMD 170
Query: 170 EISTGLDSSTT-------------FHIV---NSLGQFNHILNGTALISLLQPAPEVYNLF 213
E ++ LD T + IV +S+ Q I + TA L
Sbjct: 171 EPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFF-----------LM 219
Query: 214 DDIILVSDGQIVYQGPLEHVEQFFISMGF 242
+++ D Q+++ P + Q +++ F
Sbjct: 220 GELVEHDDTQVIFSNPKDDRTQGYVNGDF 248
|
Length = 249 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 29/159 (18%)
Query: 714 GVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG----YPKNQETFTRISGYCEQN 769
G TA++G G GK+TL+ L+ T G++ + G + ++E RI G QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKEVARRI-GLLAQN 89
Query: 770 DIHSPYVTVYESL---------LYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 820
+TV E + L++ W K E V + M+ + L
Sbjct: 90 ATTPGDITVQELVARGRYPHQPLFTRW--------RKEDEEAVTKAMQATGITHL----- 136
Query: 821 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
V+ LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 137 ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 66/275 (24%), Positives = 111/275 (40%), Gaps = 77/275 (28%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
++G G GK++L+ AL ++D K G V G +VPQ+ A+I Q+D +
Sbjct: 669 VVGQVGCGKSSLLSALLAEMD---KVEGHVHMKGS--VAYVPQQ--AWI-QND------S 714
Query: 64 VRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYI 123
+RE + F Y ++E A ++PD +I
Sbjct: 715 LRENILFG--KALNEKYYQQVLE------ACALLPDLEI--------------------- 745
Query: 124 LKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHI 183
L T +G++ + +SGGQ++RV+ + A D+ + +D+ HI
Sbjct: 746 -----LPSGDRTEIGEKGV-NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 799
Query: 184 V-NSLGQFNHILNGTAL-----ISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFF 237
+ +G + N T + IS L P+V D II++S G+I G + + Q
Sbjct: 800 FEHVIGPEGVLKNKTRILVTHGISYL---PQV----DVIIVMSGGKISEMGSYQELLQ-- 850
Query: 238 ISMGFKCPKRKG-IADFLQEVTSRKDQ---EQYWV 268
R G A+FL+ + Q E W
Sbjct: 851 ---------RDGAFAEFLRTYAPDEQQGHLEDSWT 876
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 22/169 (13%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYIT-GNITISGYPKN 755
+N +S +TAL+G +G GK+T + D++ ++ G I + I N
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 756 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL--- 812
R G Q P ++Y ++ ++ L+ + E + VEE + L
Sbjct: 97 VVNLRREIGMVFQKPNPFPK-SIYNNITHA--LKYAGERRKSVLDEIVEESLTKAALWDE 153
Query: 813 --NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
+ L + + L G Q++RL IA L P+++ +DEP S LD
Sbjct: 154 VKDRLHSSALSLSG------GQQQRLCIARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 25/189 (13%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 761
L +S G ++G G+GK+TL+ ++AG + T +G + ++G +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT----SGKVKVTG---------K 89
Query: 762 ISGYCEQNDIHSPYVTVYESL-LYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 820
++ E P +T E++ L L L+ + + V+E++E EL
Sbjct: 90 VAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDE----KVDEIIEFAELGDFID--- 142
Query: 821 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTV 880
P V S+ RL +V P I+ +DE + DA + + V+ +T+
Sbjct: 143 -QP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTI 200
Query: 881 VCTIHQPSI 889
V H
Sbjct: 201 VLVSHDLGA 209
|
Length = 249 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 760
L GV+ RPG + L G +G+GK+TL+ ++ G R + G I I+ + F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 761 RIS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-NPLRQA 818
R G Q+ TVY+++ + +S + + R V ++ V L + +
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR---VSAALDKVGLLDKAKNF 134
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGR 878
+ L G +++R+ IA +V P+++ DEPT LD + ++R G
Sbjct: 135 PIQLSG------GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGV 188
Query: 879 TVVCTIH 885
TV+ H
Sbjct: 189 TVLMATH 195
|
Length = 222 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP--QRTAAYISQHDIH 58
+ GP GSGKTTL+ LAG S +G+V NG + R Y+
Sbjct: 28 ALQVTGPNGSGKTTLLRILAG---LSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGI 84
Query: 59 IGEMTVRETLAFSAR 73
++V E L F
Sbjct: 85 KTTLSVLENLRFWHA 99
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 45/174 (25%), Positives = 67/174 (38%), Gaps = 45/174 (25%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEM 62
L+ G G+GKTTL+ LAG L SG++ +G R AY+ ++
Sbjct: 41 LVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADL 97
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
+ E L F G RR AK +P + + A+V + Y
Sbjct: 98 STLENLHFLCGLHG------------RR---AKQMPGSAL-----AIVG-------LAGY 130
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
DT+V R +S GQ+KR+ + + PA +DE LD
Sbjct: 131 ----------EDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 25/213 (11%)
Query: 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTR 761
+L G+ G + AL+G G+GK+TLM ++AG +G + I G P + T +
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAK 82
Query: 762 ISGY----CEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL-VELNPLR 816
Q + P ++V E++L+ L S + + + L +L+
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASMQK--MKQLLAALGCQLDLDS 136
Query: 817 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 876
A L R+ + I L+ + I+ +DEPT+ L + +R +
Sbjct: 137 SA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ 189
Query: 877 GRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDGY 909
G +V H+ +I + D +S +RDG
Sbjct: 190 GVGIVFISHKLP-EIRQLADR----ISVMRDGT 217
|
Length = 510 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 5e-04
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 23/162 (14%)
Query: 707 VSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFTRIS 763
VS G + AL+G +G GK+TL+ +LAG + T G I + +S P Q +
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMF 97
Query: 764 GYCEQNDIHSPYVTVYESLLYS-AWLRLS-SEVNSKTREMFVEEVMELVELNPL--RQAL 819
Q+ P++TV +++ + +L +E+ S+ V E++ LV + R+
Sbjct: 98 ----QSYALFPHMTVEQNIAFGLKQDKLPKAEIASR-----VNEMLGLVHMQEFAKRKP- 147
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
+ LS QR+R+ +A L P ++ +DEP LD +
Sbjct: 148 ------HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
|
Length = 377 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 28/179 (15%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK--------- 754
+ G+S +TA++G +G GK+T + L R + + G + + G
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTL-NRISE--LEGPVKVEGVVDFFGQNIYDP 79
Query: 755 --NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL 812
N R G Q P +++YE++ Y +R+S+++ + VE ++ L
Sbjct: 80 RININRLRRQIGMVFQRPNPFP-MSIYENVAYG--VRISAKLPQADLDEIVESALKGAAL 136
Query: 813 -----NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
+ L ++ +GL G Q++RL IA L P ++ MDEP S LD A V
Sbjct: 137 WQEVKDKLNKSALGLSG------GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 5e-04
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLD 24
L++GPPGSGKTTL ALA +L
Sbjct: 5 ILIVGPPGSGKTTLARALARELG 27
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 5e-04
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 817 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 872
+ LVG + LS Q++R++IA ++ NP I+ +DE TS LD ++ +V +T+ N
Sbjct: 570 ETLVG-SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 63/273 (23%), Positives = 91/273 (33%), Gaps = 85/273 (31%)
Query: 4 LLGPPGSGKTTLMLALAGKLD----SSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHI 59
+LGP G GKTT + LAG L V+Y PQ YI
Sbjct: 30 ILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYK--------PQ----YIKADY--- 74
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVI 119
E TVR+ L+ I D + K
Sbjct: 75 -EGTVRDLLS-------------------------SITKDFYTHPYFK------------ 96
Query: 120 TDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 179
T+ I K L ++ + D + +SGG+ +RV L A +DE S LD
Sbjct: 97 TE-IAKPLQIEQ-----ILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQ 150
Query: 180 TFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG-PLEHVEQFFI 238
+ +F TA + V + I ++D IV++G P +
Sbjct: 151 RLMASKVIRRFAENNEKTAFV--------VEHDIIMIDYLADRLIVFEGEPSVN------ 196
Query: 239 SMGFKCP---KRKGIADFLQE--VTSRKDQEQY 266
G P R G+ FL+ +T R+D E
Sbjct: 197 --GVANPPQSLRSGMNRFLKNLDITFRRDPETG 227
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 6e-04
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 50/193 (25%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRT-------AAYIS 53
+T+++G G GK++L+LA+ G++ GKV ++ + E + T AY +
Sbjct: 29 LTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAA 85
Query: 54 QHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREG 113
Q + TV E + F + RY + + A + PD D+ F G
Sbjct: 86 QKPWLL-NATVEENITFGSPFN--KQRYKAVTD------ACSLQPDIDLLPF-------G 129
Query: 114 QEANVITDYILKVLDLDVCADTVVGDEMLRGI--SGGQRKRVTTGEMLVGPAHALFMDEI 171
+ T +G+ RGI SGGQR+R+ L + +F+D+
Sbjct: 130 DQ-------------------TEIGE---RGINLSGGQRQRICVARALYQNTNIVFLDDP 167
Query: 172 STGLDSSTTFHIV 184
+ LD + H++
Sbjct: 168 FSALDIHLSDHLM 180
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 58/232 (25%), Positives = 88/232 (37%), Gaps = 57/232 (24%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQH------DI 57
++GP GSGK+TL+ LAG D S SG+V G +H+ AA ++H
Sbjct: 41 IVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97
Query: 58 H-IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
H I +T E +A +G S D R A ++ G
Sbjct: 98 HLIPNLTALENVALPLELRGESSA-DS------RAGAKALL------------EAVGLGK 138
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
+ +SGG+++RV G LF DE + LD
Sbjct: 139 RL--------------------THYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLD 178
Query: 177 SSTTFHIVNSLGQFNHILN---GTALISLLQPAPEVYNLFDDIILVSDGQIV 225
+T I + L F LN GT L+ L+ P++ D + + G++V
Sbjct: 179 RATGDKIADLL--FA--LNRERGTTLV-LVTHDPQLAARCDRQLRLRSGRLV 225
|
Length = 228 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 7e-04
Identities = 54/241 (22%), Positives = 87/241 (36%), Gaps = 70/241 (29%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHI- 59
LLG G+GK+TLM +AG + SG + G+ P + Y+ + +
Sbjct: 42 LLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLF 98
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVI 119
++V+E + F L +R+ + + MK ++
Sbjct: 99 PNLSVKENILFG---------------LPKRQASMQK---------MKQLLAA------- 127
Query: 120 TDYILKV-LDLDVCADTV-VGD----EMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 173
L LDLD A ++ V D E+LRG L+ + L +DE +
Sbjct: 128 ----LGCQLDLDSSAGSLEVADRQIVEILRG--------------LMRDSRILILDEPTA 169
Query: 174 GL---DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230
L ++ F + L G IS PE+ L D I ++ DG I G
Sbjct: 170 SLTPAETERLFSRIRELLAQGV---GIVFIS--HKLPEIRQLADRISVMRDGTIALSGKT 224
Query: 231 E 231
Sbjct: 225 A 225
|
Length = 510 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 36/183 (19%), Positives = 55/183 (30%), Gaps = 61/183 (33%)
Query: 713 PGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIH 772
PG + ++G GSGKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 773 SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 832
E +EEV++ ++ S E
Sbjct: 39 ---------------------------EDILEEVLD------QLLLIIVGGKKASGSGEL 65
Query: 833 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD------TGRTVVCTIHQ 886
R RL +A+ P ++ +DE TS LDA A+++ + TV+ T +
Sbjct: 66 RLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
Query: 887 PSI 889
Sbjct: 126 EKD 128
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 7e-04
Identities = 54/226 (23%), Positives = 80/226 (35%), Gaps = 59/226 (26%)
Query: 708 SGAFRPG-VLTALMGVTGSGKTTLMDVLAGR--KTRGYITGNITISGYPKNQETFTRISG 764
G G V+ + G G GKTT +LAG G + + IS Y K Q I
Sbjct: 359 GGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ----YIKP 411
Query: 765 YCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 824
TV + LL S L S + E+++ ++L L V
Sbjct: 412 --------DYDGTVED-LLRSITDDLGSS-------YYKSEIIKPLQLERLLDKNV---- 451
Query: 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTI 884
LS + +R+ IA L + + +DEP++ LD V + +R + +
Sbjct: 452 -KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVV 510
Query: 885 -HQPSIDI------------FEAFDAGIPGVS-------KIRDGYN 910
H DI FE G PG +R+G N
Sbjct: 511 DH----DIYMIDYISDRLMVFE----GEPGKHGHASGPMDMREGMN 548
|
Length = 590 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 44/227 (19%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEM 62
+GP G+GKTT + L+G L + SG+V G VP +R ++ + + G+
Sbjct: 52 FIGPNGAGKTTTLKILSGLLQPT---SGEVRVAG-----LVPWKRRKKFLRRIGVVFGQ- 102
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVR-EGQEANVITD 121
+ L + +P D + A+ D
Sbjct: 103 --KTQLWWD-------------------------LPVIDSFYLLAAIYDLPPARFKKRLD 135
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
+ ++LDL+ DT V R +S GQR R L+ LF+DE + GLD
Sbjct: 136 ELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190
Query: 182 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
+I N L ++N GT ++ ++ L ++++ G+++Y G
Sbjct: 191 NIRNFLKEYNR-ERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 8e-04
Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 37/232 (15%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
L+G GSGK+T LAL +L + + G++ ++G +H
Sbjct: 317 LVGESGSGKSTTGLALL-RL---INSQGEIWFDGQPLHNL-------------------N 353
Query: 64 VRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYI 123
R+ L R Q V D L+ R +II + + V + +E VI +
Sbjct: 354 RRQLLPVRHRIQVVFQ--DPNSSLNPRLNVLQIIEEG-LRVHQPTLSAAQREQQVIA--V 408
Query: 124 LKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHI 183
++ + LD E SGGQR+R+ L+ + +DE ++ LD + I
Sbjct: 409 MEEVGLDPETRHRYPAEF----SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464
Query: 184 VNSLG--QFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
+ L Q H L A + + V L +I++ G++V QG E V
Sbjct: 465 LALLKSLQQKHQL---AYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513
|
Length = 529 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 9e-04
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQ 886
LS +++R+ +A +L P + DEPT LD + A +V + V +G ++V T H
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 887 PSI 889
P +
Sbjct: 229 PEV 231
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 146 SGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALI----- 200
SGG R+RV L L DE +T LD + I++ L + GTALI
Sbjct: 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREK-GTALILITHD 213
Query: 201 -SLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFF 237
+ V + D + ++ G+IV +GP VE+ F
Sbjct: 214 LGV------VAEIADRVAVMYAGRIVEEGP---VEEIF 242
|
Length = 316 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 0.001
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 144 GISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALI--- 200
+SGGQR+R+ LV L DE ++ LD+ T + SL + L T ++
Sbjct: 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER----LKVTRIVIAH 643
Query: 201 --SLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231
S ++ A D I ++ G++V QG +
Sbjct: 644 RLSTIRNA-------DRIYVLDAGRVVQQGTYD 669
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 43/227 (18%)
Query: 708 SGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRISGY 765
G G + ++G G GKTT + +LAG + G ++ +S Y K Q G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE-DLKVS-Y-KPQYISPDYDG- 416
Query: 766 CEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 825
TV + L + S S F E+++ + L L + V
Sbjct: 417 -----------TVEDLL----RSAIRSAFGS---SYFKTEIVKPLNLEDLLERPV----- 453
Query: 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTI 884
+ LS + +R+ IA L + +DEP++ LD +V + +R ++ +T +
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVD 513
Query: 885 HQPSI-----DIFEAFDAGIPGVS-------KIRDGYNPATWMLEVT 919
H + D F+ G PG +R+G N L VT
Sbjct: 514 HDIYMIDYVSDRLIVFE-GEPGKHGHASPPMSMREGMNRFLKNLGVT 559
|
Length = 591 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 54/262 (20%), Positives = 105/262 (40%), Gaps = 55/262 (20%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDS--SLKASGKVTYNGHDMH----EFVPQRTAAYISQ 54
+T L+GP G GK+T + L D ++K +G++ + G +++ + V R +
Sbjct: 32 LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVF 91
Query: 55 HDIHIGEMTVRETLAFSARCQGVGSR--YDMLVELSRREKAAKIIPDADIDVFMKAVVRE 112
+V + +A+ + GV + D VE S ++ A + +E
Sbjct: 92 QQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAA---------------IWKE 136
Query: 113 GQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 172
++ +LD A + SGGQ++R+ L + +DE +
Sbjct: 137 TKD------------NLDRNA---------QAFSGGQQQRICIARALAVRPKVVLLDEPT 175
Query: 173 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEH 232
+ LD ++ I +L + H + LQ A + D + +G ++ GP E
Sbjct: 176 SALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRIS---DQTAFLMNGDLIEAGPTEE 232
Query: 233 VEQFFISMGFKCPKRKGIADFL 254
+ F PK++ +D+L
Sbjct: 233 M--------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 36/160 (22%)
Query: 717 TALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHS 773
T ++G++GSGK+TL +L G +G I ++G+ T + Y Q
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE---- 556
Query: 774 PYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830
PY+ ++ E+LL A + +E+ E+ ++ + +P G T
Sbjct: 557 PYIFSGSILENLLLGA--------KENVSQ---DEIWAACEIAEIKDDIENMP--LGYQT 603
Query: 831 E-----------QRKRLTIAVELVANPSIIFMDEPTSGLD 859
E Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 604 ELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 872
LS Q++RL IA + P+++ MDEP S LD A V+ ++
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 24/190 (12%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG---YPKNQETFT 760
LNGVS + G +++G GSGK+T ++ G G + I G +N
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELLTAENVWNLR 80
Query: 761 RISGYCEQN-DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVME-LVELNPL--- 815
R G QN D TV + + + E RE ++ V E L+ +N L
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGM------ENQGIPREEMIKRVDEALLAVNMLDFK 134
Query: 816 -RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 874
R+ LS Q++R+ +A + P II +DE TS LD +MR +
Sbjct: 135 TREPA-------RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIK 187
Query: 875 DTGRTVVCTI 884
+ + V +I
Sbjct: 188 EKYQLTVLSI 197
|
Length = 277 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 23/194 (11%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE 757
+ +L +S + PG L+G TGSGK+TL+ G+I I G N
Sbjct: 14 EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGDIQIDGVSWNSV 70
Query: 758 TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 817
Q + V + ++S R + + K + EE+ ++ E L+
Sbjct: 71 PL--------QKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSD---EEIWKVAEEVGLKS 119
Query: 818 ALVGLPG------VNG---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR 868
+ PG V+G LS ++ + +A +++ I+ +DEP++ LD V+ +
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 869 TVRNTVDTGRTVVC 882
T++ ++
Sbjct: 180 TLKQAFADCTVILS 193
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 50/207 (24%), Positives = 76/207 (36%), Gaps = 52/207 (25%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQH----- 55
L GP G+GKTTL+ L G L S G+V G D++ R + +
Sbjct: 30 FLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRL-RGRQLPLLRRRIGVVF 85
Query: 56 -DIHI-GEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREG 113
D + + TV E +A +G R E+ RR A
Sbjct: 86 QDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGA-------------------- 120
Query: 114 QEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 173
L+ + L+ AD +SGG+++RV +V L DE +
Sbjct: 121 ---------ALRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIVNSPPLLLADEPTG 166
Query: 174 GLDSSTTFHIVNSLGQFNHILNGTALI 200
LD + I++ L + N GT +I
Sbjct: 167 NLDPDLSERILDLLKRLN--KRGTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 40/202 (19%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
+ ++G GSGK+TL+ L G LD+ SG+V +NG + + A ++
Sbjct: 33 IVAIVGSSGSGKSTLLHLLGG-LDNP--TSGEVLFNGQSLSKLSSNERAKLRNKK----- 84
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVR--EGQEANV 118
L F + + +L + + E +V M ++ +EA
Sbjct: 85 -------LGF------IYQFHHLLPDFTALE-----------NVAMPLLIGKKSVKEAKE 120
Query: 119 ITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS 178
+L+ + L+ + + +SGG+R+RV LV + DE + LD++
Sbjct: 121 RAYEMLEKVGLEHRINHRPSE-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNN 175
Query: 179 TTFHIVNSLGQFNHILNGTALI 200
I + + + N LN T+ +
Sbjct: 176 NAKIIFDLMLELNRELN-TSFL 196
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 61/249 (24%), Positives = 93/249 (37%), Gaps = 59/249 (23%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIG 60
L+GP GSGKTT M + ++ + SG++ +G D+ E P +R Y+ Q IG
Sbjct: 32 LIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQ---QIG 85
Query: 61 ---EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
MTV E +A LV + KI + E
Sbjct: 86 LFPHMTVEENIA--------------LVPKLLKWPKEKI----------RERADE----- 116
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
+L ++ LD D +SGGQ++RV L L MDE LD
Sbjct: 117 -----LLALVGLD---PAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDP 168
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEH----- 232
T + + L T ++ + E + L D I ++ +G+IV G +
Sbjct: 169 ITRDQLQEEFKRLQQELGKT-IVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227
Query: 233 ----VEQFF 237
V +F
Sbjct: 228 ANDFVAEFV 236
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 57/238 (23%), Positives = 94/238 (39%), Gaps = 41/238 (17%)
Query: 1 MTLLLGPPGSGKTTLMLALAG--KLDSSLKASGKVTYNGHD---MHEFVPQRTAAYISQH 55
+T L+GP GSGK+TL+ +L + SG+V +G D M +R + Q
Sbjct: 31 ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQI 90
Query: 56 DIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQE 115
I +++ E +A +G + + LV+ S++E ++ VR E
Sbjct: 91 PNPIPNLSIFENVA-------LGLKLNRLVK-SKKE--------------LQERVRWALE 128
Query: 116 ANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 175
+ D + LD +SGGQ++R+ L L DE + L
Sbjct: 129 KAQLWDEVKDRLDAPAGK-----------LSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 176 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
D T I SL F + ++ + + + D + + GQIV GP V
Sbjct: 178 DPENTAKI-ESL--FLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232
|
Length = 250 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 55/238 (23%), Positives = 90/238 (37%), Gaps = 58/238 (24%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHE------FVPQRTAAYISQ 54
+T L+G G GK+TL + L+G L G V + G + + Q+ A
Sbjct: 29 VTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQD 85
Query: 55 HDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQ 114
+ I + +AFS R GV E++RR A + DA
Sbjct: 86 PEQQIFYTDIDSDIAFSLRNLGVPEA-----EITRRVDEALTLVDAQ------------- 127
Query: 115 EANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 174
+ ++ +S GQ+KRV LV A L +DE + G
Sbjct: 128 ---------------------HFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAG 166
Query: 175 LDSSTTFHIVNSL----GQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
LD + ++ + Q NH++ + I L +Y + D + ++ GQI+ G
Sbjct: 167 LDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL------IYEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 56/235 (23%), Positives = 91/235 (38%), Gaps = 49/235 (20%)
Query: 5 LGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP------QRTAAYISQHDIH 58
+G G+GK+TL+ + G L+ SG V +G D+ +R I QH
Sbjct: 37 IGRSGAGKSTLIRCING-LERP--TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNL 93
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANV 118
+ TV E +A GV + E + V E
Sbjct: 94 LSSRTVFENVALPLEIAGV----------PKAEIEER--------------VLE------ 123
Query: 119 ITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS 178
+L+++ L+ AD +SGGQ++RV L L DE ++ LD
Sbjct: 124 ----LLELVGLEDKADAYPAQ-----LSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174
Query: 179 TTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
TT I+ L N L T ++ + V + D + ++ G++V +G +E V
Sbjct: 175 TTQSILALLRDINRELGLTIVLITHE-MEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 49/180 (27%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQHDIHI 59
+ GP G GK+TL+ +A L S SG + + G D+ P+ + +Y +Q
Sbjct: 33 AITGPSGCGKSTLLKIVA-SLISP--TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVI 119
G+ TV + L F + + R D R A ++ +
Sbjct: 90 GD-TVEDNLIFPWQIR--NRRPD-------RAAALDLLARFALP---------------- 123
Query: 120 TDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML-VGPAHALFMDEISTGLDSS 178
D IL + + +SGG+++R+ L P L +DEI++ LD S
Sbjct: 124 -DSIL--------------TKNITELSGGEKQRIALIRNLQFMPK-ILLLDEITSALDES 167
|
Length = 223 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 54/233 (23%), Positives = 92/233 (39%), Gaps = 55/233 (23%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ--RTAAYISQHDIHIGE 61
L+GP G+GK+TL L D SG++ +G D+ + P R + D +
Sbjct: 371 LVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQDPVLFA 427
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
+V E + + PDA V A +
Sbjct: 428 ASVMENIRYGR-------------------------PDAT-----DEEVEAAARAAHAHE 457
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
+I L DT +G+ + +SGGQR+R+ ++ A L +DE ++ LD+ +
Sbjct: 458 FISA---LPEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQ 513
Query: 182 HIVNSLGQFNHILNG-TALI-----SLLQPAPEVYNLFDDIILVSDGQIVYQG 228
+ +L ++ G T LI + + A D I+++ G+IV QG
Sbjct: 514 LVQQAL---ETLMKGRTTLIIAHRLATVLKA-------DRIVVMDQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTA 49
++GP GSGK+TL LAG+ D + G V + G D+ E P+ A
Sbjct: 32 IMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPEDRA 76
|
Length = 248 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 44/234 (18%)
Query: 9 GSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAA----YISQ---HDIHIGE 61
G+G+T LM L G L + SG VT +GH++ PQ A YIS+ D +
Sbjct: 288 GAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
M+V+E ++ +A L SR + + E ++D
Sbjct: 345 MSVKENMSLTA-----------LRYFSR--AGGSL--------------KHADEQQAVSD 377
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
+I ++ ++ T ++ + +SGG +++V L+ L +DE + G+D
Sbjct: 378 FI-RLFNI----KTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKK 432
Query: 182 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235
I + QF G ++I + PEV + D I+++ +G+I + E Q
Sbjct: 433 EIYQLINQFKA--EGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQATQ 484
|
Length = 501 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 16/101 (15%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTA-----AYISQH 55
+ + GP G+GKT+L+ LAG +G+V + G + QR Y+
Sbjct: 29 LVQIEGPNGAGKTSLLRILAGLARP---DAGEVLWQGEPIRR---QRDEYHQDLLYLGHQ 82
Query: 56 DIHIGEMTVRETLAFSARCQGVGSRYDML-----VELSRRE 91
E+T E L F R G G + V L+ E
Sbjct: 83 PGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE 123
|
Length = 204 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 56/236 (23%), Positives = 94/236 (39%), Gaps = 47/236 (19%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHE------FVPQRTAAYISQHDI 57
L+G GSGK+TL+ L G L + SGK+ +G D+ + + ++ +
Sbjct: 38 LIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEY 94
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+ E T+ + +AF G+ E+ R K A M V
Sbjct: 95 QLFEETIEKDIAFGPINLGLSEE-----EIENRVKRA-----------MNIVG------- 131
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
LD + D + +SGGQ++RV ++ L +DE + GLD
Sbjct: 132 ---------LDYEDYKDKSPFE-----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
I+N + + + N T +I + +V L D II+++ G+ QG V
Sbjct: 178 KGRDEILNKIKELHKEYNMT-IILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232
|
Length = 287 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYIS--QHDIHIGE 61
LLG GSGK+TL+ L G L G++T +G + + ++ IS ++ +
Sbjct: 33 LLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKAL-SSLISVLNQRPYLFD 88
Query: 62 MTVRETL 68
T+R L
Sbjct: 89 TTLRNNL 95
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 35/205 (17%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ--RTAAYISQHDIHIGE 61
+LG G+GK+TL+ +AG +D +NG E P Y+ Q
Sbjct: 36 VLGLNGAGKSTLLRIMAG-VDKE--------FNG----EARPAPGIKVGYLPQEPQLDPT 82
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKII-PDADIDVFMKAVVREGQEANVIT 120
TVRE + +GV D L + E +AK PDAD+D + + + +I
Sbjct: 83 KTVRENVE-----EGVAEIKDALDRFN--EISAKFAEPDADMDALLA---EQAELQEIID 132
Query: 121 DYILKVLD--LDVCADTV---VGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 175
LD L++ D + D + +SGG+R+RV +L+ L +DE + L
Sbjct: 133 AADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHL 192
Query: 176 DSSTTFHIVNSLGQFNHILNGTALI 200
D+ + V L Q GT +
Sbjct: 193 DAES----VAWLEQHLQEYPGTVVA 213
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 46/191 (24%)
Query: 1 MTLLLGPPGSGKTTLMLAL--AGKLDSSLKASGKVTYNGHDMHEF------VPQRTAAYI 52
+T L+GP G GK+T++ +L L G+V ++G D+++ V +R
Sbjct: 41 VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVF 100
Query: 53 SQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVRE 112
Q + ++ E +AF AR G D LVE S R+ A
Sbjct: 101 QQPNPF--PKSIYENIAFGARINGYTGDMDELVERSLRKAAV------------------ 140
Query: 113 GQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 172
D C D + +E +SGGQ++R+ + + MDE
Sbjct: 141 ----------------WDECKDKL--NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPC 182
Query: 173 TGLDSSTTFHI 183
+ LD +T I
Sbjct: 183 SALDPISTLKI 193
|
Length = 269 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 37/184 (20%)
Query: 690 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNI 747
+++ G +LN +S + R G + G +G GK+TL+ ++A T G +
Sbjct: 9 QLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEG 68
Query: 748 T-ISGYPKNQETFTRISGYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREM-- 801
IS E + + YC Q +P + TVY++L++ +R ++ +
Sbjct: 69 EDISTLKP--EIYRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIR------NQQPDPAI 116
Query: 802 FVEEVMELVELNPLRQALVGLP------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 855
F++++ LP + LS +++R+++ L P ++ +DE T
Sbjct: 117 FLDDLERF-----------ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT 165
Query: 856 SGLD 859
S LD
Sbjct: 166 SALD 169
|
Length = 225 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 707 VSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYC 766
+S R G A++G GSGK+TL +LAG +G + I +P + + Y
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAG--MIEPTSGELLIDDHPLHFGDY----SYR 85
Query: 767 EQNDIHSPYVTVYESL--------LYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 818
Q I + SL + LRL++++ + RE + E + V L L
Sbjct: 86 SQR-IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL--LPDH 142
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 143 ASYYP--HMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 38/164 (23%)
Query: 716 LTALMGVTGSGKTTLM-------DVLAGRKTRGYIT--GNITISGYPKNQETFTRISGYC 766
+TA +G +G GK+T++ D++ G + G +T G + E RI G
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRI-GMV 96
Query: 767 EQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV------ 820
Q P ++Y+++ Y A +N +M ELVE LRQA +
Sbjct: 97 FQKPNPFPK-SIYDNIAYGA------RINGYKGDM-----DELVE-RSLRQAALWDEVKD 143
Query: 821 -----GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
GL LS Q++RL IA + P +I MDEP S LD
Sbjct: 144 KLKQSGL----SLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 30/191 (15%)
Query: 687 MPQEMKRRGVH--DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGR 737
M ++K RGV+ K +L ++ F +TA++G +G GK+TL+ D+++G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 738 KTRGYI---TGNITISGYPKNQETFT---RISGYCEQNDIHSPY-VTVYESLLYSAWLRL 790
+ G + NI Y N + R+ +Q + P+ ++++++ + + L
Sbjct: 61 RLEGAVLLDNENI----YSPNLDVVNLRKRVGMVFQQPN---PFPKSIFDNVAFGPRM-L 112
Query: 791 SSEVNSKTREMFVEEVMELVELNPLRQAL--VGLPGVNGLSTEQRKRLTIAVELVANPSI 848
+ S+ E+ + + + + ++ L GL LS Q++RL IA L P +
Sbjct: 113 GTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAIEPEV 168
Query: 849 IFMDEPTSGLD 859
I MDEP S LD
Sbjct: 169 ILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 33/193 (17%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI----TGNITISGYPKNQETF 759
L VS G L+G G+GK+TL+ +LAG I +G +T+ G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 760 TRISGYCEQNDIHSPYVTVYESL-LYSAWLRLSSEVNSKTREM--FVEEVMELVELNPLR 816
R+S +P +T E++ L L LS +E+ ++E++E EL
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLS------RKEIDEKIDEIIEFSELG--- 133
Query: 817 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 876
+ LP V S+ + RL A+ P I+ +DE + DA R +R +
Sbjct: 134 -DFIDLP-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191
Query: 877 GRTVVCTIHQPSI 889
G+TV+ H PS
Sbjct: 192 GKTVILVSHDPSS 204
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 137 VGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNG 196
V + + G+SGGQ++RV L L +DE ++ LD T + L L
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGI 152
Query: 197 TALISLLQPAPEVYNLFDDIILVSDGQ 223
T ++ E L D ++++ DG+
Sbjct: 153 TVVLVTHDLD-EAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 54/243 (22%), Positives = 89/243 (36%), Gaps = 53/243 (21%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHD--------MHEFVPQRTA----AY 51
++G GSGK+TL+ LAG+L G TY + E +R +
Sbjct: 34 IVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGF 90
Query: 52 ISQHDIHIGEMTVRETLAFSARCQGVGSR-YDMLVELSRREKAAKIIPDADIDVFMKAVV 110
+ Q+ M V R +G+R Y + R A + + +ID
Sbjct: 91 VHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RATAQDWLEEVEID------- 138
Query: 111 REGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 170
I D++ R SGG ++R+ LV +FMDE
Sbjct: 139 -----PTRI-------------------DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDE 174
Query: 171 ISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230
+ GLD S +++ L L G A+I + L ++++ G++V G
Sbjct: 175 PTGGLDVSVQARLLDLLRGLVRDL-GLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233
Query: 231 EHV 233
+ V
Sbjct: 234 DQV 236
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 60/250 (24%), Positives = 93/250 (37%), Gaps = 73/250 (29%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
L+G GSGK+TL LAL + S G++ ++G D+ +
Sbjct: 318 LVGESGSGKSTLGLALLRLIPSQ----GEIRFDGQDIDGL-------------------S 354
Query: 64 VRETLAFSARCQGV-----GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANV 118
+E R Q V GS LS R +II + + V + ++ V
Sbjct: 355 RKEMRPLRRRMQVVFQDPYGS-------LSPRMTVGQIIEEG-LRVHEPKLSAAERDQRV 406
Query: 119 ITDYILKVLDLDVCADTVVGDEMLR---GISGGQRKRVTTGEMLVGPAHALFMDEISTGL 175
I L+ + LD R SGGQR+R+ L+ + +DE ++ L
Sbjct: 407 IE--ALEEVGLD-------PATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSAL 457
Query: 176 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLF------------DDIILVSDGQ 223
D S ++ L+ LQ + LF +I++ DG+
Sbjct: 458 DRSVQAQVL-------------DLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504
Query: 224 IVYQGPLEHV 233
IV QGP E V
Sbjct: 505 IVEQGPTEAV 514
|
Length = 534 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.003
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 823 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTG-RTVV 881
P LS Q++R+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D +T++
Sbjct: 1354 PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTII 1413
Query: 882 CTIHQ 886
H+
Sbjct: 1414 TIAHR 1418
|
Length = 1466 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 56/231 (24%), Positives = 87/231 (37%), Gaps = 51/231 (22%)
Query: 709 GAFRPGVLTALMGVTGSGKTTLMDVLAGR--KTRGYI-TGNITISGYPKNQETFTRISGY 765
G+ + ++G G GKTT + +LAG G I T+S P+
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQY---------- 69
Query: 766 CEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSK-TREMFVEEVMELVELNPL--RQALVG 821
I + Y TV + LSS T F E+ + +++ + R+
Sbjct: 70 -----IKADYEGTVRD--------LLSSITKDFYTHPYFKTEIAKPLQIEQILDRE---- 112
Query: 822 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA----RAAAVVMRTVRNTVDTG 877
V LS + +R+ IA L + I +DEP++ LD A+ V+ R N T
Sbjct: 113 ---VPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTA 169
Query: 878 RTVVCTIHQPSI--DIFEAFDAGIPGVSKI-------RDGYNPATWMLEVT 919
V I D F+ G P V+ + R G N L++T
Sbjct: 170 FVVEHDIIMIDYLADRLIVFE-GEPSVNGVANPPQSLRSGMNRFLKNLDIT 219
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 29/195 (14%)
Query: 687 MPQEMKRRGVH-DDKLVLLNGVSGAFRPGVLTALMGVTGSGKT----TLMDVL-AG-RKT 739
MPQ+++ R + L++GVS + G + AL+G +GSGK+ + +L AG R+T
Sbjct: 1 MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 740 RGYITGNITISGYPKNQETFT-RISGYCEQ------NDIHSPYVTVYESLLYSAWLRLSS 792
G + + G P R Q N +H+ + E+ L +
Sbjct: 61 A----GRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDA 116
Query: 793 EVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 852
+ + + +E +++L P +S +R+ IA+ L+ I D
Sbjct: 117 TLTAALEAVGLENAARVLKLYPFE-----------MSGGMLQRMMIALALLCEAPFIIAD 165
Query: 853 EPTSGLDARAAAVVM 867
EPT+ LD A A ++
Sbjct: 166 EPTTDLDVVAQARIL 180
|
Length = 254 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.003
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVV 881
++ +A L +P ++ +DEPT G+D A A + R +R D G+ V+
Sbjct: 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 14/190 (7%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK---TRGYITGNITISG---YPKNQE 757
L VS +TAL+G +G GK+T + L I G ++I G Y + +
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 758 T--FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 815
+ G Q P +++Y+++ Y + N K + VE + L
Sbjct: 88 VVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDE 143
Query: 816 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD 875
+ P ++ LS Q++RL IA L P II DEPTS LD + A + + N +
Sbjct: 144 TSDRLKSPALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN-LK 201
Query: 876 TGRTVVCTIH 885
T+V H
Sbjct: 202 KDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQ 886
LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V H+
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.003
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 3 LLLGPPGSGKTTLMLALAGKL 23
LL GPPG+GKTTL A+A +L
Sbjct: 23 LLYGPPGTGKTTLARAIANEL 43
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 57/233 (24%), Positives = 98/233 (42%), Gaps = 44/233 (18%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQHDIHIG 60
++GP GSGK+TL L G SG V +G D+ ++ + R Y+ Q D+ +
Sbjct: 367 IIGPSGSGKSTLARLLVG---IWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQ-DVELF 422
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
+ T+ E +A R+ +AD + ++A G +
Sbjct: 423 DGTIAENIA----------RFG---------------EEADPEKVIEAARLAG-----VH 452
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
+ IL+ L DT +G+ +SGGQR+R+ L G + +DE ++ LDS
Sbjct: 453 ELILR---LPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGE 508
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
+ ++ G ++ + P D I+++ DG+I GP E V
Sbjct: 509 AALAAAILAAK--ARGGTVVVIAH-RPSALASVDKILVLQDGRIAAFGPREEV 558
|
Length = 580 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDM-----HEFVPQRTAAYISQHDIH 58
L+GP G+GK+TL+ +AG SG + + G + E R AY+SQ
Sbjct: 30 LVGPNGAGKSTLLARMAGM----TSGSGSIQFAGQPLEAWSATELARHR--AYLSQQQTP 83
Query: 59 IGEMTVRETLAFSARCQGVGSRYD 82
M V L + +
Sbjct: 84 PFAMPVWHYLTLHQPDKTRTELLN 107
|
Length = 248 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.004
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTA---AYISQHDIHIG 60
L+GP G+GK+TL+ +AG L SG + + G + + A AY+SQ
Sbjct: 27 LVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPF 82
Query: 61 EMTVRETLAFS----ARCQGVGSRYDMLVEL 87
M V + L R + V S + + E
Sbjct: 83 AMPVFQYLTLHQPDKTRTEAVASALNEVAEA 113
|
Length = 248 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.004
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 836 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 889
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1245 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.98 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.98 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.98 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.98 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.98 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.98 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.98 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.98 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.98 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.98 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.98 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.98 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.98 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.98 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.98 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.98 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.98 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.98 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.98 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.98 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.98 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.98 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.98 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.98 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.98 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.98 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.98 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.98 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.98 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.98 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.98 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.98 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.98 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.98 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.98 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.98 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.98 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.98 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.98 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.98 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.98 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.98 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.98 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.98 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.98 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.97 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.97 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.97 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.97 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.97 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.97 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.97 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.97 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.97 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.97 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.97 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.97 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.97 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.97 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.97 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.97 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.97 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.97 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.97 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.97 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.97 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.97 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.97 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.97 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.97 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.97 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.97 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.97 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.97 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.97 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.97 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.97 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.97 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.97 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.97 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.97 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.97 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.97 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.97 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.97 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.97 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.97 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.97 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.97 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.97 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.97 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.97 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.97 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.97 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.97 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.97 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.97 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.97 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.97 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.97 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.97 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.97 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.97 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.97 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.97 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.97 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.97 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.97 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.97 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.97 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.97 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.97 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.97 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.97 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.97 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.97 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-192 Score=1739.38 Aligned_cols=1181 Identities=52% Similarity=0.907 Sum_probs=1076.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSR 80 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~ 80 (1245)
|+.++||+||||||||++|+|.++......|+|.+||++.++..+++.++|++|+|.|+|.+||||+|.|+++|++++.+
T Consensus 143 m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r 222 (1391)
T KOG0065|consen 143 MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSR 222 (1391)
T ss_pred eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccc
Confidence 58899999999999999999999876666889999999998888888999999999999999999999999999999888
Q ss_pred cchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHHh
Q 000872 81 YDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV 160 (1245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1245)
++ +..+.+++ .+.+|.+++.+||++|+||+||++.+||+||||||||++|++++
T Consensus 223 ~~---~~~R~e~~-----------------------~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v 276 (1391)
T KOG0065|consen 223 YD---EVSRREKL-----------------------AAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLV 276 (1391)
T ss_pred cc---cccHHHHH-----------------------HHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeee
Confidence 76 23333332 12578999999999999999999999999999999999999999
Q ss_pred cCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHHHHHhC
Q 000872 161 GPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240 (1245)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~~f~~~ 240 (1245)
.+++++++||+|+|||+.++.++++.||.+++..+.+.++.++|++++++++||+|++|++|+++|+||.+++.+||+++
T Consensus 277 ~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~ 356 (1391)
T KOG0065|consen 277 GPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDM 356 (1391)
T ss_pred cCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhc
Confidence 99999999999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHHHhcCccchhhhhhcCCCCCccCCHHHHHHHHHhchhhhhhhhhhCCCCCCCCCCCcccccCCCcc
Q 000872 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRKYGV 320 (1245)
Q Consensus 241 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1245)
||.||++++++||++++++..++.+.|.....++...+..++.+.|.+++.+.++..+.+.++++.+.++.......+.+
T Consensus 357 Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v 436 (1391)
T KOG0065|consen 357 GFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSV 436 (1391)
T ss_pred CccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceec
Confidence 99999999999999999998888888877777777778899999999999999999999998888888888888999999
Q ss_pred cHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHHhhHHHHHHh
Q 000872 321 GKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMT 400 (1245)
Q Consensus 321 ~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~li~g~~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~ 400 (1245)
+.|.|++.|+.|++..++||...+.+...+.++++++.|++|++.+. .+..+...+.+++||++.+.++++++++...
T Consensus 437 ~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~ 514 (1391)
T KOG0065|consen 437 PYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALT 514 (1391)
T ss_pred cHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999984 4445567788999999999999999999999
Q ss_pred hhcchhHHHhhhCCCCChhhHHHHHHHHHhhHHHHHHHHHHhhhhhccccccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000872 401 IAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480 (1245)
Q Consensus 401 ~~~~~vf~~er~~~~y~~~~y~la~~~~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~ 480 (1245)
++++|+|+|||+..+|++|++.++.+++++|..++.+.+|.+++||++|+.+++++||.++++.++.+.+++++|+++++
T Consensus 515 ~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~ 594 (1391)
T KOG0065|consen 515 FQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIAS 594 (1391)
T ss_pred HhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHHHhccccCcCCccccchhhhhhCHHHHHHHHHHHhhcCCCcccccCCC------------
Q 000872 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPN------------ 548 (1245)
Q Consensus 481 ~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~isp~~y~~~al~~~ef~~~~~~~~~~~------------ 548 (1245)
++++...|+.++++.++++.+++||+++..+||+||+|++|++|+.|++++++.|||.+.+|.|.+.+
T Consensus 595 l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~ 674 (1391)
T KOG0065|consen 595 LSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKV 674 (1391)
T ss_pred hcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999887221
Q ss_pred ---CCCcchHHHhhhcCcc-----ccCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccccCCC
Q 000872 549 ---KTKPLGIEVLDSRGFF-----TDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSRTGG 620 (1245)
Q Consensus 549 ---~~~~~g~~~l~~~~~~-----~~~~~~~~~~~~l~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1245)
.....|..+++..++. ....|+|+++++++|+.++|.++..+++.++++.......+...+...+.....
T Consensus 675 c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~-- 752 (1391)
T KOG0065|consen 675 CAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKS-- 752 (1391)
T ss_pred chhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchh--
Confidence 1245678888888776 778899999999999999999999999999998776665554443222110000
Q ss_pred ccccccccCCCCccccccchhhhhhccCCCCcccccccCCCccCCCCccCCCCeEEEEEeEEEEEecCccccccccccCc
Q 000872 621 TVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDK 700 (1245)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1245)
...........+....+++++..|..+..++++|+.|.++.|.+++.++ ++
T Consensus 753 --------------------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~ 803 (1391)
T KOG0065|consen 753 --------------------------AGSSSEIEKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GT 803 (1391)
T ss_pred --------------------------ccccccccccccccccccccccCCCccccccccceEEEEeCCccccccc---cc
Confidence 0000000000000111244566677777888999998888887776655 56
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 780 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 780 (1245)
+++|+||||.++||.++|+||.||||||||||+|+||.+.|.++|+|.+||.|.++..++|.+|||+|+|.|.+.+||||
T Consensus 804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrE 883 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRE 883 (1391)
T ss_pred eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHH
Confidence 78999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCC-CeeEEeCCCCCCC
Q 000872 781 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLD 859 (1245)
Q Consensus 781 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p-~il~lDEpTsgLD 859 (1245)
.|.|+|.||+|.+.+.+++.+.||+|++.|+|++++|.+||.++ +|||.+||||++||+||++|| .||||||||||||
T Consensus 884 SL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLD 962 (1391)
T KOG0065|consen 884 SLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLD 962 (1391)
T ss_pred HHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCcc
Confidence 99999999999999999999999999999999999999999998 999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh----------------------------cCCCCccCCCCCCC
Q 000872 860 ARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA----------------------------GIPGVSKIRDGYNP 911 (1245)
Q Consensus 860 ~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~----------------------------~~~~~~~~~~~~np 911 (1245)
++++..|++.+|+++++|+||+||+||||.++|+.||+ ..+|. .|++..||
T Consensus 963 sqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~-~~~~~~NP 1041 (1391)
T KOG0065|consen 963 SQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGV-KCISDENP 1041 (1391)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCc-cCCCCCCh
Confidence 99999999999999999999999999999999999998 11223 45666699
Q ss_pred CccchhcCCchhhhhhhhhHHHHHHhcHHHHHHHHHHHHhcCCCCC-CccccccCCCCChhHHHHHHHHHHHHHHhhcCh
Q 000872 912 ATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKALIQELSKPAPG-SKELYFANQYPLSFFTQCMACLWKQHWSYSRNP 990 (1245)
Q Consensus 912 ad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~ 990 (1245)
|||+||+++...+...+.||++.|++|++++++++.+++++++.++ ..+..+.++|++|+|.|++.++||++..+||+|
T Consensus 1042 A~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp 1121 (1391)
T KOG0065|consen 1042 AEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSP 1121 (1391)
T ss_pred HHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCc
Confidence 9999999998877777889999999999999999999999988877 666777788999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHhHhcCCCCChHH
Q 000872 991 HYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMA 1070 (1245)
Q Consensus 991 ~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~ 1070 (1245)
.|+++|++.+++.||++|++||++|+ ++++++|.+|++|+++++.+..+.....+.+..||.+++||+++|+||+.+
T Consensus 1122 ~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~ 1198 (1391)
T KOG0065|consen 1122 DYLMARFALTIVAGLFIGFTFWKVGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTP 1198 (1391)
T ss_pred HHHHHHHHHHHHHHHhheeeeeecCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHH
Confidence 99999999999999999999999995 578999999999999999988777777788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhhheeeeccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000872 1071 YAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWN 1150 (1245)
Q Consensus 1071 y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 1150 (1245)
|++|++++|+|+.++++++|.+|+|+|+|+.+++.+|++|++.++++.++.+.+|+|+.+++||.++|+.+.+.+++++.
T Consensus 1199 ~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~ 1278 (1391)
T KOG0065|consen 1199 FALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWN 1278 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcCCCCCchhhhHhHhhcHHHHHHHHHHHHhhCCCccccC----------CCCcHHHHHHhhhC----Ccccchh
Q 000872 1151 IVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLE----------SGETVKQFLRSYYG----FKHDFLG 1216 (1245)
Q Consensus 1151 lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~~~~n~f~~~~~~~~----------~~~~~~~~~~~~~~----~~~~~~~ 1216 (1245)
+||||++|++.||.||+|+||+||+.|.+++++..+++|.+..|. +|.++++|+..+|| +.++...
T Consensus 1279 ~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a 1358 (1391)
T KOG0065|consen 1279 LFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLA 1358 (1391)
T ss_pred HhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcc
Confidence 999999999999999999999999999999999999999888774 24589999999999 7777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 000872 1217 AVAAVVFVLPSLFAFVFALGIRVLNFQKR 1245 (1245)
Q Consensus 1217 ~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1245 (1245)
....+..+|.+++.+++.+.++|.++++|
T Consensus 1359 ~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1359 TTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred eeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 66667778999999999999999999876
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-185 Score=1808.28 Aligned_cols=1240 Identities=61% Similarity=1.071 Sum_probs=1058.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSR 80 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~ 80 (1245)
+++|+||||||||||||+|+|+++|+..++|+|.+||+++++...++.++||+|+|.+++++||+||+.|++++++.+.+
T Consensus 193 ~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~ 272 (1470)
T PLN03140 193 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTR 272 (1470)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCc
Confidence 58999999999999999999999876567999999999887665677899999999999999999999999988765444
Q ss_pred cchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHHh
Q 000872 81 YDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV 160 (1245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1245)
++...+..+.++.....++.+.+.++++...++.+.+..++.+++.+||++|+||.||++.+++|||||||||+||++|+
T Consensus 273 ~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~ 352 (1470)
T PLN03140 273 YDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIV 352 (1470)
T ss_pred ccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhc
Confidence 43333334444443344444555555555555556667789999999999999999999999999999999999999999
Q ss_pred cCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHHHHHhC
Q 000872 161 GPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240 (1245)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~~f~~~ 240 (1245)
++|++++|||||+|||+.++.++++.|+++++..+.++++++||+.++++++||+|++|++|+++|+|+.+++.+||+++
T Consensus 353 ~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~l 432 (1470)
T PLN03140 353 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESC 432 (1470)
T ss_pred CCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHc
Confidence 99999999999999999999999999999987556677777788889999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHHHhcCccchhhhhhcCCCCCccCCHHHHHHHHHhchhhhhhhhhhCCCCCCCCCCCcccccCCCcc
Q 000872 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRKYGV 320 (1245)
Q Consensus 241 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1245)
||.||++.|++||+.++.+..+++++|.....+++..+.+++.++|++++.++++.++++.+..+...++.......+..
T Consensus 433 Gf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 512 (1470)
T PLN03140 433 GFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSV 512 (1470)
T ss_pred CCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcC
Confidence 99999999999999999987666555544445555567889999999998887776665544433333333334456888
Q ss_pred cHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHHhhHHHHHHh
Q 000872 321 GKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMT 400 (1245)
Q Consensus 321 ~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~li~g~~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~ 400 (1245)
+++.|++.++.|++..++||+..+..++++.+++++++|++|++++.+.....++..+.|++||.+...+++++.++...
T Consensus 513 s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~ 592 (1470)
T PLN03140 513 PKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALM 592 (1470)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999976655445566778999999988899999999999
Q ss_pred hhcchhHHHhhhCCCCChhhHHHHHHHHHhhHHHHHHHHHHhhhhhccccccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000872 401 IAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAA 480 (1245)
Q Consensus 401 ~~~~~vf~~er~~~~y~~~~y~la~~~~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~ 480 (1245)
+.++|+|+|||+.++|++++|++++++.++|+.++.+++|++++|||+|+++++++||.++++.++..++++++++++++
T Consensus 593 ~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a 672 (1470)
T PLN03140 593 IQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS 672 (1470)
T ss_pred HhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHHHhccccCcCCccccchhhhhhCHHHHHHHHHHHhhcCCCccccc-CCCCCCcchHHHhh
Q 000872 481 VGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKI-LPNKTKPLGIEVLD 559 (1245)
Q Consensus 481 ~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~isp~~y~~~al~~~ef~~~~~~~~-~~~~~~~~g~~~l~ 559 (1245)
+++++.+|+.+++++++++++++||+++.++||.||+|++|+||+.|++++++.|||.+..|.+. +.+.....|.++|+
T Consensus 673 ~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~ 752 (1470)
T PLN03140 673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLN 752 (1470)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988776532 22334578999999
Q ss_pred hcCccccCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccccCCCccccccccCCCCccccccc
Q 000872 560 SRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSES 639 (1245)
Q Consensus 560 ~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1245)
.+++.....|+|.+++++++++++|.+++++++.+.+............................. ..... ... .
T Consensus 753 ~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~-~- 827 (1470)
T PLN03140 753 IFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLS--SADGN-NTR-E- 827 (1470)
T ss_pred hcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccccc--ccccc-ccc-c-
Confidence 999998889999999999999999999999999988754443332211100000000000000000 00000 000 0
Q ss_pred hhhhhhccCCC----CcccccccCCCccCCCCccCCCCeEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCe
Q 000872 640 RDYVRRRNSSS----QSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGV 715 (1245)
Q Consensus 640 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge 715 (1245)
.+......... ..............+++.+|..+..++|+|++|.++.+...++.+...+++.+|+|||++++|||
T Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge 907 (1470)
T PLN03140 828 VAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGV 907 (1470)
T ss_pred ccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCe
Confidence 00000000000 00000000011223445567788899999999999877654444444456689999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCC
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVN 795 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~ 795 (1245)
++||||||||||||||++|+|+.+.|..+|+|.+||.+.+...+++.+|||+|+|.+++.+||+|+|.|++.+|.+.+.+
T Consensus 908 l~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~ 987 (1470)
T PLN03140 908 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVS 987 (1470)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999997766789999999988765556778999999999999999999999999888776666
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000872 796 SKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD 875 (1245)
Q Consensus 796 ~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~ 875 (1245)
.+++.++++++++.+||.+++|+.+|.++.++|||||||||+||++|+++|+||||||||||||+.++..+++.|+++++
T Consensus 988 ~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~ 1067 (1470)
T PLN03140 988 KEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1067 (1470)
T ss_pred HHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 67777889999999999999999999888889999999999999999999999999999999999999999999999998
Q ss_pred CCCEEEEEecCCCHHHHHHhhhc----------------------------CCCCccCCCCCCCCccchhcCCchhhhhh
Q 000872 876 TGRTVVCTIHQPSIDIFEAFDAG----------------------------IPGVSKIRDGYNPATWMLEVTAPSQEIAL 927 (1245)
Q Consensus 876 ~g~tvi~~~H~p~~~~~~~fd~~----------------------------~~~~~~~~~~~npad~~l~~~~~~~~~~~ 927 (1245)
+|+|||+|+|||+.++++.||+. ++|.++||+++|||||++|+++.+.+...
T Consensus 1068 ~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~ 1147 (1470)
T PLN03140 1068 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKL 1147 (1470)
T ss_pred CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccc
Confidence 89999999999999999999971 12344689999999999999987655444
Q ss_pred hhhHHHHHHhcHHHHHHHHHHHHhcCCCCCCccccccCCCCChhHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHH
Q 000872 928 GVDFAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIF 1007 (1245)
Q Consensus 928 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~ 1007 (1245)
..||++.|++|+.+++.++.+++...+.+..++..+.++++.++|+|+++|++|+++++||||.++.+|+++++++|+++
T Consensus 1148 ~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~ 1227 (1470)
T PLN03140 1148 GIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMV 1227 (1470)
T ss_pred cchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHH
Confidence 56899999999999887777776665544444444456789999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHhHhcCCCCChHHHHHHHHHHHHHHHHHhH
Q 000872 1008 GTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQA 1087 (1245)
Q Consensus 1008 g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~ 1087 (1245)
|++||+++++..+++++++++|++|++++++++.++++++|.+..||++|+||+++|+|++.+|++|++++|+|+.++.+
T Consensus 1228 G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~ 1307 (1470)
T PLN03140 1228 GTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQT 1307 (1470)
T ss_pred HHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999877677899999999999999999988889999999999999999999999999999999999999999999
Q ss_pred hhhheeeeccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCcCCCCCchhhh
Q 000872 1088 APYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWR 1167 (1245)
Q Consensus 1088 ~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~ 1167 (1245)
++|++|+|||+||++++++||+|++++++..++++++|+++++++|+.++|..+++++++++++||||++|+++||+||+
T Consensus 1308 ~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~ 1387 (1470)
T PLN03140 1308 TYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWV 1387 (1470)
T ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhcHHHHHHHHHHHHhhCCCccccCC-----CCcHHHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000872 1168 WSYWANPIAWTLYGFFASQFGDVQDRLES-----GETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNF 1242 (1245)
Q Consensus 1168 w~~~~sp~~y~~~~~~~n~f~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1242 (1245)
|+||+||++|+++|++.|||++.+.+|.+ ++++.+|++++|||+++++|++++++++|+++|+++++++++++||
T Consensus 1388 W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1388 WYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred HHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998776543 2467899999999999999999999999999999999999999999
Q ss_pred ccC
Q 000872 1243 QKR 1245 (1245)
Q Consensus 1243 ~~r 1245 (1245)
|||
T Consensus 1468 q~r 1470 (1470)
T PLN03140 1468 QTR 1470 (1470)
T ss_pred ccC
Confidence 998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-163 Score=1611.43 Aligned_cols=1179 Identities=31% Similarity=0.523 Sum_probs=954.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC-CceeeEEEECCccCCCCc--ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSS-LKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~-~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+++|+||||||||||||+|+|+.++. ...+|+|.+||+++++.. .++.++||+|+|.+++++||+||+.|+++++..
T Consensus 89 ~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 168 (1394)
T TIGR00956 89 LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTP 168 (1394)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCC
Confidence 58999999999999999999997421 125999999998875322 345699999999999999999999998876532
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
..... ...+.+. .++.++.+++.+||++++||.||++.+++|||||||||+||+
T Consensus 169 ~~~~~---~~~~~~~-----------------------~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~ 222 (1394)
T TIGR00956 169 QNRPD---GVSREEY-----------------------AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAE 222 (1394)
T ss_pred CCCCC---CCCHHHH-----------------------HHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHH
Confidence 11100 0000000 112346789999999999999999999999999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHHHH
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFF 237 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~~f 237 (1245)
+|+.+|++++|||||+|||+.++.++++.|+++++..+.++++++||++++++++||+|++|++|+++++|+.+++.+||
T Consensus 223 aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF 302 (1394)
T TIGR00956 223 ASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYF 302 (1394)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHH
Confidence 99999999999999999999999999999999987556677777777789999999999999999999999999999999
Q ss_pred HhCCCCCCCCCChhhHHHHhcCccchhhhhhcCCCCCccCCHHHHHHHHHhchhhhhhhhhhCCCCCCC-----------
Q 000872 238 ISMGFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKK----------- 306 (1245)
Q Consensus 238 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 306 (1245)
+++|+.||++.|++||+.++.+.++.. .... .+.....+.+++.+.|++++.++++.++.+....+.
T Consensus 303 ~~lG~~~p~~~n~aDfl~~~~~~~~~~-~~~~-~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1394)
T TIGR00956 303 EKMGFKCPDRQTTADFLTSLTSPAERQ-IKPG-YEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRE 380 (1394)
T ss_pred HHcCCCCCCCCChHHHHHhccChhhhh-cccc-ccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHH
Confidence 999999999999999999998754321 1111 111123457888899988876665544432211100
Q ss_pred ----CCCCcccccCCCcccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHH
Q 000872 307 ----NSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGAL 382 (1245)
Q Consensus 307 ----~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~li~g~~~~~~~~~~~~~~~~~~~~g~~ 382 (1245)
...+.......+..+++.|++.+++|++...+||+..+..++++.+++++++|++|++.+.+.. +...+.|++
T Consensus 381 ~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~---~~~~r~g~l 457 (1394)
T TIGR00956 381 SHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS---DFYSRGGAL 457 (1394)
T ss_pred HHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCch---hHHHHHHHH
Confidence 0000111234577889999999999999999999999999999999999999999999886433 334568899
Q ss_pred HHHHHHHHHhhHHHHHHhhhcchhHHHhhhCCCCChhhHHHHHHHHHhhHHHHHHHHHHhhhhhccccccChhHHHHHHH
Q 000872 383 FFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYL 462 (1245)
Q Consensus 383 f~~~~~~~~~~~~~~~~~~~~~~vf~~er~~~~y~~~~y~la~~~~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~l 462 (1245)
||.+.+.++.++.++...+.++++|+||+..++|++++|++++.+.++|+.++.+++|++++|||+|++.++++|+.+++
T Consensus 458 f~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l 537 (1394)
T TIGR00956 458 FFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLL 537 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHH
Confidence 99999988988888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccccCcCCccccchhhhhhCHHHHHHHHHHHhhcCCCcc
Q 000872 463 LLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSW 542 (1245)
Q Consensus 463 ~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~isp~~y~~~al~~~ef~~~~~ 542 (1245)
+.++...++++++.++++++++...|+.+++++++++++++||+++.++||.||+|++|+||+.|++++++.|||.+..+
T Consensus 538 ~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~ 617 (1394)
T TIGR00956 538 ILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRF 617 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccC--C----------------------CCCCcchHHHhhhcCccccCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000872 543 KKIL--P----------------------NKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPF 598 (1245)
Q Consensus 543 ~~~~--~----------------------~~~~~~g~~~l~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~l~~~~~~ 598 (1245)
.|.. + +.+...|.++|+. ++.....|.|.+++++++++++|.++.++++.+....
T Consensus 618 ~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~ 696 (1394)
T TIGR00956 618 ECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGA 696 (1394)
T ss_pred cccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6631 1 0113467888884 3444566899999999999999999999999987754
Q ss_pred CCCccccccccccccccccCCCccccccccCCCCccccccchhhhhhccCCCCcccccccCCCcc-CCCCccCCCCeEEE
Q 000872 599 GTSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPK-NRGMVLPFEPFSLT 677 (1245)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 677 (1245)
..................... . .. . ......++ ........ ...+..... ............++
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~~-~-~~---~--~~~~~~e~------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ 761 (1394)
T TIGR00956 697 KQKGEILVFRRGSLKRAKKAG-E-TS---A--SNKNDIEA------GEVLGSTD--LTDESDDVNDEKDMEKESGEDIFH 761 (1394)
T ss_pred CCCCceEeeccccccchhhcc-c-cc---c--cccccccc------cccCCCCc--cccccccccccccccccCCCceEE
Confidence 433222222111000000000 0 00 0 00000000 00000000 000000000 00000001123589
Q ss_pred EEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eeEEEEEECCeeCCc
Q 000872 678 FDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYPKNQ 756 (1245)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~-~~~G~i~~~g~~~~~ 756 (1245)
|+|++|.++.. .+++.+|+|||++++|||++||||||||||||||++|+|+.+.+ ..+|+|.+||.+.+.
T Consensus 762 ~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~ 832 (1394)
T TIGR00956 762 WRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS 832 (1394)
T ss_pred EEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh
Confidence 99999887421 13457999999999999999999999999999999999987644 346999999998753
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH
Q 000872 757 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRL 836 (1245)
Q Consensus 757 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~ 836 (1245)
.+++.+|||+|+|.+++.+||+|+|.|++.+|.+.+.++++++++++++++.+||.+++|+.+|.++. +||||||||+
T Consensus 833 -~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl 910 (1394)
T TIGR00956 833 -SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRL 910 (1394)
T ss_pred -hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHH
Confidence 46788999999999999999999999999998776666777788899999999999999999987643 7999999999
Q ss_pred HHHHHHhhCCC-eeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhcC----------------
Q 000872 837 TIAVELVANPS-IIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAGI---------------- 899 (1245)
Q Consensus 837 ~ia~~l~~~p~-il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~~~---------------- 899 (1245)
+||+||+.+|+ ||||||||||||+.++..+++.|++++++|+|||+|+|||+..+++.||+..
T Consensus 911 ~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 99999999997 9999999999999999999999999988899999999999999999999810
Q ss_pred -----------CCCccCCCCCCCCccchhcCCchhhhhhhhhHHHHHHhcHHHHHHHHHHHHhcCCCCCC---ccccccC
Q 000872 900 -----------PGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKALIQELSKPAPGS---KELYFAN 965 (1245)
Q Consensus 900 -----------~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 965 (1245)
.|+.+||+++|||||+||+++...+.....++.+.|++|+.++...+.++....+.... .......
T Consensus 991 ~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1394)
T TIGR00956 991 NSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALS 1070 (1394)
T ss_pred ccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCcccccccccc
Confidence 12346899999999999998865443334589999999988776554444433221111 1111224
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHhhh
Q 000872 966 QYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSS 1045 (1245)
Q Consensus 966 ~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~ 1045 (1245)
+++.|+|+|+++|++|+++++||||.++++|+++++++|+++|++||++++ +++++++|+|++|+.+++.++. +..
T Consensus 1071 ~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~-~~~ 1146 (1394)
T TIGR00956 1071 KYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPL-IQQ 1146 (1394)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 688999999999999999999999999999999999999999999999987 4678999999999988877765 345
Q ss_pred hhhhHHhhhhHH-HhHhcCCCCChHHHHHHHHHHHHHHHHHhHhhhheeeeccccccccHhH-------HHHHHHHHHHH
Q 000872 1046 VQPVVDLERSVF-YREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAK-------FFWFLFFMFFS 1117 (1245)
Q Consensus 1046 ~~~~~~~er~v~-~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~-------f~~f~~~~~~~ 1117 (1245)
.+|.++.||.+| +||+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++.. |++|++++++.
T Consensus 1147 ~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~ 1226 (1394)
T TIGR00956 1147 YLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMF 1226 (1394)
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHH
Confidence 567788888886 8999999999999999999999999999999999999999999988766 99999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCcCCCCCchhhhHhHhhcHHHHHHHHHHHHhhCCCccccCC-
Q 000872 1118 LLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLES- 1196 (1245)
Q Consensus 1118 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~~~~n~f~~~~~~~~~- 1196 (1245)
.++++++|+++++++|+..+|+.+++++++++++||||++++++||+||+|++|+||++|+++|++.|||++.+..|..
T Consensus 1227 ~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~ 1306 (1394)
T TIGR00956 1227 FLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVK 1306 (1394)
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998766632
Q ss_pred ---------CC--------------------------------cHHHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHH
Q 000872 1197 ---------GE--------------------------------TVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFAL 1235 (1245)
Q Consensus 1197 ---------~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~ 1235 (1245)
|. ++.+|+ ..+|++.++.|+|++++++|++++ +++++
T Consensus 1307 e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l-~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~ 1384 (1394)
T TIGR00956 1307 ELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFL-EPISSKYSGRWRNFGIFIAFIFFN-IIATV 1384 (1394)
T ss_pred ccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHH-HHcCCcccccccchhhhhHHHHHH-HHHHH
Confidence 11 233444 467999999999999999999988 77778
Q ss_pred HHHhhccc
Q 000872 1236 GIRVLNFQ 1243 (1245)
Q Consensus 1236 ~l~~~~~~ 1243 (1245)
++.+....
T Consensus 1385 ~l~~~~r~ 1392 (1394)
T TIGR00956 1385 FFYWLARV 1392 (1394)
T ss_pred hhheEEEc
Confidence 88776443
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-95 Score=885.41 Aligned_cols=556 Identities=31% Similarity=0.540 Sum_probs=481.9
Q ss_pred CCeEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eeEEEEEEC
Q 000872 672 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITIS 750 (1245)
Q Consensus 672 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~-~~~G~i~~~ 750 (1245)
.+.++.|+|+++..+.+. ...+++|+||||+++|||++||||||||||||||++|+||...+ ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~--------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKS--------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCC--------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 345789999998875431 13568999999999999999999999999999999999998764 689999999
Q ss_pred CeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 751 GYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 751 g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
|++.+...+++.+|||+|||.+.|++||+|+|.|+|.+|+|...++++++++|++++++|||.+|+|+++|++..||+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999988999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhc---------CC-
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAG---------IP- 900 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~~---------~~- 900 (1245)
||||||+||.+|++||+||||||||||||+.++..++++|+++|++|+|||+|+||||+++|++||+. +.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999992 12
Q ss_pred ------------CCccCCCCCCCCccchhcCCch-hhhhhhhhHHHHHHhc------HHHHHHHHHHHHhcCCCCCCccc
Q 000872 901 ------------GVSKIRDGYNPATWMLEVTAPS-QEIALGVDFAAIYKSS------ELYRINKALIQELSKPAPGSKEL 961 (1245)
Q Consensus 901 ------------~~~~~~~~~npad~~l~~~~~~-~~~~~~~~~~~~~~~s------~~~~~~~~~~~~~~~~~~~~~~~ 961 (1245)
|. +||+..|||||++|+.+.+ .... ..+..+.++.. +...+... ...+.-.....
T Consensus 254 ~~~~~~~ff~~~G~-~~P~~~Npadf~l~l~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~- 327 (613)
T KOG0061|consen 254 SPRELLEFFSSLGF-PCPELENPADFLLDLLSVDSGTRE-LEEAVRIAKLINKFSQTDNLKKTLE---ALEKSLSTSKK- 327 (613)
T ss_pred CHHHHHHHHHhCCC-CCCCcCChHHHHHHHHccCCCchh-HHhHHHHHHHhhhccccchhhhhHH---HHhhhcccccc-
Confidence 22 4899999999999998853 1110 00111111111 00011000 00100000000
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 000872 962 YFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVL 1041 (1245)
Q Consensus 962 ~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~ 1041 (1245)
.+.....+||.|+..+++|.+++.+|||.+...|+++.+.+|+++|++||+++++ ..+++++.|++|+.+.++.+.
T Consensus 328 -~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~g~~~~~~~~~~f~ 403 (613)
T KOG0061|consen 328 -VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND---AKGIQNRLGLFFFILSFMTFL 403 (613)
T ss_pred -cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHHHHHHHHH
Confidence 1111278999999999999999999999999999999999999999999999763 456679999999999999888
Q ss_pred HhhhhhhhHHhhhhHHHhHhcCCCCChHHHHHHHHHHHHHHHHHhHhhhheeeeccccccccHhHHHHHHHHHHHHHHHH
Q 000872 1042 NVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYF 1121 (1245)
Q Consensus 1042 ~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~ 1121 (1245)
++.+.++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|++|+|||+|++++..+|++|++++++..+++
T Consensus 404 ~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a 483 (613)
T KOG0061|consen 404 SMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVA 483 (613)
T ss_pred HHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCcCCCCCchhhhHhHhhcHHHHHHHHHHHHhhCCCccccC-----C
Q 000872 1122 TFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLE-----S 1196 (1245)
Q Consensus 1122 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~~~~n~f~~~~~~~~-----~ 1196 (1245)
+++|+++++..||...|..+++++++.|++|+||+++.++||+||+|++|+|+++|++||++.|||.+....|. +
T Consensus 484 ~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~ 563 (613)
T KOG0061|consen 484 ESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLC 563 (613)
T ss_pred HHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999986333331 1
Q ss_pred CCcHHHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 000872 1197 GETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1245 (1245)
Q Consensus 1197 ~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1245 (1245)
+...++.++..++++..+.|.++.+++++.++|+++++++|++..+.+|
T Consensus 564 ~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 564 CESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred ccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 2223444456799999999999999999999999999999999777654
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-91 Score=864.25 Aligned_cols=559 Identities=24% Similarity=0.403 Sum_probs=462.7
Q ss_pred CCeEEEEEeEEEEEecCc----------------cccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 000872 672 EPFSLTFDEITYSVDMPQ----------------EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 735 (1245)
Q Consensus 672 ~~~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~ 735 (1245)
.+.++.|.+++|.++... ..++..+.++++.+|+|+|++++|||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 367899999999986432 0111122344678999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc
Q 000872 736 GRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 815 (1245)
Q Consensus 736 g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~ 815 (1245)
|+.+++..+|+|.+||.+.... .++.+|||+|+|.+++.+||+|++.|++.++.+...+.++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876544689999999987543 345689999999999999999999999888776555666777889999999999999
Q ss_pred ccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHh
Q 000872 816 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 895 (1245)
Q Consensus 816 ~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~f 895 (1245)
+|+.+|+...++||||||||++||++|+++|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999988888999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred hhcC----------------------CCCccCCCCCCCCccchhcCCchhhh------h---hhhhHHHHHHhcHHHHHH
Q 000872 896 DAGI----------------------PGVSKIRDGYNPATWMLEVTAPSQEI------A---LGVDFAAIYKSSELYRIN 944 (1245)
Q Consensus 896 d~~~----------------------~~~~~~~~~~npad~~l~~~~~~~~~------~---~~~~~~~~~~~s~~~~~~ 944 (1245)
|+.. .|+ .||+++|||||++|+++.+.+. . ......+.|++.. .+..
T Consensus 275 D~iilL~~G~iv~~G~~~~~~~~f~~~G~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 352 (659)
T PLN03211 275 DSVLVLSEGRCLFFGKGSDAMAYFESVGF-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL-APKV 352 (659)
T ss_pred ceEEEecCCcEEEECCHHHHHHHHHHCCC-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc-cHHH
Confidence 9821 122 5899999999999998753210 0 0112233443211 1111
Q ss_pred HHHHHH--hcC-CCC-----CCccc-cccCCCCChhHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCC
Q 000872 945 KALIQE--LSK-PAP-----GSKEL-YFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMG 1015 (1245)
Q Consensus 945 ~~~~~~--~~~-~~~-----~~~~~-~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~ 1015 (1245)
....+. ... ... ..+.. .....+..+||+|+.+|++|++++ |||+.+...|+++++++|+++|++||+++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~ 431 (659)
T PLN03211 353 KAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD 431 (659)
T ss_pred HHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111110 000 000 00000 011235578999999999999988 89999999999999999999999999984
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHhHhcCCCCChHHHHHHHHHHHHHHHHHhHhhhheeee
Q 000872 1016 TKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVY 1095 (1245)
Q Consensus 1016 ~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y 1095 (1245)
..++++|.|++||++++.++.++++.++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|
T Consensus 432 -----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y 506 (659)
T PLN03211 432 -----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTY 506 (659)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 357899999999999998888888888999999999999999999999999999999999999999999999999
Q ss_pred ccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCcCCCCCchhhhHhHhhcHH
Q 000872 1096 AMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPI 1175 (1245)
Q Consensus 1096 ~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~ 1175 (1245)
||+||++++.+||+|++++++..++++++|+++++++|+..+|+.+++++++++++||||+++ +||+||+|++|+||+
T Consensus 507 ~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~ 584 (659)
T PLN03211 507 WMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTT 584 (659)
T ss_pred EcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHH
Confidence 999999999999999999999999999999999999999999999999999999999999997 799999999999999
Q ss_pred HHHHHHHHHHhhCCCc-----cccCCC----CcHHHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000872 1176 AWTLYGFFASQFGDVQ-----DRLESG----ETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNF 1242 (1245)
Q Consensus 1176 ~y~~~~~~~n~f~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1242 (1245)
+|+++|++.|||++.+ .+|... .....+. ...+++....|.++++|++++++|++++|++|++++|
T Consensus 585 ~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 585 FYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFV-EEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIKH 659 (659)
T ss_pred HHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccc-hhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999998653 245321 0111122 2334445568999999999999999999999998876
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-91 Score=867.76 Aligned_cols=543 Identities=30% Similarity=0.476 Sum_probs=476.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eeEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 000872 700 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTV 778 (1245)
Q Consensus 700 ~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv 778 (1245)
++.+|+|+|++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.+...+++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999987653 3589999999988766678889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC-CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCC
Q 000872 779 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 857 (1245)
Q Consensus 779 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~-~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsg 857 (1245)
+||+.|++.++.+.+...++++++++++++.+||.+++|+.+|+++ .++||||||||++||+||+++|++++|||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999999988777777888899999999999999999999864 678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhcC---C------CC------------ccCCCCCCCCccch
Q 000872 858 LDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAGI---P------GV------------SKIRDGYNPATWML 916 (1245)
Q Consensus 858 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~~~---~------~~------------~~~~~~~npad~~l 916 (1245)
||+.++..+++.|++++++|+|||+++|||+.+++++||+.. . |. ..||++.|||||++
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~ 276 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYV 276 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 999999999999999988899999999999999999999921 1 10 25899999999999
Q ss_pred hcCCchhhhh-----hhhhHHHHHHhcHHHHHHHHHHHHhcCCCC---CCccccccCCCCChhHHHHHHHHHHHHHHhhc
Q 000872 917 EVTAPSQEIA-----LGVDFAAIYKSSELYRINKALIQELSKPAP---GSKELYFANQYPLSFFTQCMACLWKQHWSYSR 988 (1245)
Q Consensus 917 ~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R 988 (1245)
|+++.+.+.+ ...++.+.|++++.+++..+.......... ..........+..+|+.|+..+++|++++.||
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R 356 (617)
T TIGR00955 277 QVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLR 356 (617)
T ss_pred HHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhc
Confidence 9987543211 123455667766655443332221111110 01111122456789999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHhHhcCCCCCh
Q 000872 989 NPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSP 1068 (1245)
Q Consensus 989 ~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~ 1068 (1245)
||.++..|+++++++|+++|++||++++ ++++++++.|++|++++++++.++....+.++.||++|+||+.+|+|++
T Consensus 357 ~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~ 433 (617)
T TIGR00955 357 DPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRV 433 (617)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCH
Confidence 9999999999999999999999999986 4578899999999999998888887888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhheeeeccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000872 1069 MAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGL 1148 (1245)
Q Consensus 1069 ~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 1148 (1245)
++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|++++++..++++++|+++++++|+..+|+.++++++++
T Consensus 434 ~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~ 513 (617)
T TIGR00955 434 SAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIP 513 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcCCCCCchhhhHhHhhcHHHHHHHHHHHHhhCCCcc-ccCC------CCcHHHHHHhhhCCcccchhHHHHH
Q 000872 1149 WNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQD-RLES------GETVKQFLRSYYGFKHDFLGAVAAV 1221 (1245)
Q Consensus 1149 ~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~~~~n~f~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i 1221 (1245)
+++|+||+++.++||+||+|++|+||++|+++|++.|||.+.++ +|.. ++..++++++.||++.++.|+++++
T Consensus 514 ~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~i 593 (617)
T TIGR00955 514 FLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIG 593 (617)
T ss_pred HHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHHH
Confidence 99999999999999999999999999999999999999998765 5642 1122577778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccC
Q 000872 1222 VFVLPSLFAFVFALGIRVLNFQKR 1245 (1245)
Q Consensus 1222 l~~~~~~~~~~~~~~l~~~~~~~r 1245 (1245)
|++|.++|+++++++|++..+++|
T Consensus 594 l~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 594 LVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999877776
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-88 Score=896.66 Aligned_cols=565 Identities=23% Similarity=0.388 Sum_probs=482.9
Q ss_pred CeEEEEEeEEEEEecCcc-------------cc----c--cccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHH
Q 000872 673 PFSLTFDEITYSVDMPQE-------------MK----R--RGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDV 733 (1245)
Q Consensus 673 ~~~l~~~~~~~~~~~~~~-------------~~----~--~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~ 733 (1245)
...+.|+|++........ .. . .+....++.+|+|+|+.++|||++||+||||||||||||+
T Consensus 27 ~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~ 106 (1394)
T TIGR00956 27 KLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKT 106 (1394)
T ss_pred eeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence 567899999877622110 00 0 0122345679999999999999999999999999999999
Q ss_pred HhCCCCC--CeeEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC----CCHHHHHH-HHH
Q 000872 734 LAGRKTR--GYITGNITISGYPKNQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSE----VNSKTREM-FVE 804 (1245)
Q Consensus 734 L~g~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~----~~~~~~~~-~v~ 804 (1245)
|+|+... .+.+|+|.+||.+.+. ..+++.++|++|+|.+++.+||+|+|.|++.+|.+.. .+++++++ .++
T Consensus 107 LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (1394)
T TIGR00956 107 IASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIAD 186 (1394)
T ss_pred HhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Confidence 9998532 2468999999987643 2355679999999999999999999999998886532 23444333 357
Q ss_pred HHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q 000872 805 EVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCT 883 (1245)
Q Consensus 805 ~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~ 883 (1245)
++++.+||.+++|+.+|++.+++|||||||||+||++|+++|+|++|||||+|||+.++..+++.|++++++ |+|||++
T Consensus 187 ~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~ 266 (1394)
T TIGR00956 187 VYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVA 266 (1394)
T ss_pred HHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 789999999999999999889999999999999999999999999999999999999999999999999864 8999999
Q ss_pred ecCCCHHHHHHhhhcC---------C-------------CCccCCCCCCCCccchhcCCchhhh----------hhhhhH
Q 000872 884 IHQPSIDIFEAFDAGI---------P-------------GVSKIRDGYNPATWMLEVTAPSQEI----------ALGVDF 931 (1245)
Q Consensus 884 ~H~p~~~~~~~fd~~~---------~-------------~~~~~~~~~npad~~l~~~~~~~~~----------~~~~~~ 931 (1245)
+|||+.++++.||+.. . |+ .||++.|||||++|+++++.+. ....++
T Consensus 267 ~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~ 345 (1394)
T TIGR00956 267 IYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEF 345 (1394)
T ss_pred ecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCC-CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHH
Confidence 9999999999999821 1 22 5899999999999998865321 123578
Q ss_pred HHHHHhcHHHHHHHHHHHHhcCCC---------------CCCccccccCCCCChhHHHHHHHHHHHHHHhhcChhHHHHH
Q 000872 932 AAIYKSSELYRINKALIQELSKPA---------------PGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVR 996 (1245)
Q Consensus 932 ~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~ 996 (1245)
++.|++|+.+++..+.++...... ...+.......+..|+|+|+++|++|+++++||||.+++.|
T Consensus 346 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r 425 (1394)
T TIGR00956 346 ETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFM 425 (1394)
T ss_pred HHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999988776554443321110 00011112345788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHhHhcCCCCChHHHHHHHH
Q 000872 997 FLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQV 1076 (1245)
Q Consensus 997 ~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~ 1076 (1245)
+++++++|+++|++||++++ ++.++++|.|++||++++.++.++.++ +.+..||+||+||+.+|+|++++|++|++
T Consensus 426 ~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~ 501 (1394)
T TIGR00956 426 VFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASI 501 (1394)
T ss_pred HHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHH
Confidence 99999999999999999986 356789999999999999999887776 45567999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhheeeeccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC
Q 000872 1077 LIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFI 1156 (1245)
Q Consensus 1077 ~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~ 1156 (1245)
++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..+|+.+++++++++++|+||+
T Consensus 502 l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~ 581 (1394)
T TIGR00956 502 ISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFA 581 (1394)
T ss_pred HHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhHhHhhcHHHHHHHHHHHHhhCCCccccCC-------------------------C---CcHHHHHHhhh
Q 000872 1157 IPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLES-------------------------G---ETVKQFLRSYY 1208 (1245)
Q Consensus 1157 ~~~~~ip~~~~w~~~~sp~~y~~~~~~~n~f~~~~~~~~~-------------------------~---~~~~~~~~~~~ 1208 (1245)
+|.++||+||+|++|+||++|+|||++.|||++..++|.. | .++.+|+...|
T Consensus 582 i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~ 661 (1394)
T TIGR00956 582 IPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSF 661 (1394)
T ss_pred cChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcC
Confidence 9999999999999999999999999999999988877731 0 14568888789
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000872 1209 GFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNF 1242 (1245)
Q Consensus 1209 ~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1242 (1245)
|++.+|+|+|++||++|+++|+++++++++|+++
T Consensus 662 ~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 662 QYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-87 Score=880.17 Aligned_cols=568 Identities=23% Similarity=0.372 Sum_probs=475.8
Q ss_pred CCeEEEEEeEEEEEecCcc-----------------ccc-cc---cccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHH
Q 000872 672 EPFSLTFDEITYSVDMPQE-----------------MKR-RG---VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTL 730 (1245)
Q Consensus 672 ~~~~l~~~~~~~~~~~~~~-----------------~~~-~~---~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTL 730 (1245)
+...+.|+|+++..+.... ... .+ ..+.++.+|+|+||.++|||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 4567899999887652110 000 00 11235679999999999999999999999999999
Q ss_pred HHHHhCCCCCC-eeEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-------CCHHHH---
Q 000872 731 MDVLAGRKTRG-YITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSE-------VNSKTR--- 799 (1245)
Q Consensus 731 l~~L~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~-------~~~~~~--- 799 (1245)
|++|+|+.++. .++|+|.+||.+.++...++.++||+|+|.|++.+||+|+|.|++.++.+.. ...+++
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 99999986542 4689999999987554446789999999999999999999999998764321 111111
Q ss_pred ---------------------HHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCC
Q 000872 800 ---------------------EMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858 (1245)
Q Consensus 800 ---------------------~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgL 858 (1245)
+..++++++.+||.+|+||.+|+...+++||||||||+||++|+++|+++||||||+||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 12367899999999999999999989999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhhcC---------C-------------CCccCCCCCCCCccc
Q 000872 859 DARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDAGI---------P-------------GVSKIRDGYNPATWM 915 (1245)
Q Consensus 859 D~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~~~---------~-------------~~~~~~~~~npad~~ 915 (1245)
|+.++..+++.|+++++ .|+|||+++|||+.+++++||+.+ . |+ .||++.|||||+
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf-~cP~~~n~ADFl 446 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGF-KCPERKGTADFL 446 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCC-CCCCCCChHHHH
Confidence 99999999999999986 489999999999999999999821 1 22 589999999999
Q ss_pred hhcCCchhh-h-----------hhhhhHHHHHHhcHHHHHHHHHHHHhcCCCCCCccccccCCCCChhHHHHHHHHHHHH
Q 000872 916 LEVTAPSQE-I-----------ALGVDFAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQH 983 (1245)
Q Consensus 916 l~~~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~ 983 (1245)
+|++++.+. . ....++++.|++|+.+++..+.++.........+.....+.|..+++.|++.|++|++
T Consensus 447 ~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~ 526 (1470)
T PLN03140 447 QEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEW 526 (1470)
T ss_pred HHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHH
Confidence 999986432 1 1134688899999877655433322110000011111234588999999999999999
Q ss_pred HHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHhHhcC
Q 000872 984 WSYSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGA 1063 (1245)
Q Consensus 984 ~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~ 1063 (1245)
+.++|||.++..|+++.+++|+++|++||+++.+..+..+.+.+.|++||++++.++.++.++ +.++.||+||+|||.+
T Consensus 527 ~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l-~~~~~~r~vf~ker~~ 605 (1470)
T PLN03140 527 LLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAEL-ALMIQRLPVFYKQRDL 605 (1470)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccchhHHhhhc
Confidence 999999999999999999999999999999986544445567788999999988888776554 6778999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhHhhhheeeeccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000872 1064 GMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVST 1143 (1245)
Q Consensus 1064 ~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 1143 (1245)
++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..+|+.+++
T Consensus 606 ~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~ 685 (1470)
T PLN03140 606 LFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGA 685 (1470)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcCCCCCchhhhHhHhhcHHHHHHHHHHHHhhCCCcccc-CC---CCcHHHHHHhhhCCccc--chhH
Q 000872 1144 LFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRL-ES---GETVKQFLRSYYGFKHD--FLGA 1217 (1245)
Q Consensus 1144 ~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~~~~n~f~~~~~~~-~~---~~~~~~~~~~~~~~~~~--~~~~ 1217 (1245)
++++++++|+||++|.++||+||+|++|+||++|+++|+++|||.+..+.+ .+ ..+.|+.+++.+|+..+ |+|+
T Consensus 686 ~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~ 765 (1470)
T PLN03140 686 LVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWI 765 (1470)
T ss_pred HHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhh
Confidence 999999999999999999999999999999999999999999997765431 11 22345555588999754 6799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 000872 1218 VAAVVFVLPSLFAFVFALGIRVLN 1241 (1245)
Q Consensus 1218 ~~~il~~~~~~~~~~~~~~l~~~~ 1241 (1245)
++++|+||+++|+++++++|++++
T Consensus 766 ~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 766 GVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999987
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-82 Score=774.58 Aligned_cols=542 Identities=25% Similarity=0.456 Sum_probs=477.4
Q ss_pred CcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eeEEEEEECCeeCCcccccceEEEEccCCCCCCCCC
Q 000872 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYPKNQETFTRISGYCEQNDIHSPYVT 777 (1245)
Q Consensus 699 ~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lt 777 (1245)
....+|+|+||.++|||++.++||+||||||||++|+|..+.. ...|+|.+||++.++..-++.++|++|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3457999999999999999999999999999999999976532 346799999998776444788999999999999999
Q ss_pred HHHHHHHHHHhcCCCC----CCHHHHH-HHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEe
Q 000872 778 VYESLLYSAWLRLSSE----VNSKTRE-MFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 852 (1245)
Q Consensus 778 v~e~l~~~~~lr~~~~----~~~~~~~-~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lD 852 (1245)
|||+|.|+++++.+.. ..+.++. +.++.+++.+||.+|+||++|+...||+||||||||++|.+++.+|+++|+|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999998733 2222222 2678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhcC---C------C--------C----ccCCCCCC
Q 000872 853 EPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDAGI---P------G--------V----SKIRDGYN 910 (1245)
Q Consensus 853 EpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~~~---~------~--------~----~~~~~~~n 910 (1245)
|+|+|||+.|+.++++.||++++. +.|+++++|||++++|++||+.+ . | + -.||+..+
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccC
Confidence 999999999999999999999865 88999999999999999999932 1 1 1 15899999
Q ss_pred CCccchhcCCchhhh-----------h-hhhhHHHHHHhcHHHHHHHHHHHHhcCCCCCCccccccCCCCChhHHHHHHH
Q 000872 911 PATWMLEVTAPSQEI-----------A-LGVDFAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMAC 978 (1245)
Q Consensus 911 pad~~l~~~~~~~~~-----------~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l 978 (1245)
+|||+.++++..++. . ...++.+.|.+|+.+++.....+.........+.......|..|+|.|++.|
T Consensus 366 ~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c 445 (1391)
T KOG0065|consen 366 TADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKAC 445 (1391)
T ss_pred HHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHH
Confidence 999999999832211 0 1257899999999888765544332222222233334567899999999999
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHH
Q 000872 979 LWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFY 1058 (1245)
Q Consensus 979 ~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~ 1058 (1245)
+.|.++.+.||..++..++++.+++|+++|++|++.+- .+..+.+.|.|++||++++..+.++.++ +...+.||||+
T Consensus 446 ~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~~~~pv~~ 522 (1391)
T KOG0065|consen 446 TIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTFQRLPVFY 522 (1391)
T ss_pred HHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHHhhcchHH
Confidence 99999999999999999999999999999999999982 3556788999999999999999988887 44557899999
Q ss_pred hHhcCCCCChHHHHHHHHHHHHHHHHHhHhhhheeeeccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 000872 1059 REKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIA 1138 (1245)
Q Consensus 1059 rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a 1138 (1245)
|||...+|+|++|.++.+++++|+.++.+++|.+|.||++||.+++++||.|++++++...+++++++++++++++...|
T Consensus 523 Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~A 602 (1391)
T KOG0065|consen 523 KHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIA 602 (1391)
T ss_pred HhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcCCCCCchhhhHhHhhcHHHHHHHHHHHHhhCCCccccCC-CC-------------------
Q 000872 1139 SIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLES-GE------------------- 1198 (1245)
Q Consensus 1139 ~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~~~~n~f~~~~~~~~~-~~------------------- 1198 (1245)
+.++++.+++..+++||++|.++||+||+|++|+||+.|++|++++|||++.+.+|++ ||
T Consensus 603 n~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~ 682 (1391)
T KOG0065|consen 603 NLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATL 682 (1391)
T ss_pred hhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhcccc
Confidence 9999999999999999999999999999999999999999999999999999998861 10
Q ss_pred -----cHHHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000872 1199 -----TVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQ 1243 (1245)
Q Consensus 1199 -----~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 1243 (1245)
.+.+|++..|++++.|.|+++||++||.++|.++..+++.|++.-
T Consensus 683 G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 683 GNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred CceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 345788888999999999999999999999999999999998853
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-70 Score=668.77 Aligned_cols=548 Identities=28% Similarity=0.500 Sum_probs=455.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSR 80 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~ 80 (1245)
++||||||||||||||++|+|+.+++..++|+|++||++......++.+|||.|+|.+++++||+|++.|.++++.+.+
T Consensus 58 l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~- 136 (613)
T KOG0061|consen 58 LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS- 136 (613)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-
Confidence 5899999999999999999999987557899999999887777778899999999999999999999999998875321
Q ss_pred cchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHHh
Q 000872 81 YDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV 160 (1245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1245)
... ++.+.++|+++++|||.+|+||+||+...|++||||||||+||..|+
T Consensus 137 ------~~~------------------------~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell 186 (613)
T KOG0061|consen 137 ------LSK------------------------EEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELL 186 (613)
T ss_pred ------CCH------------------------HHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHH
Confidence 111 12345789999999999999999999888999999999999999999
Q ss_pred cCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHHHHHhC
Q 000872 161 GPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240 (1245)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~~f~~~ 240 (1245)
.||+||+|||||||||+.++.++++.|+++|+. |+++|++||||+.+++++||++++|++|+++|+|+++++.++|+++
T Consensus 187 ~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~ 265 (613)
T KOG0061|consen 187 TDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSL 265 (613)
T ss_pred cCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhC
Confidence 999999999999999999999999999999986 8999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHHHhcCccchhhhhhcCCCCCccCCHHHHHHHHHhchhhhhhhhhhCCCCCCCCCCCcccccCCCcc
Q 000872 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRKYGV 320 (1245)
Q Consensus 241 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1245)
|++||++.||+||+.++.+.++..+...+.. ......+.++..+...+........... ..........
T Consensus 266 G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 334 (613)
T KOG0061|consen 266 GFPCPELENPADFLLDLLSVDSGTRELEEAV------RIAKLINKFSQTDNLKKTLEALEKSLST-----SKKVEIGTSP 334 (613)
T ss_pred CCCCCCcCChHHHHHHHHccCCCchhHHhHH------HHHHHhhhccccchhhhhHHHHhhhccc-----ccccccccCC
Confidence 9999999999999999877431110000000 0000000000000000000000000000 0000011167
Q ss_pred cHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHHhhHH-HHHH
Q 000872 321 GKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMA-EISM 399 (1245)
Q Consensus 321 ~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~li~g~~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~-~~~~ 399 (1245)
+++.|+..+++|.+...+|++.+...++.+.+.+++++|.+|++.+.+.... ....|++++.+....+..+. .+..
T Consensus 335 s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~g~~~~~~~~~~f~~~~~~i~~ 411 (613)
T KOG0061|consen 335 SWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGI---QNRLGLFFFILSFMTFLSMFGAVPV 411 (613)
T ss_pred cHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 8999999999999999999999999999999999999999999986544322 35577778877777666655 5777
Q ss_pred hhhcchhHHHhhhCCCCChhhHHHHHHHHHhhHHHHHHHHHHhhhhhccccccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000872 400 TIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIA 479 (1245)
Q Consensus 400 ~~~~~~vf~~er~~~~y~~~~y~la~~~~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~i~ 479 (1245)
...++++|.||+..++|+.++|++++.+.++|+.++.+++|+.++|||+|++++..+|+.+.+..++....+++++.+++
T Consensus 412 f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~ 491 (613)
T KOG0061|consen 412 FPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFIS 491 (613)
T ss_pred hHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHhccccCcCCccccchhhhhhCHHHHHHHHHHHhhcCCCcccccCC--CCCCcchHHH
Q 000872 480 AVGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILP--NKTKPLGIEV 557 (1245)
Q Consensus 480 ~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~isp~~y~~~al~~~ef~~~~~~~~~~--~~~~~~g~~~ 557 (1245)
++.++...+..+++++.+.+++++||+++.+.+|.||+|+.|+|..+|++++++.|+|.+....|... ..+...+.++
T Consensus 492 ~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 571 (613)
T KOG0061|consen 492 AIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDV 571 (613)
T ss_pred HhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999733333222 3456678888
Q ss_pred hhhcCccccCcchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000872 558 LDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLN 596 (1245)
Q Consensus 558 l~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~l~~~~ 596 (1245)
++..++... ..|.++.++.++++++.+..++++.+..
T Consensus 572 l~~~~~~~~--~~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 572 LKQLGFEDS--SFWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred HHhcCCccc--ccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888777544 4588899999999999999999887643
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-71 Score=695.87 Aligned_cols=739 Identities=20% Similarity=0.261 Sum_probs=406.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSR 80 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~ 80 (1245)
++||+|+.||||||||.+|+|+++.. +|+|.++| .++||||++| +.+.||||||.|+..++ .++
T Consensus 549 lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pW-I~ngTvreNILFG~~~d--~~r 612 (1381)
T KOG0054|consen 549 LVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPW-IQNGTVRENILFGSPYD--EER 612 (1381)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccH-hhCCcHHHhhhcCcccc--HHH
Confidence 47999999999999999999999865 99999999 4899999887 55789999999998765 479
Q ss_pred cchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHHh
Q 000872 81 YDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV 160 (1245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1245)
|+.+.++|.+++|.+.+|++| .|.||++++ +||||||||+++|||+|
T Consensus 613 Y~~Vi~aC~L~~Dle~Lp~GD--------------------------------~TeIGErGi-nLSGGQKqRIsLARAVY 659 (1381)
T KOG0054|consen 613 YDKVIKACALKKDLEILPFGD--------------------------------LTEIGERGI-NLSGGQKQRISLARAVY 659 (1381)
T ss_pred HHHHHHHccCHhHHhhcCCCC--------------------------------cceecCCcc-CCcHhHHHHHHHHHHHh
Confidence 999999999999999998888 499999988 59999999999999999
Q ss_pred cCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH---HH
Q 000872 161 GPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ---FF 237 (1245)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~---~f 237 (1245)
+++||++||+|+|++|+++..++++.+- ....+++|+|.+|| .-+..+.+|+|++|++|+|...|+++|+.+ .|
T Consensus 660 ~~adIYLLDDplSAVDahvg~~if~~ci--~~~L~~KT~ILVTH-ql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~ 736 (1381)
T KOG0054|consen 660 QDADIYLLDDPLSAVDAHVGKHIFEECI--RGLLRGKTVILVTH-QLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDF 736 (1381)
T ss_pred ccCCEEEEcCcchhhhHhhhHHHHHHHH--HhhhcCCEEEEEeC-chhhhhhCCEEEEecCCeEecccCHHHHHhcchhH
Confidence 9999999999999999999999998775 33456778888888 457778899999999999999999999863 12
Q ss_pred HhCCCCCCCCCChhhHHHHhcCccchhhhh-hcCCCCCccCCHHHHHHHHHhchhhhhhhhhhCCCCCCCCCCCcccccC
Q 000872 238 ISMGFKCPKRKGIADFLQEVTSRKDQEQYW-VRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTR 316 (1245)
Q Consensus 238 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1245)
.++ ....+.++.. .............+.. . +.... .+...+...............+.+
T Consensus 737 ~~l-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~ee~ 796 (1381)
T KOG0054|consen 737 AEL-----------------AHEEESEQEEEASEKDLESGESSRESE-S-RSLES-LSSEEEKSKDEKEEEDKLVQEEER 796 (1381)
T ss_pred HHH-----------------hhccchhhccccccccccccccccchh-h-hhhhh-hcccccccccccchhhHHHHHHHH
Confidence 111 0000000000 0000000000000000 0 00000 000000000000000000001111
Q ss_pred CCcccHHHHHHHHHHHHHHHHhcChHH-HHH-HHHHHHH-HHHHHHHHhccccCCCCCc-----ccccchhhHHHHH---
Q 000872 317 KYGVGKKELLKACFSREHLLMKRNSFV-YIF-RLTQVMF-LAVIGMTIFLRTKMHRDSL-----TDGVIYTGALFFI--- 385 (1245)
Q Consensus 317 ~~~~~~~~~~~~~~~r~~~~~~r~~~~-~~~-~~~~~~~-~~li~g~~~~~~~~~~~~~-----~~~~~~~g~~f~~--- 385 (1245)
..+.-.+..++.+++.. ..+. ..+ .+..... ...+...+|+..+.+.... .+...+.+.....
T Consensus 797 ~~G~v~~~vY~~Y~~a~------~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~ 870 (1381)
T KOG0054|consen 797 ETGKVSWSVYKKYIKAA------GGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVA 870 (1381)
T ss_pred hcCEeeHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHH
Confidence 22333333333332210 1111 111 1111112 2223344555554433211 0111122211111
Q ss_pred -HHHHHHhhHHHHHHhhhcchhHHHhhhCCCCChhhHHHHHHHHHhhHHHHHHHHHHhhhhhccccccC-hhHHHHHH--
Q 000872 386 -LTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSN-AGRFFKQY-- 461 (1245)
Q Consensus 386 -~~~~~~~~~~~~~~~~~~~~vf~~er~~~~y~~~~y~la~~~~~lp~~~~~~~i~~~i~y~~~gl~~~-~~~f~~~~-- 461 (1245)
.....+.++......+.... ...--+...+...|+++ |+.+ .||.++++
T Consensus 871 ~~~~~~~rs~~~~~~~l~aS~------------~Lh~~ml~~Ilrapm~F---------------FdtTP~GRILNRFSk 923 (1381)
T KOG0054|consen 871 SSLLTLLRSFLFAKGGLKASR------------KLHDKLLNSILRAPMSF---------------FDTTPTGRILNRFSK 923 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhCcchh---------------cCCCCccchhhhccc
Confidence 11111111111111100000 01112333444555555 4444 25544443
Q ss_pred -------HHHHHHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHhccccCcCCccccchhhhhhCHHHHHHH
Q 000872 462 -------LLLLIVNQMSSAMFRLIAAVG----RSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQN 530 (1245)
Q Consensus 462 -------l~~~~~~~~~~~~~~~i~~~~----~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~isp~~y~~~ 530 (1245)
.+......+...+..+++.+. .++.....+.++.++..++-.-|.....++++.- ....||++-.+.
T Consensus 924 D~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLe--sitRSPi~sh~~ 1001 (1381)
T KOG0054|consen 924 DIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLE--SITRSPIYSHFS 1001 (1381)
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh--hcccchHHHhHH
Confidence 222223333333332222221 1222222222222221111111111111111110 012344443332
Q ss_pred HHHHhhcCCCcccccCCCCCCcchHHHhhhcCcc------ccCcchhHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 000872 531 AIVVNEFLGNSWKKILPNKTKPLGIEVLDSRGFF------TDAYWYWLGVGA-LTGFIILFQFGFTLALSFLNPFGTSKA 603 (1245)
Q Consensus 531 al~~~ef~~~~~~~~~~~~~~~~g~~~l~~~~~~------~~~~~~~~~~~~-l~~~~i~~~~~~~~~l~~~~~~~~~~~ 603 (1245)
.-+..--.-+.+ +.....-.+.....+.+ ......|+.+.. +++..+++.++....+........+..
T Consensus 1002 Etl~GlsTIRAf-----~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~v 1076 (1381)
T KOG0054|consen 1002 ETLQGLSTIRAF-----GKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLV 1076 (1381)
T ss_pred HHhcCcceeeec-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchH
Confidence 222110000000 00000000111111111 111124666554 233333333333322222111111110
Q ss_pred c--cccccccccccccCCCccccccccCCCCccccccchhhhhhccCCCCcccccccCCCccCCCCccCCCCeEEEEEeE
Q 000872 604 F--ISEESQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFDEI 681 (1245)
Q Consensus 604 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 681 (1245)
. +++.-..... .... ++ ..+......+..++..+|....++..+..+...++..|+..| .++|+|+
T Consensus 1077 GLslsyal~lt~~--l~~~-vR-~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G--------~I~f~~~ 1144 (1381)
T KOG0054|consen 1077 GLSLSYALQLTGL--LQWL-VR-QSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKG--------EIEFEDL 1144 (1381)
T ss_pred HHHHHHHHHHHHH--HHHH-HH-HHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCC--------eEEEEEe
Confidence 0 1110000000 0000 00 000000011123334455443333111111111334444444 7999999
Q ss_pred EEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc---cc
Q 000872 682 TYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ET 758 (1245)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~---~~ 758 (1245)
+.+|.. +...+|||||++|+|||++||+|++|||||||+++|.+..++ .+|+|.|||.++.+ .+
T Consensus 1145 ~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~--~~G~I~IDgvdI~~igL~d 1211 (1381)
T KOG0054|consen 1145 SLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP--AEGEILIDGVDISKIGLHD 1211 (1381)
T ss_pred EEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc--cCCeEEEcCeecccccHHH
Confidence 887742 334699999999999999999999999999999999997664 48999999999876 46
Q ss_pred ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccccc------CCCCCcCCHHH
Q 000872 759 FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG------LPGVNGLSTEQ 832 (1245)
Q Consensus 759 ~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g------~~~~~~lSgGe 832 (1245)
+|++.+.+|||+.++.. |+|.|| |+..+..++.++++|+..+|.+...+..+ .+++.++|-||
T Consensus 1212 LRsrlsIIPQdPvLFsG-TvR~NL----------DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQ 1280 (1381)
T KOG0054|consen 1212 LRSRLSIIPQDPVLFSG-TVRFNL----------DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQ 1280 (1381)
T ss_pred HHhcCeeeCCCCceecC-cccccc----------CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHH
Confidence 78889999999988753 666665 67777788889999999998876544332 13456799999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 833 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 833 rqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
||.+|+||||+++++||+|||+|+++|++|+..|+++||+.++ +||||+++|+.+
T Consensus 1281 RQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~ 1335 (1381)
T KOG0054|consen 1281 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLN 1335 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccc
Confidence 9999999999999999999999999999999999999999875 799999999876
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-69 Score=674.11 Aligned_cols=551 Identities=27% Similarity=0.429 Sum_probs=452.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSR 80 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~ 80 (1245)
+++|+|||||||||||++|+|+.+++...+|+|.+||.+++....++.++||+|+|.+++++||+|||.|+++++.....
T Consensus 53 ~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 132 (617)
T TIGR00955 53 LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRV 132 (617)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCC
Confidence 58999999999999999999998875456899999999876545567899999999999999999999999876532111
Q ss_pred cchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCcc-ccccccccchhhHHHHHH
Q 000872 81 YDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEM-LRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~-~~~LSGGqrqRv~ia~al 159 (1245)
.+. +.+..++++++.+||++++||.||+++ .++||||||||++||++|
T Consensus 133 -------~~~------------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL 181 (617)
T TIGR00955 133 -------TKK------------------------EKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASEL 181 (617)
T ss_pred -------CHH------------------------HHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHH
Confidence 000 112347889999999999999999864 678999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHHHHHh
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFIS 239 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~~f~~ 239 (1245)
+++|++++|||||+|||+.++.++++.|+++++ .+.++|+++||++.++.+.||++++|++|+++|+|+++++.+||++
T Consensus 182 ~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~ 260 (617)
T TIGR00955 182 LTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSD 260 (617)
T ss_pred HcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHH
Confidence 999999999999999999999999999999986 3667777777777899999999999999999999999999999999
Q ss_pred CCCCCCCCCChhhHHHHhcCccchhhhhhcCCCCCccCCHHHHHHHHHhchhhhhhhhhhCCCCCCC---CCCCcccccC
Q 000872 240 MGFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKK---NSHPAALTTR 316 (1245)
Q Consensus 240 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 316 (1245)
+|++||++.|++|++.++.+.....+. ......+++.+.++.++..++............ ..........
T Consensus 261 ~g~~~p~~~n~ad~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (617)
T TIGR00955 261 LGHPCPENYNPADFYVQVLAVIPGSEN-------ESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGI 333 (617)
T ss_pred cCCCCCCCCChHHHHHHHhhcCccccc-------chHHHHHHHHHHHhcchhhHHHHHHhhhhhcccccccccccccccc
Confidence 999999999999999988764322110 000112334444544443333222211110000 0000111223
Q ss_pred CCcccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHHhhHH-
Q 000872 317 KYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMA- 395 (1245)
Q Consensus 317 ~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~li~g~~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~- 395 (1245)
.+..+++.|+..+++|.+...+||+..+..++++.+++++++|++|++.+.+.. ......|++|+.+....+.++.
T Consensus 334 ~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~---~~~~~~g~lf~~~~~~~f~~~~~ 410 (617)
T TIGR00955 334 GYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQK---GVQNINGALFLFLTNMTFQNVFP 410 (617)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999998875432 2344567788887777776554
Q ss_pred HHHHhhhcchhHHHhhhCCCCChhhHHHHHHHHHhhHHHHHHHHHHhhhhhccccccChhHHHHHHHHHHHHHHHHHHHH
Q 000872 396 EISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMF 475 (1245)
Q Consensus 396 ~~~~~~~~~~vf~~er~~~~y~~~~y~la~~~~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~l~~~~~~~~~~~~~ 475 (1245)
.+.....++++|.||+..++|++.+|++++.+.++|..++.+++|.+++|||+|++.++.+|+.++++.++...++.+++
T Consensus 411 ~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~ 490 (617)
T TIGR00955 411 VINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFG 490 (617)
T ss_pred HHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHhccccCcCCccccchhhhhhCHHHHHHHHHHHhhcCCCccc-ccCC---CCCC
Q 000872 476 RLIAAVGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWK-KILP---NKTK 551 (1245)
Q Consensus 476 ~~i~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~isp~~y~~~al~~~ef~~~~~~-~~~~---~~~~ 551 (1245)
.++++++++..+|..+++++++++++++||+++.+++|.||+|++|+||+.|++++++.|||.+..+. |... +.+.
T Consensus 491 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~ 570 (617)
T TIGR00955 491 YLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCP 570 (617)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999887653 2211 1233
Q ss_pred cchHHHhhhcCccccCcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 000872 552 PLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFL 595 (1245)
Q Consensus 552 ~~g~~~l~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~l~~~ 595 (1245)
..|.++++.+++... +.|.++++++++.++|.+..+++|.+.
T Consensus 571 ~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 571 SSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred cChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899998887654 458899999999999999999988753
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-68 Score=660.57 Aligned_cols=547 Identities=22% Similarity=0.360 Sum_probs=424.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSR 80 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~ 80 (1245)
+++|+|||||||||||++|+|+.+|+ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++....
T Consensus 96 ~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~- 172 (659)
T PLN03211 96 ILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS- 172 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-
Confidence 47999999999999999999998864 3589999999987532 23569999999999999999999999875432100
Q ss_pred cchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHHh
Q 000872 81 YDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV 160 (1245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1245)
.... +.++.++++++.+||++++||.+|++..++||||||||++||++|+
T Consensus 173 ------~~~~------------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~ 222 (659)
T PLN03211 173 ------LTKQ------------------------EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 222 (659)
T ss_pred ------CCHH------------------------HHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHH
Confidence 0000 1123467899999999999999999999999999999999999999
Q ss_pred cCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHHHHHhC
Q 000872 161 GPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240 (1245)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~~f~~~ 240 (1245)
++|+|++|||||+|||+.++.++.+.|+++++ .++++++++||+..++.++||++++|++|++++.|+.+++.+||+++
T Consensus 223 ~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~ 301 (659)
T PLN03211 223 INPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESV 301 (659)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHC
Confidence 99999999999999999999999999999976 35565565555555799999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHHHhcCccchhhhhhcCCCCCccCCHHHHHHHHHhchhhhhhhhhhCC---CCCCCC-----CCCc-
Q 000872 241 GFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGI---PFDKKN-----SHPA- 311 (1245)
Q Consensus 241 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~- 311 (1245)
|++||.+.||+||+.++.+.+...+.....+.+ ...++..+.|+... ..+..+.... ...... ..+.
T Consensus 302 G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (659)
T PLN03211 302 GFSPSFPMNPADFLLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEH 377 (659)
T ss_pred CCCCCCCCCHHHHHHHHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhccccccc
Confidence 999999999999999998654221000000000 01122223332111 0000000000 000000 0000
Q ss_pred ccccCCCcccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHH
Q 000872 312 ALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITF 391 (1245)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~li~g~~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~ 391 (1245)
......+..+++.|+..+++|++.. +|+......++++.+++++++|++|++.+ ....+...|++||.+.+..+
T Consensus 378 ~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~ 451 (659)
T PLN03211 378 RSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGV 451 (659)
T ss_pred ccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHH
Confidence 0011223467899999999999887 78888788999999999999999999874 12334567888888666554
Q ss_pred -hhHHHHHHhhhcchhHHHhhhCCCCChhhHHHHHHHHHhhHHHHHHHHHHhhhhhccccccChhHHHHHHHHHHHHHHH
Q 000872 392 -NGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQM 470 (1245)
Q Consensus 392 -~~~~~~~~~~~~~~vf~~er~~~~y~~~~y~la~~~~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~l~~~~~~~~ 470 (1245)
..+..+.....++++|+||+..++|++.+|++++.+.++|+.++.+++|+.++|||+|++.++++|+.++++.++...+
T Consensus 452 ~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~ 531 (659)
T PLN03211 452 FPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLV 531 (659)
T ss_pred HHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHH
Confidence 4456777777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccccCcCCccccchhhhhhCHHHHHHHHHHHhhcCCCcc-----ccc
Q 000872 471 SSAMFRLIAAVGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSW-----KKI 545 (1245)
Q Consensus 471 ~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~isp~~y~~~al~~~ef~~~~~-----~~~ 545 (1245)
+++++.+++++++++..|+.+++++.+++++++||+++ ++|.||+|++|+||+.|++++++.|||.+... .|.
T Consensus 532 ~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~ 609 (659)
T PLN03211 532 SQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCS 609 (659)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCC
Confidence 99999999999999999999999999999999999997 79999999999999999999999999976432 221
Q ss_pred CCCCCCcchHHHhhhcCccccCcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 000872 546 LPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFL 595 (1245)
Q Consensus 546 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~l~~~ 595 (1245)
.+......+..++....+. ....|.++.+++++++++.++.+++|.+.
T Consensus 610 ~~~~~~~~~c~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 610 LPHGSDRASCKFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred CcccCCCCCCccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1100000011122222222 23468899999999999999998888654
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-69 Score=661.72 Aligned_cols=193 Identities=28% Similarity=0.414 Sum_probs=162.5
Q ss_pred CCeEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECC
Q 000872 672 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG 751 (1245)
Q Consensus 672 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g 751 (1245)
-...++++|+++.|+.. +..++|+|+|++|++||.+||+|||||||||.+.+|-+..+ +.+|.|.|||
T Consensus 984 ~~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~IDg 1051 (1228)
T KOG0055|consen 984 VKGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVKIDG 1051 (1228)
T ss_pred ceeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECC
Confidence 34579999999998643 34579999999999999999999999999999999997654 4689999999
Q ss_pred eeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-------cCCccccccccc
Q 000872 752 YPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL-------VELNPLRQALVG 821 (1245)
Q Consensus 752 ~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~-------l~l~~~~~~~~g 821 (1245)
.+++. ..+|+.+|.|.|++.++. -|++||+.|+. .+.+.++. .++.+. .+|.+-.||.+|
T Consensus 1052 ~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-----~~vs~~eI----i~Aak~ANaH~FI~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1052 VDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-----EEVSEEEI----IEAAKLANAHNFISSLPQGYDTRVG 1121 (1228)
T ss_pred cccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-----CCCCHHHH----HHHHHHhhhHHHHhcCcCcccCccC
Confidence 98765 456788999999999986 59999999971 11333332 222222 466777899999
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 822 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 822 ~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
..+. +||||||||++||||+++||+||+|||+||.||+++.+.++++|.+.. .|||.|+++|++|
T Consensus 1122 erG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS 1186 (1228)
T KOG0055|consen 1122 ERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS 1186 (1228)
T ss_pred cccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh
Confidence 8765 599999999999999999999999999999999999999999999875 6999999999997
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-64 Score=663.86 Aligned_cols=201 Identities=27% Similarity=0.406 Sum_probs=172.7
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++..++. .++.+|+|||+.|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 4788898876631 124699999999999999999999999999999999998664 489999999886
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000872 755 NQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 832 (1245)
Q Consensus 755 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGe 832 (1245)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. .+.++.++.++++++.+||.+.+|..++ .|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHH
Confidence 42 2345679999999999999999999998877663 2344455678899999999988887654 699999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 833 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 833 rqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||++||+||+.+|+||+|||||+|||+.+++.+++.|++++++|+|||+|+|++. ++-...|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDr 2139 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTR 2139 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998878999999999975 55566777
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-64 Score=673.52 Aligned_cols=195 Identities=23% Similarity=0.291 Sum_probs=163.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++|+|++++|.. +.+++|+|+|++|+|||++||+||||||||||+++|.|..++ .+|+|.|||.++
T Consensus 1237 ~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~dI 1303 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCDI 1303 (1622)
T ss_pred cEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEec
Confidence 6999999998842 123599999999999999999999999999999999998664 489999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 824 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~~ 824 (1245)
.+ ..+|+.+++|||++.++.. |+||||.+.. +..++.++++++..++.+ -.|+.+|..
T Consensus 1304 ~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~----------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~- 1371 (1622)
T PLN03130 1304 SKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN----------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEA- 1371 (1622)
T ss_pred ccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC----------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCC-
Confidence 54 4678889999999999875 9999996421 122345677777777753 346666654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..+||||||||+||||||+++|+||+||||||+||++|+..|++.|++.. +++|||+++|+++. ...+|+
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~Dr 1441 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDR 1441 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCE
Confidence 34699999999999999999999999999999999999999999999886 48999999999863 345787
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-63 Score=664.65 Aligned_cols=195 Identities=21% Similarity=0.277 Sum_probs=162.6
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++|+|++++|+. +.+++|+|+|++|+|||++||+||||||||||+++|.|..++ .+|+|.+||.++
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEEh
Confidence 6899999998831 224699999999999999999999999999999999998664 489999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-------RQALVGLPG 824 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~~ 824 (1245)
++ ..+|+.++||||++.+++. |+||||.+.. +..++.++++++..++.+. .|+.+|..
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~----------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1368 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS----------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEG- 1368 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC----------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCC-
Confidence 54 5678889999999999875 9999996421 1223456777887777543 35666654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..+||||||||+||||||+++|+||+||||||+||++|+..|++.|++.. +++|||+++|+++ ....+|+
T Consensus 1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~Dr 1438 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDK 1438 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCE
Confidence 34699999999999999999999999999999999999999999999875 4899999999985 3345787
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-62 Score=654.56 Aligned_cols=195 Identities=19% Similarity=0.209 Sum_probs=162.7
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++|+|++++|+. +...+|+|||++|+|||++||+||||||||||+++|.|..++ .+|+|.+||.++
T Consensus 1284 ~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~dI 1350 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGLNI 1350 (1522)
T ss_pred cEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCEEc
Confidence 6999999998842 113599999999999999999999999999999999997654 489999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-------RQALVGLPG 824 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~~ 824 (1245)
++ ..+|+.++||||++.++.. |+||||... + +..++.++++++..++.+. .|+.+|..
T Consensus 1351 ~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~-------~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1418 (1522)
T TIGR00957 1351 AKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPF-------S---QYSDEEVWWALELAHLKTFVSALPDKLDHECAEG- 1418 (1522)
T ss_pred cccCHHHHHhcCeEECCCCcccCc-cHHHHcCcc-------c---CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCC-
Confidence 54 4678889999999999975 999999521 1 1223447778888877643 46666654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..+||||||||+||||||+++|+||+||||||+||++|+..|++.|++.. +++|||+++|+++. ...+|+
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~Dr 1488 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTR 1488 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCE
Confidence 35699999999999999999999999999999999999999999999875 48999999999853 445677
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-60 Score=548.18 Aligned_cols=444 Identities=27% Similarity=0.325 Sum_probs=329.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC-CceeeEEEECCccCCCCcc-------cceEEEecccc--ccCCCCCHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSS-LKASGKVTYNGHDMHEFVP-------QRTAAYISQHD--IHIGEMTVRETLAF 70 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~-~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~~--~~~~~~Tv~e~l~f 70 (1245)
+++|+|+|||||||+.++|.|.+++. ...+|+|.++|+++..... .+.++|++|++ .|-|-+||.+.|.-
T Consensus 37 ~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E 116 (539)
T COG1123 37 ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIRE 116 (539)
T ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHH
Confidence 47999999999999999999999876 3468999999987644332 26799999996 46677899998886
Q ss_pred HHhccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccc
Q 000872 71 SARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQR 150 (1245)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 150 (1245)
....+.... ..+++..+.++++..||++.... ++..+.||||||
T Consensus 117 ~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~r 160 (539)
T COG1123 117 ALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMR 160 (539)
T ss_pred HHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHH
Confidence 655442110 11234456779999999987665 567788999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecCh
Q 000872 151 KRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230 (1245)
Q Consensus 151 qRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~ 230 (1245)
|||.||+||+.+|++||+||||++||+.++.+|++.|+++.++ .+++++.|||+...+.++||||+||++|++++.|+.
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~ 239 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999865 578889999999999999999999999999999999
Q ss_pred hhHHHHHHhCCCCCCCCCChhhHHHHhcCccchhhhhhcCCCCCccCCHHHHHHHHHhchhhhhhhhhhCCCCCCCCCCC
Q 000872 231 EHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHP 310 (1245)
Q Consensus 231 ~~~~~~f~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1245)
+++.+ .|.|......+...
T Consensus 240 ~~i~~--------~p~hpYT~~Ll~a~----------------------------------------------------- 258 (539)
T COG1123 240 EEILS--------NPQHPYTRGLLAAV----------------------------------------------------- 258 (539)
T ss_pred HHHHh--------ccCCcccHHHHhhC-----------------------------------------------------
Confidence 88743 11111000000000
Q ss_pred cccccCCCcccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHH
Q 000872 311 AALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTIT 390 (1245)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~li~g~~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~ 390 (1245)
T Consensus 259 -------------------------------------------------------------------------------- 258 (539)
T COG1123 259 -------------------------------------------------------------------------------- 258 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHhhhcchhHHHhhhCCCCChhhHHHHHHHHHhhHHHHHHHHHHhhhhhccccccChhHHHHHHHHHHHHHHH
Q 000872 391 FNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQM 470 (1245)
Q Consensus 391 ~~~~~~~~~~~~~~~vf~~er~~~~y~~~~y~la~~~~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~l~~~~~~~~ 470 (1245)
T Consensus 259 -------------------------------------------------------------------------------- 258 (539)
T COG1123 259 -------------------------------------------------------------------------------- 258 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccccCcCCccccchhhhhhCHHHHHHHHHHHhhcCCCcccccCCCCC
Q 000872 471 SSAMFRLIAAVGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKT 550 (1245)
Q Consensus 471 ~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~isp~~y~~~al~~~ef~~~~~~~~~~~~~ 550 (1245)
|... . ..
T Consensus 259 ------------------------------------------p~~~-----------------------~-~~------- 265 (539)
T COG1123 259 ------------------------------------------PRLG-----------------------D-EK------- 265 (539)
T ss_pred ------------------------------------------CCcc-----------------------c-cc-------
Confidence 0000 0 00
Q ss_pred CcchHHHhhhcCccccCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccccCCCccccccccCC
Q 000872 551 KPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSRTGGTVQLSTCANS 630 (1245)
Q Consensus 551 ~~~g~~~l~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1245)
T Consensus 266 -------------------------------------------------------------------------------- 265 (539)
T COG1123 266 -------------------------------------------------------------------------------- 265 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccchhhhhhccCCCCcccccccCCCccCCCCccCCCCeEEEEEeEEEEEecCccccccccccCcceeeeceEEE
Q 000872 631 SSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGA 710 (1245)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~ 710 (1245)
... . .... +.. ...-++.+|++..+..+..+. ....+...+++||||+
T Consensus 266 ---~~~-----------~-------~~~~--~~~-------~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~ 313 (539)
T COG1123 266 ---IIR-----------L-------PRRG--PLR-------AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFD 313 (539)
T ss_pred ---ccc-----------c-------cccc--ccc-------cCceeEeeeeeeeeccccccc--cccccceeeeeeeeeE
Confidence 000 0 0000 000 011355666665554322111 0001334689999999
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC--Cc---ccccceEEEEccC--CCCCCCCCHHHHHH
Q 000872 711 FRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK--NQ---ETFTRISGYCEQN--DIHSPYVTVYESLL 783 (1245)
Q Consensus 711 i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~--~~---~~~~~~~~~v~q~--~~~~~~ltv~e~l~ 783 (1245)
+++||++||+|.||||||||.++|+|..++ .+|+|.++|.+. +. ...++.+-+++|+ ..+.|.+||++.+.
T Consensus 314 l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~ 391 (539)
T COG1123 314 LREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILA 391 (539)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHH
Confidence 999999999999999999999999998765 489999999762 11 1234455556665 45789999999997
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHH
Q 000872 784 YSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 862 (1245)
Q Consensus 784 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~ 862 (1245)
-...... .....+++++|.++++.+||.. ..+.. ...||||||||++|||||+.+|++|++|||||.||+.+
T Consensus 392 epL~~~~--~~~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsv 464 (539)
T COG1123 392 EPLRIHG--GGSGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSV 464 (539)
T ss_pred hHHhhhc--ccchHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHH
Confidence 6554433 2235677788999999999985 23332 45799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 863 AAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 863 ~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+..|.+.|+++.++ |.|.|+++|+.. -+-...|+
T Consensus 465 qa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~dr 499 (539)
T COG1123 465 QAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADR 499 (539)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCce
Confidence 99999999999765 999999999975 22334455
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-59 Score=628.14 Aligned_cols=196 Identities=23% Similarity=0.243 Sum_probs=164.3
Q ss_pred eEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCee
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 753 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~ 753 (1245)
..++|+|++++|+. +.+.+|+|||++|+|||++||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEE
Confidence 36999999998842 223599999999999999999999999999999999998664 48999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000872 754 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-------RQALVGLP 823 (1245)
Q Consensus 754 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 823 (1245)
+.. ..+|+.++||||++.++.. |+||||... .+..++.++++++..++.+. .|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~----------~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF----------LEASSAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc----------cCCCHHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 4678899999999998875 999999421 11223557888888888653 46667654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhC-CCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 824 GVNGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 824 ~~~~lSgGerqr~~ia~~l~~~-p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..+||||||||+||||||+++ |+||+||||||+||++++..|++.|++.. +++|||+++|+++ ....+|+
T Consensus 1443 -G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~Dr 1513 (1560)
T PTZ00243 1443 -GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDK 1513 (1560)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCE
Confidence 356999999999999999996 89999999999999999999999999875 4799999999984 4567887
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-59 Score=626.93 Aligned_cols=195 Identities=21% Similarity=0.248 Sum_probs=164.4
Q ss_pred eEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCee
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 753 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~ 753 (1245)
..++|+|++++|+. +.+.+|+|||++|+|||++||+|+||||||||+++|+|..+ .+|+|.|||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 36999999998842 22469999999999999999999999999999999999864 37999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000872 754 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-------RQALVGLP 823 (1245)
Q Consensus 754 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 823 (1245)
++. ..+|+.++||||++.+++. |+||||... .+..++.++++++..+|.+. .|+.+|..
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~----------~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPY----------EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCcc----------cCCCHHHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 764 4577889999999999975 999999421 12234567889998888643 46666653
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 824 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..+||||||||+||||||+++|+||+||||||+||..++..|++.|++.. +++|||+++|+++ ....+|+
T Consensus 1351 -G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~Dr 1420 (1490)
T TIGR01271 1351 -GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQ 1420 (1490)
T ss_pred -CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCE
Confidence 45699999999999999999999999999999999999999999999875 4799999999985 4456887
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-60 Score=627.18 Aligned_cols=200 Identities=20% Similarity=0.334 Sum_probs=164.3
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-------------
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG------------- 741 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~------------- 741 (1245)
.++|+|++|+|+.. +.+++|+|+|++|+|||++||+||||||||||+++|.|..++.
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 69999999988521 1236999999999999999999999999999999999976541
Q ss_pred ---------------------------------------eeEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCHH
Q 000872 742 ---------------------------------------YITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVTVY 779 (1245)
Q Consensus 742 ---------------------------------------~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~ 779 (1245)
+.+|+|.+||.++.+ ..+|+.++||+|++.++. .|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHH
Confidence 148999999998753 567889999999998884 7999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEe
Q 000872 780 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 852 (1245)
Q Consensus 780 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lD 852 (1245)
||+.|+. + +.+. +.++++++..++. +-.||.+|..+ ..||||||||++|||||+++|+||+||
T Consensus 1314 eNI~~g~----~-~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK----E-DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9998852 1 2222 3356666665554 34588888654 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHhhh
Q 000872 853 EPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 853 EpTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||+||++++..|++.|+++. .+++|+|+++|+++ .....|+
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~ 1427 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDK 1427 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCE
Confidence 9999999999999999999886 35899999999985 3466776
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=575.28 Aligned_cols=190 Identities=20% Similarity=0.336 Sum_probs=154.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcc----cccceEEEEccCC---CCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE----TFTRISGYCEQND---IHS 773 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~ 773 (1245)
+.+|+|+|++|++||++||+||||||||||+++|+|..++ +.+|+|.++|.++... ..++.++|++|+. .++
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 3589999999999999999999999999999999997642 1389999999876421 2345689999985 467
Q ss_pred CCCCHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeE
Q 000872 774 PYVTVYESLLYSAWLRLSS--EVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 850 (1245)
Q Consensus 774 ~~ltv~e~l~~~~~lr~~~--~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~ 850 (1245)
+.+||.|++.+....+... ....++..+.++++++.+++. +..+..+ +.||||||||++||++|+.+|++|+
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lll 428 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILI 428 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 7899999998753211110 012233445688999999996 4566554 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 851 MDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 851 lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 429 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~ 474 (506)
T PRK13549 429 LDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDR 474 (506)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999888999999999985 55566776
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=573.56 Aligned_cols=187 Identities=22% Similarity=0.348 Sum_probs=153.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcc----cccceEEEEccCC---CCCCC
Q 000872 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE----TFTRISGYCEQND---IHSPY 775 (1245)
Q Consensus 703 ~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 775 (1245)
+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.++... ..++.+||++|+. .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 69999999999999999999999999999999998654 489999999876431 2345689999995 46788
Q ss_pred CCHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEE
Q 000872 776 VTVYESLLYSAWLRLSS---EVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 851 (1245)
Q Consensus 776 ltv~e~l~~~~~lr~~~---~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~l 851 (1245)
+||.|++.+........ ....++.++.++++++.+|+. +..+..+ ..||||||||++||++|+.+|++|+|
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 99999998753211100 112233445688999999995 5566554 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 852 DEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 852 DEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~ 464 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDR 464 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCE
Confidence 9999999999999999999999877999999999985 55566676
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=576.40 Aligned_cols=187 Identities=22% Similarity=0.364 Sum_probs=152.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcc----cccceEEEEccC---CCCCCC
Q 000872 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE----TFTRISGYCEQN---DIHSPY 775 (1245)
Q Consensus 703 ~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~---~~~~~~ 775 (1245)
+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|+ ..+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 89999999999999999999999999999999998654 489999999876421 234568999998 457788
Q ss_pred CCHHHHHHHHHHhc---CCC--C-CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCe
Q 000872 776 VTVYESLLYSAWLR---LSS--E-VNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSI 848 (1245)
Q Consensus 776 ltv~e~l~~~~~lr---~~~--~-~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~i 848 (1245)
+||.|++.+....+ ... . ...+..++.++++++.+|+. +..+..+ ..|||||||||+|||+|+.+|++
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~l 430 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEV 430 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCE
Confidence 99999998653211 000 0 11223335678999999996 6666654 46999999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 849 IFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 849 l~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|+|||||+|||+.+...+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 431 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~ 478 (510)
T PRK09700 431 IIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDR 478 (510)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCE
Confidence 9999999999999999999999999877999999999985 44556666
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-59 Score=577.32 Aligned_cols=211 Identities=21% Similarity=0.204 Sum_probs=166.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
-++++|+++.+...... .......+.+|+||||+|++||++||+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 313 ~L~~~~l~~~y~~~~~~--~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL--LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc--ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEEC
Confidence 47888998876421000 00000124699999999999999999999999999999999998654 489999999876
Q ss_pred Ccc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000872 755 NQE------TFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGV 825 (1245)
Q Consensus 755 ~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 825 (1245)
... .+++.++|++|+. .+++.+||.|++.+....+. ....++.++++.++++.+||. +..+..+
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----- 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP----- 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----
Confidence 421 2356799999986 47888999999987644321 112344556789999999996 4555543
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 826 ~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+.|||||||||+|||+|+.+|++|+|||||+|||..++..+++.|++++++ |.|||+++|+++ .+.+..|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dr 533 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHR 533 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 479999999999999999999999999999999999999999999998765 899999999986 44566676
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-59 Score=570.90 Aligned_cols=187 Identities=20% Similarity=0.249 Sum_probs=150.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcc----cccceEEEEccCC---CCCCC
Q 000872 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE----TFTRISGYCEQND---IHSPY 775 (1245)
Q Consensus 703 ~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 775 (1245)
+|+|+|+.+++||++||+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|+. .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 59999999999999999999999999999999997654 379999999876431 1235689999974 47788
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCC
Q 000872 776 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 854 (1245)
Q Consensus 776 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEp 854 (1245)
+|+.|++......+..........++.++++++.+|+. +..+..+ +.||||||||++||++|+.+|++|+||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999986421111111011222345688999999996 5666554 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 855 TSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 855 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|+|||+.+...+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~ 472 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADR 472 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 9999999999999999999878999999999986 55566676
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=567.67 Aligned_cols=202 Identities=20% Similarity=0.312 Sum_probs=159.5
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEC-Cee-
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITIS-GYP- 753 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~-g~~- 753 (1245)
++++|+++.+... ..+.+.+|+|+|+.|++||++||+||||||||||+++|+|..++ .+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~ 349 (520)
T TIGR03269 280 IKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEW 349 (520)
T ss_pred EEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCcc
Confidence 6677777765310 01124699999999999999999999999999999999998653 48999996 532
Q ss_pred --CCc------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-----cccccc
Q 000872 754 --KNQ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-----LRQALV 820 (1245)
Q Consensus 754 --~~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-----~~~~~~ 820 (1245)
... ...++.++|++|+..+++.+||.|++.+...+. ...++.+++++++++.+|+.+ ..+..
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 424 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY- 424 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-
Confidence 111 123456899999988888999999998754321 123334456889999999975 23443
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 821 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 821 g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
...|||||||||+||++|+.+|++|+|||||+|||+.+...+++.|++++++ |.|||+++|++. .+.+..|+
T Consensus 425 ----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~ 497 (520)
T TIGR03269 425 ----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDR 497 (520)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCE
Confidence 3479999999999999999999999999999999999999999999998764 899999999986 45566676
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=569.03 Aligned_cols=187 Identities=26% Similarity=0.309 Sum_probs=153.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcc------cccceEEEEccCC--CC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE------TFTRISGYCEQND--IH 772 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~ 772 (1245)
+.+|+|+|+++++||++||+||||||||||+++|+|..+ .+|+|.++|.++... .+++.++|++|+. .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 469999999999999999999999999999999999763 389999999875421 1245689999986 47
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEE
Q 000872 773 SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 851 (1245)
Q Consensus 773 ~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~l 851 (1245)
++.+||.|++.+....+.. .....+.+++++++++.+|+. +..+..+ ..|||||||||+||++|+.+|++|+|
T Consensus 376 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 7889999999886543211 122334456788999999997 3555543 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 852 DEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 852 DEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+..|+
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~ 495 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQ 495 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCe
Confidence 9999999999999999999999765 899999999985 34455666
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=566.82 Aligned_cols=190 Identities=18% Similarity=0.318 Sum_probs=154.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc----ccccceEEEEccCC---CCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQND---IHS 773 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~ 773 (1245)
+.+|+|+|+++++||++||+|||||||||||++|+|..++ +.+|+|.++|.++.. ...++.++|++|+. .++
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 3589999999999999999999999999999999998652 137999999987642 12345689999995 478
Q ss_pred CCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeE
Q 000872 774 PYVTVYESLLYSAWLRLS--SEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 850 (1245)
Q Consensus 774 ~~ltv~e~l~~~~~lr~~--~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~ 850 (1245)
+.+||+|++.+...-... ........++.++++++.+++.+ ..+..+ +.||||||||++||++|+.+|++|+
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lll 426 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLI 426 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 889999999875321110 01122334466889999999964 455544 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 851 MDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 851 lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||+|||+.++..+++.|++++++|+|||+++|++. .+-+..|+
T Consensus 427 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~ 472 (500)
T TIGR02633 427 LDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDR 472 (500)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999888999999999985 45556676
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-58 Score=562.97 Aligned_cols=188 Identities=21% Similarity=0.355 Sum_probs=152.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc----ccccceEEEEccCC---CCCC
Q 000872 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQND---IHSP 774 (1245)
Q Consensus 702 ~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~ 774 (1245)
.+++|+|+.|++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|+. .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 389999999999999999999999999999999998653 48999999987542 12345689999985 4788
Q ss_pred CCCHHHHHHHHHHhcC-CCC--CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeE
Q 000872 775 YVTVYESLLYSAWLRL-SSE--VNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 850 (1245)
Q Consensus 775 ~ltv~e~l~~~~~lr~-~~~--~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~ 850 (1245)
.+|+.|++.+...... +.. ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|++|+
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEE
Confidence 8999999976432111 000 01223345678999999994 5666654 3699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 851 MDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 851 lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||+|||..+...+++.|++++++|.|||+++|++. .+.+..|+
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~ 465 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADR 465 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCE
Confidence 99999999999999999999999888999999999985 44455666
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=555.25 Aligned_cols=189 Identities=21% Similarity=0.343 Sum_probs=154.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc----ccceEEEeccccccCCCCCHHHHHHHHHh-cc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV----PQRTAAYISQHDIHIGEMTVRETLAFSAR-CQ 75 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~-~~ 75 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.++.. ..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 102 (491)
T PRK10982 26 IHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTK 102 (491)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccc
Confidence 47999999999999999999999887 999999998875432 13569999999988999999999987531 00
Q ss_pred CCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHH
Q 000872 76 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTT 155 (1245)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~i 155 (1245)
+. .. ... +..+.++++++.+||.+..+..++ .|||||||||+|
T Consensus 103 ~~--~~------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~l 145 (491)
T PRK10982 103 GM--FV------DQD------------------------KMYRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQMIEI 145 (491)
T ss_pred cc--cc------CHH------------------------HHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHH
Confidence 00 00 000 011235678889999877766554 599999999999
Q ss_pred HHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChh
Q 000872 156 GEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231 (1245)
Q Consensus 156 a~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~ 231 (1245)
||||+.+|++|||||||+|||+.++.++.+.|+++++ .+.++++++|+.+++..+||++++|++|+++..|+++
T Consensus 146 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (491)
T PRK10982 146 AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE--RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLA 219 (491)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChh
Confidence 9999999999999999999999999999999999865 3567888999999999999999999999999887643
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=547.92 Aligned_cols=194 Identities=20% Similarity=0.336 Sum_probs=151.3
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. ++.+|+|+|+.+++||++||+||||||||||+++|+|..++ ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 478888887652 23599999999999999999999999999999999996432 1379999999764
Q ss_pred Cc----ccccceEEEEccCCCCCC--CCCHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000872 755 NQ----ETFTRISGYCEQNDIHSP--YVTVYESLLYSAWL--RLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGV 825 (1245)
Q Consensus 755 ~~----~~~~~~~~~v~q~~~~~~--~ltv~e~l~~~~~l--r~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~ 825 (1245)
.. ...++.++|++|++.+.. ..|++|.+.+...- ...... ..+.++.++++++.+|+.+ ..+..+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~----- 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAV-SDRQQKLAQQWLDILGIDKRTADAPF----- 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCC-CHHHHHHHHHHHHHcCCchhhccCch-----
Confidence 32 123466899999876543 35777766543211 111111 1223456889999999986 666554
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCC
Q 000872 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTG-RTVVCTIHQPS 888 (1245)
Q Consensus 826 ~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~p~ 888 (1245)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++| .|||+++|++.
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~ 463 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE 463 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh
Confidence 4699999999999999999999999999999999999999999999998766 47999999985
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=465.78 Aligned_cols=430 Identities=26% Similarity=0.328 Sum_probs=325.3
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCC--CCceeeEEEECCccCCCCcc-------cceEEEecccc--ccCCCCCHHHHHHH
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDS--SLKASGKVTYNGHDMHEFVP-------QRTAAYISQHD--IHIGEMTVRETLAF 70 (1245)
Q Consensus 2 ~~ilG~~GsGKSTLL~~l~G~~~~--~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~~--~~~~~~Tv~e~l~f 70 (1245)
+||+|+||||||-..+.++|+++. ....+|+|.++|+++-.... ...|++++|+| .+-|-.|+...+.-
T Consensus 39 lAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E 118 (534)
T COG4172 39 LALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAE 118 (534)
T ss_pred EEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHH
Confidence 689999999999999999999974 23468999999998743322 14699999997 45666788777776
Q ss_pred HHhccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccc
Q 000872 71 SARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQR 150 (1245)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 150 (1245)
..+++... ...+++.++-++++..|+++..... +.....||||||
T Consensus 119 ~l~~Hrg~---------------------------------~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGGqR 163 (534)
T COG4172 119 VLRLHRGL---------------------------------SRAAARARALELLELVGIPEPEKRL--DAYPHELSGGQR 163 (534)
T ss_pred HHHHHhcc---------------------------------cHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCcchh
Confidence 55543210 1122344566788889998754332 356678999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecCh
Q 000872 151 KRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230 (1245)
Q Consensus 151 qRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~ 230 (1245)
|||.||+||+.+|++||-||||++||.....+|+++|+++..+. +..++.|||+..-+..++|||+||.+|++++.|+.
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~-gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t 242 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKFADRVYVMQHGEIVETGTT 242 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHh-CcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcH
Confidence 99999999999999999999999999999999999999998764 77888899999999999999999999999999987
Q ss_pred hhHHHHHHhCCCCCCCCCChhhHHHHhcCccchhhhhhcCCCCCccCCHHHHHHHHHhchhhhhhhhhhCCCCCCCCCCC
Q 000872 231 EHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHP 310 (1245)
Q Consensus 231 ~~~~~~f~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1245)
+++-. .|.|......+..
T Consensus 243 ~~lF~--------~PqHpYTr~Ll~a------------------------------------------------------ 260 (534)
T COG4172 243 ETLFA--------APQHPYTRKLLAA------------------------------------------------------ 260 (534)
T ss_pred HHHhh--------CCCChHHHHHHhc------------------------------------------------------
Confidence 65521 1111100000000
Q ss_pred cccccCCCcccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHH
Q 000872 311 AALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTIT 390 (1245)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~li~g~~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~ 390 (1245)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHhhhcchhHHHhhhCCCCChhhHHHHHHHHHhhHHHHHHHHHHhhhhhccccccChhHHHHHHHHHHHHHHH
Q 000872 391 FNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQM 470 (1245)
Q Consensus 391 ~~~~~~~~~~~~~~~vf~~er~~~~y~~~~y~la~~~~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~l~~~~~~~~ 470 (1245)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccccCcCCccccchhhhhhCHHHHHHHHHHHhhcCCCcccccCCCCC
Q 000872 471 SSAMFRLIAAVGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKT 550 (1245)
Q Consensus 471 ~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~isp~~y~~~al~~~ef~~~~~~~~~~~~~ 550 (1245)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchHHHhhhcCccccCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccccCCCccccccccCC
Q 000872 551 KPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSRTGGTVQLSTCANS 630 (1245)
Q Consensus 551 ~~~g~~~l~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1245)
++.|
T Consensus 261 eP~g---------------------------------------------------------------------------- 264 (534)
T COG4172 261 EPSG---------------------------------------------------------------------------- 264 (534)
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCccccccchhhhhhccCCCCcccccccCCCccCCCCccCCCCeEEEEEeEEEEEecCccccccccccCcceeeeceEEE
Q 000872 631 SSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGA 710 (1245)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~ 710 (1245)
.. ...+ +..+.-++.+|++..++.+..+-++ ......++++||++
T Consensus 265 -------------------------~~-~p~~-------~~~~~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~ 309 (534)
T COG4172 265 -------------------------DP-PPLP-------EDAPVLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLT 309 (534)
T ss_pred -------------------------CC-CCCC-------CCCCceEEecceEEEEecCCccccc--cchheEEeccceeE
Confidence 00 0000 0011234455555544433221111 11234689999999
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc------ccccceEEEEccCCC--CCCCCCHHHHH
Q 000872 711 FRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ------ETFTRISGYCEQNDI--HSPYVTVYESL 782 (1245)
Q Consensus 711 i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~--~~~~ltv~e~l 782 (1245)
.++||.+||+|.||||||||-.+|.+...+ +|+|.++|.+++. ..+|+..-.|+||+. +.|.+||.|-+
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII 386 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQII 386 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHh
Confidence 999999999999999999999999987653 5999999998753 235677888999975 67889999988
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHH
Q 000872 783 LYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 862 (1245)
Q Consensus 783 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~ 862 (1245)
.-+.....+ ..+..+++++|.++++++||....- +.....+|||||||++||||++.+|++++||||||.||-.-
T Consensus 387 ~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r----~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SV 461 (534)
T COG4172 387 EEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATR----NRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSV 461 (534)
T ss_pred hhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHh----hcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHH
Confidence 766555543 4678899999999999999986432 12246799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecCCC
Q 000872 863 AAVVMRTVRNTVD-TGRTVVCTIHQPS 888 (1245)
Q Consensus 863 ~~~i~~~l~~~~~-~g~tvi~~~H~p~ 888 (1245)
+.+|++.||++.+ .|-+-++++||..
T Consensus 462 QaQvv~LLr~LQ~k~~LsYLFISHDL~ 488 (534)
T COG4172 462 QAQVLDLLRDLQQKHGLSYLFISHDLA 488 (534)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 9999999999864 4899999999975
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=526.31 Aligned_cols=186 Identities=22% Similarity=0.302 Sum_probs=149.2
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++.+. ++.+|+|+|++|++||++||+||||||||||+++|+|..++ .+|+|.+++.
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 478889887652 23699999999999999999999999999999999998654 4899999542
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHH
Q 000872 755 NQETFTRISGYCEQND-IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQ 832 (1245)
Q Consensus 755 ~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGe 832 (1245)
..+||++|+. .+++.+||+|++.+....+. .... +..++++++.+|+.+ ..+..+ ..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999986 67788999999987643221 1111 123457899999964 345443 4699999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 833 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 833 rqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||++||++|+.+|++|+|||||+|||+.+...+.+.|+++. .|||+++|++. .+.+..|+
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~vtHd~~-~~~~~~d~ 511 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---GCAVVISHDRW-FLDRIATH 511 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---CeEEEEECCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999872 48999999975 44445565
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=523.12 Aligned_cols=183 Identities=20% Similarity=0.264 Sum_probs=148.9
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 588899987753 23599999999999999999999999999999999997654 4799999873
Q ss_pred CcccccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHH
Q 000872 755 NQETFTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTE 831 (1245)
Q Consensus 755 ~~~~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgG 831 (1245)
+.+||++|+.. +.+.+|++|++.+.. .. ...++.++++++.+|+. +..+..+ ..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-----~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-----GDDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-----CccHHHHHHHHHHcCCChhHhcCcc-----cccCHH
Confidence 45899999864 456789999986421 11 11234578899999994 5555543 469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 832 erqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++ +.|||+++|++. .+-+..|+
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~ 504 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATR 504 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999876 459999999985 44444565
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=518.10 Aligned_cols=186 Identities=20% Similarity=0.294 Sum_probs=148.8
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. ++.+|+|+|+.|++||++||+||||||||||+++|+|...+ .+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECCc--
Confidence 478888887652 23699999999999999999999999999999999998654 4899999542
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHH
Q 000872 755 NQETFTRISGYCEQND-IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQ 832 (1245)
Q Consensus 755 ~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGe 832 (1245)
..+||++|+. .+++.+||.|++.+...... .... +..++++++.+|+.+ ..+..+ ..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999986 47788999999987642211 1111 223567899999964 345443 4699999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 833 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 833 rqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||++||++|+.+|++|+|||||+|||+.+...+.+.|+++. .|||+++|++. .+-...|+
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~ 509 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATH 509 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999872 48999999975 34445565
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-53 Score=517.72 Aligned_cols=183 Identities=22% Similarity=0.247 Sum_probs=151.7
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. + ..|+++|+.+++||++||+||||||||||+++|+|..++ .+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----
Confidence 477888876542 1 248999999999999999999999999999999998654 48999886
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000872 755 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834 (1245)
Q Consensus 755 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerq 834 (1245)
..++|++|+..+.+.+||+|++.+.... .. ....++++++.+++.+..+..+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~---~~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LG---SSYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cC---hHHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1489999998888889999999864211 11 1224688999999987777654 469999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 835 r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||+||++|+.+|++|+|||||+|||..++..+.+.|++++++ |+|||+++|++. .+....|+
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDr 523 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDR 523 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999764 899999999975 33445566
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-51 Score=508.35 Aligned_cols=182 Identities=20% Similarity=0.318 Sum_probs=145.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++.+. ++.+|+|+|+.|++||++||+|||||||||||++|+|...+ .+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC--
Confidence 478889887652 24699999999999999999999999999999999998654 4899999741
Q ss_pred CcccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHH
Q 000872 755 NQETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTE 831 (1245)
Q Consensus 755 ~~~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgG 831 (1245)
..+||++|+. .+.+..|+.+++.- . . ....++.+.++++.+++.. ..+..+ +.||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~----~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--A----PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--C----chhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34456677776531 1 1 1122355788999999963 455544 469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 832 erqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||+||++|+.+|++|+|||||+|||..+...+.+.|+++ +.|||+++|++. .+....|+
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~ 496 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDD 496 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999987 349999999975 34455565
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-51 Score=507.30 Aligned_cols=186 Identities=24% Similarity=0.314 Sum_probs=147.9
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
-+.++|+++.+. ++.+|+|+|+.|++||++||+|||||||||||++|+|...+ .+|+|.+ |.+
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~- 381 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTK- 381 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCC-
Confidence 478899887652 24699999999999999999999999999999999998653 4899998 432
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHH
Q 000872 755 NQETFTRISGYCEQND-IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQ 832 (1245)
Q Consensus 755 ~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGe 832 (1245)
-.+||++|+. .+.+.+||.|++.+..... ... .....+.++++.+++. +..+..+ +.|||||
T Consensus 382 ------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 382 ------LEVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred ------cEEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 1489999975 5778899999998653210 011 1234577888889885 3455544 4699999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 833 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 833 rqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||+||++|+.+|++|+|||||+|||..+...+.+.|++. +.|||+++|++. .+-...|+
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~ 506 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTE 506 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999999876 459999999964 33344454
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-51 Score=485.80 Aligned_cols=202 Identities=25% Similarity=0.314 Sum_probs=157.0
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCcc
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRY 81 (1245)
Q Consensus 2 ~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~~ 81 (1245)
++|||+||||||||||+|+|...|+ +|+|...+. -.++|++|++...+..||.|.+.-+..- .+
T Consensus 32 iGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~--------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~-----~~ 95 (530)
T COG0488 32 IGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG--------LRVGYLSQEPPLDPEKTVLDYVIEGFGE-----LR 95 (530)
T ss_pred EEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC--------ceEEEeCCCCCcCCCccHHHHHHhhhHH-----HH
Confidence 6899999999999999999999988 999987752 2599999999999999999999865421 11
Q ss_pred chhhhhhHHHHhhhcCCCch---hHHHH-HHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 82 DMLVELSRREKAAKIIPDAD---IDVFM-KAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
+... +.+......++.+ +.++. ......+++.+.+++.++..||+++. ++.++ +||||||.||+||+
T Consensus 96 ~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~ 166 (530)
T COG0488 96 ELLA---ELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS-----SLSGGWRRRVALAR 166 (530)
T ss_pred HHHH---HHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh-----hcCHHHHHHHHHHH
Confidence 1111 1111111111111 11111 11223446777889999999999987 76666 49999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEE-EecChhhH
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIV-YQGPLEHV 233 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv-~~G~~~~~ 233 (1245)
||+.+|++|+||||||+||..+..++.+.|+++ .+ ++++|+|++..+.++|++|+-++.|++. |.|.++..
T Consensus 167 aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 167 ALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred HHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHH
Confidence 999999999999999999999999999999864 35 7788999999999999999999999885 77876654
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=466.72 Aligned_cols=421 Identities=22% Similarity=0.336 Sum_probs=321.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCccc----ceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ----RTAAYISQHDIHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++++|.||||||||+|+|+|.++|+ +|+|.++|++....+++ .-|+.|+|+..+.|++||.|||.++.....
T Consensus 36 V~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~ 112 (500)
T COG1129 36 VHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTR 112 (500)
T ss_pred EEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhccccccc
Confidence 47999999999999999999999998 99999999988765543 468999999999999999999987654321
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
..... .+ ...++.+.++++.+|+....++.|++ ||+||||-|.||
T Consensus 113 ~~g~i------d~------------------------~~m~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~VeIA 157 (500)
T COG1129 113 RFGLI------DR------------------------KAMRRRARELLARLGLDIDPDTLVGD-----LSIAQRQMVEIA 157 (500)
T ss_pred CCCcc------CH------------------------HHHHHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHHHHHH
Confidence 00000 00 11123456789999997558888875 999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecCh-hhHHH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL-EHVEQ 235 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~-~~~~~ 235 (1245)
||+..+++|+|||||||+|+......+++.+++++. +|..++.|+|..+|+++.||||.||.||+.+..++. .+..
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~- 234 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETS- 234 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCC-
Confidence 999999999999999999999999999999999975 588889999999999999999999999999876652 2110
Q ss_pred HHHhCCCCCCCCCChhhHHHHhcCccchhhhhhcCCCCCccCCHHHHHHHHHhchhhhhhhhhhCCCCCCCCCCCccccc
Q 000872 236 FFISMGFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 315 (1245)
Q Consensus 236 ~f~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (1245)
.++..
T Consensus 235 -------------------------------------------~~~lv-------------------------------- 239 (500)
T COG1129 235 -------------------------------------------EDELV-------------------------------- 239 (500)
T ss_pred -------------------------------------------HHHHH--------------------------------
Confidence 00000
Q ss_pred CCCcccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHHhhHH
Q 000872 316 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMA 395 (1245)
Q Consensus 316 ~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~li~g~~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~ 395 (1245)
T Consensus 240 -------------------------------------------------------------------------------- 239 (500)
T COG1129 240 -------------------------------------------------------------------------------- 239 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhcchhHHHhhhCCCCChhhHHHHHHHHHhhHHHHHHHHHHhhhhhccccccChhHHHHHHHHHHHHHHHHHHHH
Q 000872 396 EISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMF 475 (1245)
Q Consensus 396 ~~~~~~~~~~vf~~er~~~~y~~~~y~la~~~~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~l~~~~~~~~~~~~~ 475 (1245)
-.|+|=
T Consensus 240 -------------------------------------------------~~MvGr------------------------- 245 (500)
T COG1129 240 -------------------------------------------------RLMVGR------------------------- 245 (500)
T ss_pred -------------------------------------------------HHhhCc-------------------------
Confidence 000000
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHhccccCcCCccccchhhhhhCHHHHHHHHHHHhhcCCCcccccCCCCCCcchH
Q 000872 476 RLIAAVGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKPLGI 555 (1245)
Q Consensus 476 ~~i~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~isp~~y~~~al~~~ef~~~~~~~~~~~~~~~~g~ 555 (1245)
.....
T Consensus 246 -----------------------------------------------------------------~~~~~---------- 250 (500)
T COG1129 246 -----------------------------------------------------------------ELEDL---------- 250 (500)
T ss_pred -----------------------------------------------------------------chhhh----------
Confidence 00000
Q ss_pred HHhhhcCccccCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccccCCCccccccccCCCCccc
Q 000872 556 EVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHIT 635 (1245)
Q Consensus 556 ~~l~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1245)
.+
T Consensus 251 ------------------------------------------------------------------------------~~ 252 (500)
T COG1129 251 ------------------------------------------------------------------------------FP 252 (500)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred cccchhhhhhccCCCCcccccccCCCccCCCCccCCCCeEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCe
Q 000872 636 RSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGV 715 (1245)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge 715 (1245)
. .. .. ...+..+++++++. ...++|+||++++||
T Consensus 253 ------------~-~~----------~~------~~~~~~l~v~~l~~-----------------~~~~~dvSf~vr~GE 286 (500)
T COG1129 253 ------------E-PP----------EE------GIGEPVLEVRNLSG-----------------GGKVRDVSFTVRAGE 286 (500)
T ss_pred ------------c-cc----------cc------CCCCcEEEEecCCC-----------------CCceeCceeEEeCCc
Confidence 0 00 00 00011344444431 115789999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHh
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE----TFTRISGYCEQND---IHSPYVTVYESLLYSAWL 788 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ltv~e~l~~~~~l 788 (1245)
++||-|-=|||+|-|+++|.|..+. .+|+|.+||++.... ..+.-++|||.|- -+++.++|.||+.++...
T Consensus 287 IlGiaGLvGaGRTEl~~~lfG~~~~--~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~ 364 (500)
T COG1129 287 ILGIAGLVGAGRTELARALFGARPA--SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLR 364 (500)
T ss_pred EEEEeccccCCHHHHHHHHhCCCcC--CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhh
Confidence 9999999999999999999995443 489999999986532 3445689999874 467889999999887332
Q ss_pred cCCC--CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHH
Q 000872 789 RLSS--EVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866 (1245)
Q Consensus 789 r~~~--~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i 866 (1245)
+... -.+....++.+++..+.|++....- +..+..||||.+|+|.|||.|..+|+||+|||||.|+|..+..+|
T Consensus 365 ~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~----~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eI 440 (500)
T COG1129 365 RFSRRGLIDRRKERALAERYIRRLRIKTPSP----EQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEI 440 (500)
T ss_pred hhccccccChHHHHHHHHHHHHhcCcccCCc----cchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHH
Confidence 3221 2344555567888889998864321 122457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 867 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 867 ~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.+.+++++++|++||+++-... |+..+.|+
T Consensus 441 y~li~~lA~~G~ail~iSSElp-Ell~~~DR 470 (500)
T COG1129 441 YRLIRELAAEGKAILMISSELP-ELLGLSDR 470 (500)
T ss_pred HHHHHHHHHCCCEEEEEeCChH-HHHhhCCE
Confidence 9999999999999999998753 88888888
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-48 Score=433.69 Aligned_cols=425 Identities=21% Similarity=0.324 Sum_probs=326.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCccc----ceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ----RTAAYISQHDIHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+.||+|+||||||||+++|.|.++|+ +|+|.++|+++.-..++ .-||+|.||..+++++||.|||..+..-..
T Consensus 32 IHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~ 108 (501)
T COG3845 32 IHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSK 108 (501)
T ss_pred EEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccc
Confidence 46899999999999999999999998 99999999998655543 468999999999999999999998764210
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
. .+. + ..++.+.++++.+.+||+-..|.+|++ ||-||||||.|-
T Consensus 109 ~-~~~-------------------~-----------~~~~~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRVEIl 152 (501)
T COG3845 109 G-GLI-------------------D-----------RRQARARIKELSERYGLPVDPDAKVAD-----LSVGEQQRVEIL 152 (501)
T ss_pred c-ccc-------------------C-----------HHHHHHHHHHHHHHhCCCCCccceeec-----CCcchhHHHHHH
Confidence 0 000 0 011234567889999999999988886 999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHHH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQF 236 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~~ 236 (1245)
++|+.+|++|||||||+-|-|....++++.|+++++ .|.+|+.|||...|+.+.|||+.||.+||++-.-++ ..
T Consensus 153 KaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~--~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~--~~-- 226 (501)
T COG3845 153 KALYRGARLLILDEPTAVLTPQEADELFEILRRLAA--EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP--VA-- 226 (501)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecC--CC--
Confidence 999999999999999999999999999999999986 477888899999999999999999999997632210 00
Q ss_pred HHhCCCCCCCCCChhhHHHHhcCccchhhhhhcCCCCCccCCHHHHHHHHHhchhhhhhhhhhCCCCCCCCCCCcccccC
Q 000872 237 FISMGFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTR 316 (1245)
Q Consensus 237 f~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1245)
+ .+.+++.+
T Consensus 227 -------------------------~--------------~t~~ela~-------------------------------- 235 (501)
T COG3845 227 -------------------------E--------------TTEEELAE-------------------------------- 235 (501)
T ss_pred -------------------------C--------------CCHHHHHH--------------------------------
Confidence 0 00000000
Q ss_pred CCcccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHHhhHHH
Q 000872 317 KYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAE 396 (1245)
Q Consensus 317 ~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~li~g~~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~ 396 (1245)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T COG3845 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcchhHHHhhhCCCCChhhHHHHHHHHHhhHHHHHHHHHHhhhhhccccccChhHHHHHHHHHHHHHHHHHHHHH
Q 000872 397 ISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFR 476 (1245)
Q Consensus 397 ~~~~~~~~~vf~~er~~~~y~~~~y~la~~~~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~l~~~~~~~~~~~~~~ 476 (1245)
.|+
T Consensus 236 -------------------------------------------------lMv---------------------------- 238 (501)
T COG3845 236 -------------------------------------------------LMV---------------------------- 238 (501)
T ss_pred -------------------------------------------------Hhc----------------------------
Confidence 000
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHhccccCcCCccccchhhhhhCHHHHHHHHHHHhhcCCCcccccCCCCCCcchHH
Q 000872 477 LIAAVGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKPLGIE 556 (1245)
Q Consensus 477 ~i~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~isp~~y~~~al~~~ef~~~~~~~~~~~~~~~~g~~ 556 (1245)
| ..
T Consensus 239 ---------------------------G-----------------------------------~~--------------- 241 (501)
T COG3845 239 ---------------------------G-----------------------------------RE--------------- 241 (501)
T ss_pred ---------------------------C-----------------------------------Cc---------------
Confidence 0 00
Q ss_pred HhhhcCccccCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccccCCCccccccccCCCCcccc
Q 000872 557 VLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITR 636 (1245)
Q Consensus 557 ~l~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1245)
+..
T Consensus 242 -----------------------------------------------------------------------------v~~ 244 (501)
T COG3845 242 -----------------------------------------------------------------------------VVL 244 (501)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 000
Q ss_pred ccchhhhhhccCCCCcccccccCCCccCCCCccCCCCeEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeE
Q 000872 637 SESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVL 716 (1245)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~ 716 (1245)
. . . . .+... ...-++++|++...+. ....+++|||++++||+
T Consensus 245 ~--------~---------~--~-~~~~p------g~~vL~V~~L~v~~~~------------~~~~v~~vs~~Vr~GEI 286 (501)
T COG3845 245 R--------V---------V--K-PPSTP------GEVVLEVEDLSVKDRR------------GVTAVKDVSFEVRAGEI 286 (501)
T ss_pred c--------c---------c--c-CCCCC------CCeEEEEeeeEeecCC------------CCceeeeeeeEEecCcE
Confidence 0 0 0 0 00000 0225777887764321 13579999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC----Ccc-cccceEEEEccCCC---CCCCCCHHHHHHHHHHh
Q 000872 717 TALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK----NQE-TFTRISGYCEQNDI---HSPYVTVYESLLYSAWL 788 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~----~~~-~~~~~~~~v~q~~~---~~~~ltv~e~l~~~~~l 788 (1245)
+||.|-.|.|.+.|+.+|+|..+.. +|+|.++|.++ +.. ..+.-++|||+|-. +.+.+|+.||+.+...-
T Consensus 287 vGIAGV~GNGQ~eL~eaisGlr~~~--~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~ 364 (501)
T COG3845 287 VGIAGVAGNGQSELVEAISGLRKPA--SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHD 364 (501)
T ss_pred EEEEecCCCCHHHHHHHHhCCCccC--CceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcc
Confidence 9999999999999999999976432 59999999986 222 23345899999763 45789999999876543
Q ss_pred cCC----CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHH
Q 000872 789 RLS----SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 864 (1245)
Q Consensus 789 r~~----~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~ 864 (1245)
+.| .-....+.++...+++++++.....-. ...+.||||++||+-+||||.++|++|+..+||.|||..+..
T Consensus 365 ~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~ 440 (501)
T COG3845 365 KKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD----APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIE 440 (501)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCccCCCCC----cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHH
Confidence 211 123445667788999999988732211 124679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 865 VVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 865 ~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.|.+.|.+.++.|+.|++++-+.. +++++-|+
T Consensus 441 ~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDr 472 (501)
T COG3845 441 FIHERLLELRDAGKAVLLISEDLD-EILELSDR 472 (501)
T ss_pred HHHHHHHHHHhcCCEEEEEehhHH-HHHHhhhe
Confidence 999999999999999999999875 88999898
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-48 Score=479.22 Aligned_cols=185 Identities=18% Similarity=0.229 Sum_probs=142.1
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++.+. +++.+|+|+|+.|++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc--
Confidence 478899988762 123599999999999999999999999999999999998654 4799998762
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHH
Q 000872 755 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 755 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGer 833 (1245)
..+||++|+. ...+++.++.........+ .. .++.++++++.+|+.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~----~~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GV----PEQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CC----CHHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 3589999975 2345666654322111111 11 1345788999999973 44443 346999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 834 qr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||++||++|+.+|++|+|||||+|||..+...+.+.|++. +.|||+++|++. .+-...|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~dr 693 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDE 693 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999888764 349999999975 33344554
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=348.80 Aligned_cols=203 Identities=26% Similarity=0.411 Sum_probs=172.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC----cccceEEEeccccccCCCCCHHHHHHHHHhc-c
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF----VPQRTAAYISQHDIHIGEMTVRETLAFSARC-Q 75 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~-~ 75 (1245)
+++|+|||||||||||++|.|+.+++ +|+|.++|.++... ..++.+|+|+|+..|||.+||.||+..+... +
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~ 106 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVK 106 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHc
Confidence 47899999999999999999999988 99999999766322 2367899999999999999999999986531 1
Q ss_pred CCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHH
Q 000872 76 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTT 155 (1245)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~i 155 (1245)
+ . ...++++.+.++|+.+||.+.+|.+.+ +|||||||||+|
T Consensus 107 ~----------~------------------------~k~eA~~~A~~lL~~VGL~~ka~~yP~-----qLSGGQqQRVAI 147 (240)
T COG1126 107 K----------L------------------------SKAEAREKALELLEKVGLADKADAYPA-----QLSGGQQQRVAI 147 (240)
T ss_pred C----------C------------------------CHHHHHHHHHHHHHHcCchhhhhhCcc-----ccCcHHHHHHHH
Confidence 1 0 112234556779999999999987765 599999999999
Q ss_pred HHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 156 GEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 156 a~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
||||+.+|+++++|||||+|||....++++.++++++ .|.|++++||....+.+.+|||+.|++|+++++|+++++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~--eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~-- 223 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE--EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF-- 223 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH--cCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHH--
Confidence 9999999999999999999999999999999999987 478888899999999999999999999999999998876
Q ss_pred HHHhCCCCCCCCCChhhHHH
Q 000872 236 FFISMGFKCPKRKGIADFLQ 255 (1245)
Q Consensus 236 ~f~~~G~~~~~~~~~~~~~~ 255 (1245)
|..|++.-..+|+.
T Consensus 224 ------f~~p~~~R~~~FL~ 237 (240)
T COG1126 224 ------FDNPKSERTRQFLS 237 (240)
T ss_pred ------hcCCCCHHHHHHHH
Confidence 34555544555554
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=338.01 Aligned_cols=191 Identities=26% Similarity=0.367 Sum_probs=168.2
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|++.++ +...+|+|||++|++||+++|+|||||||||||+||.+...+ .+|+|.+||.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~--~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP--DSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC--CCceEEECCEecc
Confidence 5566666544 456799999999999999999999999999999999997654 4899999997653
Q ss_pred ----cccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000872 756 ----QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 831 (1245)
Q Consensus 756 ----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 831 (1245)
-...|+.+|+|+|+-.+||.+||.||+..+...- ...++++.++...++|+.+||.+.+|... ..||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcH
Confidence 2356788999999999999999999999875332 24567778888999999999999999874 469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 832 erqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
|||||+|||||+-+|+++++|||||.|||+...++.+.+++++++|.|.||+||...
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~ 197 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG 197 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH
Confidence 999999999999999999999999999999999999999999999999999999765
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=368.28 Aligned_cols=176 Identities=18% Similarity=0.232 Sum_probs=134.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++.++. +..++++++|-|.+++.+|++||||+||||||+++.|...+ ..|.|.-.-+.
T Consensus 389 vi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H~- 453 (614)
T KOG0927|consen 389 VIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSHN- 453 (614)
T ss_pred eEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--ccccccccccc-
Confidence 5778888876642 22689999999999999999999999999999999997654 36665443221
Q ss_pred CcccccceEEEEccC--CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000872 755 NQETFTRISGYCEQN--DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 832 (1245)
Q Consensus 755 ~~~~~~~~~~~v~q~--~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGe 832 (1245)
..++..|. +.+.-..++-|+++-.. ..+.+.+.+..++...||..-.+.. ..+.||+||
T Consensus 454 -------~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gq 514 (614)
T KOG0927|consen 454 -------KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQ 514 (614)
T ss_pred -------cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccccc----chhhccccc
Confidence 22333443 23334567777764221 1133455688899999999554433 246799999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000872 833 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQP 887 (1245)
Q Consensus 833 rqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p 887 (1245)
|+||..|+.++..|.+|+|||||+|||..+...+.+.|.+. ..+||+++|+-
T Consensus 515 r~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDf 566 (614)
T KOG0927|consen 515 RRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDF 566 (614)
T ss_pred chhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechh
Confidence 99999999999999999999999999999999999999765 46899999974
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=349.09 Aligned_cols=207 Identities=27% Similarity=0.398 Sum_probs=178.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
+.+|+|+||||||||++++.++..|+ +|+|.++|.++.... .++.||+++|+..++.+.||.||+.|..++
T Consensus 34 I~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLei 110 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLEL 110 (339)
T ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhh
Confidence 47999999999999999999999998 999999998876554 257899999999999999999999998876
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.+.+ + .+.+.++.++++.+||++.++.+.. +|||||||||+
T Consensus 111 ag~~----------k------------------------~ei~~RV~elLelVgL~dk~~~yP~-----qLSGGQKQRVa 151 (339)
T COG1135 111 AGVP----------K------------------------AEIKQRVAELLELVGLSDKADRYPA-----QLSGGQKQRVA 151 (339)
T ss_pred cCCC----------H------------------------HHHHHHHHHHHHHcCChhhhccCch-----hcCcchhhHHH
Confidence 5421 1 1234567789999999999986654 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
|||||+.+|+||++|||||+|||.+...|++.|+++.+.. +.||++|+|.++.+.+.||||.||++|++++.|+..++
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-glTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v- 229 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV- 229 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh-
Confidence 9999999999999999999999999999999999998764 77888899999999999999999999999999998887
Q ss_pred HHHHhCCCCCCCCCChhhHHHHhc
Q 000872 235 QFFISMGFKCPKRKGIADFLQEVT 258 (1245)
Q Consensus 235 ~~f~~~G~~~~~~~~~~~~~~~~~ 258 (1245)
|..|++.-..+|+.+..
T Consensus 230 -------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 230 -------FANPKHAITQEFIGETL 246 (339)
T ss_pred -------hcCcchHHHHHHHHhhc
Confidence 34555555555555443
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=341.38 Aligned_cols=202 Identities=27% Similarity=0.424 Sum_probs=171.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.++. + ++|+|||+++++|++++|+||||||||||++++.|..++ .+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~~------------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p--~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYGN------------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEECC------------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CcceEEEccccc
Confidence 5788999988741 2 599999999999999999999999999999999997664 489999999876
Q ss_pred CcccccceEEEEccCCCC--CCCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 755 NQETFTRISGYCEQNDIH--SPYVTVYESLLYSAWLRLS--SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 755 ~~~~~~~~~~~v~q~~~~--~~~ltv~e~l~~~~~lr~~--~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
....-+..+|||||.... ..-+||+|-+..+..-+.. ...+ ++.++.++++|+.+|+.+.+|..+| .|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 654445789999995422 2237999999876433321 1223 3336779999999999999998876 5999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhc
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAG 898 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~~ 898 (1245)
||+||+.|||||+++|++|+|||||+|+|+.++..+.+.|++++++|+||++++|+++ .+.+.||+.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~v 209 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRV 209 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEE
Confidence 9999999999999999999999999999999999999999999988999999999997 677889983
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=335.79 Aligned_cols=186 Identities=28% Similarity=0.414 Sum_probs=159.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc------c-cccceEEEEccCCCCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ------E-TFTRISGYCEQNDIHS 773 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~------~-~~~~~~~~v~q~~~~~ 773 (1245)
..+|+++|+.|++||++||||||||||||||++|.|...+ .+|.|.++|.+... . .+++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 5799999999999999999999999999999999997665 58999999987642 1 2345699999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccc-ccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEe
Q 000872 774 PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ-ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 852 (1245)
Q Consensus 774 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lD 852 (1245)
|.+||+||+.+...+... ...++++.++++++.+||.+..+ .. +..|||||||||+|||||+.+|++++.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 999999999987665532 22256677899999999997655 43 3479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhc
Q 000872 853 EPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDAG 898 (1245)
Q Consensus 853 EpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~~ 898 (1245)
|||..||+.++..|++.++++.++ |+|||++||+|. +-+..|+.
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~ 212 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRV 212 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEE
Confidence 999999999999999999999765 899999999985 44677763
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=335.75 Aligned_cols=197 Identities=25% Similarity=0.386 Sum_probs=171.1
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++++++.+. ...+|+|+|++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccc
Confidence 356777776653 25799999999999999999999999999999999998764 489999999887
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000872 755 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834 (1245)
Q Consensus 755 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerq 834 (1245)
. .-...++||+|++.++|-+||+||+.++...+. .+++++++++++.++.+||.+..|... +.|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHH
Confidence 3 234678999999999999999999999887663 456667778999999999999998764 579999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhh
Q 000872 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 835 r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||+|||||+.+|+||+||||.++||+.|+..+++.|.++.+ .++||+++||+....++ +=|+
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~-LsdR 200 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVY-LADR 200 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHh-hhCE
Confidence 99999999999999999999999999999999999999864 48999999999875544 4565
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=357.63 Aligned_cols=187 Identities=33% Similarity=0.471 Sum_probs=168.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCC
Q 000872 700 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ--ETFTRISGYCEQNDIHSPYVT 777 (1245)
Q Consensus 700 ~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lt 777 (1245)
++.+|+||||+|++||++|++||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT 94 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELT 94 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCccCHHHHHhheEEEccCCCCCcccc
Confidence 46799999999999999999999999999999999998765 58999999988754 456788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCC
Q 000872 778 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 857 (1245)
Q Consensus 778 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsg 857 (1245)
|+|+|.|.+.++.+.. ...+++++++++.+||.+.++.. +++||+|||||++||+||+++|++|||||||+|
T Consensus 95 ~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~G 166 (293)
T COG1131 95 VRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGMKQRLSIALALLHDPELLILDEPTSG 166 (293)
T ss_pred HHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcC
Confidence 9999999999986543 45567899999999999855444 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHHHhhh
Q 000872 858 LDARAAAVVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 858 LD~~~~~~i~~~l~~~~~~g-~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||+.++..+.+.|++++++| +||++++|+++ ++.+.+|+
T Consensus 167 LDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~ 206 (293)
T COG1131 167 LDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDR 206 (293)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCE
Confidence 99999999999999999887 79999999997 66677887
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=329.48 Aligned_cols=194 Identities=25% Similarity=0.400 Sum_probs=168.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+++++|||||||||+||+|.++++|+ +|+|.+||+++.+.. .++.||||-|+..+||++||.|||.+-..+.+-
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w 105 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW 105 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCC
Confidence 36899999999999999999999998 999999999987654 468899999999999999999999986655431
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
. + ++.+.+++++++.+||+.. ...++.++.|||||+|||.+||
T Consensus 106 ~----------k------------------------~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 106 D----------K------------------------ERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred C----------H------------------------HHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHHHHHH
Confidence 0 0 1234467889999999752 1124666789999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
||+.+|+|+++|||+++|||.++..+.+-++++.+.. ++||+.+||+.+|+.+++|||++|++|+++..++++++..
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l-~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999999999998765 5677889999999999999999999999999999999854
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=338.93 Aligned_cols=192 Identities=28% Similarity=0.461 Sum_probs=165.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCc---cCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGH---DMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~---~~~~~~~-~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~ 76 (1245)
++|++|||||||||||++|+|+..|+ +|.|.+||+ +.+.... .|+||||+|+..+|+.|||.|||.|+.+.+.
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~ 106 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK 106 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc
Confidence 47999999999999999999999998 999999999 6555333 4789999999999999999999999987641
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
. + +. ..+.+..++++|+...|++.++ +.+.+|||||||||++|
T Consensus 107 ~--~---p~---------------------------~~~~r~rv~elL~lvqL~~la~-----ryP~QLSGGQrQRVALA 149 (345)
T COG1118 107 E--R---PS---------------------------EAEIRARVEELLRLVQLEGLAD-----RYPAQLSGGQRQRVALA 149 (345)
T ss_pred c--C---CC---------------------------hhhHHHHHHHHHHHhcccchhh-----cCchhcChHHHHHHHHH
Confidence 0 0 00 0112345677888888887665 55567999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
|||+..|++|+||||+++||++.+..+.++|+++.+.. +.+.+.+||+.+|++++||||++|++|+|...|+++++
T Consensus 150 RALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~-~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 150 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRL-GVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhh-CceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 99999999999999999999999999999999997754 45556699999999999999999999999999999988
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=335.01 Aligned_cols=195 Identities=23% Similarity=0.332 Sum_probs=169.4
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
+++++++..+... ......+|+|||++|++||++||+|+||||||||++++.+...+ .+|+|.+||.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecc
Confidence 4667776544321 11235699999999999999999999999999999999997654 4899999997754
Q ss_pred c------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000872 756 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 829 (1245)
Q Consensus 756 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 829 (1245)
. ...|+.+|+++|+..++...||.||+.|...+.. .++++++++|.++++.+||.+.++... .+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYP-----AQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCc-----hhcC
Confidence 3 3467889999999999999999999999887763 678899999999999999999888764 4799
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCC
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPS 888 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~ 888 (1245)
|||||||+|||||+.+|+||++|||||+|||+|...|.+.|+++.++ |.||++++|++.
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~ 203 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME 203 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 99999999999999999999999999999999999999999998654 999999999873
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=354.24 Aligned_cols=190 Identities=29% Similarity=0.448 Sum_probs=170.5
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSR 80 (1245)
Q Consensus 2 ~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~ 80 (1245)
++|+|||||||||||++|+|+.+|+ +|+|.++|+++++..+ +|.+|+|+|+..++|.|||+||+.|+.+.++...
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k- 107 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK- 107 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCch-
Confidence 6899999999999999999999988 9999999999998766 4789999999999999999999999988754210
Q ss_pred cchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHHh
Q 000872 81 YDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV 160 (1245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1245)
.+.+++++++.+.|+|++..|.++. +|||||||||+|||||+
T Consensus 108 ---------------------------------~ei~~rV~eva~~L~l~~lL~r~P~-----~LSGGQrQRVAlaRAlV 149 (338)
T COG3839 108 ---------------------------------AEIDKRVKEVAKLLGLEHLLNRKPL-----QLSGGQRQRVALARALV 149 (338)
T ss_pred ---------------------------------HHHHHHHHHHHHHcCChhHHhcCcc-----cCChhhHHHHHHHHHHh
Confidence 1234567889999999999886654 69999999999999999
Q ss_pred cCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 161 GPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
.+|++++||||+|.||++.+..+...++++.+.. ++|++.+||+..|+..++|||++|++|++...|++.++-
T Consensus 150 r~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l-~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 150 RKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL-GTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred cCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhc-CCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 9999999999999999999999999999987654 567778999999999999999999999999999999883
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=331.31 Aligned_cols=177 Identities=25% Similarity=0.372 Sum_probs=155.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSR 80 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~ 80 (1245)
+++|+||||||||||||+|+|+.+|+ +|+|.++|.++ ..+...++||+|++.++|.+||+||+.|+....+...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v--~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~- 104 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPV--TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSK- 104 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccc--CCCCCCEEEEeccCcccchhhHHhhheehhhccccch-
Confidence 47999999999999999999999988 99999999987 3355679999999999999999999999887643110
Q ss_pred cchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHHh
Q 000872 81 YDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV 160 (1245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1245)
.+.+.++++.++..||.+..|... ++|||||||||+|||||+
T Consensus 105 ---------------------------------~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 105 ---------------------------------AEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQRVAIARALA 146 (248)
T ss_pred ---------------------------------HhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHHHHHHHHHHh
Confidence 111235678999999999887655 469999999999999999
Q ss_pred cCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCC
Q 000872 161 GPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDG 222 (1245)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G 222 (1245)
.+|++|+||||+++||+.|+.++.+.|.++.+. .++|++++||+.+|+..++|||++|+++
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~-~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEE-TRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh-hCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999999988775 4678888999999999999999999984
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=308.99 Aligned_cols=177 Identities=28% Similarity=0.369 Sum_probs=160.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc------ccccceEEEEccCCCCCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ------ETFTRISGYCEQNDIHSP 774 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~~~~ 774 (1245)
+++|+|||++|++||++-|+|||||||||||++|.+...+ ..|+|.+||.++.. ..+||.+|+|+||..+++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p--t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~ 92 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP--TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC--CCceEEECCeecccccccccchhhheeeeEeeeccccc
Confidence 5699999999999999999999999999999999997554 48999999998643 246789999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCC
Q 000872 775 YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 854 (1245)
Q Consensus 775 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEp 854 (1245)
..||.||+.|..... +.+..+.+++|.++|+.+||.+.++.. ...||||||||++||||++.+|++|+.|||
T Consensus 93 ~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LSGGEQQRvaIARAiV~~P~vLlADEP 164 (223)
T COG2884 93 DRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARAL-----PSQLSGGEQQRVAIARAIVNQPAVLLADEP 164 (223)
T ss_pred cchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcC-----ccccCchHHHHHHHHHHHccCCCeEeecCC
Confidence 999999999987766 345667778899999999999988765 347999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000872 855 TSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQP 887 (1245)
Q Consensus 855 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p 887 (1245)
|-+||+..+..|++.+.++.+.|.||++.||+-
T Consensus 165 TGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~ 197 (223)
T COG2884 165 TGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL 197 (223)
T ss_pred CCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH
Confidence 999999999999999999988899999999974
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=335.59 Aligned_cols=202 Identities=29% Similarity=0.409 Sum_probs=170.3
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++.+|+++.|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.+||.++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCch
Confidence 467888888763 45799999999999999999999999999999999997664 389999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSE-VNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~-~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
.. ..+.+.++|+||.......+||+|.+.++..-..... ...++.++.++++++.+|+.+.++..+ ..|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 43 4567889999999988889999999987643221111 123444457999999999999998775 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||+.|||||+++|+||+||||||+||...+.++++.++++.+ +|+|||+++|++.-. ...-|+
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A-~ryad~ 208 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLA-ARYADH 208 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HHhCCE
Confidence 999999999999999999999999999999999999999999984 599999999999743 344454
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=321.74 Aligned_cols=193 Identities=25% Similarity=0.416 Sum_probs=164.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+|||||||||||++|.|+++|+ +|+|.++|+++.... .++++|+++|+-.+|.++||+||+.|..+-
T Consensus 36 i~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre 112 (263)
T COG1127 36 ILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE 112 (263)
T ss_pred EEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh
Confidence 47999999999999999999999998 999999999986543 246799999999999999999999996543
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCccc-ccccccCccccccccccchhh
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVC-ADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv 153 (1245)
+.. +|+. ..++.+..-++..||... ++. .+..||||+|||+
T Consensus 113 ~~~-------------------lp~~--------------~i~~lv~~KL~~VGL~~~~~~~-----~PsELSGGM~KRv 154 (263)
T COG1127 113 HTK-------------------LPES--------------LIRELVLMKLELVGLRGAAADL-----YPSELSGGMRKRV 154 (263)
T ss_pred hcc-------------------CCHH--------------HHHHHHHHHHHhcCCChhhhhh-----CchhhcchHHHHH
Confidence 210 0110 122345567788899875 554 4456999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+||||++.||+++++||||+||||.++..+-++++++.+.. +.|++++||+.++++..||++++|.+|+|++.|+++++
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~l-g~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL-GLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhh-CCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999998765 56677799999999999999999999999999999998
Q ss_pred HH
Q 000872 234 EQ 235 (1245)
Q Consensus 234 ~~ 235 (1245)
.+
T Consensus 234 ~~ 235 (263)
T COG1127 234 LA 235 (263)
T ss_pred Hh
Confidence 54
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=312.11 Aligned_cols=191 Identities=31% Similarity=0.406 Sum_probs=170.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+++|+|||||||||+|++|++++.|+ +|.|+++|.+..... .++.+|.++.+..++..+|++|||.|.+++.++.
T Consensus 30 i~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~ 106 (245)
T COG4555 30 ITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS 106 (245)
T ss_pred EEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhh
Confidence 58999999999999999999999998 999999998875433 3688999998889999999999999998875421
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
+.+.+.+++++.+.|+|.++.|+.+|+ +|-|+||||+||||
T Consensus 107 ----------------------------------~~~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iARA 147 (245)
T COG4555 107 ----------------------------------RKEIKARIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIARA 147 (245)
T ss_pred ----------------------------------hhHHHHHHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHHHH
Confidence 122345678899999999999999985 99999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
|+++|++++|||||||||..+...+.+.+++++. .+++++..+|.++++.++||+|+++++|++++.|+.+++..
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~--egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc--CCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999999999998865 46778889999999999999999999999999999887754
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=352.64 Aligned_cols=206 Identities=29% Similarity=0.455 Sum_probs=178.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++++|||||||||||++|+|...|+ +|+|.++|++++...+ +|.+++|+|+..+||.|||+||+.|+.+.+....
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~ 109 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLK 109 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCC
Confidence 36899999999999999999999998 9999999999988766 5789999999999999999999999987432100
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
..+.+++++++++.++|++.++.+ +..|||||||||+|||||
T Consensus 110 ---------------------------------~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQqQRVALARAL 151 (352)
T COG3842 110 ---------------------------------KAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQQRVALARAL 151 (352)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHHHHHHHHHHh
Confidence 011235678899999999877654 456999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHHHHHh
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFIS 239 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~~f~~ 239 (1245)
+.+|++||||||.|+||.+-+.++..-|+++.+.. +.|.+.+||+.+|++.++|||+||++|+|...|+++++
T Consensus 152 ~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei------ 224 (352)
T COG3842 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI------ 224 (352)
T ss_pred hcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHH------
Confidence 99999999999999999999999999999998765 67778899999999999999999999999999999998
Q ss_pred CCCCCCCCCChhhHHHH
Q 000872 240 MGFKCPKRKGIADFLQE 256 (1245)
Q Consensus 240 ~G~~~~~~~~~~~~~~~ 256 (1245)
|..|...-.++|+.+
T Consensus 225 --Y~~P~~~fVA~FiG~ 239 (352)
T COG3842 225 --YERPATRFVADFIGE 239 (352)
T ss_pred --hhCcchHHHHHHhCc
Confidence 455665556666654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=337.33 Aligned_cols=195 Identities=31% Similarity=0.456 Sum_probs=166.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+++|+||||||||||||+|+|.++|. +|+|.++|+++..... .+.+|||||.+...+.+||+|-+.++..-+.
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~- 105 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHL- 105 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccc-
Confidence 58999999999999999999999988 9999999999877654 4789999999988899999999998643210
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
.+... ...+.++.+++.++.+|+.+.++..+. .||||||||+.|||
T Consensus 106 -~~~~~----------------------------~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iAr 151 (258)
T COG1120 106 -GLFGR----------------------------PSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIAR 151 (258)
T ss_pred -ccccC----------------------------CCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHH
Confidence 11100 001112357788999999999986665 59999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
||+++|+||+||||||+||...+.++++.++++++. .+.|++++.|+.+.+..+||++++|++|+++.+|+++++.
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~-~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE-KGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999999999999999999865 4677888999999999999999999999999999988763
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=310.14 Aligned_cols=195 Identities=23% Similarity=0.327 Sum_probs=166.2
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCeeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT---RGYITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~---~~~~~G~i~~~g 751 (1245)
.++.+|+++.+ +.+.+|+|||+.|++++++|++|||||||||||++|.+..+ .-.++|+|.++|
T Consensus 7 ~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 56778887765 34579999999999999999999999999999999998543 236899999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.++-. ..+|+.+|.|+|.+.-|| +|++||+.|+.++..-.+ ++-++.|++.|+...|++-........ ..
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s-a~ 148 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS-AL 148 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC-cc
Confidence 87633 357889999999999999 999999999988775433 677888999999999986443333222 34
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
+|||||+|||||||+|+-+|+||+||||||+|||.+...|-+++.++. +.-|||++||.+.
T Consensus 149 ~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq 209 (253)
T COG1117 149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ 209 (253)
T ss_pred CCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH
Confidence 699999999999999999999999999999999999999999999997 5799999999764
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=316.97 Aligned_cols=200 Identities=29% Similarity=0.404 Sum_probs=173.7
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+++++++.+. +.+.+++|||++|++||+++||||||+||||||+++.|...+ .+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcch
Confidence 57888887654 456899999999999999999999999999999999998775 489999999886
Q ss_pred Cc------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCc
Q 000872 755 NQ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-RQALVGLPGVNG 827 (1245)
Q Consensus 755 ~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~ 827 (1245)
.. ...++..|+++|+-.+|..+||+||+.|. +|...+.+++..++.+..-++.+||... .+.. ...
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp--lre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP--LREHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhhee--hHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 43 13567799999999999999999999875 3444566778888889999999999886 4543 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 828 lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||+|||++||||++.||+++|+||||+||||.++..+-+.|+++.++ |.|++++|||.. +++...|+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Dr 215 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADR 215 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhce
Confidence 9999999999999999999999999999999999999999999999766 899999999976 56777777
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=304.51 Aligned_cols=190 Identities=23% Similarity=0.383 Sum_probs=165.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
++||+||||||||||||+|+|...|. +|+|.+||.+.+...+ +|.++.++|++.+|..+||.+|+-++..-. -
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~---L 100 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG---L 100 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc---c
Confidence 48999999999999999999999988 9999999999876655 578999999999999999999999875311 0
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
++...+ ++.++.++...||..+.+...++ |||||||||++||+|
T Consensus 101 ------kL~a~~-------------------------r~~v~~aa~~vGl~~~~~RLP~~-----LSGGqRQRvALARcl 144 (231)
T COG3840 101 ------KLNAEQ-------------------------REKVEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCL 144 (231)
T ss_pred ------ccCHHH-------------------------HHHHHHHHHHhChhhHhhhCccc-----cCchHHHHHHHHHHH
Confidence 011111 23467788999999999877764 999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+.+-+|++||||+|+|||.-+.++...+.+++.. ++.|++++||+.+++...+|+++++++|+|.++|+.++.
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E-~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~ 217 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDE-RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQEL 217 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh-hCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHH
Confidence 9999999999999999999999999999999875 567777888999999999999999999999999998775
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=349.40 Aligned_cols=194 Identities=32% Similarity=0.483 Sum_probs=169.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+++++||||||||||||+|+|.++|+ +|+|.++|.+.... ..++.+||++|++.+++.+||+||+.|.+.+++..
T Consensus 33 i~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~ 109 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS 109 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC
Confidence 57999999999999999999999987 99999999887653 34578999999999999999999999998876531
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
. ...++.++++++.+||++..+.++ ++||+|||||++||+|
T Consensus 110 ~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~a 150 (293)
T COG1131 110 K----------------------------------EEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALA 150 (293)
T ss_pred h----------------------------------hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHH
Confidence 1 001235678999999998555444 4699999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHHHH
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFF 237 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~~f 237 (1245)
|+++|+++||||||+||||.++..+++.|+++++. ++++|+++||..+++..+||+|++|++|++++.|+.+++...+
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 99999999999999999999999999999999874 4478888999999999999999999999999999988876644
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=363.96 Aligned_cols=201 Identities=22% Similarity=0.344 Sum_probs=171.1
Q ss_pred eEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCee
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 753 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~ 753 (1245)
..++++|++..+.. +++.+|+|+|+.+++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCEE
Confidence 46888998876631 234699999999999999999999999999999999998664 48999999998
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000872 754 KNQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 831 (1245)
Q Consensus 754 ~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 831 (1245)
+.. ...++.+|||+|++.+++.+||+|++.|.++++. ...++.+++++++++.+||.+..+..+ +.||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 743 2345679999999999999999999999877653 233445567899999999998877664 469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 832 erqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||+||+||+.+|+||+|||||+|||+.+++.+++.|++++ +|+|||+++|++. ++-...|+
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDr 1129 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDR 1129 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999985 5999999999985 44455676
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=316.35 Aligned_cols=198 Identities=25% Similarity=0.370 Sum_probs=173.5
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++|+|++..+ ..+.+++|+|++|++||.+.++|||||||||+|++|.+..++ .+|+|.+||.++.
T Consensus 2 I~~~nvsk~y-------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRY-------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhc-------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecc
Confidence 4677776544 356799999999999999999999999999999999998765 4899999999875
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCcCCH
Q 000872 756 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP--LRQALVGLPGVNGLST 830 (1245)
Q Consensus 756 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~~g~~~~~~lSg 830 (1245)
. ..+|+.+|||-|...+||.+||.||+.+-..+. ..++++.+++++|+++.+||.+ +.+.. .+.|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 467899999999999999999999998776655 4577888899999999999975 55544 467999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||+|||.+||||+.+|+||++|||.+.||+-++..+++-++++.++ |+|||++||+-. |-+.+-|+
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadr 205 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADR 205 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhce
Confidence 9999999999999999999999999999999999999999998755 999999999875 55677787
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=308.94 Aligned_cols=206 Identities=25% Similarity=0.417 Sum_probs=161.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCccCCCCc-----ccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD--SSLKASGKVTYNGHDMHEFV-----PQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+||++|||||||||||+++....+ |..+++|+|.++|+++.... .++++|+|+|.|.-|| +|++||+.++.+
T Consensus 35 VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r 113 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLR 113 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHH
Confidence 589999999999999999988654 44578999999999985542 3688999999999888 999999999998
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcc-cccccccCccccccccccchh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV-CADTVVGDEMLRGISGGQRKR 152 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqR 152 (1245)
+++..+ + + + ++++|..|+.-+|=+ +.|.. ++...+|||||+||
T Consensus 114 ~~g~~~--~---~---------------l--------------deiVe~sLk~AaLWdEVKDrL--~~sa~~LSGGQQQR 157 (253)
T COG1117 114 LHGIKD--K---E---------------L--------------DEIVESSLKKAALWDEVKDRL--HKSALGLSGGQQQR 157 (253)
T ss_pred hhccch--H---H---------------H--------------HHHHHHHHHHhHhHHHhHHHh--hCCccCCChhHHHH
Confidence 876422 0 0 0 111222222222211 11111 11223599999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhh
Q 000872 153 VTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEH 232 (1245)
Q Consensus 153 v~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~ 232 (1245)
++|||||.-+|+|||||||||+|||.+...|.+++.++++ .-||+++||++..+....|+...+..|++++.|+.++
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 9999999999999999999999999999999999999874 4577889999999999999999999999999999988
Q ss_pred HHHHHHhCCCCCCCCCChhhHH
Q 000872 233 VEQFFISMGFKCPKRKGIADFL 254 (1245)
Q Consensus 233 ~~~~f~~~G~~~~~~~~~~~~~ 254 (1245)
+ |..|++....||+
T Consensus 235 i--------F~~P~~~~TedYi 248 (253)
T COG1117 235 I--------FTNPKHKRTEDYI 248 (253)
T ss_pred h--------hcCccHHHHHHHh
Confidence 7 4556666555554
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=325.69 Aligned_cols=193 Identities=25% Similarity=0.411 Sum_probs=162.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEecccc--ccCCCCCHHHHHHHHHhccCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHD--IHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~--~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+++|+||||||||||+|+|+|.++|. +|+|.++|.+......+.+||||||.. .+-...||+|.+..+...+.
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~-- 106 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKK-- 106 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccc--
Confidence 58999999999999999999999988 999999999887766667899999954 34455799999997632211
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
.+.+.. . .+.++.++++|+.+|+.+.+|..+|+ |||||+|||-||||
T Consensus 107 g~~~~~---~-------------------------~~d~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARA 153 (254)
T COG1121 107 GWFRRL---N-------------------------KKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARA 153 (254)
T ss_pred cccccc---c-------------------------HHHHHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHH
Confidence 111100 0 01134578899999999999988886 99999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
|+++|++|+|||||+|+|+.++..+.++|+++++. +++|+++||+...+.++||+|+.|++ ++++.|+++++.
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~ 226 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVL 226 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhcc
Confidence 99999999999999999999999999999999874 77888899999999999999999955 688999988763
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=337.20 Aligned_cols=199 Identities=28% Similarity=0.400 Sum_probs=176.5
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++..+. ...+|+|+|++|+.||.++|+|||||||||||++|+|...+ .+|+|.|+|.++
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~--~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP--TSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 467777765542 22299999999999999999999999999999999998664 489999999998
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000872 755 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 755 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 833 (1245)
+. ...+|.+++|+|+..++|.+||+||+.|+.+++ ..++++.+++|+++.+.|+|.+..|... +.||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhH
Confidence 76 456788999999999999999999999998776 4567888999999999999999998764 47999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 834 qr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||+|||||+++|+++++|||.|.||+..+..+...|+++.++ |.|+|.+||+.. |...+-|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladr 203 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADR 203 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCE
Confidence 9999999999999999999999999999999999999998755 899999999975 66777887
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=310.46 Aligned_cols=204 Identities=25% Similarity=0.315 Sum_probs=170.3
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++..++ +++++|+|||+.|++||++||+|+|||||||||++|.|..++ .+|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~--t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP--TSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC--CcceEEecccch
Confidence 477888876552 456799999999999999999999999999999999997654 489999999765
Q ss_pred Cc------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000872 755 NQ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-----SEVNSKTREMFVEEVMELVELNPLRQALVGLP 823 (1245)
Q Consensus 755 ~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~ 823 (1245)
.. ..+++.+||++|+..+.+.++|.||+..+..-+.+ -....++.++.+-+.|+.+|+.+.+-+..+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc--
Confidence 32 34678899999999999999999999876433322 122334555667889999999998877654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhhc
Q 000872 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDAG 898 (1245)
Q Consensus 824 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~~ 898 (1245)
.|||||+|||+|||+|+.+|+|++.|||+++||+.++..+|+.|+++.+ +|.|||++.||.... -+.+|+.
T Consensus 147 ---~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA-~~Y~~Ri 218 (258)
T COG3638 147 ---TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLA-KKYADRI 218 (258)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHH-HHHHhhh
Confidence 6999999999999999999999999999999999999999999999975 489999999997532 4567773
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=319.45 Aligned_cols=180 Identities=27% Similarity=0.426 Sum_probs=152.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-------QRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|||||||||||++|.|...|+ +|.|.++|.++..... ++.+|||+|+..++|++||+||+.+...
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence 47999999999999999999999987 9999999988865542 3679999999999999999999998776
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCccccc-ccccCccccccccccchh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCAD-TVVGDEMLRGISGGQRKR 152 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-t~vg~~~~~~LSGGqrqR 152 (1245)
+.+.... +.++..+.+++.+||++..+ ..+. .||||||||
T Consensus 110 ~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~p~-----eLSGGqqQR 150 (226)
T COG1136 110 IAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKKPS-----ELSGGQQQR 150 (226)
T ss_pred HcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCCch-----hcCHHHHHH
Confidence 5432110 11234567889999997665 4444 599999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcE
Q 000872 153 VTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQI 224 (1245)
Q Consensus 153 v~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~i 224 (1245)
|+|||||+.+|++++.||||.+||+.++..+++.++++++. .++|++++||+. ++...|||++.|.+|++
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~-~g~tii~VTHd~-~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE-RGKTIIMVTHDP-ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh-cCCEEEEEcCCH-HHHHhCCEEEEEeCCee
Confidence 99999999999999999999999999999999999999864 467788899986 56679999999999984
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=321.85 Aligned_cols=190 Identities=29% Similarity=0.431 Sum_probs=171.8
Q ss_pred CcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCe---eCCc-ccccceEEEEccCCCCCC
Q 000872 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY---PKNQ-ETFTRISGYCEQNDIHSP 774 (1245)
Q Consensus 699 ~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~~v~q~~~~~~ 774 (1245)
+...+++|||++|+.||++|++|||||||||||++|+|...+ ..|.|.+||. +.+. ....|.+|||+|+..+++
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 455689999999999999999999999999999999998765 4899999999 5444 344578999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCC
Q 000872 775 YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 854 (1245)
Q Consensus 775 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEp 854 (1245)
.+||.||+.|+..++ ...+++.+.+.+|+++|+.+.|++.++.. ...|||||||||++||||+..|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998887 44566778888999999999999998876 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 855 TSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 855 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.++||..-+..+.+.|+++.++ |.|++++||++. +.++.+|+
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladr 207 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADR 207 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcce
Confidence 9999999999999999999766 999999999986 88999998
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=311.13 Aligned_cols=200 Identities=25% Similarity=0.370 Sum_probs=166.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+|||||||||||++|.|..+|+ +|+|.+||.++.... .++.+||++|++.+.+.+||.+|+..+..-
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~ 108 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG 108 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcc
Confidence 58999999999999999999999987 999999998876543 247899999999999999999999987532
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
+. ++.+ ....+.+..| +..+-..|+.+|+.+.+.++.+. |||||+|||+
T Consensus 109 ~~--s~~~---------slfglfsk~d---------------k~~Al~aLervgi~~~A~qra~~-----LSGGQQQRVa 157 (258)
T COG3638 109 YT--STWR---------SLFGLFSKED---------------KAQALDALERVGILDKAYQRAST-----LSGGQQQRVA 157 (258)
T ss_pred cc--hHHH---------HHhCCCCHHH---------------HHHHHHHHHHcCcHHHHHHHhcc-----CCcchhHHHH
Confidence 21 1111 1111111111 22344578999999988888774 9999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
|||||+++|++++-|||+++|||.+++.+++.|++++... +.|+++..|..+.+.++||||+-|++|+|+|+||++++.
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~-g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPESAKKVMDILKDINQED-GITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence 9999999999999999999999999999999999998864 556666788899999999999999999999999998875
Q ss_pred H
Q 000872 235 Q 235 (1245)
Q Consensus 235 ~ 235 (1245)
+
T Consensus 237 ~ 237 (258)
T COG3638 237 D 237 (258)
T ss_pred H
Confidence 4
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=302.71 Aligned_cols=185 Identities=29% Similarity=0.359 Sum_probs=168.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC--cccccceEEEEccCCCCCCCCCHH
Q 000872 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN--QETFTRISGYCEQNDIHSPYVTVY 779 (1245)
Q Consensus 702 ~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~--~~~~~~~~~~v~q~~~~~~~ltv~ 779 (1245)
.+++||||+++.||++||+|+|||||||+|++|++...+ .+|.|++||.+.. +...++.+|.++.+--++..||++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 489999999999999999999999999999999998775 4899999998853 356788899999878888999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCC
Q 000872 780 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859 (1245)
Q Consensus 780 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD 859 (1245)
|||.|.+.+. +....+.+++.+++.+.++|.++.|+.+| ++|-|+||||+|||||++||++++|||||||||
T Consensus 94 Enl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 9999999886 45667778899999999999999999876 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 860 ARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 860 ~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..+...+.+.++++.+.|++||.++|..+ ++-++.|+
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDr 202 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDR 202 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhhe
Confidence 99999999999999888999999999865 66667887
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=336.59 Aligned_cols=200 Identities=26% Similarity=0.394 Sum_probs=176.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++..+ +...+|+|+|++|++||.++++|||||||||||++|+|...+ .+|+|.+||+++
T Consensus 5 ~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 57788876554 356799999999999999999999999999999999998765 489999999998
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000872 755 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 755 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 833 (1245)
+. ...+|.+|+|+|+-.+||.|||.||+.|+.+++ ....+++.+++|+++++.++|.+.++..+ ..||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHH
Confidence 65 456788999999999999999999999987644 34456678889999999999999888764 47999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 834 qr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||+|||||+.+|++|+||||-|+||..-+..++.-|+++.++ |.|.|.+|||.. |-+.+=|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDr 206 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDR 206 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccc
Confidence 9999999999999999999999999999999999999998654 999999999986 55667777
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=336.25 Aligned_cols=199 Identities=27% Similarity=0.401 Sum_probs=171.6
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++..+. .+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEec
Confidence 578888887652 24699999999999999999999999999999999998664 489999999986
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000872 755 NQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 832 (1245)
Q Consensus 755 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGe 832 (1245)
.. ...++.+||++|+..+++.+||+|++.|.+.++. ....+..++++++++.++|.+..++.+ +.|||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHH
Confidence 43 2356789999999999999999999998776542 233444566889999999998877765 4699999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 833 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 833 rqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||++||+||+++|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+..|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~ 207 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDR 207 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999877999999999986 56666776
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=319.13 Aligned_cols=200 Identities=23% Similarity=0.315 Sum_probs=165.7
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+.. ..+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehh
Confidence 567888876631 113599999999999999999999999999999999998654 4899999998763
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000872 756 QE------TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 829 (1245)
Q Consensus 756 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 829 (1245)
.. .+++.++|++|++.+++.+||.|++.+....+. ...++.+++++++++.+|+.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 245679999999988899999999988754331 223345567899999999987766554 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~ 207 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHR 207 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998777899999999985 44445565
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=329.57 Aligned_cols=195 Identities=18% Similarity=0.180 Sum_probs=141.2
Q ss_pred eEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCee
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 753 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~ 753 (1245)
..+.+.++++.++. +..+++.+++..++.-...+++|+||+||||+++++.|...+ ..|.+.+++
T Consensus 361 p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~~-- 425 (582)
T KOG0062|consen 361 PNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRHP-- 425 (582)
T ss_pred CeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeecc--
Confidence 35778888766532 112688999999999999999999999999999999986543 367776665
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000872 754 KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 754 ~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 833 (1245)
+..++|..|...-+..+.|.+-- +....+- +.+ ++..++-+..+||..-. .-. ...+||||||
T Consensus 426 ------r~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~p--G~~----~ee~r~hl~~~Gl~g~l---a~~-si~~LSGGQK 488 (582)
T KOG0062|consen 426 ------RLRIKYFAQHHVDFLDKNVNAVD-FMEKSFP--GKT----EEEIRRHLGSFGLSGEL---ALQ-SIASLSGGQK 488 (582)
T ss_pred ------cceecchhHhhhhHHHHHhHHHH-HHHHhCC--CCC----HHHHHHHHHhcCCCchh---hhc-cccccCCcch
Confidence 45688999987665555554433 3333331 222 23356667788887421 111 2567999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhcCCCCccCCCC
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDG 908 (1245)
Q Consensus 834 qr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~~~~~~~~~~~~ 908 (1245)
-||++|.....+|.+|+|||||++||..+-..+.+.|+.. +..||+++|+-+ ..+..++....|.++
T Consensus 489 srvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-----fi~~~c~E~Wvve~g 555 (582)
T KOG0062|consen 489 SRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-----FISSLCKELWVVEDG 555 (582)
T ss_pred hHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-----HHhhcCceeEEEcCC
Confidence 9999999999999999999999999999999999999875 467999999753 334444444334333
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=333.39 Aligned_cols=202 Identities=22% Similarity=0.298 Sum_probs=170.5
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|++..+... ...+.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.+||.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 5688888776311 1124699999999999999999999999999999999998664 4899999999864
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000872 756 QE------TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 829 (1245)
Q Consensus 756 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 829 (1245)
.. ..++.+||++|+..+++..||+||+.|....+ ..++++.++++.++++.+||.+..|..+ +.||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23567999999999999999999998875543 2345566677899999999998877654 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||||+|||||+++|++|+||||||+||+.++..+++.|+++.++ |.|||+++|++. .+.+..|+
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~ 210 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDC 210 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999765 899999999975 55566777
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=342.63 Aligned_cols=191 Identities=25% Similarity=0.390 Sum_probs=164.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ ++.+|||+|++.++|.+||+||+.|+.+..+.
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~-- 106 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGM-- 106 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCC--
Confidence 47999999999999999999999987 9999999998865433 46799999999999999999999997653211
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
... +.+..++++++.+||++..+..+. .|||||||||+|||||
T Consensus 107 --------~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~QRvalARAL 149 (356)
T PRK11650 107 --------PKA------------------------EIEERVAEAARILELEPLLDRKPR-----ELSGGQRQRVAMGRAI 149 (356)
T ss_pred --------CHH------------------------HHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHHHHHHHHH
Confidence 000 112345778999999887776554 5999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
+.+|++||||||||+||+.++..+.+.|+++.+. .+++++++||+..++..++|+|++|++|+++..|+++++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR-LKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 9999999999999999999999999999998753 3667888999999999999999999999999999998873
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=321.24 Aligned_cols=198 Identities=26% Similarity=0.364 Sum_probs=164.8
Q ss_pred EEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc
Q 000872 677 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 756 (1245)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~ 756 (1245)
+++|+++.+. .+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 4667776652 23599999999999999999999999999999999998654 48999999987643
Q ss_pred ------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 757 ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 757 ------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
..+++.++|++|++.+++.+||.|++.+...... ....++.+++++++++.+|+.+..+..+ +.|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 2345679999999999999999999988643221 2234444567889999999987766554 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+..|+
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~ 206 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADR 206 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999999998764 899999999986 45566676
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=336.05 Aligned_cols=200 Identities=27% Similarity=0.374 Sum_probs=172.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++..+. +.+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.+||.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 367888877652 124699999999999999999999999999999999998664 489999999987
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000872 755 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 755 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 833 (1245)
.. ...++.+|||+|+..++|.+||+||+.|....+ ..+..+.+++++++++.+||.+..+..+ +.||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 43 234578999999999999999999999986543 2345566678999999999998877664 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 834 qr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++.++.|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~ 204 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADR 204 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 899999999985 67777887
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=339.53 Aligned_cols=191 Identities=25% Similarity=0.388 Sum_probs=164.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|++.++|.+||+||+.|+.+.++..
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~- 109 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVP- 109 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCC-
Confidence 47999999999999999999999988 9999999998865444 478999999999999999999999986533210
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
+. +.++.++++++.+||.+..+..+ +.|||||||||+|||||
T Consensus 110 ---------~~------------------------~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 110 ---------KE------------------------ERKQRVKEALELVDLAGFEDRYV-----DQISGGQQQRVALARAL 151 (351)
T ss_pred ---------HH------------------------HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHH
Confidence 00 11234677899999987776554 46999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
+.+|++|||||||++||+.++.++.+.|+++.+. .+++++++||+.+++..++|+|++|++|+++..|+++++.
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ-FNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999998753 3567788999999999999999999999999999998873
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=333.28 Aligned_cols=199 Identities=25% Similarity=0.373 Sum_probs=173.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++..+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.+||.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 578889887652 24589999999999999999999999999999999998764 489999999987
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000872 755 NQE-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 755 ~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 833 (1245)
... ..++.+|||+|+..++|.+||+||+.|....+ ..++.+.+++++++++.+||.+..+..+ +.||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 542 33577999999999999999999999986544 2345666778999999999998877653 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 834 qr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|+++|++. ++.++.|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~ 206 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDT 206 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 899999999986 66777787
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=336.51 Aligned_cols=190 Identities=25% Similarity=0.382 Sum_probs=162.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+||||||||||+++|+|+.+|+ +|+|.++|.++.... .++.++|++|+..+++..||+||+.+....
T Consensus 33 i~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~ 109 (343)
T TIGR02314 33 IYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (343)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH
Confidence 47999999999999999999999988 999999999886542 245799999999999999999999986543
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.+.. +. +.+..+.++++.+||.+..|..++ .|||||||||+
T Consensus 110 ~~~~----------~~------------------------~~~~~v~e~l~~vgL~~~~~~~~~-----~LSgGqkQRV~ 150 (343)
T TIGR02314 110 DNTP----------KD------------------------EIKRKVTELLALVGLGDKHDSYPS-----NLSGGQKQRVA 150 (343)
T ss_pred cCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHH
Confidence 2110 00 012235678999999988776554 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
|||||+.+|++|+||||||+||+.++..+++.|+++++.. +.+|++++|+.+.+.++||+|++|++|++++.|+++++
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~-g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999987643 56788899999999999999999999999999998876
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=334.29 Aligned_cols=199 Identities=26% Similarity=0.379 Sum_probs=173.1
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++..+. .+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.+||.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 477888887652 24589999999999999999999999999999999998654 489999999886
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000872 755 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 755 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 833 (1245)
.. ...+|.+|||+|+..++|.+||+||+.|....+ ..+..+.+++++++++.+||.+..+..+ +.||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 43 234577999999999999999999999986543 2345566778999999999998887653 47999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 834 qr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||+|||+|+.+|++|+|||||++||..++..+.+.|+++.++ |.|+|+++|++. ++..+.|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~ 204 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADR 204 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 899999999996 67788887
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=339.80 Aligned_cols=192 Identities=21% Similarity=0.368 Sum_probs=164.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCcee--eEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKAS--GKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~--G~I~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+++|+|||||||||||++|+|..+|+ + |+|.++|+++..... ++.++||+|++.+++.+||+||+.|+.+.++.
T Consensus 33 ~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~ 109 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM 109 (362)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999987 8 999999998765433 46799999999999999999999998653211
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
. .. +.+..++++++.+||++..+..++ +|||||||||+|||
T Consensus 110 ~----------~~------------------------~~~~~v~~~l~~~gL~~~~~~~~~-----~LSgGq~QRvaLAR 150 (362)
T TIGR03258 110 P----------KA------------------------DIAERVADALKLVGLGDAAAHLPA-----QLSGGMQQRIAIAR 150 (362)
T ss_pred C----------HH------------------------HHHHHHHHHHHhcCCCchhhCChh-----hCCHHHHHHHHHHH
Confidence 0 00 112346778999999988876655 59999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
||+.+|++|||||||++||+.++.++.+.|+++.+..++++++++||+.+++..++|+|++|++|+++..|+++++.
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999876432677888999999999999999999999999999998873
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=339.63 Aligned_cols=191 Identities=26% Similarity=0.414 Sum_probs=164.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ ++.++||+|++.++|.+||+||+.|+.+.++.
T Consensus 32 ~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~-- 106 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGM-- 106 (353)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCC--
Confidence 47999999999999999999999988 9999999998865433 46799999999999999999999998653211
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
.+. +.+..++++++.+||++..+..+. .|||||||||+|||||
T Consensus 107 --------~~~------------------------~~~~~~~~~l~~l~L~~~~~~~~~-----~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 107 --------GRA------------------------EVAERVAELLDLVGLPGSERKYPG-----QLSGGQQQRVALARAL 149 (353)
T ss_pred --------CHH------------------------HHHHHHHHHHHHcCCCchhhCChh-----hCCHHHHHHHHHHHHH
Confidence 000 112346779999999988776554 5999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
+.+|+++|||||||+||+.++.++.+.|+++.+. .+.+++++||+.+++..++|+|++|++|+++..|+++++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR-LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999998654 3567788999999999999999999999999999998874
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=347.86 Aligned_cols=194 Identities=27% Similarity=0.424 Sum_probs=162.9
Q ss_pred CeEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCe
Q 000872 673 PFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY 752 (1245)
Q Consensus 673 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~ 752 (1245)
...++|+|+++.|+.. ++.++|||+||+|+|||.+|++||||+||||+.++|.+..++ .+|+|.+||+
T Consensus 463 ~G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P--tsG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP--TSGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEEECCe
Confidence 3479999999999753 345799999999999999999999999999999999987554 5899999999
Q ss_pred eCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHcCCcccccccccCCC
Q 000872 753 PKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRE-----MFVEEVMELVELNPLRQALVGLPG 824 (1245)
Q Consensus 753 ~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~-----~~v~~~l~~l~l~~~~~~~~g~~~ 824 (1245)
|+.+ ..+++.+|+|.|++.++. -||+||+.|+.. ..+.++.. +-+.+-+ .++.+-.||.+|..+
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGEKG 602 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHH--HhCccccccccCCcc
Confidence 9754 567889999999999986 499999998753 23333322 1222332 355667899999776
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
. .||||||||++|||||++||+||+|||+||.||++++..|+++|.+..+ ++|||+++|+.|
T Consensus 603 ~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS 664 (716)
T KOG0058|consen 603 S-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS 664 (716)
T ss_pred c-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh
Confidence 5 5999999999999999999999999999999999999999999988875 699999999886
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=304.00 Aligned_cols=190 Identities=27% Similarity=0.329 Sum_probs=161.5
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc----ccceEEEecccc--ccCCCCCHHHHHHHHHhcc
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV----PQRTAAYISQHD--IHIGEMTVRETLAFSARCQ 75 (1245)
Q Consensus 2 ~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~~--~~~~~~Tv~e~l~f~~~~~ 75 (1245)
.+|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+-+|+||| .+-|..||++.|.-+...+
T Consensus 36 lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~ 112 (252)
T COG1124 36 LGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH 112 (252)
T ss_pred EEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC
Confidence 6899999999999999999999988 999999998775543 356789999997 5778899999998765443
Q ss_pred CCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHH
Q 000872 76 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTT 155 (1245)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~i 155 (1245)
+..+ .++++.++++.+||+...- ++.+..||||||||++|
T Consensus 113 ~~~~------------------------------------~~~~i~~~L~~VgL~~~~l----~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 113 GLSK------------------------------------SQQRIAELLDQVGLPPSFL----DRRPHELSGGQRQRIAI 152 (252)
T ss_pred CccH------------------------------------HHHHHHHHHHHcCCCHHHH----hcCchhcChhHHHHHHH
Confidence 2110 1122567899999987433 35556799999999999
Q ss_pred HHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 156 GEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 156 a~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
||||..+|++||||||||+||+....+|++.|.++.+. .+.+.++|+|+...+..+||||+||++|++++.++.+++..
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~-~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE-RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh-cCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999999999999999999999764 56788889999999999999999999999999999988753
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=337.07 Aligned_cols=191 Identities=20% Similarity=0.324 Sum_probs=163.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-------QRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|||||||||||++|+|+.+|+ +|+|.++|.++..... ++.++||+|++.+++.+||+||+.|+.+
T Consensus 21 i~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~ 97 (363)
T TIGR01186 21 IFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPE 97 (363)
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999987 9999999998865433 4679999999999999999999999765
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
..+.. +. +..+.+.++++.+||++..+..++ .|||||||||
T Consensus 98 ~~~~~----------~~------------------------~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV 138 (363)
T TIGR01186 98 LLGWP----------EQ------------------------ERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRV 138 (363)
T ss_pred HcCCC----------HH------------------------HHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHH
Confidence 43210 00 012245678899999877776555 5999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|+++||||||+|||+.++.++.+.|+++.+. .++||++++|+.+++..+||+|++|++|+++..|+++++
T Consensus 139 ~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~-~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 139 GLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT-LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999999999999999999999999999988653 356788899999999999999999999999999998887
Q ss_pred H
Q 000872 234 E 234 (1245)
Q Consensus 234 ~ 234 (1245)
.
T Consensus 218 ~ 218 (363)
T TIGR01186 218 L 218 (363)
T ss_pred H
Confidence 4
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=333.17 Aligned_cols=199 Identities=24% Similarity=0.344 Sum_probs=172.1
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeE--EEEEECCe
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT--GNITISGY 752 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~--G~i~~~g~ 752 (1245)
.++++|+++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++. + |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA--GLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCCEEEEECCE
Confidence 477888887653 235999999999999999999999999999999999986643 6 99999998
Q ss_pred eCCc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000872 753 PKNQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 831 (1245)
Q Consensus 753 ~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 831 (1245)
+... ...++.+|||+|+..++|.+||+||+.|....+ ..+..+.+++++++++.+||.+..+..+ +.||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 8643 234577999999999999999999999986543 2345566678999999999998887764 479999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCHHHHHHhhh
Q 000872 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 832 erqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++..+.|+
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dr 208 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADK 208 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998776 799999999986 56777787
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=313.67 Aligned_cols=186 Identities=30% Similarity=0.405 Sum_probs=156.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHH
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-ETFTRISGYCEQNDIHSPYVTVY 779 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~ 779 (1245)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|+..+++.+|++
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 4699999999999999999999999999999999998654 48999999987643 22346789999998888899999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCC
Q 000872 780 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859 (1245)
Q Consensus 780 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD 859 (1245)
|++.+..... .......++.++++++.+|+.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||
T Consensus 91 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD 162 (213)
T cd03259 91 ENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALD 162 (213)
T ss_pred HHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9998765432 1223344556889999999987766654 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 860 ARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 860 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 200 (213)
T cd03259 163 AKLREELREELKELQRELGITTIYVTHDQE-EALALADR 200 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCE
Confidence 99999999999998764 899999999985 44455665
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=333.09 Aligned_cols=191 Identities=26% Similarity=0.391 Sum_probs=164.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+|||+|++.+++.+||+||+.|.+...+..
T Consensus 35 i~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS 111 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999988 999999999875432 2467999999999999999999999866543210
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
. .+....++++++.+||.+..++.++ +||||||||++||+|
T Consensus 112 ----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~a 152 (306)
T PRK13537 112 ----------A------------------------AAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARA 152 (306)
T ss_pred ----------H------------------------HHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHHHH
Confidence 0 0011235678889999988887776 599999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
|+.+|++++|||||+|||+.++..+++.|+++++ .+++|++++|+.+++..+||+|++|++|++++.|+++++.+
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999864 36788889999999999999999999999999999988754
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=314.63 Aligned_cols=200 Identities=30% Similarity=0.413 Sum_probs=163.5
Q ss_pred EEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc
Q 000872 677 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 756 (1245)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~ 756 (1245)
+++|+++.+... ...+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~ 70 (218)
T cd03255 2 ELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDISK 70 (218)
T ss_pred eEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehhh
Confidence 467777665310 0114699999999999999999999999999999999998654 48999999987643
Q ss_pred cc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000872 757 ET-------FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 829 (1245)
Q Consensus 757 ~~-------~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 829 (1245)
.. .++.++|++|++.+++.+||+|++.+....+. ....+.++.++++++.+|+.+..+..+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SELS 142 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcC
Confidence 11 24579999999999999999999998765432 223344567889999999987766553 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhh
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++.. + +..|+
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~ 209 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADR 209 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcE
Confidence 9999999999999999999999999999999999999999999976 58999999999864 3 35665
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=312.08 Aligned_cols=185 Identities=24% Similarity=0.398 Sum_probs=157.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 780 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 780 (1245)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+||.+... ..++.++|++|+..+++.+|++|
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHH
Confidence 3599999999999999999999999999999999998654 48999999987643 34567899999998888999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCH
Q 000872 781 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860 (1245)
Q Consensus 781 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~ 860 (1245)
++.+....+. ....+.++.++++++.+|+.+..+..+ +.||||||||++||++|+.+|++++|||||+|||+
T Consensus 90 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~ 161 (210)
T cd03269 90 QLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP 161 (210)
T ss_pred HHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 9988655432 233444567889999999987766543 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 861 RAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 861 ~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.++..+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 162 ~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~ 197 (210)
T cd03269 162 VNVELLKDVIRELARAGKTVILSTHQME-LVEELCDR 197 (210)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhE
Confidence 9999999999998777899999999986 34455565
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=330.59 Aligned_cols=187 Identities=28% Similarity=0.384 Sum_probs=161.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCC
Q 000872 700 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ--ETFTRISGYCEQNDIHSPYVT 777 (1245)
Q Consensus 700 ~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lt 777 (1245)
++.+|+|+|++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 35699999999999999999999999999999999998654 48999999987643 234567999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCC
Q 000872 778 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 857 (1245)
Q Consensus 778 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsg 857 (1245)
|+|++.+.+.++. ....+.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998766542 233444567899999999998777664 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 858 LDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 858 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||+.++..+++.|++++++|+|||+++|++. ++.+..|+
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~ 193 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDR 193 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 9999999999999999877999999999986 55666776
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=329.01 Aligned_cols=199 Identities=26% Similarity=0.385 Sum_probs=170.7
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++..+. ++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEEC
Confidence 588899887652 34699999999999999999999999999999999998764 489999999986
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000872 755 NQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 832 (1245)
Q Consensus 755 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGe 832 (1245)
.. ...++.+||++|+..+++.+||.|++.+.+.+.. ....+..++++++++.++|.+..++.++ .|||||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVS-----DLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHH
Confidence 43 2356779999999999999999999987665442 2333445567889999999988777654 699999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 833 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 833 rqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||++||++|+++|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++-+..|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~ 241 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDR 241 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999877999999999986 66667777
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=314.58 Aligned_cols=190 Identities=26% Similarity=0.398 Sum_probs=164.1
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCC----CCcccceEEEecccc-ccCCCCCHHHHHHHHHhccC
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMH----EFVPQRTAAYISQHD-IHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 2 ~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~----~~~~~~~~~yv~Q~~-~~~~~~Tv~e~l~f~~~~~~ 76 (1245)
++|+||||||||||+++|+|.++|. +|.|.++|.+.. ....++.+|||+|+| ..+..-||.|.+.|+....+
T Consensus 33 ~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g 109 (235)
T COG1122 33 VLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG 109 (235)
T ss_pred EEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC
Confidence 7899999999999999999999988 899999998865 223467899999996 35667799999999887654
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
... ++.+.+++++++.+||.+.++..+ ..|||||||||+||
T Consensus 110 ~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~r~p-----~~LSGGqkqRvaIA 150 (235)
T COG1122 110 LPR----------------------------------EEIEERVAEALELVGLEELLDRPP-----FNLSGGQKQRVAIA 150 (235)
T ss_pred CCH----------------------------------HHHHHHHHHHHHHcCchhhccCCc-----cccCCcceeeHHhh
Confidence 211 113456788999999998877544 46999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
.+|+.+|++|+|||||||||+..+.++++.++++... ++.|+|+++|+.+.+..++|++++|++|+++++|++.++.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~ 227 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF 227 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHh
Confidence 9999999999999999999999999999999999763 5678888999999999999999999999999999987664
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=314.00 Aligned_cols=208 Identities=36% Similarity=0.582 Sum_probs=170.3
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-CeeEEEEEECCeeC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR-GYITGNITISGYPK 754 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~-~~~~G~i~~~g~~~ 754 (1245)
+.|+|+++.+... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+. .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 4577777766321 0135699999999999999999999999999999999997651 13589999999887
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHHcCCcccccccccCCCCCcCCHHHH
Q 000872 755 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEE-VMELVELNPLRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 755 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~-~l~~l~l~~~~~~~~g~~~~~~lSgGer 833 (1245)
....+++.++|++|++.+++.+||+|++.+......+.........+.+++ .++.+++.+..++. .+.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 654567789999999999999999999998765443222222233334555 88889988766554 347999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 834 qr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++..++.+.+|+
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~ 213 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDR 213 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCE
Confidence 9999999999999999999999999999999999999998777899999999998788888887
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=312.65 Aligned_cols=184 Identities=28% Similarity=0.418 Sum_probs=156.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 780 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 780 (1245)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... .++.++|++|+..+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 4699999999999999999999999999999999998654 48999999987642 3567899999998888899999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCH
Q 000872 781 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860 (1245)
Q Consensus 781 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~ 860 (1245)
++.+....+. ...+...+.++++++.+|+.+..+..+ +.||||||||++||++|+.+|++++|||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9988754431 233444567889999999987666553 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhh
Q 000872 861 RAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 861 ~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.++..+.+.|+++.+ .|+|||+++|++. ++.+..|+
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 201 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADR 201 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999864 4899999999986 44455665
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=338.72 Aligned_cols=190 Identities=27% Similarity=0.392 Sum_probs=163.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ ++.++||+|++.++|.+||+||+.|+.+.++..
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~- 117 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP- 117 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCC-
Confidence 47999999999999999999999987 9999999998865433 467999999999999999999999976432110
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
.. +.++.++++++.+||++..+..+. .|||||||||+|||||
T Consensus 118 ---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~p~-----~LSgGq~QRVaLARaL 159 (375)
T PRK09452 118 ---------AA------------------------EITPRVMEALRMVQLEEFAQRKPH-----QLSGGQQQRVAIARAV 159 (375)
T ss_pred ---------HH------------------------HHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHH
Confidence 00 012245678899999887776554 5999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+.+|++|||||||++||+.++..+.+.|+++.+. .+++++++||+..++..++|+|++|++|+++..|+++++
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i 232 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRK-LGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999998764 366778899999999999999999999999999998887
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=287.44 Aligned_cols=185 Identities=25% Similarity=0.403 Sum_probs=162.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
++-|+||||||||||||+|.+...|+ +|+|.++|+++.... .+++||+|+||.-+++..||.||+.|..+.
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v 106 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV 106 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc
Confidence 46799999999999999999999988 999999999986543 258899999999999999999999998876
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.+... .++++++.++|+..||.+.++...- .|||||||||+
T Consensus 107 ~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~~lP~-----~LSGGEQQRva 147 (223)
T COG2884 107 IGKPP----------------------------------REIRRRVSEVLDLVGLKHKARALPS-----QLSGGEQQRVA 147 (223)
T ss_pred cCCCH----------------------------------HHHHHHHHHHHHHhccchhhhcCcc-----ccCchHHHHHH
Confidence 54211 1234567889999999998886554 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecC
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 229 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~ 229 (1245)
||||++.+|++|+-||||..|||..+.+|++.+.++.+ .||||++.||+..-+..+-.+++.|++|+++....
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999999976 48899999999998889999999999999986543
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=311.18 Aligned_cols=161 Identities=24% Similarity=0.312 Sum_probs=127.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHH
Q 000872 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESL 782 (1245)
Q Consensus 703 ~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l 782 (1245)
-|+-=.+.|..||+++++||||-||||+.++|+|-.++. +|. .. .-.++|=||--.--...||++-|
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l 422 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLL 422 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHH
Confidence 344456788999999999999999999999999976643 454 11 12468888876555678999987
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHH
Q 000872 783 LYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 862 (1245)
Q Consensus 783 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~ 862 (1245)
.-...-+... .-...++.+-|.|.+..+..+ .+|||||.|||+||.+|.+++++.+||||++.||++.
T Consensus 423 ~~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEq 490 (591)
T COG1245 423 RSAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQ 490 (591)
T ss_pred HHhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHH
Confidence 5433222111 123467888889988887664 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecCCC
Q 000872 863 AAVVMRTVRNTVD-TGRTVVCTIHQPS 888 (1245)
Q Consensus 863 ~~~i~~~l~~~~~-~g~tvi~~~H~p~ 888 (1245)
+..+-+.||+... .++|.+++-|+--
T Consensus 491 R~~vakvIRR~~e~~~kta~vVdHDi~ 517 (591)
T COG1245 491 RIIVAKVIRRFIENNEKTALVVDHDIY 517 (591)
T ss_pred HHHHHHHHHHHHhhcCceEEEEeccee
Confidence 9999999999874 4789999999854
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=330.20 Aligned_cols=202 Identities=27% Similarity=0.397 Sum_probs=170.9
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.+||.+.
T Consensus 2 ~L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 66 (353)
T PRK10851 2 SIEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDV 66 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 367788877652 24699999999999999999999999999999999998654 489999999986
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000872 755 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 832 (1245)
Q Consensus 755 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGe 832 (1245)
.. ...++.++|++|+..++|.+||.||+.|....+.. ...+.++.+++++++++.++|.+..+..+ ..|||||
T Consensus 67 ~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq 141 (353)
T PRK10851 67 SRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQ 141 (353)
T ss_pred CCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 43 23356799999999999999999999987654211 12344556678899999999988777654 4699999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 833 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 833 rqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|+++|++. ++....|+
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dr 206 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADR 206 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998765 899999999985 56677787
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=310.70 Aligned_cols=199 Identities=26% Similarity=0.343 Sum_probs=164.6
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 45777776652 123599999999999999999999999999999999998654 4899999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000872 756 QE------TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 829 (1245)
Q Consensus 756 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 829 (1245)
.. .+++.++|++|+..+++.+|+.|++.+....+. ......++.++++++.+|+.+..+..+ +.||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 31 245678999999988889999999988754331 223344567889999999987655543 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~ 206 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHR 206 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999999999998777999999999985 44455565
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=330.78 Aligned_cols=199 Identities=23% Similarity=0.334 Sum_probs=172.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478889887653 23599999999999999999999999999999999998764 489999999986
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000872 755 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 755 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 833 (1245)
.. ...++.+||++|+..++|.+||.||+.|+...+ ..+..+.+++++++++.+||.+..+..+ ..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 234577999999999999999999999876533 2344555667899999999998877664 47999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 834 qr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||+|||+|+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++||++. ++..+.|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDr 214 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDR 214 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 899999999986 66777887
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=311.11 Aligned_cols=186 Identities=26% Similarity=0.362 Sum_probs=157.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcc------cccceEEEEccCCCCCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE------TFTRISGYCEQNDIHSP 774 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~ 774 (1245)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... .+++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 3699999999999999999999999999999999998654 489999999876421 24567999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCC
Q 000872 775 YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 854 (1245)
Q Consensus 775 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEp 854 (1245)
.+|++|++.+....+. ...++.++.++++++.+|+.+..+..+ +.||||||||++||++|+.+|++++||||
T Consensus 92 ~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999988754432 233444567889999999987766553 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 855 TSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 855 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|+|||+.++..+.+.|+++.++|+|||+++|++. .+.+..|+
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~ 205 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHR 205 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999998777999999999985 33444565
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=325.47 Aligned_cols=199 Identities=27% Similarity=0.380 Sum_probs=167.8
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. ++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 477888887652 23599999999999999999999999999999999998654 489999999876
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000872 755 NQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 832 (1245)
Q Consensus 755 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGe 832 (1245)
.. ...++.+||++|+..+++.+||+|++.+.+... .....+..++++++++.+++.+..++.+ +.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 42 234567999999998889999999998755433 1233344456788999999988777664 4699999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 833 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 833 rqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~ 204 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDR 204 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999877999999999986 55566776
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=311.68 Aligned_cols=197 Identities=28% Similarity=0.367 Sum_probs=164.1
Q ss_pred EEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc
Q 000872 677 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 756 (1245)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~ 756 (1245)
+++|+++.+. .+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecCc
Confidence 4667776552 24699999999999999999999999999999999998654 48999999987532
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000872 757 --ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834 (1245)
Q Consensus 757 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerq 834 (1245)
...++.++|++|+..+++.+||+|++.+....+. ...++.+++++++++.+|+.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHH
Confidence 2345678999999988899999999988755431 233344566899999999987766654 469999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 835 r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~ 201 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDR 201 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999998776 899999999986 44455565
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=309.81 Aligned_cols=197 Identities=26% Similarity=0.388 Sum_probs=163.2
Q ss_pred EEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc
Q 000872 677 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 756 (1245)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~ 756 (1245)
+++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCc
Confidence 4667776552 23599999999999999999999999999999999998654 48999999987643
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000872 757 E-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 835 (1245)
Q Consensus 757 ~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr 835 (1245)
. ..++.++|++|+..+++..|++|++.+....+ ....++.+++++++++.+|+.+..+..+ +.||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHH
Confidence 1 23457999999998888899999998865433 1233444567889999999987766654 4699999999
Q ss_pred HHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 836 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 836 ~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~ 200 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADR 200 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCe
Confidence 99999999999999999999999999999999999998764 899999999985 44455565
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=293.35 Aligned_cols=192 Identities=22% Similarity=0.381 Sum_probs=166.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++++|||||||||.+.++.|+.+|+ +|+|.++|.+++.... +.-+||+||++..|-.+||+|||....+.+.
T Consensus 32 iVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~ 108 (243)
T COG1137 32 IVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIRE 108 (243)
T ss_pred EEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhh
Confidence 57999999999999999999999998 9999999999987654 2458999999999999999999997665432
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
... .. .+.+.+.+.++++++|.+.++.+-. +||||||+|+.||
T Consensus 109 ~d~--------~~------------------------~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~EIA 151 (243)
T COG1137 109 KDL--------KK------------------------AERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRVEIA 151 (243)
T ss_pred cch--------hH------------------------HHHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHHHHH
Confidence 100 00 0112346789999999999987654 4999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
|||+.+|+.++||||++|+||.+..+|.+.++.++. ++.-|+++-|+..|.++.|||.+++++|++..+|+++++.
T Consensus 152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred HHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHh
Confidence 999999999999999999999999999999999976 4777888999999999999999999999999999999874
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=303.09 Aligned_cols=204 Identities=26% Similarity=0.387 Sum_probs=172.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCccc----ceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ----RTAAYISQHDIHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...++ .-++--+|...+|++|||.||+..+...+.
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~ 108 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARL 108 (250)
T ss_pred EEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhh
Confidence 58999999999999999999999998 99999999999877653 447788999999999999999998865432
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
. +.......+ ...+..+..+.+..+|+.+||.+.+|+..|+ ||+|||||+.||
T Consensus 109 ~---~~~~l~~~~-------------------~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEIA 161 (250)
T COG0411 109 G---LSGLLGRPR-------------------ARKEEREARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIA 161 (250)
T ss_pred h---hhhhhcccc-------------------chhhHHHHHHHHHHHHHHcCCchhhcchhhc-----CChhHhHHHHHH
Confidence 1 000000000 0001122345578899999999999998886 999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
|||+.+|++|+||||.+||.+....++.+.++++++ ..+.++++|.|+++.++.+||||+||+.|+++.+|+++++.+
T Consensus 162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 999999999999999999999999999999999976 356889999999999999999999999999999999998853
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=311.61 Aligned_cols=202 Identities=27% Similarity=0.395 Sum_probs=166.8
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+... .....+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcc
Confidence 4577887765311 0112699999999999999999999999999999999998654 4899999998764
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000872 756 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 756 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 833 (1245)
. ..+++.++|++|++.+++.+||+|++.+....+ .....+..+.++++++.+|+.+..+..+ +.||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 234567999999998889899999998765443 2234455567899999999987766553 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 834 qr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~ 205 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDR 205 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999998777999999999985 45556665
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=329.39 Aligned_cols=199 Identities=24% Similarity=0.349 Sum_probs=171.6
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++..+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.+||.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488888887652 23589999999999999999999999999999999998764 489999999886
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000872 755 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 755 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 833 (1245)
.. ...++.+||++|+..++|.+||.||+.|....+ ..+..+.+++++++++.++|.+..+..+ ..||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 235678999999999999999999999876543 2345566678999999999998777654 47999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhh
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 834 qr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||+|||+|+.+|++|+|||||++||..++..+.+.|+++.+ .|.|+|++||++. +++.+-|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDr 219 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGR 219 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999998865 4899999999986 66777787
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=309.51 Aligned_cols=192 Identities=25% Similarity=0.366 Sum_probs=170.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-------QRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
|..|||-||||||||+++|.++.+|+ +|+|+++|.++...+. ++.+++|+|+..++|..||.||..|+.+
T Consensus 56 IfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe 132 (386)
T COG4175 56 IFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 132 (386)
T ss_pred EEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee
Confidence 46899999999999999999999988 9999999999866543 3679999999999999999999999998
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
.++.+.. +.++++.+.++..||+...+.++. +||||+||||
T Consensus 133 v~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~yp~-----eLSGGMqQRV 173 (386)
T COG4175 133 VQGVPKA----------------------------------EREERALEALELVGLEGYADKYPN-----ELSGGMQQRV 173 (386)
T ss_pred ecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcCcc-----cccchHHHHH
Confidence 8775321 112345678999999999987665 5999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
.|||||..+|+||++|||+|+|||--+.++.+-|.++.+.. ++||+.|+|+.+|++.+.|||.+|++|+|+..|+++++
T Consensus 174 GLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l-~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eI 252 (386)
T COG4175 174 GLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL-KKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEI 252 (386)
T ss_pred HHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHh-CCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999998887765 56777899999999999999999999999999999998
Q ss_pred HH
Q 000872 234 EQ 235 (1245)
Q Consensus 234 ~~ 235 (1245)
..
T Consensus 253 l~ 254 (386)
T COG4175 253 LL 254 (386)
T ss_pred Hc
Confidence 53
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=329.94 Aligned_cols=191 Identities=29% Similarity=0.429 Sum_probs=162.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+||++|++.+++.+||+||+.+.++..+..
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 97 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP 97 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 999999998875421 2456999999999999999999999865443210
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
.. +....++++++.+||++..++.++ .||||||||++||+|
T Consensus 98 ----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~a 138 (302)
T TIGR01188 98 ----------KD------------------------EAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAAS 138 (302)
T ss_pred ----------HH------------------------HHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHH
Confidence 00 011235678999999988777665 599999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
|+.+|++|||||||+|||+.++..+++.|+++++ .+++|++++|+.+++..+||++++|++|++++.|+++++.+
T Consensus 139 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE--EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999999999999999999865 36778889999999999999999999999999999888754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=282.00 Aligned_cols=181 Identities=27% Similarity=0.341 Sum_probs=154.2
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHHHHHHH
Q 000872 706 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-ETFTRISGYCEQNDIHSPYVTVYESLLY 784 (1245)
Q Consensus 706 ~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~ 784 (1245)
..++.|++||++||+||||||||||||.++|...+ .+|+|+|||.+... ....|-++.++|+..+|..+||++|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 46788999999999999999999999999998765 48999999998754 4566778999999999999999999976
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHH
Q 000872 785 SAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 864 (1245)
Q Consensus 785 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~ 864 (1245)
+..- ....+ ++.++.++.+...+||.++.+.+.+ .||||||||+++||.|+++-+||+||||.|.||+.-+.
T Consensus 95 Gl~P--~LkL~-a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSP--GLKLN-AEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCc--ccccC-HHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 5321 11222 3445678999999999999887754 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhh
Q 000872 865 VVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 865 ~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
++...+.++++ ++.|+++++|+|+ +.-..-|+
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~ 199 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADR 199 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhc
Confidence 99999999875 4899999999997 44445554
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=313.10 Aligned_cols=202 Identities=28% Similarity=0.388 Sum_probs=165.5
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. .+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 467888887653 23599999999999999999999999999999999998654 489999999876
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000872 755 NQE-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS-EVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 832 (1245)
Q Consensus 755 ~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGe 832 (1245)
... ..++.++|++|++.+++.+||+|++.+....+... .....+..+.++++++.+|+.+..+..+ ..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 432 22456899999998888899999998865432110 0122334456789999999987666553 4699999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 833 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 833 rqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~ 206 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADR 206 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998765 899999999985 45566676
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=314.06 Aligned_cols=189 Identities=29% Similarity=0.383 Sum_probs=157.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcc---c-ccceEEEEccCCCCCCCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE---T-FTRISGYCEQNDIHSPYV 776 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~v~q~~~~~~~l 776 (1245)
+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 3599999999999999999999999999999999998654 489999999876432 1 234689999999999999
Q ss_pred CHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCee
Q 000872 777 TVYESLLYSAWLRLSSE-------VNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSII 849 (1245)
Q Consensus 777 tv~e~l~~~~~lr~~~~-------~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il 849 (1245)
||+|++.+....+.... ....+..+.++++++.+|+.+..+..+ +.||||||||++||++|+.+|+++
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~ll 165 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATDPKLL 165 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988654332110 012344556889999999987666543 469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 850 FMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 850 ~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~ 212 (236)
T cd03219 166 LLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADR 212 (236)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999998777899999999986 45566676
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=330.72 Aligned_cols=199 Identities=26% Similarity=0.369 Sum_probs=169.6
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 367888887652 23599999999999999999999999999999999998654 489999999886
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000872 755 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 755 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 833 (1245)
.. ...++.++|++|+..+++.+||+||+.|....+ ....++.+++++++++.+||.+..+..+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 43 223467999999999999999999999876543 2234455667899999999988777654 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 834 qr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~ 203 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADK 203 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998764 899999999986 66677787
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=327.91 Aligned_cols=188 Identities=23% Similarity=0.274 Sum_probs=163.2
Q ss_pred CcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcc---cc----cceEEEEccCCC
Q 000872 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE---TF----TRISGYCEQNDI 771 (1245)
Q Consensus 699 ~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~---~~----~~~~~~v~q~~~ 771 (1245)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.+||.++... .+ ++.++||+|+..
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 445699999999999999999999999999999999998764 489999999987532 22 568999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEE
Q 000872 772 HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 851 (1245)
Q Consensus 772 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~l 851 (1245)
++|.+||+||+.|..... ....++..+++.++++.+||.+..+..+ ..|||||||||+|||||+.+|+||+|
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876543 2345566778999999999988777654 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 852 DEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 852 DEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||++||+.++..+++.++++.++ |+|||+++|++. ++....|+
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~dr 199 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDR 199 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999998654 899999999986 45666777
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=333.44 Aligned_cols=195 Identities=26% Similarity=0.376 Sum_probs=163.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.+||+||+.|+.+....
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~-- 104 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPR-- 104 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccc--
Confidence 47999999999999999999999987 9999999998765433 36799999999999999999999987543100
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
+.. ... .+..+.++++++.+||++..+..+. .|||||||||+|||||
T Consensus 105 -~~~---~~~------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGq~QRvalArAL 151 (353)
T PRK10851 105 -RER---PNA------------------------AAIKAKVTQLLEMVQLAHLADRYPA-----QLSGGQKQRVALARAL 151 (353)
T ss_pred -ccC---CCH------------------------HHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHH
Confidence 000 000 0112345778999999887776554 5999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
+.+|+++||||||+|||+.++..+.+.|+++.+. .+.+++++||+..++..+||+|++|++|++++.|+++++.
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE-LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999998763 3667888999999999999999999999999999998873
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=295.67 Aligned_cols=192 Identities=23% Similarity=0.397 Sum_probs=157.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+|+||+||||||++|+|..++. +|+|.++|++++...+ +.-++||||....|+.+||+|||..++....
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~ 107 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARR 107 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccc
Confidence 58999999999999999999999976 9999999999987655 3569999999999999999999998764321
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
. +.. .....+...+.+| .|.+..+.+-| .|||||||-++||
T Consensus 108 ~-~~~----~~~~~e~v~~lFP-----------------------------~Lker~~~~aG-----~LSGGEQQMLAia 148 (237)
T COG0410 108 D-KEA----QERDLEEVYELFP-----------------------------RLKERRNQRAG-----TLSGGEQQMLAIA 148 (237)
T ss_pred c-ccc----ccccHHHHHHHCh-----------------------------hHHHHhcCccc-----CCChHHHHHHHHH
Confidence 1 000 0000222222222 13333455555 4999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
|||+++|++|+|||||.||-|.-..+|.+.++++++. ++.+|+.+.|+...+.+++||.+||.+|+|++.|+.+++.+
T Consensus 149 RALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 149 RALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred HHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999864 46788999999999999999999999999999999998753
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=294.79 Aligned_cols=202 Identities=26% Similarity=0.314 Sum_probs=162.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++.+|++..+... .....+|+|||++|.+||++||+|+||||||||.++|+|...+ .+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~---------~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGG---------KFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCC---------cchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCccc
Confidence 46778888766432 1122599999999999999999999999999999999998664 489999999775
Q ss_pred Ccc----cccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000872 755 NQE----TFTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 828 (1245)
Q Consensus 755 ~~~----~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 828 (1245)
... .+.+.+-+|+||+. +.|..||++.|.=.... .+.++. ++++.++++.+||.+-.-.+ ....|
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l~R----~P~eL 142 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFLDR----RPHEL 142 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHHhc----Cchhc
Confidence 443 46788999999975 56889999988644332 222333 33389999999997643221 23569
Q ss_pred CHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 829 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 829 SgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||||+||||||+.+|++|+||||||.||+..+..|++.|.++.++ |-|.|+++|+-+ -+..+.|+
T Consensus 143 SGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdR 211 (252)
T COG1124 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDR 211 (252)
T ss_pred ChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhh
Confidence 999999999999999999999999999999999999999999999754 779999999976 45556666
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=312.82 Aligned_cols=186 Identities=28% Similarity=0.387 Sum_probs=157.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcc---c-ccceEEEEccCCCCCCCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE---T-FTRISGYCEQNDIHSPYV 776 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~v~q~~~~~~~l 776 (1245)
+.+|+|+|+.+++||++||+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKL 90 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccCCHhHHHhccEEEecCCccccccC
Confidence 3599999999999999999999999999999999998654 489999999875421 1 235689999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCC
Q 000872 777 TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 856 (1245)
Q Consensus 777 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTs 856 (1245)
|++|++.+....+. ....+..+.++++++.+|+.+..++.+ +.||||||||++||++|+.+|++|+|||||+
T Consensus 91 tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~ 162 (232)
T cd03218 91 TVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFA 162 (232)
T ss_pred cHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 99999987644331 223344556789999999987766553 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 857 GLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 857 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||+.++..+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 163 ~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~ 202 (232)
T cd03218 163 GVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDR 202 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999998777899999999986 55666676
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=334.92 Aligned_cols=191 Identities=24% Similarity=0.354 Sum_probs=163.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ ++.+|||+|++.+++.+||.||+.|+.+.+..
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-- 121 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKL-- 121 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC--
Confidence 47999999999999999999999988 9999999998765433 46799999999999999999999997643211
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
... +.++.++++++.+||.+..+..+. +|||||||||+|||||
T Consensus 122 --------~~~------------------------~~~~~v~~~l~~l~L~~~~~~~~~-----~LSgGq~QRVaLARAL 164 (377)
T PRK11607 122 --------PKA------------------------EIASRVNEMLGLVHMQEFAKRKPH-----QLSGGQRQRVALARSL 164 (377)
T ss_pred --------CHH------------------------HHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHH
Confidence 000 112345678999999877765554 6999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
+.+|++|||||||++||+.++..+.+.|+++.+.. +.+++.+||+.+++..++|++++|++|+++..|+++++.
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999999999999999998886543 567788999999999999999999999999999998873
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=291.86 Aligned_cols=195 Identities=25% Similarity=0.345 Sum_probs=169.8
Q ss_pred cccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCccc----ccceEEEEccCCC
Q 000872 696 VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQET----FTRISGYCEQNDI 771 (1245)
Q Consensus 696 ~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~ 771 (1245)
+++++++++++||+.|++||++|++|||||||||.+.++.|...++ +|+|.+||.+++... .+.-+||.||+..
T Consensus 12 K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d--~G~i~ld~~diT~lPm~~RArlGigYLpQE~S 89 (243)
T COG1137 12 KSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD--SGKILLDDEDITKLPMHKRARLGIGYLPQEAS 89 (243)
T ss_pred HhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC--CceEEECCcccccCChHHHhhcCcccccccch
Confidence 3456778999999999999999999999999999999999987654 899999999886532 2334899999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEE
Q 000872 772 HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 851 (1245)
Q Consensus 772 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~l 851 (1245)
.|-.+||+||++.....+.. +....+++++++++++++++.|+++... ..||||||||+-|||||+.+|+.++|
T Consensus 90 IFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLL 163 (243)
T COG1137 90 IFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILL 163 (243)
T ss_pred HhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEe
Confidence 99999999999877666632 2233566677899999999999998763 35999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhcC
Q 000872 852 DEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAGI 899 (1245)
Q Consensus 852 DEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~~~ 899 (1245)
|||.+|+||-+-..|+++++.++++|.-|++|=|.-+ |..+..|+++
T Consensus 164 DEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaY 210 (243)
T COG1137 164 DEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAY 210 (243)
T ss_pred cCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEE
Confidence 9999999999999999999999999999999999887 6678888853
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=327.74 Aligned_cols=202 Identities=23% Similarity=0.294 Sum_probs=168.6
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++++... ...+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 5678888776310 1124699999999999999999999999999999999998654 4899999998864
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000872 756 QE------TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 829 (1245)
Q Consensus 756 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 829 (1245)
.. .+++.+||++|+..+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..+..+ +.||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23567999999999999999999998876543 2234445567899999999988776653 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+..|+
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~ 210 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDR 210 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998764 899999999986 55566776
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=308.40 Aligned_cols=182 Identities=29% Similarity=0.378 Sum_probs=152.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcccccceEEEEccCCC-CCCCCCHH
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDI-HSPYVTVY 779 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~-~~~~ltv~ 779 (1245)
+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+......++.++|++|+.. .+..+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 4699999999999999999999999999999999998654 48999999988654445567999999964 34467999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCC
Q 000872 780 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859 (1245)
Q Consensus 780 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD 859 (1245)
|++.+..... . ..+++++++++.+|+.+..+..+ +.||||||||++|||+|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754322 1 11245789999999988776654 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 860 ARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 860 ~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~ 195 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDR 195 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999998777999999999986 34445565
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=316.52 Aligned_cols=191 Identities=28% Similarity=0.386 Sum_probs=158.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 104 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE 104 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhh
Confidence 47999999999999999999999987 999999998875432 245699999999999999999999886432
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
... . ... +....++++++.+||.+..++.++ .||||||||++
T Consensus 105 ~~~---~------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~ 146 (235)
T cd03261 105 HTR---L------SEE------------------------EIREIVLEKLEAVGLRGAEDLYPA-----ELSGGMKKRVA 146 (235)
T ss_pred ccC---C------CHH------------------------HHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHH
Confidence 100 0 000 011235668889999877666554 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
|||||+.+|+++||||||+|||+.++..+.+.|+++++. .+++|++++|+.+++..+||++++|++|++++.|+++++
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE-LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999999999998653 356788899999999999999999999999999987765
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=329.03 Aligned_cols=191 Identities=27% Similarity=0.374 Sum_probs=163.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+||++|++.+++.+||+||+.+.....+..
T Consensus 69 i~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 145 (340)
T PRK13536 69 CFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS 145 (340)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999988 999999999875432 3467999999999999999999999755432110
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
.. +....++++++.+||++..++.++ +||||||||++||+|
T Consensus 146 ----------~~------------------------~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~lA~a 186 (340)
T PRK13536 146 ----------TR------------------------EIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTLARA 186 (340)
T ss_pred ----------HH------------------------HHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHHHHH
Confidence 00 011234567888999988887776 499999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
|+++|+++||||||+|||+.++.++++.|++++. .+++|++++|+.+++.++||+|++|++|++++.|+++++.+
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~--~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999865 36788889999999999999999999999999999988754
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=309.04 Aligned_cols=196 Identities=25% Similarity=0.361 Sum_probs=162.1
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++.+... ...+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEc
Confidence 37888998876310 0114699999999999999999999999999999999998653 489999999886
Q ss_pred Cccc------c-cceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000872 755 NQET------F-TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 827 (1245)
Q Consensus 755 ~~~~------~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 827 (1245)
.... . ++.++|++|+..+++.+|++|++.+....+ ....++.+++++++++.+|+.+..+..+ ..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 4311 2 256899999998888999999998865432 1223444567899999999987666543 46
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCH
Q 000872 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSI 889 (1245)
Q Consensus 828 lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~ 889 (1245)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|++..
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 999999999999999999999999999999999999999999999875 58999999999863
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=306.81 Aligned_cols=182 Identities=29% Similarity=0.397 Sum_probs=154.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHH
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-ETFTRISGYCEQNDIHSPYVTVY 779 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~ 779 (1245)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCcccchHHHHhhEEEecCCCccCccCcHH
Confidence 3699999999999999999999999999999999998654 48999999987543 23456789999999888899999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCC
Q 000872 780 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859 (1245)
Q Consensus 780 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD 859 (1245)
|++.+....+. . .+++++++++.+++.+..+..+ +.||||||||++||++|+.+|++++|||||+|||
T Consensus 91 e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 158 (208)
T cd03268 91 ENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158 (208)
T ss_pred HHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCC
Confidence 99987654321 1 1345788999999988766653 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 860 ARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 860 ~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+.++..+.+.|+++.++|+|||+++|++. .+-+..|+
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~ 195 (208)
T cd03268 159 PDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADR 195 (208)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCE
Confidence 99999999999998777899999999986 33344454
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=340.39 Aligned_cols=193 Identities=22% Similarity=0.422 Sum_probs=158.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+||+|||||+||||+.++|...++|+ +|+|++||+|+.+.+. +++||+|.|+|.+|. -||+|||.++... .
T Consensus 496 ~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~~-~- 569 (716)
T KOG0058|consen 496 VVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLDN-A- 569 (716)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCCC-C-
Confidence 48999999999999999999999998 9999999999987764 588999999999775 5999999987541 0
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
+.++..++..+ ....|. ..++++.+||.||+++. .||||||||++|||
T Consensus 570 -----------------------t~e~i~~AAk~-----ANah~F---I~~~p~gY~T~VGEkG~-qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 570 -----------------------TDEEIEAAAKM-----ANAHEF---ITNFPDGYNTVVGEKGS-QLSGGQKQRIAIAR 617 (716)
T ss_pred -----------------------CHHHHHHHHHH-----hChHHH---HHhCccccccccCCccc-cccchHHHHHHHHH
Confidence 01111111111 011222 34689999999999877 59999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
||++||.||||||.||+||+.+...+.+.|.+..+ +.|+++|.|..+.+ +.+|+|+++++|++++.|+++++.+
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~---~rTVlvIAHRLSTV-~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ---GRTVLVIAHRLSTV-RHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc---CCeEEEEehhhhHh-hhccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999999999999987653 46777789988766 5589999999999999999998854
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=321.03 Aligned_cols=197 Identities=24% Similarity=0.366 Sum_probs=168.5
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|++.++. ++.+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 67788877652 24699999999999999999999999999999999998654 4899999998764
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000872 756 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 756 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 833 (1245)
. ...++.+||++|+..+++.+||.|++.+.+.++. .+.++..++++++++.+||.+..+..+ +.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 3 2345679999999999999999999998776542 233444566899999999998877664 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 834 qr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||++||++|+++|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+..|+
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~ 201 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDR 201 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999864 799999999986 56667777
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=334.14 Aligned_cols=191 Identities=25% Similarity=0.420 Sum_probs=162.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.+||+||+.|+....+..
T Consensus 31 ~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~- 106 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK- 106 (369)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCC-
Confidence 47999999999999999999999987 9999999998754332 467999999999999999999999876432110
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
.. +....++++++.+||++..+..++ +|||||||||+|||||
T Consensus 107 ---------~~------------------------~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~QRvaLAraL 148 (369)
T PRK11000 107 ---------KE------------------------EINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTL 148 (369)
T ss_pred ---------HH------------------------HHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHH
Confidence 00 012245678899999887776554 5999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
+.+|++|||||||+|||+.++..+.+.|+++.+. .++++++++|+.+++..+||++++|++|+++..|+++++.
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR-LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-hCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999998653 3567788999999999999999999999999999988773
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=301.44 Aligned_cols=185 Identities=28% Similarity=0.448 Sum_probs=162.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc-------ccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV-------PQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+|||-|+||||||||+|+|+|+.+|+ +|.|.+||+.+.+.. .+|++|||+||.-+||.+||+.||.|+..
T Consensus 26 vTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~ 102 (352)
T COG4148 26 ITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMW 102 (352)
T ss_pred eEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhc
Confidence 58999999999999999999999998 999999998764322 25789999999999999999999999753
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
... ....|++.+.||++|-.+...+ .|||||||||
T Consensus 103 ~~~----------------------------------------~~~fd~iv~lLGI~hLL~R~P~-----~LSGGEkQRV 137 (352)
T COG4148 103 KSM----------------------------------------RAQFDQLVALLGIEHLLDRYPG-----TLSGGEKQRV 137 (352)
T ss_pred ccc----------------------------------------hHhHHHHHHHhCcHHHHhhCCC-----ccCcchhhHH
Confidence 210 1124678899999998886655 5999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|+|||++.|++|+||||.+.||-.-..+++-.|.++.++. ..-|+-++|..+|+..++|+|++|++||+...|+.+++
T Consensus 138 AIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~-~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v 216 (352)
T COG4148 138 AIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEV 216 (352)
T ss_pred HHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhc-CCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHH
Confidence 99999999999999999999999999999999999998764 45567799999999999999999999999999998887
Q ss_pred H
Q 000872 234 E 234 (1245)
Q Consensus 234 ~ 234 (1245)
.
T Consensus 217 ~ 217 (352)
T COG4148 217 W 217 (352)
T ss_pred h
Confidence 4
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=307.11 Aligned_cols=198 Identities=25% Similarity=0.339 Sum_probs=162.9
Q ss_pred EEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc
Q 000872 677 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 756 (1245)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~ 756 (1245)
+++|+++.++ .+.+|+++|++++|||++||+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCc
Confidence 4667776552 23599999999999999999999999999999999998654 48999999987632
Q ss_pred -----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000872 757 -----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 831 (1245)
Q Consensus 757 -----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 831 (1245)
..+++.++|++|+..+++.+|+.|++.+...... ....++.+++++++++.+|+.+..+..+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 2345679999999988889999999987643111 1233344567889999999987666553 469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 832 erqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++-+..|+
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~ 204 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADR 204 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999877899999999985 44455554
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=280.15 Aligned_cols=182 Identities=27% Similarity=0.406 Sum_probs=163.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 780 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 780 (1245)
..+|+|+|+.|.+||.++++||||||||||||+++|..++ ..|+|.+||+++.... ...|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEeccCCC--ccceeEeccCccchhhHHHH
Confidence 3599999999999999999999999999999999998764 4899999999875432 23488999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCH
Q 000872 781 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860 (1245)
Q Consensus 781 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~ 860 (1245)
|+.|+.++| +..+.++.+++.+.+..+||.+..+..+ -.||||||||+.|||||..+|+.|+||||.+.||.
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999999888 5678899999999999999999887664 36999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHH
Q 000872 861 RAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEA 894 (1245)
Q Consensus 861 ~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~ 894 (1245)
-|++.+++.|-++.+ .|+.++++||+-...+|-.
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfla 200 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIEEALFLA 200 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhh
Confidence 999999999988865 5999999999887666643
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=301.09 Aligned_cols=178 Identities=26% Similarity=0.347 Sum_probs=150.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc-----ccccceEEEEccCCC-CCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-----ETFTRISGYCEQNDI-HSP 774 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~~ 774 (1245)
+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|+.. ...
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 4699999999999999999999999999999999998654 48999999987631 134567899999963 233
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCC
Q 000872 775 YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 854 (1245)
Q Consensus 775 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEp 854 (1245)
..|++|++.+....+ ....++..+.++++++.+|+.+..+..+ ..||||||||++|||+|+.+|++++||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 579999998865432 2233444556889999999987766654 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 855 TSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 855 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
|+|||+.+...+.+.|+++.++|+|||+++|++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999998777999999999985
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=305.62 Aligned_cols=200 Identities=25% Similarity=0.343 Sum_probs=171.4
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.+++++|.++. +..+|+|+|+.+++||.++|+|+||||||||+++|+|...+ .+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeec
Confidence 3678888887642 14799999999999999999999999999999999998764 479999999985
Q ss_pred C----cccccceEEEEccCCCCC-CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000872 755 N----QETFTRISGYCEQNDIHS-PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 829 (1245)
Q Consensus 755 ~----~~~~~~~~~~v~q~~~~~-~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 829 (1245)
. ...+++.+|||+|++... ..-||.|.+.|+..-. ..+.++.+++++++++.+|+.+.++.. ...||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccC
Confidence 5 356788999999997654 4579999999986533 456667889999999999999987765 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||||+||.+|+.+|++|+|||||||||+.....+++.++++.++ |+|||+++|+.. .+.+..|+
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~ 208 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADR 208 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCE
Confidence 99999999999999999999999999999999999999999999877 689999999864 44555565
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=312.06 Aligned_cols=196 Identities=25% Similarity=0.339 Sum_probs=163.0
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+. ++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 46777776552 23599999999999999999999999999999999998654 4899999998764
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000872 756 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 835 (1245)
Q Consensus 756 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr 835 (1245)
. ..+.++|++|+..+++.+||.|++.+....+ .....+..++++++++.+|+.+..+..+ ..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 3 2345799999998888899999998765432 1233444567899999999987666543 4699999999
Q ss_pred HHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhh
Q 000872 836 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 836 ~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. .+.+..|+
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~ 198 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATE 198 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999854 5899999999986 55566676
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=310.15 Aligned_cols=187 Identities=25% Similarity=0.290 Sum_probs=155.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC-----CCCeeEEEEEECCeeCCc-----ccccceEEEEccCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK-----TRGYITGNITISGYPKNQ-----ETFTRISGYCEQND 770 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~-----~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~ 770 (1245)
+.+|+|+|+++++||+++|+|+||||||||+++|+|.. + +.+|+|.++|.+... ..+++.++|++|+.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 36999999999999999999999999999999999986 4 358999999987542 23456789999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeE
Q 000872 771 IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 850 (1245)
Q Consensus 771 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~ 850 (1245)
.++ .+||+|++.+....+. .....+.+++++++++.+|+.+..+.... ...||||||||++||++|+.+|++|+
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~lll 164 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLL 164 (227)
T ss_pred hhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 877 7999999988654331 11222345668899999999876554321 25799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 851 MDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 851 lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||+|||+.++..+.+.|++++++ +|||+++|++. .+.+..|+
T Consensus 165 lDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~ 209 (227)
T cd03260 165 LDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADR 209 (227)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCE
Confidence 99999999999999999999999876 99999999986 45566676
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=310.85 Aligned_cols=202 Identities=25% Similarity=0.309 Sum_probs=165.6
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 4567777665210 0012699999999999999999999999999999999998664 4899999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000872 756 QE------TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 829 (1245)
Q Consensus 756 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 829 (1245)
.. ..++.++|++|++.+++.+|+.|++.+....+. .......+.++++++.+|+.+..+..+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 31 235678999999999999999999988654431 233444566889999999987766543 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~ 210 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDR 210 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998765 899999999985 45566676
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=306.90 Aligned_cols=201 Identities=23% Similarity=0.321 Sum_probs=162.0
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhh
Confidence 4567777765310 0124699999999999999999999999999999999998654 4899999998764
Q ss_pred cc---c---cc-ceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000872 756 QE---T---FT-RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 828 (1245)
Q Consensus 756 ~~---~---~~-~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 828 (1245)
.. . ++ +.++|++|+..+++.+|++|++.+....+. ....+..+++.++++.+|+.+..+..+ +.|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 31 1 22 568999999988889999999988654331 222334456789999999987666543 469
Q ss_pred CHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 829 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 829 SgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||||++|||+|+.+|++|+|||||+|||..++..+.+.|++++++ |+|||+++|++. .+ +..|+
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~ 210 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDR 210 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCE
Confidence 999999999999999999999999999999999999999999998754 899999999986 33 33465
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=317.39 Aligned_cols=190 Identities=25% Similarity=0.296 Sum_probs=159.5
Q ss_pred ccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcc---c----ccceEEEEccC
Q 000872 697 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE---T----FTRISGYCEQN 769 (1245)
Q Consensus 697 ~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~ 769 (1245)
.++.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.++|++|+
T Consensus 33 ~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~ 110 (269)
T cd03294 33 KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQS 110 (269)
T ss_pred hcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEecC
Confidence 34556799999999999999999999999999999999998654 489999999876421 1 13568999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCee
Q 000872 770 DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSII 849 (1245)
Q Consensus 770 ~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il 849 (1245)
+.+++.+||+|++.+....+ .....+.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|
T Consensus 111 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~il 182 (269)
T cd03294 111 FALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDIL 182 (269)
T ss_pred cccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 98888999999998865433 1223444566889999999988777654 469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 850 FMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 850 ~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 183 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~ 230 (269)
T cd03294 183 LMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDR 230 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 999999999999999999999998754 899999999986 45566676
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=328.26 Aligned_cols=202 Identities=25% Similarity=0.343 Sum_probs=168.5
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. ++.+|+|+|+.+++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEc
Confidence 367888887652 34699999999999999999999999999999999998664 489999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
.. ..+++.+||++|+..+++.+||+|++.+....... .....++.+++++++++.+|+.+..+..+ +.|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 43 34567799999999988899999999875321110 01112334567899999999998877654 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++|||+|+++|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++.+..|+
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adr 208 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDE 208 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999877899999999986 55667777
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=326.60 Aligned_cols=197 Identities=27% Similarity=0.427 Sum_probs=161.6
Q ss_pred CeEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCe
Q 000872 673 PFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY 752 (1245)
Q Consensus 673 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~ 752 (1245)
+..++|+|+++++. +++++|+++||+|++||++||+|+|||||||++++|.+..+ .+|+|.|||.
T Consensus 349 ~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCe
Confidence 34699999999874 23459999999999999999999999999999999998755 3899999999
Q ss_pred eCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CcccccccccC
Q 000872 753 PKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE-------LNPLRQALVGL 822 (1245)
Q Consensus 753 ~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-------l~~~~~~~~g~ 822 (1245)
++++ +.+|+.+||||||..++. -||.+|+.|+. ...+.++ |-++-+..| +.+-.+|.+|.
T Consensus 414 dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDEE----VVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHHH----HHHHHHHcCcHHHHHhccccchhhHhh
Confidence 8653 678899999999887775 59999999863 2333332 233333333 34456777887
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhc
Q 000872 823 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAG 898 (1245)
Q Consensus 823 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~~ 898 (1245)
.+.. |||||||||+|||++++||+|+++|||||.||++|+..+++.+++.. .|+|+|++.|+.+ +...||+.
T Consensus 484 rG~~-LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~--ll~~~DkI 555 (591)
T KOG0057|consen 484 RGLM-LSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRLD--LLKDFDKI 555 (591)
T ss_pred cccc-cccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecch--hHhcCCEE
Confidence 6544 99999999999999999999999999999999999999999999843 5899999999874 66778873
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=302.97 Aligned_cols=176 Identities=19% Similarity=0.275 Sum_probs=136.2
Q ss_pred eEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCee
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 753 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~ 753 (1245)
..+..+|++|.++ +.++++++++|-|.=-..+||+||||.||||||++|.|...+. .|+..-|-
T Consensus 585 PvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~--~GE~RKnh-- 648 (807)
T KOG0066|consen 585 PVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN--DGELRKNH-- 648 (807)
T ss_pred CeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC--cchhhccc--
Confidence 3567788887663 3457899999999999999999999999999999999987653 55543331
Q ss_pred CCcccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000872 754 KNQETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 831 (1245)
Q Consensus 754 ~~~~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 831 (1245)
+-.+|+..|.. .+...-|+-|.|.-.. +. +. +.....|-.+||...++|+- ...||||
T Consensus 649 ------rL~iG~FdQh~~E~L~~Eetp~EyLqr~F----Nl--py----q~ARK~LG~fGL~sHAHTik----ikdLSGG 708 (807)
T KOG0066|consen 649 ------RLRIGWFDQHANEALNGEETPVEYLQRKF----NL--PY----QEARKQLGTFGLASHAHTIK----IKDLSGG 708 (807)
T ss_pred ------eeeeechhhhhHHhhccccCHHHHHHHhc----CC--Ch----HHHHHHhhhhhhhhccceEe----eeecCCc
Confidence 23477777753 2444567777764211 11 11 12356678899999988863 4579999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 832 erqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
||-||++|.--++.|+||+|||||+.||.++...+-+.|++. ...||+++|+.+
T Consensus 709 QKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR 762 (807)
T KOG0066|consen 709 QKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER 762 (807)
T ss_pred chHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc
Confidence 999999999999999999999999999999999999999876 467999999864
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=305.59 Aligned_cols=199 Identities=24% Similarity=0.304 Sum_probs=163.0
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
+.++|+++.+. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 46778777652 123599999999999999999999999999999999998654 4899999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000872 756 QE------TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 829 (1245)
Q Consensus 756 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 829 (1245)
.. .+++.++|++|+..+++..|++|++.+....+ ....++..+.++++++.+++.+..+..+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 21 14567899999998888899999998865433 1233444456788999999987666543 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++-+..|+
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 206 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYR 206 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998777899999999986 33344455
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=307.13 Aligned_cols=185 Identities=26% Similarity=0.406 Sum_probs=156.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCH
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ--ETFTRISGYCEQNDIHSPYVTV 778 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv 778 (1245)
+++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|+..+++.+|+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 4699999999999999999999999999999999998654 48999999987643 2345679999999988889999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCC
Q 000872 779 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858 (1245)
Q Consensus 779 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgL 858 (1245)
+|++.+....+. ....+..++++++++.++|.+..++.+ ..||||||||++||++|+.+|++++|||||+||
T Consensus 93 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 93 REHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 999988654432 233344556889999999987766554 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 859 DARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 859 D~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|+.+...+.+.|+++++ ++|||+++|++. .+-+..|+
T Consensus 165 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~ 201 (220)
T cd03263 165 DPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDR 201 (220)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCE
Confidence 99999999999999875 699999999986 34455666
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=312.87 Aligned_cols=189 Identities=28% Similarity=0.328 Sum_probs=155.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc------ccccceEEEEccCCCCCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ------ETFTRISGYCEQNDIHSP 774 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~~~~ 774 (1245)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+||.+... ...++.++|++|+..+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 4699999999999999999999999999999999998653 48999999987643 124567899999998889
Q ss_pred CCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCee
Q 000872 775 YVTVYESLLYSAWLRL-----SSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSII 849 (1245)
Q Consensus 775 ~ltv~e~l~~~~~lr~-----~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il 849 (1245)
.+||+|++.+...... .........+++++++++.+++.+..+.. ...||||||||++||++|+.+|++|
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999987532110 00111223445678899999998766554 3469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 850 FMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 850 ~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+..|+
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~ 214 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADR 214 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999998754 899999999986 45556666
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=273.63 Aligned_cols=187 Identities=27% Similarity=0.384 Sum_probs=158.4
Q ss_pred CcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc-------ccccceEEEEccCCC
Q 000872 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-------ETFTRISGYCEQNDI 771 (1245)
Q Consensus 699 ~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~ 771 (1245)
....||++|++.|++||.+||+|||||||||||-+|+|...+ .+|+|.+.|++... ....+.+|+|+|.-.
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 445799999999999999999999999999999999997654 48999999987532 123467999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEE
Q 000872 772 HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 851 (1245)
Q Consensus 772 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~l 851 (1245)
+.|++|..||+.....++... ..+..+...+.++.+||.+-.+.+. ..|||||+|||+||||+...|+|||-
T Consensus 99 Lip~ltAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGES---SADSRAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCc---cccHHHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEEec
Confidence 999999999999888887532 2333445678899999998776654 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhh
Q 000872 852 DEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 852 DEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||-+||.+|...|.+.|-.+.+ .|.|.|+++|+|+- -...|+
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~L--A~Rc~R 215 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQL--AARCDR 215 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHH--HHhhhh
Confidence 999999999999999999987754 59999999999963 344444
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=306.50 Aligned_cols=186 Identities=28% Similarity=0.374 Sum_probs=154.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc---ccccceEEEEccCCC-CCCCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDI-HSPYV 776 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 776 (1245)
+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+... ..+++.++|++|+.. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 4699999999999999999999999999999999998654 48999999987642 234567899999974 36678
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCC
Q 000872 777 TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 856 (1245)
Q Consensus 777 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTs 856 (1245)
|++|++.+....+ .....+.++.++++++.+|+.+..+..+ +.||||||||++|||+|+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998765432 1223344456789999999987666543 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 857 GLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 857 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||+.++..+.+.|++++++|+|||+++|++. ++-+..|+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~ 203 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADR 203 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999998877999999999975 44444554
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=300.89 Aligned_cols=187 Identities=23% Similarity=0.330 Sum_probs=158.1
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+. .+.+|+|+|+.+++||++||+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 45677776542 23599999999999999999999999999999999998664 4899999998764
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000872 756 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 756 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 833 (1245)
. ..+++.++|++|++.+++.+|+.|++.+....+. . ..+++++++++.+|+.+..++.+ +.||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHH
Confidence 2 2345678999999988889999999987654321 1 22356789999999987666543 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 834 qr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
||++||++|+++|++++|||||+|||+.+...+.+.|++++++|+|||+++|++.
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 9999999999999999999999999999999999999998777899999999975
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=311.15 Aligned_cols=199 Identities=25% Similarity=0.343 Sum_probs=164.5
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+. ++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcc
Confidence 67788877652 23599999999999999999999999999999999998654 4899999998754
Q ss_pred c-----------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000872 756 Q-----------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 824 (1245)
Q Consensus 756 ~-----------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 824 (1245)
. ...++.++|++|+..+++..|++|++.+...... ....++..+.++++++.+|+.+..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 1235678999999988888999999987543211 123344456688999999998766554
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~ 213 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADR 213 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 3479999999999999999999999999999999999999999999998877999999999986 45556666
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=303.58 Aligned_cols=178 Identities=25% Similarity=0.368 Sum_probs=153.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC---c----ccccceEEEEccCCCCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN---Q----ETFTRISGYCEQNDIHS 773 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~---~----~~~~~~~~~v~q~~~~~ 773 (1245)
+.+|+|+|+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. . ...++.++|++|+..++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 4699999999999999999999999999999999998654 4899999998743 1 12456799999999888
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeC
Q 000872 774 PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 853 (1245)
Q Consensus 774 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDE 853 (1245)
+.+|++|++.+....+ .....+..+.++++++.+|+.+..+..+ ..||||||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 8999999998865432 2233445567889999999987766653 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 854 PTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 854 pTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
||+|||+.+...+.+.|+++.++|+|||+++|++.
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999999999999999998777899999999985
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=315.86 Aligned_cols=203 Identities=23% Similarity=0.310 Sum_probs=165.2
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+... ....+.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEG--------TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCC--------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECC
Confidence 6788888776311 00124699999999999999999999999999999999998664 4899999998875
Q ss_pred c-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCc
Q 000872 756 Q-----ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN--PLRQALVGLPGVNG 827 (1245)
Q Consensus 756 ~-----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~~g~~~~~~ 827 (1245)
. ...++.+||++|++. .+...||+|++.|..... +...++..++++++++.+||. +..+.. .+.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 134578999999863 334579999998865432 234555667789999999996 455544 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 828 lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dr 214 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADR 214 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999999765 899999999975 45566777
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=306.79 Aligned_cols=184 Identities=29% Similarity=0.416 Sum_probs=152.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcc---c-ccceEEEEccCCCCCCCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE---T-FTRISGYCEQNDIHSPYV 776 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~v~q~~~~~~~l 776 (1245)
+.+|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.++|++|+..+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 3699999999999999999999999999999999998654 489999999876431 1 245689999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCC
Q 000872 777 TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV-ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 855 (1245)
Q Consensus 777 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpT 855 (1245)
|++|++.+....+. ..+..+.+.++++.+ ++.+..++. .+.||||||||++|||+|+.+|++|+|||||
T Consensus 91 t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 91 TVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred cHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99999988654331 122334567778887 466555544 3469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 856 SGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 856 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 201 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADR 201 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccE
Confidence 999999999999999998777899999999985 44556666
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=309.71 Aligned_cols=186 Identities=26% Similarity=0.362 Sum_probs=156.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVT 777 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lt 777 (1245)
+.+|+|+|+.+++||+++|+||||||||||+++|+|..++ .+|+|.+||.+... ..+++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 3599999999999999999999999999999999998654 48999999987542 234567899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCC
Q 000872 778 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP--LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 855 (1245)
Q Consensus 778 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpT 855 (1245)
++|++.+....+ ....++..+.++++++.+|+.+ ..+.. .+.||||||||++||++|+.+|++++|||||
T Consensus 92 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999998865443 1233444567889999999985 44543 3569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 856 SGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 856 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~ 205 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADR 205 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999998764 899999999985 44555665
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=327.30 Aligned_cols=191 Identities=26% Similarity=0.383 Sum_probs=161.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+....
T Consensus 33 i~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~ 109 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLEL 109 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999987 999999999876432 135799999999999999999999987543
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.+.. .. +....++++++.+||++..++.++ .||||||||++
T Consensus 110 ~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qRv~ 150 (343)
T PRK11153 110 AGTP----------KA------------------------EIKARVTELLELVGLSDKADRYPA-----QLSGGQKQRVA 150 (343)
T ss_pred cCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHH
Confidence 2110 00 011235678899999887776554 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
|||||+.+|++|||||||+|||+.++..+.+.|+++++. .++++++++|+.+++.++||++++|++|++++.|+.+++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRE-LGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998753 3667888999999999999999999999999999988763
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=278.73 Aligned_cols=190 Identities=24% Similarity=0.374 Sum_probs=162.8
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCcc
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRY 81 (1245)
Q Consensus 2 ~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~~ 81 (1245)
++++||||||||||||+++|.++|. .|+|.+||++++.-.. .-|.|+|++.++|.+|+.||+.|+.++.+.++..
T Consensus 34 vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~ 108 (259)
T COG4525 34 VVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQ 108 (259)
T ss_pred EEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCc--cceeEeccCccchhhHHHHHHHHHHHhcCCCHHH
Confidence 6899999999999999999999998 9999999998865332 3489999999999999999999999988753211
Q ss_pred chhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHHhc
Q 000872 82 DMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVG 161 (1245)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~~ 161 (1245)
...++.+.+...||++..+..|- .||||||||+.|||||..
T Consensus 109 ----------------------------------R~~~a~q~l~~VgL~~~~~~~i~-----qLSGGmrQRvGiARALa~ 149 (259)
T COG4525 109 ----------------------------------RREIAHQMLALVGLEGAEHKYIW-----QLSGGMRQRVGIARALAV 149 (259)
T ss_pred ----------------------------------HHHHHHHHHHHhCcccccccceE-----eecchHHHHHHHHHHhhc
Confidence 12345678899999988776554 599999999999999999
Q ss_pred CCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEec--CCcEEEecChhhHHHH
Q 000872 162 PAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVS--DGQIVYQGPLEHVEQF 236 (1245)
Q Consensus 162 ~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~--~G~iv~~G~~~~~~~~ 236 (1245)
+|++|+||||+++||.-+++++.+.|-++.+. .++-+..|||+.+|+.-++++++||+ .|+|+..=+++..+.|
T Consensus 150 eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~-tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 150 EPQLLLLDEPFGALDALTREQMQELLLDLWQE-TGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred CcceEeecCchhhHHHHHHHHHHHHHHHHHHH-hCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 99999999999999999999999999888775 46667779999999999999999997 5899987766644443
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=307.92 Aligned_cols=185 Identities=28% Similarity=0.416 Sum_probs=153.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++....+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-- 102 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGV-- 102 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCC--
Confidence 47999999999999999999999887 999999998875432 245799999999889999999999876432110
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
... +....++++++.+||.+..++.++ .||||||||++|||||
T Consensus 103 --------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al 145 (213)
T cd03259 103 --------PKA------------------------EIRARVRELLELVGLEGLLNRYPH-----ELSGGQQQRVALARAL 145 (213)
T ss_pred --------CHH------------------------HHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHH
Confidence 000 001234568888999877766554 5999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEec
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G 228 (1245)
+.+|+++||||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.++||++++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRE-LGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998653 3567888999999999999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=309.26 Aligned_cols=190 Identities=31% Similarity=0.400 Sum_probs=158.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP 104 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999887 99999999876432 12356999999999999999999999865432100
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
.. +....++++++.+||++..++.++ .||||||||++||+|
T Consensus 105 ----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~la~a 145 (220)
T cd03265 105 ----------GA------------------------ERRERIDELLDFVGLLEAADRLVK-----TYSGGMRRRLEIARS 145 (220)
T ss_pred ----------HH------------------------HHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHH
Confidence 00 011235678899999887776665 599999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
++.+|++++|||||+|||+.++..+.+.|+++++. .++++++++|+.+++...+|++++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999999998653 256788899999999999999999999999999887653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=306.40 Aligned_cols=187 Identities=27% Similarity=0.413 Sum_probs=152.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcccccceEEEEccCCCCC--CCCCH
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHS--PYVTV 778 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~ltv 778 (1245)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. ..++.++|++|++.+. ..+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 4699999999999999999999999999999999998654 4899999997653 3456789999997653 34799
Q ss_pred HHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCC
Q 000872 779 YESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 857 (1245)
Q Consensus 779 ~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsg 857 (1245)
+|++.+....+.. .....++.+++++++++.+|+.+..+..+ ..||||||||++||++|+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 00112234456889999999987666543 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 858 LDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 858 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~ 201 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDR 201 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999999999998777899999999986 44455565
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=307.72 Aligned_cols=199 Identities=21% Similarity=0.335 Sum_probs=164.3
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+. ++.+|+|+|++++|||++||+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI--TSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 45777776652 23599999999999999999999999999999999998653 4899999998864
Q ss_pred c-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 756 Q-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 756 ~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
. ..+++.++|++|+..+++.+||.|++.+...... .....+.++.+.++++.+|+.+..+..+ +.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 3 2345678999999988889999999987542111 1233445567889999999987666543 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++||++|+.+|++++|||||+|||..++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 205 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASR 205 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998777999999999986 44455666
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=311.95 Aligned_cols=202 Identities=23% Similarity=0.277 Sum_probs=161.6
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+||.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhh
Confidence 45677766542 024599999999999999999999999999999999998654 4899999998754
Q ss_pred c------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000872 756 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRL-----SSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 824 (1245)
Q Consensus 756 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~-----~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 824 (1245)
. ..+++.++|++|+..+++.+||+|++.+...... .......+.+++++++++.+|+.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 1245679999999988899999999976421100 00111233456688999999998766654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+..|+
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~ 215 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADR 215 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCe
Confidence 3469999999999999999999999999999999999999999999998654 899999999986 44556676
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.10 Aligned_cols=191 Identities=27% Similarity=0.382 Sum_probs=160.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+.....+..
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 108 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS 108 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 999999998764322 2467999999999899999999998754322100
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
.. +....++.+++.+||++..++.++ .||||||||++||+|
T Consensus 109 ----------~~------------------------~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~la~a 149 (303)
T TIGR01288 109 ----------TR------------------------EIEAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLTLARA 149 (303)
T ss_pred ----------HH------------------------HHHHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHHHHHH
Confidence 00 001224567888999888877665 599999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
|+.+|+++||||||+|||+.++..+.+.|+++++ .+++|++++|+.+++.++||++++|++|++++.|+++++.+
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999865 36678889999999999999999999999999999888743
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=302.27 Aligned_cols=195 Identities=34% Similarity=0.472 Sum_probs=161.2
Q ss_pred EEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc
Q 000872 677 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 756 (1245)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~ 756 (1245)
+++|+++.+. ++.+|+|+|+++++| ++||+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCcccc
Confidence 4667776542 235999999999999 9999999999999999999998654 48999999987543
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000872 757 --ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834 (1245)
Q Consensus 757 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerq 834 (1245)
..+++.++|++|+..+++.+||.|++.+....+. ...++.++.++++++.+|+.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHH
Confidence 2345678999999999999999999988655431 223334556889999999987766554 469999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 835 r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~ 198 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQ 198 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999875 599999999986 34455565
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=350.47 Aligned_cols=192 Identities=28% Similarity=0.431 Sum_probs=155.8
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 2 ~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+||+|+||||||||+|+|+|+++|. +|+|.+||.++..... ++.+|||+||+.++ +.||+||+.++...
T Consensus 502 vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~p~---- 573 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGNPE---- 573 (709)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhh-cCcHHHHHhcCCCC----
Confidence 7999999999999999999999988 9999999999876654 68899999988755 67999999985421
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
.+.++..++....+ ..| ....++..+||.+|+.+. +||||||||++||||
T Consensus 574 ---------------------~~~e~i~~A~~~ag-----~~~---fI~~lP~gy~t~v~E~G~-~LSGGQrQrlalARa 623 (709)
T COG2274 574 ---------------------ATDEEIIEAAQLAG-----AHE---FIENLPMGYDTPVGEGGA-NLSGGQRQRLALARA 623 (709)
T ss_pred ---------------------CCHHHHHHHHHHhC-----cHH---HHHhcccccccccccCCC-CCCHHHHHHHHHHHH
Confidence 11111111111111 112 233588999999997665 799999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
|+++|+||+||||||+||+.+++.+.+.|.++.+ ++|+|+++|..+ ..+.||+|+||++|+|+.+|+++++.+
T Consensus 624 Ll~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~---~~T~I~IaHRl~-ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 624 LLSKPKILLLDEATSALDPETEAIILQNLLQILQ---GRTVIIIAHRLS-TIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred hccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc---CCeEEEEEccch-HhhhccEEEEccCCceeccCCHHHHHH
Confidence 9999999999999999999999999999998753 456666777764 457789999999999999999999865
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=310.71 Aligned_cols=200 Identities=21% Similarity=0.306 Sum_probs=164.8
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 478888887652 23599999999999999999999999999999999998654 489999999876
Q ss_pred Ccc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000872 755 NQE------TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 828 (1245)
Q Consensus 755 ~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 828 (1245)
... ..++.++|++|+..+++.+|+.|++.+...... ....++.++.+.++++.+|+.+..+..+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 134568999999988889999999987543211 1223334456788999999988776654 469
Q ss_pred CHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 829 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 829 SgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~ 213 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADH 213 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCE
Confidence 999999999999999999999999999999999999999999998765 899999999975 45556676
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=304.83 Aligned_cols=197 Identities=26% Similarity=0.361 Sum_probs=161.4
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+. ++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcc
Confidence 45677776552 23599999999999999999999999999999999998654 4899999998764
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000872 756 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 756 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 833 (1245)
. ...++.++|++|+..+++.+|++|++.+.+..+ ....++..+.++++++.+|+.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 2 122356899999988888999999998765433 2233344556889999999987766554 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhh
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 834 qr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|++..- +..|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~--~~~d~ 201 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEI--EADDR 201 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhH--hhCCE
Confidence 999999999999999999999999999999999999999875 589999999998633 23554
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=305.19 Aligned_cols=204 Identities=24% Similarity=0.286 Sum_probs=158.8
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
+.++|+++.+... .....+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 4577887765310 0012599999999999999999999999999999999998654 4899999998764
Q ss_pred c------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000872 756 Q------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVN 826 (1245)
Q Consensus 756 ~------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 826 (1245)
. ..+++.++|++|+. .+.+.+||+|++.+......+. ...+..+..++++++.+++. +..+.. ..
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23456799999998 4567899999998765433211 11111122235788999985 444543 34
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+-+..|+
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 215 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADR 215 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCe
Confidence 69999999999999999999999999999999999999999999998765 899999999986 44445665
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=297.06 Aligned_cols=174 Identities=25% Similarity=0.339 Sum_probs=149.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCH
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ--ETFTRISGYCEQNDIHSPYVTV 778 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv 778 (1245)
+.+|+|+|+.+++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++.+|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSA 90 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccchHHhhhheEEeccCcccccCCcH
Confidence 4699999999999999999999999999999999997654 48999999987532 2345678999999888888999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCC
Q 000872 779 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858 (1245)
Q Consensus 779 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgL 858 (1245)
.|++.+....+. . + ++.++++++.+|+.+..++.+ ..||||||||++||++++.+|++++|||||+||
T Consensus 91 ~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 158 (198)
T TIGR01189 91 LENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTAL 158 (198)
T ss_pred HHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 999987654331 1 1 235788999999987766554 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 859 DARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 859 D~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
|..+...+.+.|++++++|+|||+++|++.
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 159 DKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 999999999999998777999999999985
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=327.56 Aligned_cols=191 Identities=23% Similarity=0.340 Sum_probs=161.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-------QRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+||+||+.++..
T Consensus 56 i~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~ 132 (400)
T PRK10070 56 IFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132 (400)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999987 9999999998764322 2469999999999999999999998764
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
..+.. .. +....++++++.+||.+..+..+. .||||||||+
T Consensus 133 ~~~~~----------~~------------------------~~~~~~~e~L~~~gL~~~~~~~~~-----~LSgGq~QRv 173 (400)
T PRK10070 133 LAGIN----------AE------------------------ERREKALDALRQVGLENYAHSYPD-----ELSGGMRQRV 173 (400)
T ss_pred hcCCC----------HH------------------------HHHHHHHHHHHHcCCChhhhcCcc-----cCCHHHHHHH
Confidence 32210 00 011235668899999877766554 5999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++..++|++++|++|+++..|+++++
T Consensus 174 ~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~-~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 174 GLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK-HQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252 (400)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999998653 366788899999999999999999999999999998776
Q ss_pred H
Q 000872 234 E 234 (1245)
Q Consensus 234 ~ 234 (1245)
.
T Consensus 253 ~ 253 (400)
T PRK10070 253 L 253 (400)
T ss_pred H
Confidence 3
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=324.17 Aligned_cols=191 Identities=25% Similarity=0.456 Sum_probs=160.9
Q ss_pred CCeEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECC
Q 000872 672 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG 751 (1245)
Q Consensus 672 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g 751 (1245)
++.++..+|+++.++ +++++++|+|++++||+++||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 355677779988764 223799999999999999999999999999999999998764 489999999
Q ss_pred eeC---CcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc------cccccC
Q 000872 752 YPK---NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR------QALVGL 822 (1245)
Q Consensus 752 ~~~---~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~------~~~~g~ 822 (1245)
.+. +...+++.++||+|++.+++ -|++||+.++. .+ ..++.+.++++..||.+.. |+.+|+
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~----~s~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PD----ASDEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----Cc----CCHHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 875 44678899999999998876 59999998752 11 2234467888888887654 445554
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 823 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 823 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
+.++|||||+|||++||||+++++++++||||+|||.+|++.|++.|.++++ ++||++++|++.
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~ 516 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE 516 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH
Confidence 3578999999999999999999999999999999999999999999999986 599999999975
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=314.48 Aligned_cols=204 Identities=25% Similarity=0.282 Sum_probs=165.4
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+.... ...+.+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.+||.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 67889988874210 0123599999999999999999999999999999999998664 4899999999763
Q ss_pred c-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000872 756 Q-------ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVN 826 (1245)
Q Consensus 756 ~-------~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 826 (1245)
. ..+++.+|||+|++. .+...||+|++.|..... ..+.++..++++++++.+||. +..++. .+
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 2 234567999999852 233479999998875432 234444556789999999996 555554 34
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhc
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDAG 898 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~~ 898 (1245)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.+..|+.
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv 216 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQI 216 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 79999999999999999999999999999999999999999999999764 899999999986 566777873
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=314.84 Aligned_cols=191 Identities=25% Similarity=0.361 Sum_probs=159.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-------QRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.+...
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 128 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 128 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence 47999999999999999999999987 9999999988754321 2469999999999999999999998653
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
..+. ... +....++++++.+||.+..++.++ .||||||||+
T Consensus 129 ~~~~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv 169 (269)
T cd03294 129 VQGV----------PRA------------------------EREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRV 169 (269)
T ss_pred hcCC----------CHH------------------------HHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHH
Confidence 2210 000 001234668889999887777665 5999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++. .++++++++|+.+++.++||++++|++|++++.|+++++
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE-LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998653 356788899999999999999999999999999988766
Q ss_pred H
Q 000872 234 E 234 (1245)
Q Consensus 234 ~ 234 (1245)
.
T Consensus 249 ~ 249 (269)
T cd03294 249 L 249 (269)
T ss_pred H
Confidence 3
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=310.58 Aligned_cols=199 Identities=24% Similarity=0.375 Sum_probs=159.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.+||+||+.++.....
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~ 104 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQART 104 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcc
Confidence 47999999999999999999999887 9999999988754332 2459999999999999999999998654221
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
...... .. ...+ ..+....++++++.+||++..++.++ .||||||||++||
T Consensus 105 ~~~~~~----~~---------~~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la 155 (236)
T cd03219 105 GSGLLL----AR---------ARRE-----------EREARERAEELLERVGLADLADRPAG-----ELSYGQQRRLEIA 155 (236)
T ss_pred cccccc----cc---------cccc-----------HHHHHHHHHHHHHHcCccchhhCChh-----hCCHHHHHHHHHH
Confidence 000000 00 0000 00112245678899999877665554 5999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
|||+.+|++++|||||+|||+.++..+.+.|+++++ .++++++++|+.+++.++||++++|++|++++.|+++++
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRE--RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 999999999999999999999999999999999865 356788899999999999999999999999999988765
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=307.36 Aligned_cols=199 Identities=28% Similarity=0.387 Sum_probs=164.3
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+. ++.+|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 66777776542 23699999999999999999999999999999999998654 4899999998764
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000872 756 QE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 831 (1245)
Q Consensus 756 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 831 (1245)
.. ..++.++|++|++.+++.+|+.||+.+....+. ....++.+.+++++++.+|+.+..+.. .+.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 31 234679999999988888999999987643321 122334456788999999998765544 3479999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 832 erqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||++||++|+.+|++|+|||||+|||+.++..+.+.++++.++|+|||+++|++. ++.+..|+
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~ 206 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCER 206 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCE
Confidence 999999999999999999999999999999999999999998777999999999985 55566676
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=307.29 Aligned_cols=191 Identities=21% Similarity=0.288 Sum_probs=161.2
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEH
Confidence 488999988763 23599999999999999999999999999999999998654 489999999765
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000872 755 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834 (1245)
Q Consensus 755 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerq 834 (1245)
. .+++.++|++|+..+++.+||+|++.+... . ..++++.++++.+|+.+..+..+ ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 345678999999988888999999987421 0 12345788999999987666543 469999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhh
Q 000872 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 835 r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||+++|++. .+.+..|+
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~ 203 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADR 203 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999865 4899999999986 44556676
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=310.99 Aligned_cols=200 Identities=26% Similarity=0.339 Sum_probs=165.4
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.++ ..+.+|+|+|+++++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 367888887663 123599999999999999999999999999999999998654 489999999886
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 755 NQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
.. ...++.+||++|++. .++..||.|++.|..... .....+.+++++++++.+||.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 234567999999863 445689999998764322 2334445567899999999987776654 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~ 207 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQ 207 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999877999999999976 45566777
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=296.48 Aligned_cols=183 Identities=30% Similarity=0.532 Sum_probs=153.4
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eeEEEEEECCee
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYP 753 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~-~~~G~i~~~g~~ 753 (1245)
.++|+|+++.++.+ .+++.+|+|+|+.+++||++||+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999988532 13457999999999999999999999999999999999986522 458999999987
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000872 754 KNQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 831 (1245)
Q Consensus 754 ~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 831 (1245)
... ...++.++|++|++.+++.+||+|++.+....+ .+. ....||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~-----~~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE-----FVRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----chhhCCHH
Confidence 643 235667999999999999999999998754211 121 23469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 832 erqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ ++|+|+++|+...++.+..|+
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~ 189 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDK 189 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCe
Confidence 999999999999999999999999999999999999999998765 678888888876677777776
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=307.49 Aligned_cols=180 Identities=26% Similarity=0.408 Sum_probs=150.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 107 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI 107 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHh
Confidence 47999999999999999999999887 999999998775321 235799999999999999999999986543
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.+.. .. +.+..++++++.+||++..+..++ +||||||||++
T Consensus 108 ~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~ 148 (216)
T TIGR00960 108 IGVP----------PR------------------------DANERVSAALEKVGLEGKAHALPM-----QLSGGEQQRVA 148 (216)
T ss_pred cCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHH
Confidence 2100 00 011235668889999877766554 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcE
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQI 224 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~i 224 (1245)
|||||+.+|+++||||||+|||+.++..+.+.|+++++ .+.++++++|+.+++..+||++++|++|++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR--RGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999998864 356788899999999999999999999975
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=317.15 Aligned_cols=191 Identities=27% Similarity=0.395 Sum_probs=157.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc-----ccceEEEeccccc-cCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV-----PQRTAAYISQHDI-HIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~~~-~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+|||+|++. .+...||+||+.|+...
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 111 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN 111 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHH
Confidence 47999999999999999999999987 999999999875432 2467999999863 34467999999986532
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc--ccccccccCccccccccccchh
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD--VCADTVVGDEMLRGISGGQRKR 152 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~t~vg~~~~~~LSGGqrqR 152 (1245)
.+. .. .+....++++++.+||+ +..++.+ +.||||||||
T Consensus 112 ~~~----------~~------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~LSgGq~qr 152 (287)
T PRK13637 112 LGL----------SE------------------------EEIENRVKRAMNIVGLDYEDYKDKSP-----FELSGGQKRR 152 (287)
T ss_pred CCC----------CH------------------------HHHHHHHHHHHHHcCCCchhhccCCc-----ccCCHHHHHH
Confidence 210 00 01122356788999997 4455444 4699999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhh
Q 000872 153 VTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEH 232 (1245)
Q Consensus 153 v~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~ 232 (1245)
++|||||+.+|++|||||||+|||+.++.++.+.|+++++. .++||++++|+.+++..+||+|++|++|++++.|++++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998753 36788889999999999999999999999999999887
Q ss_pred HH
Q 000872 233 VE 234 (1245)
Q Consensus 233 ~~ 234 (1245)
+.
T Consensus 232 ~~ 233 (287)
T PRK13637 232 VF 233 (287)
T ss_pred HH
Confidence 63
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=309.72 Aligned_cols=194 Identities=28% Similarity=0.411 Sum_probs=158.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.++........
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 106 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSE 106 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccc
Confidence 47999999999999999999999887 9999999988654322 3569999999998889999999998653221000
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
+. ... +....++.+++.+||.+..+..++ .||||||||++|||||
T Consensus 107 ~~------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al 151 (239)
T cd03296 107 RP------PEA------------------------EIRAKVHELLKLVQLDWLADRYPA-----QLSGGQRQRVALARAL 151 (239)
T ss_pred cC------CHH------------------------HHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHH
Confidence 00 000 011234668888999876666554 5999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+.+|++++|||||+|||+.++..+.+.|+++++. .++++++++|+.+++...||++++|++|++++.|+++++
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE-LHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999999999999999998753 356788899999999999999999999999999987765
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=319.69 Aligned_cols=190 Identities=28% Similarity=0.430 Sum_probs=162.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.+||++|++.+++.+||+||+.+.+...+..
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~ 106 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK 106 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 999999998875422 2457999999999999999999999866543210
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
. .+....++++++.+||.+..++.++ .||||||||++||+|
T Consensus 107 ~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la~a 147 (301)
T TIGR03522 107 G----------------------------------QLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQRVGLAQA 147 (301)
T ss_pred H----------------------------------HHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHHHHHHHHHH
Confidence 0 0011235678999999988876665 599999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
|+++|+++||||||+|||+.++.++++.|++++. +++|++++|+.+++.++||++++|++|++++.|+.+++..
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK---DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999853 4678889999999999999999999999999999988754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=308.68 Aligned_cols=189 Identities=23% Similarity=0.406 Sum_probs=157.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.+.....+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG 104 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC
Confidence 47999999999999999999999987 9999999987654321 2469999999999999999999987643211
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
. ... +....++++++.+||++..++.++ .||||||||++||
T Consensus 105 ~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 145 (232)
T cd03218 105 L----------SKK------------------------EREEKLEELLEEFHITHLRKSKAS-----SLSGGERRRVEIA 145 (232)
T ss_pred C----------CHH------------------------HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHH
Confidence 0 000 011234668888999877766554 5999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
|||+.+|++++|||||+|||+.++..+.+.|+++++ .++++++++|+.+++.+.||++++|++|++++.|+.+++
T Consensus 146 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD--RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999999999999999999999998865 356788899999999999999999999999999987765
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=297.91 Aligned_cols=186 Identities=30% Similarity=0.410 Sum_probs=156.6
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|++..+. ++.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeCc
Confidence 66788876652 23599999999999999999999999999999999997653 4899999998753
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000872 756 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 835 (1245)
Q Consensus 756 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr 835 (1245)
....++.++|++|++.+++.+|+.|++.+....+. . .++.++++++.+|+.+..+..+ +.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22256678999999888888999999987554321 1 1234788999999987665543 4699999999
Q ss_pred HHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 836 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 836 ~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 188 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL 188 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 99999999999999999999999999999999999998777999999999985
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=296.98 Aligned_cols=172 Identities=28% Similarity=0.375 Sum_probs=149.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCH
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ--ETFTRISGYCEQNDIHSPYVTV 778 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv 778 (1245)
+.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|+..+++.+|+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 4699999999999999999999999999999999998654 48999999987532 3355679999999888889999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCC
Q 000872 779 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858 (1245)
Q Consensus 779 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgL 858 (1245)
+|++.+.... . .+++++++++.+|+.+..++.+ ..||||||||++||++|+.+|++++|||||+||
T Consensus 91 ~e~l~~~~~~------~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 91 LENLRFWHAD------H---SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred HHHHHhhccc------c---cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9999874311 1 2345788999999987766543 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 859 DARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 859 D~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
|+.+...+.+.|+++.++|+|+|+++|++.
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 999999999999998777999999999986
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=347.78 Aligned_cols=188 Identities=28% Similarity=0.417 Sum_probs=157.9
Q ss_pred eEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCee
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 753 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~ 753 (1245)
..++++|++|+++. ++++|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP--LQGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 36999999998742 12499999999999999999999999999999999998664 48999999988
Q ss_pred CC--cccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000872 754 KN--QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 824 (1245)
Q Consensus 754 ~~--~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~~ 824 (1245)
++ ...+++.++||+|++.+++. |++||+.++. ++. .+++++++++..++.+ -.||.+|..+
T Consensus 399 i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~-----~~~----~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 468 (529)
T TIGR02868 399 VSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGR-----PDA----TDEELWAALERVGLADWLRSLPDGLDTVLGEGG 468 (529)
T ss_pred hhhHHHHHHhheEEEccCcccccc-cHHHHHhccC-----CCC----CHHHHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence 65 34567889999999988864 9999998741 112 2334677777777754 3477888654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQP 887 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p 887 (1245)
.+||||||||++|||||+++|+||+||||||+||++++..|++.|++.. +++|+|+++|++
T Consensus 469 -~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 469 -ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 4699999999999999999999999999999999999999999999764 579999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=315.19 Aligned_cols=203 Identities=23% Similarity=0.324 Sum_probs=164.6
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.++.. ....+.+|+|||++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEK--------QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEc
Confidence 58899999887421 00123599999999999999999999999999999999998664 489999999875
Q ss_pred Cc-------------------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc
Q 000872 755 NQ-------------------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 813 (1245)
Q Consensus 755 ~~-------------------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~ 813 (1245)
.. ..+++.+|||+|++ .+++ .||+|++.|..... ..+.++..++++++++.+||.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13467799999986 3454 59999998864322 233444556788999999996
Q ss_pred -ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHH
Q 000872 814 -PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIF 892 (1245)
Q Consensus 814 -~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~ 892 (1245)
+..+.. ...||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ .+.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 444443 3579999999999999999999999999999999999999999999998777999999999986 455
Q ss_pred HHhhh
Q 000872 893 EAFDA 897 (1245)
Q Consensus 893 ~~fd~ 897 (1245)
+..|+
T Consensus 241 ~~adr 245 (320)
T PRK13631 241 EVADE 245 (320)
T ss_pred HhCCE
Confidence 66676
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=308.59 Aligned_cols=190 Identities=27% Similarity=0.401 Sum_probs=158.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++||+.+....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 109 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEI 109 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999987 999999999875432 145699999999999999999999886432
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.+. + .. +....++++++.+||++..+..+. .||||||||++
T Consensus 110 ~~~----~------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ 150 (233)
T cd03258 110 AGV----P------KA------------------------EIEERVLELLELVGLEDKADAYPA-----QLSGGQKQRVG 150 (233)
T ss_pred cCC----C------HH------------------------HHHHHHHHHHHHCCChhhhhcChh-----hCCHHHHHHHH
Confidence 210 0 00 001234668889999877665554 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
|||||+.+|++++|||||+|||+.++..+.+.|+++++. +++++++++|+.+++..+||++++|++|++++.|+.+++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRE-LGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999988653 366788899999999999999999999999999987765
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=306.14 Aligned_cols=206 Identities=23% Similarity=0.267 Sum_probs=163.9
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~---~~~G~i~~~g 751 (1245)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 367888877652 235999999999999999999999999999999999976431 3589999999
Q ss_pred eeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000872 752 YPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 828 (1245)
Q Consensus 752 ~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 828 (1245)
.++.. ..+++.++|++|++.+++.+||.||+.+....+.. .....+.++.++++++.+|+.+..+... +.....|
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~L 147 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRL-DAPAGKL 147 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhh-cCCcccC
Confidence 87642 24456799999999888899999999886543211 1123344566889999999864211111 1124579
Q ss_pred CHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 829 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 829 SgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ |+|||+++|++. .+.+..|+
T Consensus 148 SgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~ 214 (250)
T PRK14247 148 SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDY 214 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999999999999864 899999999986 45566676
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=305.36 Aligned_cols=199 Identities=24% Similarity=0.318 Sum_probs=163.7
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEec
Confidence 367888887652 23599999999999999999999999999999999998654 489999999875
Q ss_pred Cc---------ccccceEEEEccCCCCCCCCCHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000872 755 NQ---------ETFTRISGYCEQNDIHSPYVTVYESLLYS-AWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 824 (1245)
Q Consensus 755 ~~---------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~-~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 824 (1245)
.. ...++.++|++|+..+++.+|+.|++.+. ...+ +....+..+.+.+.++.+|+.+..+..+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 139 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP---- 139 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence 20 12356789999999999999999999643 2222 1223344566889999999987666553
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+.||||||||++|||+|+.+|++++|||||+|||..++..+.+.|+++.++|+|||+++|++. ++-+..|+
T Consensus 140 -~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~ 210 (242)
T PRK11124 140 -LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASR 210 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCE
Confidence 469999999999999999999999999999999999999999999998777999999999986 44455666
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=305.10 Aligned_cols=185 Identities=27% Similarity=0.402 Sum_probs=154.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSR 80 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~ 80 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|+++.. .++.++|++|++.+++.+|++||+.++....+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~--- 103 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGV--- 103 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHcCC---
Confidence 47999999999999999999999887 9999999988753 345799999999888889999999886543210
Q ss_pred cchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHHh
Q 000872 81 YDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV 160 (1245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1245)
... +....++++++.+||.+..+..++ .||||||||++|||||+
T Consensus 104 -------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~ 147 (220)
T cd03293 104 -------PKA------------------------EARERAEELLELVGLSGFENAYPH-----QLSGGMRQRVALARALA 147 (220)
T ss_pred -------CHH------------------------HHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHH
Confidence 000 001235668889999877666554 59999999999999999
Q ss_pred cCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEec--CCcEEEecCh
Q 000872 161 GPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVS--DGQIVYQGPL 230 (1245)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~--~G~iv~~G~~ 230 (1245)
.+|+++||||||+|||+.++..+.+.|+++.+. .++++++++|+.+++...||++++|+ +|++++.++.
T Consensus 148 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 148 VDPDVLLLDEPFSALDALTREQLQEELLDIWRE-TGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999988543 35678889999999999999999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=312.19 Aligned_cols=203 Identities=22% Similarity=0.328 Sum_probs=165.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.++.. ....+.+|+|||++|++||++||+|+||||||||+++|+|..++ .+|+|.+||.++
T Consensus 2 ~l~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKG--------TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCC--------CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 46788998887421 00123599999999999999999999999999999999998664 489999999886
Q ss_pred Cc-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000872 755 NQ-------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPG 824 (1245)
Q Consensus 755 ~~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~ 824 (1245)
.. ..+++.+||++|++ .+++ .||.|++.|..... ..+.++.+++++++++.+||. +..++.
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~----- 142 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS----- 142 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 42 13567799999985 3444 59999998865332 234455566789999999996 555544
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|++. ++.+..|+
T Consensus 143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dr 215 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADE 215 (286)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 357999999999999999999999999999999999999999999999875 4899999999986 45566776
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=297.22 Aligned_cols=196 Identities=22% Similarity=0.281 Sum_probs=162.8
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
-+.++|+++.+. ++.+++++|+.+++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 478888887642 23599999999999999999999999999999999998654 489999999876
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000872 755 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834 (1245)
Q Consensus 755 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerq 834 (1245)
.....++.++|++|++.+++.+|+.|++.+....+. . ..++.++++++.+++.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543345568999999888888999999987654321 1 12345678899999987766654 469999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 835 r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|++||++++.+|++++|||||+|||+.+...+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~ 206 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTR 206 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcce
Confidence 999999999999999999999999999999999999998878999999999986 33444443
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=306.90 Aligned_cols=199 Identities=21% Similarity=0.268 Sum_probs=164.8
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 477888887653 23599999999999999999999999999999999998654 489999999875
Q ss_pred Cc----------------ccccceEEEEccCCCCCCCCCHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHHHcCCcccc-
Q 000872 755 NQ----------------ETFTRISGYCEQNDIHSPYVTVYESLLYSAW-LRLSSEVNSKTREMFVEEVMELVELNPLR- 816 (1245)
Q Consensus 755 ~~----------------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-lr~~~~~~~~~~~~~v~~~l~~l~l~~~~- 816 (1245)
.. ..+++.++|++|++.+++.+|++|++.+... .. .....+.+++++++++.+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 31 1335678999999999999999999987542 21 123444556788999999997653
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhh
Q 000872 817 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 896 (1245)
Q Consensus 817 ~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd 896 (1245)
+.. .+.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|++++++|+|||+++|++. ++-+..|
T Consensus 147 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 432 3579999999999999999999999999999999999999999999999877999999999986 4445567
Q ss_pred h
Q 000872 897 A 897 (1245)
Q Consensus 897 ~ 897 (1245)
+
T Consensus 221 ~ 221 (257)
T PRK10619 221 H 221 (257)
T ss_pred E
Confidence 6
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=325.09 Aligned_cols=192 Identities=27% Similarity=0.431 Sum_probs=152.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
.|+|+|+||||||||+++|+|+++|+ +|+|.+||.+..+.. ++++++||+|+|.+++ .|+||||.++..-.
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~~~-- 422 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARPDA-- 422 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCCcC--
Confidence 37999999999999999999999987 999999998876654 5789999999988665 69999999864210
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
++.+. .+. ... ..+.+.+.-++..||.+|+.+ ++|||||+|||++||
T Consensus 423 ----------s~e~i----------~~a---l~~---------a~l~~~v~~p~GLdt~ige~G-~~LSgGQ~QRlaLAR 469 (559)
T COG4988 423 ----------SDEEI----------IAA---LDQ---------AGLLEFVPKPDGLDTVIGEGG-AGLSGGQAQRLALAR 469 (559)
T ss_pred ----------CHHHH----------HHH---HHH---------hcHHHhhcCCCcccchhccCC-CCCCHHHHHHHHHHH
Confidence 00000 000 000 001222222567799999754 579999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
||+++++++++||||++||.++++.|.+.|.++++ ++|+++++|....+ ..+|+|++|++|+++++|.++++.+
T Consensus 470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~---~ktvl~itHrl~~~-~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAK---QKTVLVITHRLEDA-ADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh---CCeEEEEEcChHHH-hcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999999999999999999999999875 46777788887655 5579999999999999999998843
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=303.77 Aligned_cols=183 Identities=25% Similarity=0.387 Sum_probs=153.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSR 80 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~ 80 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+|++||+.+.....+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~-- 101 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLK-- 101 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCC--
Confidence 47999999999999999999999887 9999999987653 23467999999999899999999998765432110
Q ss_pred cchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHHh
Q 000872 81 YDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV 160 (1245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1245)
.. +..+.++++++.+||++..++.++ +||||||||++||+||+
T Consensus 102 --------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~ 144 (210)
T cd03269 102 --------KE------------------------EARRRIDEWLERLELSEYANKRVE-----ELSKGNQQKVQFIAAVI 144 (210)
T ss_pred --------hH------------------------HHHHHHHHHHHHcCChHHHhCcHh-----hCCHHHHHHHHHHHHHh
Confidence 00 011235668889999877766554 59999999999999999
Q ss_pred cCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEec
Q 000872 161 GPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228 (1245)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G 228 (1245)
.+|++++|||||+|||+.++..+.+.|+++++ .+.++++++|+.+++.+++|++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELAR--AGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998865 3567888999999999999999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=324.78 Aligned_cols=185 Identities=25% Similarity=0.417 Sum_probs=159.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC-------cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++||+|++.+++.+||+||+.|+.+
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 47999999999999999999999987 99999999886431 124679999999999999999999987532
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
.. ....++++++.+||++..+..++ .||||||||+
T Consensus 103 ~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qRv 137 (352)
T PRK11144 103 KS----------------------------------------MVAQFDKIVALLGIEPLLDRYPG-----SLSGGEKQRV 137 (352)
T ss_pred hh----------------------------------------hHHHHHHHHHHcCCchhhhCCcc-----cCCHHHHHHH
Confidence 00 01124668889999877776554 5999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|+++||||||+|||+.++..+.+.|+++.+. .++++++++|+.+++..+||++++|++|+++..|+++++
T Consensus 138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE-INIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999999999998753 356788899999999999999999999999999999887
Q ss_pred H
Q 000872 234 E 234 (1245)
Q Consensus 234 ~ 234 (1245)
.
T Consensus 217 ~ 217 (352)
T PRK11144 217 W 217 (352)
T ss_pred H
Confidence 3
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=311.37 Aligned_cols=203 Identities=26% Similarity=0.330 Sum_probs=164.9
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+... ....+.+|+|||++|++||++||+|+||||||||+++|+|..++ .+|+|.+||.++.
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 5788998877411 00113599999999999999999999999999999999998654 4899999999864
Q ss_pred c-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000872 756 Q-------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGV 825 (1245)
Q Consensus 756 ~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 825 (1245)
. ..+++.+||++|++ .+++ .||.|++.|..... ..+.++.++++.++++.+||. +..+.. .
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 23466799999986 3444 69999999875432 234455667789999999996 344443 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhc
Q 000872 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAG 898 (1245)
Q Consensus 826 ~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~~ 898 (1245)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+..|+.
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri 214 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYV 214 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEE
Confidence 579999999999999999999999999999999999999999999998777999999999985 555677773
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=305.09 Aligned_cols=199 Identities=24% Similarity=0.323 Sum_probs=162.2
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEECCe
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISGY 752 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~---~~~G~i~~~g~ 752 (1245)
++++|+++.+. ++.+|+|+|+++++||++||+|+||||||||+++|+|..++. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 46778877652 235999999999999999999999999999999999986532 12799999998
Q ss_pred eCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 000872 753 PKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN----PLRQALVGLP 823 (1245)
Q Consensus 753 ~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~g~~ 823 (1245)
+... ...++.++|++|+..+++ .|++|++.+....+. .....+.++.++++++.+|+. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 234567999999988888 999999988654431 123344456788999999997 444433
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 824 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~ 212 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDR 212 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCE
Confidence 357999999999999999999999999999999999999999999999876 589999999986 45566676
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=303.60 Aligned_cols=183 Identities=32% Similarity=0.492 Sum_probs=153.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+.....+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP 103 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC
Confidence 47999999999999999999999987 999999998765432 2467999999999999999999998765432100
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
. .+..+.++++++.+||++..++.++ .||||||||++||||
T Consensus 104 ----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~a 144 (211)
T cd03264 104 ----------S------------------------KEVKARVDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQA 144 (211)
T ss_pred ----------H------------------------HHHHHHHHHHHHHCCCHHHHhCchh-----hCCHHHHHHHHHHHH
Confidence 0 0011235668888999877776654 599999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEec
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G 228 (1245)
|+.+|+++||||||+|||+.++..+.+.|++++. + +++++++|+.+++.+++|++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999864 3 67888999999999999999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=300.36 Aligned_cols=202 Identities=25% Similarity=0.388 Sum_probs=164.2
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++.+... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEc
Confidence 47889988765310 0112599999999999999999999999999999999998654 489999999876
Q ss_pred Cccc------c-cceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000872 755 NQET------F-TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 827 (1245)
Q Consensus 755 ~~~~------~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 827 (1245)
.... . ++.++|++|+..+++.+|+.|++.+....+ .....+.+++++++++.+++.+..+..+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4311 1 256899999998888899999998765433 1233444567899999999987666553 46
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 828 lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |+|||+++|++.. + +..|+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~ 215 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A-ARCDR 215 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999999998654 8999999999863 3 33554
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=310.99 Aligned_cols=201 Identities=24% Similarity=0.300 Sum_probs=166.8
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+... ..+.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 37788998876311 123599999999999999999999999999999999998654 489999999886
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 755 NQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
.. ...++.++|++|++. .++..||+|++.|..... ..+.++.+++++++++.+||.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567999999973 667789999998865432 2344555667899999999988776654 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++.. + ...|+
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dr 209 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDR 209 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999999865 8999999999863 3 45676
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=305.08 Aligned_cols=203 Identities=23% Similarity=0.254 Sum_probs=159.4
Q ss_pred EEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc
Q 000872 677 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 756 (1245)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~ 756 (1245)
+++|+++.++ ++.+|+|+|+.+++||+++|+||||||||||+++|+|.....+.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 2 KIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred eEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 4677776652 236999999999999999999999999999999999974212358999999987643
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC----CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCc
Q 000872 757 E---T-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS----EVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNG 827 (1245)
Q Consensus 757 ~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~----~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~ 827 (1245)
. . .+..++|++|++.+++.+|++|++.+........ .....+..++++++++.+|+. +..+..++ ..
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 144 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EG 144 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cC
Confidence 1 2 2334899999999999999999998764432110 112233346688999999997 34454322 24
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHH-hhh
Q 000872 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDA 897 (1245)
Q Consensus 828 lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~-fd~ 897 (1245)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+... .|+
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~ 214 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDY 214 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCe
Confidence 9999999999999999999999999999999999999999999999777899999999985 33333 465
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=312.19 Aligned_cols=204 Identities=24% Similarity=0.297 Sum_probs=164.7
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++.++.. ......+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~i~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~ 71 (305)
T PRK13651 2 QIKVKNIVKIFNKK--------LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDE 71 (305)
T ss_pred EEEEEEEEEEECCC--------CCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceec
Confidence 36788998887421 01123599999999999999999999999999999999998664 379999998653
Q ss_pred C---------------------------cccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 000872 755 N---------------------------QETFTRISGYCEQND-IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEV 806 (1245)
Q Consensus 755 ~---------------------------~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~ 806 (1245)
. ....++.+|||+|++ ..+...||+|++.|..... ....++.+++++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~ 148 (305)
T PRK13651 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKY 148 (305)
T ss_pred ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHH
Confidence 1 123456799999985 3344579999998865432 23455566778999
Q ss_pred HHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 000872 807 MELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 885 (1245)
Q Consensus 807 l~~l~l~-~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H 885 (1245)
++.+||. +..+.. ...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|
T Consensus 149 l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtH 223 (305)
T PRK13651 149 IELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223 (305)
T ss_pred HHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEee
Confidence 9999996 555544 3479999999999999999999999999999999999999999999999877999999999
Q ss_pred CCCHHHHHHhhh
Q 000872 886 QPSIDIFEAFDA 897 (1245)
Q Consensus 886 ~p~~~~~~~fd~ 897 (1245)
++. .+.+..|+
T Consensus 224 d~~-~~~~~adr 234 (305)
T PRK13651 224 DLD-NVLEWTKR 234 (305)
T ss_pred CHH-HHHHhCCE
Confidence 975 45566776
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=302.71 Aligned_cols=185 Identities=29% Similarity=0.459 Sum_probs=154.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++..|++||+.++....+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-- 102 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV-- 102 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCC--
Confidence 47899999999999999999999887 9999999988754322 35699999999888899999999886432210
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
... +..+.++++++.+||.+..+..++ .||||||||++|||||
T Consensus 103 --------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~laral 145 (213)
T cd03301 103 --------PKD------------------------EIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQRVALGRAI 145 (213)
T ss_pred --------CHH------------------------HHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHHHHHHHHH
Confidence 000 011235668889999877776655 5999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEec
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G 228 (1245)
+.+|++++|||||+|||+.++..+.+.|+++++. .++++++++|+.+++..+||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR-LGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999998753 3567788999999999999999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=321.71 Aligned_cols=191 Identities=25% Similarity=0.334 Sum_probs=160.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCc----cCCCCcc-------cceEEEeccccccCCCCCHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGH----DMHEFVP-------QRTAAYISQHDIHIGEMTVRETLA 69 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~----~~~~~~~-------~~~~~yv~Q~~~~~~~~Tv~e~l~ 69 (1245)
+++|+|+||||||||+++|+|.++|+ +|+|+++|+ ++..... ++.++||+|++.+++.+||+||+.
T Consensus 52 i~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~ 128 (382)
T TIGR03415 52 ICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVA 128 (382)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHH
Confidence 47999999999999999999999987 999999996 3322211 246999999999999999999999
Q ss_pred HHHhccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCcccccccccc
Q 000872 70 FSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQ 149 (1245)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 149 (1245)
++....+.. .. +.+..++++++.+||++..+..++ .|||||
T Consensus 129 ~~~~~~g~~----------~~------------------------~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq 169 (382)
T TIGR03415 129 FGLEMQGMP----------EA------------------------ERRKRVDEQLELVGLAQWADKKPG-----ELSGGM 169 (382)
T ss_pred HHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhcCChh-----hCCHHH
Confidence 876432210 00 011235678999999887776665 599999
Q ss_pred chhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecC
Q 000872 150 RKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 229 (1245)
Q Consensus 150 rqRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~ 229 (1245)
|||++|||||+.+|+||||||||+|||+.++.++.+.|+++.+. .++|+++++|+.+++.+++|+|++|++|+++..|+
T Consensus 170 ~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~-~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~ 248 (382)
T TIGR03415 170 QQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAK-LNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGT 248 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999998653 36778889999999999999999999999999999
Q ss_pred hhhHH
Q 000872 230 LEHVE 234 (1245)
Q Consensus 230 ~~~~~ 234 (1245)
++++.
T Consensus 249 ~~ei~ 253 (382)
T TIGR03415 249 PEEIV 253 (382)
T ss_pred HHHHh
Confidence 88764
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=319.54 Aligned_cols=188 Identities=23% Similarity=0.271 Sum_probs=160.4
Q ss_pred CcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcc---c----ccceEEEEccCCC
Q 000872 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE---T----FTRISGYCEQNDI 771 (1245)
Q Consensus 699 ~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~ 771 (1245)
+...+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.+||.++... . .++.++|++|+..
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 344689999999999999999999999999999999998654 489999999886431 1 2356899999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEE
Q 000872 772 HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 851 (1245)
Q Consensus 772 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~l 851 (1245)
+++.+||+||+.+....+. ...++.+++++++++.+||.+..+..+ +.||||||||++|||+|+.+|++|+|
T Consensus 117 l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999998765432 234455567889999999988777654 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhh
Q 000872 852 DEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 852 DEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||+|||+.++..+++.|+++.+ .|+|||+++|++. ++.+..|+
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dr 234 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDR 234 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCE
Confidence 999999999999999999999865 4899999999986 55667777
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=294.20 Aligned_cols=185 Identities=24% Similarity=0.345 Sum_probs=155.9
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
+.++|+++.+. ++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeeEEECCCccc
Confidence 46777776652 23699999999999999999999999999999999998654 4899999998764
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000872 756 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 756 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 833 (1245)
. ..+++.++|++|+..+++..||+|++.+.... . .. +..++++++.+++.+..+..+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~----~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--S----PG--AVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--C----cc--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 2 34567799999998888889999999876421 1 11 235788999999977655443 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 834 qr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
||++|||+++.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++.
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 188 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL 188 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 9999999999999999999999999999999999999998777999999999975
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=337.78 Aligned_cols=103 Identities=22% Similarity=0.344 Sum_probs=89.8
Q ss_pred HHHHcCCccc-ccccccCccccccccccchhhHHHHHHhcCC--cEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEE
Q 000872 123 ILKVLDLDVC-ADTVVGDEMLRGISGGQRKRVTTGEMLVGPA--HALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTAL 199 (1245)
Q Consensus 123 ~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~ia~al~~~p--~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~i 199 (1245)
.++.+||.+. .|..++ +|||||||||.||++|..+| ++++|||||+|||+..+..+.+.|+++++ .+.+|
T Consensus 472 ~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~--~G~TV 544 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD--LGNTL 544 (943)
T ss_pred HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh--CCCEE
Confidence 6788899764 565554 59999999999999999987 99999999999999999999999999965 36678
Q ss_pred EEecCCChhHHhhccceEEe------cCCcEEEecChhhH
Q 000872 200 ISLLQPAPEVYNLFDDIILV------SDGQIVYQGPLEHV 233 (1245)
Q Consensus 200 i~i~~~~~~~~~~~D~v~vl------~~G~iv~~G~~~~~ 233 (1245)
++++|+.+++. .||+|++| ++|++++.|+++++
T Consensus 545 IvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~ 583 (943)
T PRK00349 545 IVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEI 583 (943)
T ss_pred EEEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHH
Confidence 88999988875 69999999 89999999987654
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=303.78 Aligned_cols=197 Identities=22% Similarity=0.341 Sum_probs=161.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. .+.+|+|+|+.++|||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEec
Confidence 477888887652 23699999999999999999999999999999999998654 489999999876
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcCC
Q 000872 755 NQE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV-ELNPLRQALVGLPGVNGLS 829 (1245)
Q Consensus 755 ~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~g~~~~~~lS 829 (1245)
... ..++.++|++|+..+++.+||.|++.+..... ..++.++.++++++.+ ++.+..+.. .+.||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 432 23567999999998888899999998754211 1222334567777777 466554443 34699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||++||++|+.+|+|++|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 206 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADR 206 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCE
Confidence 99999999999999999999999999999999999999999998877999999999985 55566676
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=309.71 Aligned_cols=200 Identities=26% Similarity=0.384 Sum_probs=165.5
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
-++++|+++.+. +++.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEEC
Confidence 578999988763 123599999999999999999999999999999999998654 489999999886
Q ss_pred Cc-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000872 755 NQ-----ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 828 (1245)
Q Consensus 755 ~~-----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 828 (1245)
.. ..+++.+||++|++. .+...|++|++.+..... +.+.++..++++++++.+||.+..+..+ +.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccC
Confidence 31 235577999999864 334579999998764322 2334445567899999999988776653 469
Q ss_pred CHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 829 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 829 SgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++. +.+..|+
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~-~~~~~dr 211 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI-VPLYCDN 211 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCE
Confidence 999999999999999999999999999999999999999999999765 8999999999863 4456776
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=343.15 Aligned_cols=199 Identities=28% Similarity=0.411 Sum_probs=162.1
Q ss_pred CCeEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECC
Q 000872 672 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG 751 (1245)
Q Consensus 672 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g 751 (1245)
-...++++|++|.+.. ....+|+|+|++|+|||++||+|+||||||||+|+|+|...+ .+|+|.+||
T Consensus 468 ~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I~~dg 534 (709)
T COG2274 468 LQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRILLDG 534 (709)
T ss_pred cCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECC
Confidence 3457999999999853 223699999999999999999999999999999999998764 489999999
Q ss_pred eeCC---cccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------Cccccccccc
Q 000872 752 YPKN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE-------LNPLRQALVG 821 (1245)
Q Consensus 752 ~~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-------l~~~~~~~~g 821 (1245)
.+.+ ...+|+.+|||+|++.++. -|++||+.++. .+.+.+ .+.++.+.-| +..-.||.+|
T Consensus 535 ~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e----~i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 535 VDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDE----EIIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred EeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHH----HHHHHHHHhCcHHHHHhcccccccccc
Confidence 9864 4678899999999998875 59999997642 122222 1233333322 3334577777
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 822 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 822 ~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.. ..+||||||||++|||+|+++|+||+||||||+||+.++..|.+.|++.. +|+|+|+++|+++ .....|+
T Consensus 605 E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adr 676 (709)
T COG2274 605 EG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADR 676 (709)
T ss_pred cC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccE
Confidence 55 45799999999999999999999999999999999999999999999886 5899999999986 5667776
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=304.90 Aligned_cols=188 Identities=29% Similarity=0.451 Sum_probs=157.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++... ..++.++|++|++.+++.+|++||+.+.....+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP 106 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC
Confidence 47999999999999999999999887 99999999887432 12456999999999888999999998865432110
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
.. +....++++++.+||.+..++.++ .||||||||++||||
T Consensus 107 ----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~a 147 (220)
T cd03263 107 ----------KS------------------------EIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKRKLSLAIA 147 (220)
T ss_pred ----------HH------------------------HHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHHHHHHHH
Confidence 00 001234568888999877776655 599999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
|+.+|++++|||||+|||+.++..+.+.|+++++ + +++++++|+.+++...||++++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999998864 3 6788899999999999999999999999999987653
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-32 Score=350.57 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=91.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHh---hCCCe
Q 000872 773 SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-RQALVGLPGVNGLSTEQRKRLTIAVELV---ANPSI 848 (1245)
Q Consensus 773 ~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~lSgGerqr~~ia~~l~---~~p~i 848 (1245)
+...||.|+|.++..-........++..+++ ++++.+||.+. .+.. ...||||||||++||++|+ .+|++
T Consensus 760 ~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~L 833 (1809)
T PRK00635 760 YKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPTL 833 (1809)
T ss_pred cCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCE
Confidence 4567999999886542211112233344455 47888999875 4543 3469999999999999998 59999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 849 IFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 849 l~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
++|||||+|||..+...+++.|+++.++|.|||+++|++. .+ +..|+
T Consensus 834 LILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDr 880 (1809)
T PRK00635 834 YVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADY 880 (1809)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCE
Confidence 9999999999999999999999999888999999999986 33 77777
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=304.86 Aligned_cols=198 Identities=24% Similarity=0.304 Sum_probs=163.7
Q ss_pred EEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc
Q 000872 677 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 756 (1245)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~ 756 (1245)
+++|+++.+. .+.+|+|+|++++|||+++|+||||||||||+++|+|...+ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~ 66 (252)
T TIGR03005 2 RFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLYH 66 (252)
T ss_pred EEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 4677777652 23599999999999999999999999999999999998654 48999999987632
Q ss_pred ----------------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc
Q 000872 757 ----------------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 820 (1245)
Q Consensus 757 ----------------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 820 (1245)
..+++.++|++|+..+++..|+.|++.+..... ......+.++.++++++.+|+.+..+..+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 144 (252)
T TIGR03005 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMP 144 (252)
T ss_pred cccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcCh
Confidence 124567999999999999999999998754211 11233445567889999999987766543
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 821 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 821 g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 145 -----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~ 216 (252)
T TIGR03005 145 -----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADR 216 (252)
T ss_pred -----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCE
Confidence 469999999999999999999999999999999999999999999998764 899999999986 45566676
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=315.38 Aligned_cols=202 Identities=25% Similarity=0.372 Sum_probs=161.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC-------cccceEEEecccc--ccCCCCCHHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHD--IHIGEMTVRETLAFS 71 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~~--~~~~~~Tv~e~l~f~ 71 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++ .++ ..||.||+.|+
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~~~l~~~ 109 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF-EETVLKDVAFG 109 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc-cchHHHHHHhH
Confidence 47999999999999999999999987 99999999987421 1245799999986 444 46999999987
Q ss_pred HhccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc-ccccccccCccccccccccc
Q 000872 72 ARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQR 150 (1245)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqr 150 (1245)
....+.. .. +....+.++++.+||. +..+.. ++.||||||
T Consensus 110 ~~~~~~~----------~~------------------------~~~~~~~~~l~~~~L~~~~~~~~-----~~~LSgGqk 150 (288)
T PRK13643 110 PQNFGIP----------KE------------------------KAEKIAAEKLEMVGLADEFWEKS-----PFELSGGQM 150 (288)
T ss_pred HHHcCCC----------HH------------------------HHHHHHHHHHHHcCCChhhccCC-----cccCCHHHH
Confidence 5432110 00 0122356788889996 344544 446999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecCh
Q 000872 151 KRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230 (1245)
Q Consensus 151 qRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~ 230 (1245)
||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ .+.||++++|+.+++..+||+|++|++|+++++|++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ--SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999865 366788899999999999999999999999999999
Q ss_pred hhHH---HHHHhCCCCCCCC
Q 000872 231 EHVE---QFFISMGFKCPKR 247 (1245)
Q Consensus 231 ~~~~---~~f~~~G~~~~~~ 247 (1245)
+++. +.+...|+.+|..
T Consensus 229 ~~~~~~~~~~~~~~~~~p~~ 248 (288)
T PRK13643 229 SDVFQEVDFLKAHELGVPKA 248 (288)
T ss_pred HHHHcCHHHHHHcCCCCChH
Confidence 8863 2234455555543
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=309.94 Aligned_cols=204 Identities=25% Similarity=0.300 Sum_probs=164.1
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++.+... ....+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~--------~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPG--------TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCC--------CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 36788888766311 00124599999999999999999999999999999999998664 489999999876
Q ss_pred Cc-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000872 755 NQ-------ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGV 825 (1245)
Q Consensus 755 ~~-------~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 825 (1245)
.. ...++.++|++|++. .+..+||.|++.|....+ ....++..++++++++.+||. +..+..+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP----- 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----
Confidence 32 234567899999863 233579999998765432 223445556789999999997 5656543
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 826 ~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|++. .+.+..|+
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~ 214 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADD 214 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 469999999999999999999999999999999999999999999998777999999999976 45566676
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=304.85 Aligned_cols=206 Identities=23% Similarity=0.243 Sum_probs=163.3
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~---~~~G~i~~~g 751 (1245)
.++++|+++.+. .+.+|+|+|+++++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 467888887653 235999999999999999999999999999999999986542 2489999999
Q ss_pred eeCC-----cccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKN-----QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~-----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.++. ...+++.++|++|++.+++.+|+.|++.+....+.. ....++.++.++++++.+|+......... ....
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 148 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLN-DYPS 148 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhc-cChh
Confidence 8764 123456799999999999999999999876543311 11233444567889999998532111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~ 217 (253)
T PRK14267 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDY 217 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCE
Confidence 7999999999999999999999999999999999999999999999865 699999999986 45556676
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=277.42 Aligned_cols=198 Identities=27% Similarity=0.408 Sum_probs=162.6
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++.+|++|+.. .+.+|++||++++|||++||+|||||||||||++|+|...++ +|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~--~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC--CCeEeeCCcChh
Confidence 45678888764 346999999999999999999999999999999999987643 899999999875
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 756 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNS--KTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 756 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~--~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
. ....+..+..||+..+-...||+|-+.++.. |..... .+..+.++++|+..++.+.+... ...|||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSG 138 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGRD-----YRTLSG 138 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCc
Confidence 4 3445667889999888777899999998743 332222 24455678999999999887654 346999
Q ss_pred HHHHHHHHHHHHhh------CCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~------~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||-+||.|.. ++++||||||||.||...+..++++.|+++++|..|+++.||.+-. -..-|+
T Consensus 139 GEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLA-A~YaDr 210 (259)
T COG4559 139 GEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLA-AQYADR 210 (259)
T ss_pred hHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHH-HHhhhe
Confidence 99999999999975 4569999999999999999999999999999999999999998733 234465
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=304.63 Aligned_cols=184 Identities=30% Similarity=0.450 Sum_probs=153.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+++|+|+||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+||+||+.+.....+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~- 108 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL- 108 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCC-
Confidence 47999999999999999999999887 99999999887532 1246799999999989999999999875432210
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
... +....++++++.+||++..+..++ .||||||||++||||
T Consensus 109 ---------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~lara 150 (218)
T cd03266 109 ---------KGD------------------------ELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARA 150 (218)
T ss_pred ---------CHH------------------------HHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHHHHHHHHHH
Confidence 000 011235678889999877766554 599999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEec
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G 228 (1245)
|+.+|++++|||||+|||+.++..+.+.|+++++ .+.++++++|+.+++...+|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA--LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999864 3567888999999999999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=322.73 Aligned_cols=189 Identities=25% Similarity=0.468 Sum_probs=159.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC-------cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+||+||+.|+..
T Consensus 25 i~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 101 (354)
T TIGR02142 25 VTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK 101 (354)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence 47999999999999999999999987 99999999887432 124679999999999999999999998643
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
... .. +.+..++++++.+||++..+..+. .||||||||+
T Consensus 102 ~~~------------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGqkqRv 140 (354)
T TIGR02142 102 RAR------------PS------------------------ERRISFERVIELLGIGHLLGRLPG-----RLSGGEKQRV 140 (354)
T ss_pred ccC------------hh------------------------HHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHH
Confidence 110 00 011235678899999887776554 5999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++. .++++++++|+.+++..++|++++|++|+++..|+++++
T Consensus 141 alAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 141 AIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAE-FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998753 356788899999999999999999999999999998776
Q ss_pred H
Q 000872 234 E 234 (1245)
Q Consensus 234 ~ 234 (1245)
.
T Consensus 220 ~ 220 (354)
T TIGR02142 220 W 220 (354)
T ss_pred h
Confidence 3
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=307.83 Aligned_cols=198 Identities=27% Similarity=0.394 Sum_probs=158.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 105 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLG 105 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcc
Confidence 47999999999999999999999887 999999998875432 235699999999989999999999875321
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.. .......... + ......++++++.+||.+..++.++ .||||||||++
T Consensus 106 ~~--~~~~~~~~~~---------~---------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ 154 (241)
T cd03256 106 RR--STWRSLFGLF---------P---------------KEEKQRALAALERVGLLDKAYQRAD-----QLSGGQQQRVA 154 (241)
T ss_pred cc--hhhhhhcccC---------c---------------HHHHHHHHHHHHHcCChhhhCCCcc-----cCCHHHHHHHH
Confidence 00 0000000000 0 0011235668889999876665544 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
|||||+.+|+++||||||+|||+.++..+.+.|+++++. .+++|++++|+.+++..+||++++|++|++++.|+++++
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 155 IARALMQQPKLILADEPVASLDPASSRQVMDLLKRINRE-EGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 999999999999999999999999999999999998653 356788899999999999999999999999999988775
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=301.26 Aligned_cols=177 Identities=27% Similarity=0.393 Sum_probs=147.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccc-cCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDI-HIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~-~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+|++||+.+......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~--- 101 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD--- 101 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC---
Confidence 47999999999999999999999987 9999999988754333467999999864 3456799999987542110
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
.....++++++.+||.+..++.++ .||||||||++|||||
T Consensus 102 -----------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral 141 (205)
T cd03226 102 -----------------------------------AGNEQAETVLKDLDLYALKERHPL-----SLSGGQKQRLAIAAAL 141 (205)
T ss_pred -----------------------------------ccHHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHHHHHHHH
Confidence 001234568889999887776654 5999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEE
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIV 225 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv 225 (1245)
+.+|++++|||||+|||+.++..+.+.|+++++ .+.++++++|+.+++..+||++++|++|+++
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAA--QGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999999864 3567888999999999999999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=308.73 Aligned_cols=200 Identities=27% Similarity=0.293 Sum_probs=166.2
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
-++++|+++.+.. ..+.+|+|+|++|++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 3788898877631 123599999999999999999999999999999999998664 489999999986
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 755 NQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
.. ...++.++|++|+.. .++..||.||+.+..... ..+.++..++++++++.+||.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 53 234567999999973 666789999998865433 2234455567899999999988777654 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++.. + ...|+
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~-~~~d~ 209 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-A-AQADR 209 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-H-HcCCE
Confidence 9999999999999999999999999999999999999999999865 8999999999864 3 34676
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=319.23 Aligned_cols=188 Identities=29% Similarity=0.399 Sum_probs=158.7
Q ss_pred EeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCCccc
Q 000872 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYD 82 (1245)
Q Consensus 4 ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~~~ 82 (1245)
|+|||||||||||++|+|..+|+ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.|+.+..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~----- 72 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKV----- 72 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCC-----
Confidence 68999999999999999999987 9999999998754332 46799999999999999999999987543210
Q ss_pred hhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHHhcC
Q 000872 83 MLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGP 162 (1245)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~~~ 162 (1245)
... +.+..++++++.+||++..+..+. .||||||||++|||||+.+
T Consensus 73 -----~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qRvalaraL~~~ 118 (325)
T TIGR01187 73 -----PRA------------------------EIKPRVLEALRLVQLEEFADRKPH-----QLSGGQQQRVALARALVFK 118 (325)
T ss_pred -----CHH------------------------HHHHHHHHHHHHcCCcchhcCChh-----hCCHHHHHHHHHHHHHHhC
Confidence 000 011235678899999877765554 5999999999999999999
Q ss_pred CcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 163 AHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 163 p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
|+++||||||+|||+.++..+.+.|+++.+. .++++++++|+.+++..+||++++|++|+++..|+++++.
T Consensus 119 p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~-~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQ-LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999998753 3567788999999999999999999999999999988763
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=304.26 Aligned_cols=187 Identities=23% Similarity=0.429 Sum_probs=153.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|++||+.+......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 104 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR 104 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC
Confidence 47999999999999999999999987 9999999988754322 3569999999999999999999988643211
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHc-CCcccccccccCccccccccccchhhHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVL-DLDVCADTVVGDEMLRGISGGQRKRVTT 155 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqrqRv~i 155 (1245)
. . + ....++.+++.+ ++++..++.+. .||||||||++|
T Consensus 105 --~---------~-~------------------------~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G~~qrv~l 143 (222)
T cd03224 105 --R---------A-K------------------------RKARLERVYELFPRLKERRKQLAG-----TLSGGEQQMLAI 143 (222)
T ss_pred --c---------h-h------------------------HHHHHHHHHHHHHhhhhhhhCchh-----hCCHHHHHHHHH
Confidence 0 0 0 011123455555 46555555444 599999999999
Q ss_pred HHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 156 GEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 156 a~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
||||+.+|++++|||||+|||+.++..+.+.|++++. .++++++++|+.+++...||++++|++|++++.|+.+++
T Consensus 144 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD--EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999865 356788899999999999999999999999999987765
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=304.39 Aligned_cols=200 Identities=23% Similarity=0.281 Sum_probs=160.9
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~---~~~G~i~~~g 751 (1245)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 578899987753 235999999999999999999999999999999999976532 2489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN----PLRQALVGL 822 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~g~ 822 (1245)
.++.. ..+++.++|++|+..+++ +||+|++.+....+. .......++.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87532 234667999999987774 899999988654321 112333456678889998874 223332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 823 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 823 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ +++|||+++|++. .+-+..|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~ 218 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDR 218 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCE
Confidence 45799999999999999999999999999999999999999999999986 4799999999986 44455666
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=300.77 Aligned_cols=180 Identities=26% Similarity=0.400 Sum_probs=151.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC-cccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~-~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+||||||||||+++|+|..+|. +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-- 102 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI-- 102 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCC--
Confidence 47999999999999999999999887 99999999876432 1245699999999999999999999876432110
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
.+..++++++.+||.+..++.++ .||||||||++||||+
T Consensus 103 ------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al 141 (208)
T cd03268 103 ------------------------------------RKKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQRLGIALAL 141 (208)
T ss_pred ------------------------------------cHHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHHHHHHHHH
Confidence 01124567888899877666554 5999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEec
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G 228 (1245)
+.+|++++|||||+|||+.++..+.+.|+++++ .+.++++++|+.+++...+|++++|++|++++.|
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRD--QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998865 3567888999999999999999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=302.54 Aligned_cols=200 Identities=25% Similarity=0.302 Sum_probs=162.7
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.++ .+.+|+|+|++++|||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecC
Confidence 56777776542 23599999999999999999999999999999999998654 4899999998764
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 756 QE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-----SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 756 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.. ..++.++|++|++.+++.+||+|++.+....... .....++.+++++++++.+|+.+..+..+ +
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 31 1234699999999999999999999886432100 00112334556899999999987766543 4
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~ 211 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADK 211 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCE
Confidence 6999999999999999999999999999999999999999999999865 799999999986 45566676
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=307.68 Aligned_cols=198 Identities=23% Similarity=0.298 Sum_probs=163.4
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+. +++.+|+|+|++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECC
Confidence 45777777652 123599999999999999999999999999999999998654 4899999998864
Q ss_pred c----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 756 Q----ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 756 ~----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
. ...++.++|++|++. .+...|+.|++.+..... ..+.++.++.++++++.+|+.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999865 356689999998765432 2334445567889999999988777654 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++.. + +..|+
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~ 204 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADR 204 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCE
Confidence 99999999999999999999999999999999999999999987779999999999873 3 45666
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=297.09 Aligned_cols=181 Identities=26% Similarity=0.321 Sum_probs=151.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHHHHHHH
Q 000872 706 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-ETFTRISGYCEQNDIHSPYVTVYESLLY 784 (1245)
Q Consensus 706 ~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~ 784 (1245)
|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|+..+++.+|++|++.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 99999999999999999999999999999998654 48999999987643 2234679999999998889999999987
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHH
Q 000872 785 SAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 864 (1245)
Q Consensus 785 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~ 864 (1245)
....+. . ..++.++.++++++.+|+.+..+..+ ..||||||||++||++|+.+|++++|||||+|||..++.
T Consensus 94 ~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--K-LTAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--C-ccHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 543211 1 12234556889999999987766654 469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 865 VVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 865 ~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.+.+.|++++++ |+|||+++|++. ++-+..|+
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 198 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQR 198 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCE
Confidence 999999998754 899999999985 44455665
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=304.85 Aligned_cols=198 Identities=25% Similarity=0.355 Sum_probs=162.7
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
+.++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcc
Confidence 56788877652 23599999999999999999999999999999999998653 4899999998754
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000872 756 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 832 (1245)
Q Consensus 756 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGe 832 (1245)
. ..+++.++|++|+..+.+.+||+|++.+..... ....++.++.++++++.+|+.+..+..+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 234467899999988878899999998754321 1122333456789999999987766654 4699999
Q ss_pred HHHHHHHHHHh------hCCCeeEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHhhh
Q 000872 833 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 833 rqr~~ia~~l~------~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||+++|++. .+.+..|+
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 210 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADR 210 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCE
Confidence 99999999999 5999999999999999999999999999987 56899999999976 44556676
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=298.18 Aligned_cols=181 Identities=24% Similarity=0.360 Sum_probs=154.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 780 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 780 (1245)
+.+|+|+|+.+++||++||+||||||||||+++|+|..++ .+|+|.++|.+..... .+.++|++|++.+++.+|++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 4699999999999999999999999999999999998653 4899999998765332 246899999998888899999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCH
Q 000872 781 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 860 (1245)
Q Consensus 781 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~ 860 (1245)
++.+....+. .. ++.+.++++.+|+.+..+..+ ..||||||||++||++++.+|++++|||||+|||+
T Consensus 90 ~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 90 NLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred HHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 9987654331 11 234788899999987766543 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 861 RAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 861 ~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.++..+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~ 193 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILS-EVQQLADH 193 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCE
Confidence 9999999999998777899999999986 45566676
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=290.86 Aligned_cols=176 Identities=58% Similarity=0.928 Sum_probs=149.2
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+... ..++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 46788888876421 012469999999999999999999999999999999999743223589999999876
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000872 755 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834 (1245)
Q Consensus 755 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerq 834 (1245)
. ..+++.++|++|++.+++.+|++|++.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 5 345567899999998889999999998643110 49999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 835 r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++..++.+..|+
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~ 178 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDR 178 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCE
Confidence 999999999999999999999999999999999999998777899999999997656677776
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=303.91 Aligned_cols=203 Identities=25% Similarity=0.315 Sum_probs=160.8
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~---~~~G~i~~~g 751 (1245)
.++++|+++.+. ++.+|+|+|++|++||++||+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 578888887652 235999999999999999999999999999999999976531 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.++.. ..+++.++|++|+..+++ +|++||+.+....+ ....++.++.++++++.+|+.+....... ...+
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 153 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLK-SPAL 153 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhc-CChh
Confidence 87532 134567999999988877 89999998875432 12333445568889999988532111111 1235
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++.+..|+
T Consensus 154 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~ 222 (258)
T PRK14268 154 SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDY 222 (258)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999864 799999999976 34455565
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=311.71 Aligned_cols=214 Identities=20% Similarity=0.209 Sum_probs=168.4
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
-++++|++..+.................+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 478899988774311000000001234699999999999999999999999999999999998654 489999999986
Q ss_pred Ccc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000872 755 NQE------TFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGV 825 (1245)
Q Consensus 755 ~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 825 (1245)
... .+++.++||+|+. .++|.+||.|++.+......+ ..+.++.+++++++++.+||. +..+.. .
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 431 2456799999997 578899999999876543211 234556667788999999994 344443 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 826 ~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..||||||||++||++|+.+|++|++||||+|||..++..+++.|+++.++ |.|+|+++|++. .+.+..|+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dr 231 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDR 231 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999998764 899999999986 44455666
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=306.90 Aligned_cols=190 Identities=27% Similarity=0.416 Sum_probs=156.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+.....+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 105 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW 105 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999887 999999998765422 245789999999999999999999886432210
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcc--cccccccCccccccccccchhhHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV--CADTVVGDEMLRGISGGQRKRVTT 155 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~~t~vg~~~~~~LSGGqrqRv~i 155 (1245)
. .. +....++++++.+||++ ..+.. +++||||||||++|
T Consensus 106 ----~------~~------------------------~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~l 146 (242)
T cd03295 106 ----P------KE------------------------KIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGV 146 (242)
T ss_pred ----C------HH------------------------HHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHH
Confidence 0 00 01123456888899975 44443 44699999999999
Q ss_pred HHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 156 GEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 156 a~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
||||+.+|++++|||||+|||+.++..+.+.|+++++. .++++++++|+.+++...+|++++|++|++++.|+++++
T Consensus 147 aral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 147 ARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE-LGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999998653 356788899999999999999999999999999987765
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=313.33 Aligned_cols=190 Identities=23% Similarity=0.336 Sum_probs=156.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC-------cccceEEEeccccc-cCCCCCHHHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHDI-HIGEMTVRETLAFSA 72 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~~~-~~~~~Tv~e~l~f~~ 72 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++. .+...||+||+.|+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~ 111 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGP 111 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHH
Confidence 47999999999999999999999987 99999999987431 12357999999862 344579999999865
Q ss_pred hccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc-ccccccccCccccccccccch
Q 000872 73 RCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRK 151 (1245)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrq 151 (1245)
...+. ... +..+.++++++.+||. +..++.+. .|||||||
T Consensus 112 ~~~~~----------~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~-----~LSgGq~q 152 (290)
T PRK13634 112 MNFGV----------SEE------------------------DAKQKAREMIELVGLPEELLARSPF-----ELSGGQMR 152 (290)
T ss_pred HHcCC----------CHH------------------------HHHHHHHHHHHHCCCChhhhhCCcc-----cCCHHHHH
Confidence 32210 000 0122456788999997 45565554 59999999
Q ss_pred hhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChh
Q 000872 152 RVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231 (1245)
Q Consensus 152 Rv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~ 231 (1245)
|++|||||+.+|+++||||||+|||+.++..+.+.|++++.. .++||++++|+.+++..+||+|++|++|++++.|+++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~-~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998653 3667888999999999999999999999999999988
Q ss_pred hH
Q 000872 232 HV 233 (1245)
Q Consensus 232 ~~ 233 (1245)
++
T Consensus 232 ~~ 233 (290)
T PRK13634 232 EI 233 (290)
T ss_pred HH
Confidence 76
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=305.84 Aligned_cols=189 Identities=22% Similarity=0.367 Sum_probs=154.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCC-----CCCCceeeEEEECCccCCCCc-----ccceEEEeccccccCCCCCHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKL-----DSSLKASGKVTYNGHDMHEFV-----PQRTAAYISQHDIHIGEMTVRETLAF 70 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~-----~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~~~~~~~~Tv~e~l~f 70 (1245)
+++|+||||||||||+++|+|.+ +|. +|+|.++|+++.... .++.++|++|++.++ .+||+||+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~ 103 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAY 103 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHh
Confidence 47999999999999999999999 776 999999998875432 245799999998877 8999999988
Q ss_pred HHhccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccc
Q 000872 71 SARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQR 150 (1245)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 150 (1245)
+....+.. ... +..+.++++++.+||.+..+..+. +.+||||||
T Consensus 104 ~~~~~~~~---------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~ 147 (227)
T cd03260 104 GLRLHGIK---------LKE------------------------ELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQ 147 (227)
T ss_pred HHHhcCCC---------cHH------------------------HHHHHHHHHHHHcCCChHHhccCC---cccCCHHHH
Confidence 65322100 000 011234668888999876555430 246999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecCh
Q 000872 151 KRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230 (1245)
Q Consensus 151 qRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~ 230 (1245)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ + +++++++|+.+++...||++++|++|++++.|++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 999999999999999999999999999999999999999865 3 6788899999999999999999999999999987
Q ss_pred hh
Q 000872 231 EH 232 (1245)
Q Consensus 231 ~~ 232 (1245)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 64
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=310.40 Aligned_cols=189 Identities=23% Similarity=0.327 Sum_probs=156.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDI-HIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~~~-~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++..||+||+.|+....+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 109 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG 109 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC
Confidence 47999999999999999999999987 9999999988754322 356999999863 4567899999998643211
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
. .. .+.+..++++++.+||.+..+..+. .||||||||++||
T Consensus 110 ~----------~~------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgG~~qrv~la 150 (274)
T PRK13647 110 L----------DK------------------------DEVERRVEEALKAVRMWDFRDKPPY-----HLSYGQKKRVAIA 150 (274)
T ss_pred C----------CH------------------------HHHHHHHHHHHHHCCCHHHhcCChh-----hCCHHHHHHHHHH
Confidence 0 00 0011235678889999877776655 5999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
|||+.+|++|||||||+|||+.++..+.+.|+++++ .+.||++++|+.+++.+.||++++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN--QGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999999999875 266788899999999999999999999999999998654
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=318.72 Aligned_cols=191 Identities=24% Similarity=0.422 Sum_probs=154.7
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 2 ~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+||+|+|||||||++|+|.+..+ . +|+|.+||.++.+.. .|+.|||||||..+| +.||.+||.++..-..
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn~sas-- 453 (591)
T KOG0057|consen 381 VAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGNPSAS-- 453 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCCCCcC--
Confidence 79999999999999999999987 4 999999999986654 467899999977755 5699999998753211
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
.+.+.+.|+.. ++ .|. ...|++.++|.||+++.. |||||||||+||||
T Consensus 454 --~eeV~e~~k~a---------~~-----------------hd~---i~~l~~GY~T~VGerG~~-LSGGekQrvslaRa 501 (591)
T KOG0057|consen 454 --DEEVVEACKRA---------GL-----------------HDV---ISRLPDGYQTLVGERGLM-LSGGEKQRVSLARA 501 (591)
T ss_pred --HHHHHHHHHHc---------Cc-----------------HHH---HHhccccchhhHhhcccc-cccchHHHHHHHHH
Confidence 12222222211 11 111 234888999999998775 99999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
+++||+|+++|||||+||.+++.++++.+.+. .+++|+|+|.|+.+ ....||+|++|++|++.+.|+++++..
T Consensus 502 ~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~---~~~rTvI~IvH~l~-ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 502 FLKDAPILLLDEATSALDSETEREILDMIMDV---MSGRTVIMIVHRLD-LLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HhcCCCeEEecCcccccchhhHHHHHHHHHHh---cCCCeEEEEEecch-hHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999999999999873 34667777888875 456789999999999999999999854
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=304.39 Aligned_cols=202 Identities=22% Similarity=0.237 Sum_probs=163.3
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. ++.+|+|+|+++++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEEC
Confidence 477888887652 23699999999999999999999999999999999998654 489999999876
Q ss_pred Ccc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC----------C--CCCHHHHHHHHHHHHHHcCCcccccc
Q 000872 755 NQE---T-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS----------S--EVNSKTREMFVEEVMELVELNPLRQA 818 (1245)
Q Consensus 755 ~~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~----------~--~~~~~~~~~~v~~~l~~l~l~~~~~~ 818 (1245)
... . .+..++|++|++.+++.+||+||+.+....... . .....+..+.+++.++.+|+.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 234589999999999999999999885431110 0 00112334567888999999876665
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 819 ~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.+ +.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 43 469999999999999999999999999999999999999999999998765 899999999986 45566666
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=303.71 Aligned_cols=180 Identities=26% Similarity=0.402 Sum_probs=148.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc-------ccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV-------PQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 108 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL 108 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHh
Confidence 47999999999999999999999987 999999998875432 13569999999999999999999998654
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
..+.. .. +....++++++.+||++..+..++ .||||||||+
T Consensus 109 ~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 149 (218)
T cd03255 109 LAGVP----------KK------------------------ERRERAEELLERVGLGDRLNHYPS-----ELSGGQQQRV 149 (218)
T ss_pred hcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhcChh-----hcCHHHHHHH
Confidence 32100 00 001235668889999876665554 5999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcE
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQI 224 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~i 224 (1245)
+|||||+.+|+++||||||+|||+.++..+.+.|+++++. .++++++++|+.+++. .||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE-AGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999998652 3567888899988886 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=281.74 Aligned_cols=197 Identities=28% Similarity=0.403 Sum_probs=156.5
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|++..| +..++|++||+++++||+++|+|||||||||||++|+|..+. .+|+|.++|.+++
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecC
Confidence 5666766544 446799999999999999999999999999999999998664 3899999999976
Q ss_pred c----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCCH
Q 000872 756 Q----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE-LNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 756 ~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~g~~~~~~lSg 830 (1245)
. ...++-++||||....||.|||+|||..++..+.. ++..+..++++.+.+- |.+.++...| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 4 23456689999999999999999999987765432 1112222566666653 4455555544 5999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||.++|||||+++|++|+|||||.||-|.-..+|.++|+++.++ |.||+++-+. -....+.-|+
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn-~~~Al~iaDr 206 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQN-ARFALEIADR 206 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEecc-HHHHHHhhCE
Confidence 9999999999999999999999999999999999999999999866 6577776554 3344455565
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=303.81 Aligned_cols=205 Identities=20% Similarity=0.270 Sum_probs=162.7
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~---~~~G~i~~~g 751 (1245)
.++++|+++.+. .+.+|+|+|++++|||++||+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 367888887753 235999999999999999999999999999999999976432 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.++.. ..+++.++|++|+..+++.+||+||+.+....+. ....++.++.++++++.+|+......... ....
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLD-KPGG 147 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhh-CCcc
Confidence 87631 2345679999999989999999999987654331 11234445668889999998421111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~ 216 (258)
T PRK14241 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQ 216 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999864 689999999986 44556666
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=302.96 Aligned_cols=205 Identities=22% Similarity=0.292 Sum_probs=161.7
Q ss_pred eEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-CeeEEEEEEC
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--R-GYITGNITIS 750 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~--~-~~~~G~i~~~ 750 (1245)
..++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3588999988763 2359999999999999999999999999999999999642 1 1258999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000872 751 GYPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 825 (1245)
Q Consensus 751 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 825 (1245)
|.+... ..+++.++|++|+..+++ .||+|++.+....+. ....+..++.++++++.+|+.+....... ...
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLH-ESA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987642 134567999999988887 599999988754331 11223345667888999998542211221 124
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 826 ~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++-+..|+
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~ 217 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDV 217 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCE
Confidence 5799999999999999999999999999999999999999999999985 4799999999986 44456666
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=306.33 Aligned_cols=200 Identities=24% Similarity=0.310 Sum_probs=164.6
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++.+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Confidence 5788998876521 124699999999999999999999999999999999998654 489999999886
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 755 NQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
.. ..+++.++|++|++. .++.+|++|++.+..... ....++.++.++++++.+|+.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 235667999999964 567789999998764322 1233444567899999999988777654 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||+++|++... ...|+
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~--~~~d~ 211 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA--ILADK 211 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH--hhCCE
Confidence 9999999999999999999999999999999999999999998766 58999999998643 34565
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=300.32 Aligned_cols=188 Identities=28% Similarity=0.375 Sum_probs=156.7
Q ss_pred CcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc--ccccceEEEEc-cCCCCCCC
Q 000872 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ--ETFTRISGYCE-QNDIHSPY 775 (1245)
Q Consensus 699 ~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~ 775 (1245)
+.+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 446799999999999999999999999999999999998654 48999999986432 23456789997 55667788
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCC
Q 000872 776 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 855 (1245)
Q Consensus 776 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpT 855 (1245)
+|++|++.+....+ ....++..+.++++++.+|+.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865543 1233344556788999999988777654 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 856 SGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 856 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+|||+.++..+.+.|++++++ |+|||+++|++. ++-+..|+
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~ 223 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARR 223 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999998764 899999999986 44555665
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=323.05 Aligned_cols=193 Identities=25% Similarity=0.424 Sum_probs=160.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+++|+||||||||||||+|+|.++|. +|+|.++|+++.... .++.++||+|++.+++.+||+||+.++.....
T Consensus 31 iv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~- 106 (402)
T PRK09536 31 LVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHR- 106 (402)
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhc-
Confidence 47999999999999999999999987 999999999876533 24679999999998899999999987532110
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
..... .. .+....++++++.+||.+..++.+. .||||||||++|||
T Consensus 107 -~~~~~---~~-------------------------~~~~~~v~~~le~vgl~~~~~~~~~-----~LSgGerQRv~IAr 152 (402)
T PRK09536 107 -SRFDT---WT-------------------------ETDRAAVERAMERTGVAQFADRPVT-----SLSGGERQRVLLAR 152 (402)
T ss_pred -ccccC---CC-------------------------HHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHH
Confidence 00000 00 0012346778999999887776554 59999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
||+++|++|||||||+|||+.++..+++.|+++++ .+++|++++|+.+++.++||++++|++|++++.|+++++
T Consensus 153 AL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~--~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 153 ALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD--DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999975 356788899999999999999999999999999998875
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=304.79 Aligned_cols=201 Identities=27% Similarity=0.354 Sum_probs=163.8
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
+.++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEhH
Confidence 66788877652 24699999999999999999999999999999999997653 4899999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000872 756 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 831 (1245)
Q Consensus 756 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 831 (1245)
. ..+++.++|++|+..+++.+|+.|++.+....... .....+..++.++++++.+|+.+..++.+ +.||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHH
Confidence 2 23456689999998888889999999875311000 01112233456789999999987766653 469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 832 erqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~ 207 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDH 207 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCE
Confidence 999999999999999999999999999999999999999998777899999999986 55667776
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=305.68 Aligned_cols=202 Identities=28% Similarity=0.379 Sum_probs=164.3
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++.+. ++.+|+|+|+.+++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEeh
Confidence 578888887652 23699999999999999999999999999999999998653 489999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
.. ..+++.++|++|+..+++.+|+.|++.+....... ........+++++++++.+++.+..+..+ +.|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23456799999998888889999999875321100 01112233456889999999987666654 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++||++|+.+|++|+|||||+|||..++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~ 217 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDY 217 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998765 899999999986 55566676
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=306.54 Aligned_cols=198 Identities=26% Similarity=0.364 Sum_probs=161.1
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+. ++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcc
Confidence 46778877652 23599999999999999999999999999999999998654 4899999998863
Q ss_pred c-----ccccceEEEEccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000872 756 Q-----ETFTRISGYCEQNDIH-SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 829 (1245)
Q Consensus 756 ~-----~~~~~~~~~v~q~~~~-~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 829 (1245)
. ..+++.++|++|+... ....|+.|++.+....+ +...++..+.++++++.+|+.+..++.+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 1335678999998653 34568999998764332 2233444456788999999987766543 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+..|+
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~ 205 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDA 205 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998767899999999986 44455666
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=298.25 Aligned_cols=197 Identities=26% Similarity=0.386 Sum_probs=164.7
Q ss_pred EEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc
Q 000872 677 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 756 (1245)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~ 756 (1245)
.++|+++.+. .+.+++|+|++++|||+++|+|+||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 4667776552 23699999999999999999999999999999999998664 47999999987643
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000872 757 E-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 835 (1245)
Q Consensus 757 ~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr 835 (1245)
. ..++.++|++|+...++.+|+.|++.+....+. ......++.++++++.+|+.+..+..+ ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 1 235678999999988888999999988655432 223344556789999999987776654 4699999999
Q ss_pred HHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 836 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 836 ~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~ 200 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDR 200 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999998764 899999999985 45667776
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=316.01 Aligned_cols=193 Identities=24% Similarity=0.296 Sum_probs=158.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHD--IHIGEMTVRETLAFSA 72 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~--~~~~~~Tv~e~l~f~~ 72 (1245)
+++|+|+||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++ .+++.+||.||+.+..
T Consensus 49 ~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l 125 (331)
T PRK15079 49 TLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPL 125 (331)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHH
Confidence 47999999999999999999999987 999999999876532 235799999997 5888999999998865
Q ss_pred hccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc-ccccccccCccccccccccch
Q 000872 73 RCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRK 151 (1245)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrq 151 (1245)
..... . .... +.++.++++++.+||. +..+..+ ..|||||||
T Consensus 126 ~~~~~-~-------~~~~------------------------~~~~~~~~~l~~vgl~~~~~~~~p-----~~LSgG~~Q 168 (331)
T PRK15079 126 RTYHP-K-------LSRQ------------------------EVKDRVKAMMLKVGLLPNLINRYP-----HEFSGGQCQ 168 (331)
T ss_pred HHhcc-C-------CCHH------------------------HHHHHHHHHHHHcCCChHHhcCCc-----ccCCHHHHH
Confidence 32110 0 0000 0122356788899994 3455444 469999999
Q ss_pred hhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChh
Q 000872 152 RVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231 (1245)
Q Consensus 152 Rv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~ 231 (1245)
||+|||||+.+|++||+||||+|||+.++.++++.|+++.+. .+.++++++|+...+..+||+|++|++|++++.|+.+
T Consensus 169 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~ 247 (331)
T PRK15079 169 RIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYD 247 (331)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999998653 3678888999999999999999999999999999988
Q ss_pred hHH
Q 000872 232 HVE 234 (1245)
Q Consensus 232 ~~~ 234 (1245)
++.
T Consensus 248 ~i~ 250 (331)
T PRK15079 248 EVY 250 (331)
T ss_pred HHH
Confidence 763
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=305.73 Aligned_cols=199 Identities=24% Similarity=0.346 Sum_probs=164.3
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
+.++|+++.+. +++.+|+|+|+++++||++||+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 66788887652 123599999999999999999999999999999999998654 4899999998764
Q ss_pred c---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000872 756 Q---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 831 (1245)
Q Consensus 756 ~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 831 (1245)
. ..+++.++|++|++. .+...||.|++.+..... ....++.+++++++++.+||.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999963 334579999998765322 2334445567899999999987766654 469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 832 erqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~dr 207 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADY 207 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998765 899999999986 55667777
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=305.10 Aligned_cols=204 Identities=25% Similarity=0.323 Sum_probs=164.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eeEEEEEECCee
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYP 753 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~-~~~G~i~~~g~~ 753 (1245)
-++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 467888887652 246999999999999999999999999999999999986543 236999999987
Q ss_pred CCc--------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCcccccccc
Q 000872 754 KNQ--------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-----SEVNSKTREMFVEEVMELVELNPLRQALV 820 (1245)
Q Consensus 754 ~~~--------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 820 (1245)
... ...++.++|++|+..+++.+|+.|++.+......+ .....++.+++++++++.+|+.+..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 12345689999999888999999999875321100 01112334567899999999987766543
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 821 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 821 g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..||||||||++|||+|+.+|++|+|||||+|||..++..+.+.|++++++ |+|||+++|++. .+.+..|+
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~ 222 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCER 222 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 469999999999999999999999999999999999999999999998754 899999999986 34455565
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=299.14 Aligned_cols=183 Identities=25% Similarity=0.352 Sum_probs=152.6
Q ss_pred eeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 000872 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLL 783 (1245)
Q Consensus 704 L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~ 783 (1245)
|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+||.+..... ...+|++|+..+++.+||.|++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 5799999999999999999999999999999998654 4899999998764322 12489999999999999999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHH
Q 000872 784 YSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 863 (1245)
Q Consensus 784 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~ 863 (1245)
+......+ ....++.++.++++++.+|+.+..+..+ +.||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 76321111 2233444556889999999987766553 46999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 864 AVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 864 ~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 184 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDR 184 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999998764 899999999986 45666776
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=288.73 Aligned_cols=177 Identities=49% Similarity=0.844 Sum_probs=151.4
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CCCeeEEEEEECCe
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK--TRGYITGNITISGY 752 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~--~~~~~~G~i~~~g~ 752 (1245)
.++++|+++.++... ....+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++ .+|+|.+||.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~--~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG--VSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--CceEEEECCE
Confidence 578899988764210 001246999999999999999999999999999999999986 43 5899999999
Q ss_pred eCCcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000872 753 PKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 832 (1245)
Q Consensus 753 ~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGe 832 (1245)
+......++.++|++|++.+++.+|++|++.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8765455677999999998888999999997643110 499999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 833 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 833 rqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||++|||+|+.+|++++|||||+|||..++..+.+.|+++.++|+|||+++|++..++.+..|+
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~ 181 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDK 181 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCE
Confidence 99999999999999999999999999999999999999998777999999999998777777887
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=306.80 Aligned_cols=203 Identities=25% Similarity=0.321 Sum_probs=161.4
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++.+... ....+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~--------~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAG--------TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCC--------CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 36788888776311 00113599999999999999999999999999999999998654 489999999876
Q ss_pred Cc-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCC
Q 000872 755 NQ-------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPG 824 (1245)
Q Consensus 755 ~~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~ 824 (1245)
.. ..+++.++|++|+. .+++ .|++|++.+..... ....++..+.++++++.+||.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 142 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN----- 142 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 42 23456789999986 3444 69999998765332 1233444556788999999963 44443
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~ 214 (280)
T PRK13649 143 PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADF 214 (280)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCE
Confidence 3469999999999999999999999999999999999999999999998777899999999985 44555676
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=302.76 Aligned_cols=206 Identities=20% Similarity=0.266 Sum_probs=162.5
Q ss_pred CeEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-CeeEEEEEE
Q 000872 673 PFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--R-GYITGNITI 749 (1245)
Q Consensus 673 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~--~-~~~~G~i~~ 749 (1245)
...++++|+++.+. .+.+|+|+|++|++||++||+||||||||||+++|+|... + .+.+|+|.+
T Consensus 11 ~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~ 77 (260)
T PRK10744 11 PSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL 77 (260)
T ss_pred CceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE
Confidence 34688999988763 2359999999999999999999999999999999999754 1 135899999
Q ss_pred CCeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000872 750 SGYPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 824 (1245)
Q Consensus 750 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 824 (1245)
+|.+... ..+++.++|++|+..+++ .|++|++.+....+. ..+.++.+++++++++.+++.+....... ..
T Consensus 78 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~ 153 (260)
T PRK10744 78 DGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLH-QS 153 (260)
T ss_pred CCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHh-cC
Confidence 9987632 234567999999988777 899999987653321 12334445668899999998431111111 12
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
...||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++. +++|||+++|++. .+.+..|+
T Consensus 154 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~ 224 (260)
T PRK10744 154 GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDY 224 (260)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCE
Confidence 35799999999999999999999999999999999999999999999986 4789999999985 44556666
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=308.82 Aligned_cols=192 Identities=21% Similarity=0.371 Sum_probs=158.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||.||+.+....
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 111 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLRE 111 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999887 999999998775422 235699999999989999999999875421
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.. . . ... +....++.+++.+||.+..+..++ .||||||||++
T Consensus 112 ~~--~-~------~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~ 153 (269)
T PRK11831 112 HT--Q-L------PAP------------------------LLHSTVMMKLEAVGLRGAAKLMPS-----ELSGGMARRAA 153 (269)
T ss_pred cc--C-C------CHH------------------------HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHH
Confidence 10 0 0 000 011234567889999887776654 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
|||||+.+|+++||||||+|||+.++..+.+.|+++++. .++++++++|+.+++...||++++|++|++++.|+++++.
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998653 3567888999999999999999999999999999987763
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=300.87 Aligned_cols=204 Identities=22% Similarity=0.302 Sum_probs=160.8
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC---CCCeeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK---TRGYITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~---~~~~~~G~i~~~g 751 (1245)
.++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 467888887652 235999999999999999999999999999999999952 2212479999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.+... ..+++.++|++|+..+++ .|+.|++.+....+. ....+..++.++++++.+|+.+....... ...+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLK-ESAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcc
Confidence 87642 234567999999988776 699999987654331 11223344567899999998643211111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+..|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~ 214 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDK 214 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCE
Confidence 799999999999999999999999999999999999999999999985 5799999999987 45566777
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=314.41 Aligned_cols=188 Identities=22% Similarity=0.397 Sum_probs=153.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC-------------------cccceEEEecccc--ccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-------------------VPQRTAAYISQHD--IHI 59 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~-------------------~~~~~~~yv~Q~~--~~~ 59 (1245)
+++|+|+||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++ .++
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~ 130 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF 130 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccc
Confidence 47999999999999999999999987 99999999876432 1246799999986 345
Q ss_pred CCCCHHHHHHHHHhccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc-cccccccc
Q 000872 60 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVG 138 (1245)
Q Consensus 60 ~~~Tv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg 138 (1245)
..||+||+.|+....+. .. .+....++++++.+||+ +..+.
T Consensus 131 -~~tv~eni~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~gL~~~~~~~--- 172 (320)
T PRK13631 131 -KDTIEKDIMFGPVALGV----------KK------------------------SEAKKLAKFYLNKMGLDDSYLER--- 172 (320)
T ss_pred -cchHHHHHHhhHHhcCC----------CH------------------------HHHHHHHHHHHHHcCCChhHhcC---
Confidence 46999999886432110 00 00112356688889996 34443
Q ss_pred CccccccccccchhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEE
Q 000872 139 DEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIIL 218 (1245)
Q Consensus 139 ~~~~~~LSGGqrqRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~v 218 (1245)
.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++. .++||++++|+.+++...||++++
T Consensus 173 --~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~--~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 173 --SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA--NNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred --CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEE
Confidence 3446999999999999999999999999999999999999999999998864 366788899999999999999999
Q ss_pred ecCCcEEEecChhhH
Q 000872 219 VSDGQIVYQGPLEHV 233 (1245)
Q Consensus 219 l~~G~iv~~G~~~~~ 233 (1245)
|++|++++.|+++++
T Consensus 249 l~~G~i~~~g~~~~~ 263 (320)
T PRK13631 249 MDKGKILKTGTPYEI 263 (320)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999998876
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=302.49 Aligned_cols=186 Identities=26% Similarity=0.383 Sum_probs=152.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-------QRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+|++||+.+...
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 113 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLL 113 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHH
Confidence 47999999999999999999999887 9999999998754332 2469999999988999999999998653
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
.... ... +.+..++++++.+||++..++.++ +||||||||+
T Consensus 114 ~~~~----------~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrl 154 (233)
T PRK11629 114 IGKK----------KPA------------------------EINSRALEMLAAVGLEHRANHRPS-----ELSGGERQRV 154 (233)
T ss_pred hcCC----------CHH------------------------HHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHH
Confidence 2110 000 011235668889999876665554 5999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecCh
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~ 230 (1245)
+||||++.+|+++||||||+|||+.++..+.+.|+++++. +++++++++|+.+++.. +|++++|++|++++.|+.
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL-QGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999988643 36678889999988776 589999999999988763
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=294.77 Aligned_cols=202 Identities=22% Similarity=0.339 Sum_probs=165.6
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+.. ..+.+.+|+|+|+++++||++||+|+||||||||+++|+|..++ .+|+|.+||.+..
T Consensus 2 l~~~~l~~~~~~---------~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGH---------GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccC---------CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEhH
Confidence 567888876521 01125699999999999999999999999999999999997653 4899999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000872 756 QE------TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 829 (1245)
Q Consensus 756 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 829 (1245)
.. .+++.++|++|+..+++.+|+.|++.+...... ....++.++.++++++.+|+.+..+..+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 21 245679999999988888999999988654321 1234445567899999999987766553 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhh
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ +.+..|+
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~ 210 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADR 210 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCE
Confidence 9999999999999999999999999999999999999999999876 4899999999985 3356665
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=306.19 Aligned_cols=198 Identities=24% Similarity=0.343 Sum_probs=157.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 106 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG 106 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccc
Confidence 47999999999999999999999887 999999998875422 245699999999999999999999864311
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.. .......... ..+....++++++.+||.+..+..+. .||||||||++
T Consensus 107 ~~--~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~ 155 (243)
T TIGR02315 107 YK--PTWRSLLGRF------------------------SEEDKERALSALERVGLADKAYQRAD-----QLSGGQQQRVA 155 (243)
T ss_pred cc--cchhhhhccc------------------------cHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHH
Confidence 00 0000000000 00012235668888999876665544 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
|||||+.+|++++|||||+|||+.++..+.+.|+++++. .++++++++|+.+++.++||++++|++|++++.|+++++
T Consensus 156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999999998653 356788899999999999999999999999999987764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=298.17 Aligned_cols=186 Identities=29% Similarity=0.411 Sum_probs=157.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHH
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE-TFTRISGYCEQNDIHSPYVTVY 779 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~ 779 (1245)
+.+|+|+|+++.+||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|+..+++.+|+.
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 3699999999999999999999999999999999998654 489999999886432 2356799999999888899999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCC
Q 000872 780 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859 (1245)
Q Consensus 780 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD 859 (1245)
|++.+....+ ........+.++++++.+++.+..+... +.||||||||++||++|+.+|++++|||||+|||
T Consensus 91 enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~LD 162 (237)
T TIGR00968 91 DNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGALD 162 (237)
T ss_pred HHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9998765433 1223334456789999999987666553 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 860 ARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 860 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 163 ~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~ 200 (237)
T TIGR00968 163 AKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADR 200 (237)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCE
Confidence 99999999999998765 899999999985 45566676
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=304.95 Aligned_cols=202 Identities=23% Similarity=0.289 Sum_probs=165.4
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++++. ++.+|+|+|++++|||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEEh
Confidence 678899988763 23599999999999999999999999999999999998654 489999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
.. ..+++.++|++|+..+++..|++|++.+...-..+ .....+..++.++++++.+|+.+..+..+ +.|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCh
Confidence 42 23445789999999888889999999764211100 00111233456889999999987666543 47999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~ 213 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASH 213 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998764 899999999986 56677776
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=303.10 Aligned_cols=205 Identities=23% Similarity=0.273 Sum_probs=161.9
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR---GYITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~---~~~~G~i~~~g 751 (1245)
.+.++|+++.+. .+.+|+|+|++|+|||+++|+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 688999988763 23599999999999999999999999999999999997543 13589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.++.. ..+++.++|++|+..+++. |+.|++.+....+.. .....+.+++++++++.+|+.+....... ...+
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhh-CCcc
Confidence 87642 2345678999999887774 999999887543311 11233345567899999999642111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+-+..|+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~ 231 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQR 231 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCE
Confidence 7999999999999999999999999999999999999999999999865 789999999976 34455565
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=293.98 Aligned_cols=184 Identities=23% Similarity=0.285 Sum_probs=153.4
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHHHH
Q 000872 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-ETFTRISGYCEQNDIHSPYVTVYES 781 (1245)
Q Consensus 703 ~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~ 781 (1245)
.++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.++|++|+..+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 46799999999999999999999999999999998664 48999999987643 2345679999999998888999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHH
Q 000872 782 LLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861 (1245)
Q Consensus 782 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~ 861 (1245)
+.+....+. . ...+.+++++++++.+|+.+..+..+ +.||||||||++||++|+.+|++++|||||+|||..
T Consensus 91 ~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 976543211 1 11223456788999999987766653 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 862 AAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 862 ~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
++..+.+.|+++.++ |+|||+++|++. ++-+..|+
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~ 198 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQ 198 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCe
Confidence 999999999998764 899999999986 44455666
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=344.83 Aligned_cols=195 Identities=23% Similarity=0.353 Sum_probs=160.9
Q ss_pred eEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCee
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 753 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~ 753 (1245)
..++++|+++.+. +++++|+|+|++++|||++||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3689999986542 1246999999999999999999999999999999999986 4 38999999988
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000872 754 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 823 (1245)
Q Consensus 754 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~ 823 (1245)
.++ ..+++.++||+|++.++. -|++||+.++. ++.++ +.++++++..++.+ -.||.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 653 567889999999998886 59999998741 12222 34566666666543 347778765
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 824 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+ .+||||||||++|||||++||+||+||||||+||++++..|++.|+++. +++|+|+++|+++ ..+.+|+
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~ 552 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQ 552 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCE
Confidence 4 4699999999999999999999999999999999999999999999885 5899999999994 4466776
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=302.35 Aligned_cols=190 Identities=26% Similarity=0.395 Sum_probs=156.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc--cceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP--QRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~--~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... .+.++|++|++.+++.+|++||+.+.......
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~- 104 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGL- 104 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCC-
Confidence 47999999999999999999999987 9999999987754321 24699999999888999999999875432210
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
... +....++++++.+||++..++.++ .||||||||++||||
T Consensus 105 ---------~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~lara 146 (236)
T TIGR03864 105 ---------SRA------------------------EARERIAALLARLGLAERADDKVR-----ELNGGHRRRVEIARA 146 (236)
T ss_pred ---------CHH------------------------HHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHH
Confidence 000 001234567888999877776655 599999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
|+.+|+++||||||+|||+.++..+.+.|+++++. .++++++++|+.+++.. +|++++|++|++++.|+++++.
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRD-QGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999998653 35678889999988865 9999999999999999887664
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=276.55 Aligned_cols=192 Identities=29% Similarity=0.443 Sum_probs=158.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
|++|+||||||||||||.|+|++.|+ +|++.+||.++....+ .+.-+..||+..+-+..||+|-+.++..-...
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~ 105 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS 105 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc
Confidence 57999999999999999999999988 9999999999876654 25568999999888889999999998643321
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
+.. ..+..+++++.+...++.+.+. +....|||||||||.+||
T Consensus 106 g~~--------------------------------~~e~~~i~~~ala~~d~~~la~-----R~y~~LSGGEqQRVqlAR 148 (259)
T COG4559 106 GRE--------------------------------PEEDERIAAQALAATDLSGLAG-----RDYRTLSGGEQQRVQLAR 148 (259)
T ss_pred CCC--------------------------------chhhHHHHHHHHHHcChhhhhc-----cchhhcCchHHHHHHHHH
Confidence 110 0112334566777777776554 334569999999999999
Q ss_pred HHhc------CCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChh
Q 000872 158 MLVG------PAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231 (1245)
Q Consensus 158 al~~------~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~ 231 (1245)
.|++ ++++|+||||||+||.....+++++.+++++. +-.|+.+.|+.+.+..+||||++|++||++..|+++
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~--g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc--CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 9975 45699999999999999999999999999974 455667889999999999999999999999999998
Q ss_pred hHH
Q 000872 232 HVE 234 (1245)
Q Consensus 232 ~~~ 234 (1245)
++.
T Consensus 227 ~vl 229 (259)
T COG4559 227 DVL 229 (259)
T ss_pred Hhc
Confidence 863
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=314.08 Aligned_cols=190 Identities=24% Similarity=0.363 Sum_probs=154.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCC---------------------------CcccceEEEec
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHE---------------------------FVPQRTAAYIS 53 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~---------------------------~~~~~~~~yv~ 53 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.+... ...++.+|||+
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~ 111 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVF 111 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEe
Confidence 47999999999999999999999987 8999999875421 01245799999
Q ss_pred ccc-ccCCCCCHHHHHHHHHhccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc-c
Q 000872 54 QHD-IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-V 131 (1245)
Q Consensus 54 Q~~-~~~~~~Tv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~ 131 (1245)
|++ ..+...||+||+.|+....+. .. .+..+.++++++.+||+ +
T Consensus 112 Q~~~~~l~~~tv~e~i~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~gL~~~ 157 (305)
T PRK13651 112 QFAEYQLFEQTIEKDIIFGPVSMGV----------SK------------------------EEAKKRAAKYIELVGLDES 157 (305)
T ss_pred eCcccccccccHHHHHHhhHHHcCC----------CH------------------------HHHHHHHHHHHHHcCCChh
Confidence 985 344567999999987543211 00 00122356788999996 4
Q ss_pred cccccccCccccccccccchhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHh
Q 000872 132 CADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYN 211 (1245)
Q Consensus 132 ~~~t~vg~~~~~~LSGGqrqRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~ 211 (1245)
..+..+ ..||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++++ .+.+|++++|+.+++.+
T Consensus 158 ~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 158 YLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK--QGKTIILVTHDLDNVLE 230 (305)
T ss_pred hhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeeCHHHHHH
Confidence 555544 46999999999999999999999999999999999999999999999864 36778889999999999
Q ss_pred hccceEEecCCcEEEecChhhHH
Q 000872 212 LFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 212 ~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
.||+|++|++|++++.|+++++.
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999988763
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=302.45 Aligned_cols=208 Identities=23% Similarity=0.300 Sum_probs=163.0
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
+.++|+++.+......+ ..+.+.+|+|+|+++++||++||+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 67788887763210000 01134699999999999999999999999999999999998654 4899999998764
Q ss_pred cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000872 756 QE------TFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVN 826 (1245)
Q Consensus 756 ~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 826 (1245)
.. .+++.++|++|+. .+.+.+||+|++.+..... ......+.+++++++++.+|+. +..+.. .+
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 31 1356799999986 4567899999997654321 1122334456688999999995 555544 34
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+..|+
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~ 220 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQR 220 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcE
Confidence 69999999999999999999999999999999999999999999998765 899999999986 44556676
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=309.20 Aligned_cols=190 Identities=20% Similarity=0.328 Sum_probs=157.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEecccc-ccCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHD-IHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~-~~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++ ..++..||+||+.|+....+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG 111 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC
Confidence 47999999999999999999999987 999999999875432 235799999987 36778899999998643211
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
. ... +..+.++++++.+||++..+..++ .||||||||++||
T Consensus 112 ~----------~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qrv~lA 152 (279)
T PRK13650 112 I----------PHE------------------------EMKERVNEALELVGMQDFKEREPA-----RLSGGQKQRVAIA 152 (279)
T ss_pred C----------CHH------------------------HHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHHHHH
Confidence 0 000 011235678899999877776554 5999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
|||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++ ..||++++|++|+++..|+++++.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tilivtH~~~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD-YQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999998753 367788899999888 579999999999999999988764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=302.74 Aligned_cols=201 Identities=28% Similarity=0.391 Sum_probs=162.8
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
+.++|+++.+. ++.+|+|+|++++|||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcc
Confidence 45677776652 24699999999999999999999999999999999998654 4899999998764
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000872 756 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAW-LRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 831 (1245)
Q Consensus 756 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 831 (1245)
. ...++.++|++|+...++.+||+|++.+... .+........+..++++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 3 2334568999999877788999999987421 110001112233456889999999987766654 469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 832 erqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.++|.|||+++|+++ .+.+..|+
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 206 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDH 206 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998777899999999987 55566776
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-32 Score=301.56 Aligned_cols=207 Identities=24% Similarity=0.296 Sum_probs=165.5
Q ss_pred CCeEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEE
Q 000872 672 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR---GYITGNIT 748 (1245)
Q Consensus 672 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~---~~~~G~i~ 748 (1245)
.+..+.++|+++.++ .+.+|+|+|+++++||++||+|+||||||||+++|+|...+ .+.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 344688999988762 23699999999999999999999999999999999997642 13589999
Q ss_pred ECCeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000872 749 ISGYPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 823 (1245)
Q Consensus 749 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~ 823 (1245)
+||.+... ...++.++|++|+..+++ .||+||+.+..... .....++.+++++++++.+++.+..+...+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~- 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLHK- 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhcC-
Confidence 99987642 134567999999988777 69999998764322 1123334456688899999986432222222
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 824 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..+.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++. ++.|||+++|++. ++.+..|+
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~ 231 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDY 231 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCE
Confidence 245799999999999999999999999999999999999999999999985 4799999999987 56667776
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=304.60 Aligned_cols=189 Identities=21% Similarity=0.353 Sum_probs=156.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHhc-
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSARC- 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~- 74 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 105 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV 105 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh
Confidence 47999999999999999999999887 99999999887542 1245799999999989999999999875321
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.+. ... +..+.++++++.+||++..+..+ +.||||||||++
T Consensus 106 ~~~----------~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~ 146 (240)
T PRK09493 106 RGA----------SKE------------------------EAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVA 146 (240)
T ss_pred cCC----------CHH------------------------HHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHH
Confidence 100 000 01123466888999987666554 459999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
|||||+.+|++++|||||+|||+.++..+.+.|+++++ .++++++++|+.+++..+||++++|++|++++.|+.+++
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE--EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999999999999998864 356788899999999999999999999999999988765
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=305.98 Aligned_cols=189 Identities=21% Similarity=0.321 Sum_probs=156.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC-----------cccceEEEeccccccCCCCCHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-----------VPQRTAAYISQHDIHIGEMTVRETLA 69 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~-----------~~~~~~~yv~Q~~~~~~~~Tv~e~l~ 69 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|++||+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 107 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENII 107 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHH
Confidence 47999999999999999999999887 99999999876432 12357999999998899999999998
Q ss_pred HHHhc-cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccc
Q 000872 70 FSARC-QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGG 148 (1245)
Q Consensus 70 f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 148 (1245)
++... +.. .. .+....++++++.+||++..++.++ .||||
T Consensus 108 ~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G 148 (250)
T PRK11264 108 EGPVIVKGE----------PK------------------------EEATARARELLAKVGLAGKETSYPR-----RLSGG 148 (250)
T ss_pred HHHHHhcCC----------CH------------------------HHHHHHHHHHHHHcCCcchhhCChh-----hCChH
Confidence 75321 100 00 0011234568888999876665554 59999
Q ss_pred cchhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEec
Q 000872 149 QRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228 (1245)
Q Consensus 149 qrqRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G 228 (1245)
||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ .+.++++++|+.+++.++||++++|++|++++.|
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 226 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ--EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999998864 3567788999999999999999999999999999
Q ss_pred ChhhH
Q 000872 229 PLEHV 233 (1245)
Q Consensus 229 ~~~~~ 233 (1245)
+.+++
T Consensus 227 ~~~~~ 231 (250)
T PRK11264 227 PAKAL 231 (250)
T ss_pred CHHHH
Confidence 88765
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-32 Score=303.87 Aligned_cols=199 Identities=28% Similarity=0.346 Sum_probs=162.9
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
+.++|+++.+. +.+.+|+|+|++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECc
Confidence 46788877652 123599999999999999999999999999999999998654 4899999998863
Q ss_pred c-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000872 756 Q-----ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 829 (1245)
Q Consensus 756 ~-----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 829 (1245)
. ...++.++|++|+.. .+...||.|++.+..... ....++..+++.++++.+||.+..+..+ +.||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 124567999999863 334579999998754321 2234445567889999999988777654 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+..|+
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~ 206 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADK 206 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998777999999999976 44556676
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=301.07 Aligned_cols=189 Identities=24% Similarity=0.332 Sum_probs=154.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSR 80 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~ 80 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ..+|++|++.+++.+||+||+.+...... ..
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~-~~- 85 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVL-PD- 85 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhcc-cC-
Confidence 47999999999999999999999887 9999999988754322 24899999999999999999987532100 00
Q ss_pred cchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHHh
Q 000872 81 YDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV 160 (1245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1245)
. ... +....++++++.+||++..++.++ .||||||||++|||||+
T Consensus 86 ~------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~ 130 (230)
T TIGR01184 86 L------SKS------------------------ERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALS 130 (230)
T ss_pred C------CHH------------------------HHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHH
Confidence 0 000 011234668888999877776654 59999999999999999
Q ss_pred cCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhh
Q 000872 161 GPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEH 232 (1245)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~ 232 (1245)
.+|+++||||||+|||+.++..+.+.|+++++. .++++++++|+.+++.+.||++++|++|++++.|+..+
T Consensus 131 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 131 IRPKVLLLDEPFGALDALTRGNLQEELMQIWEE-HRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCcee
Confidence 999999999999999999999999999988653 35678889999999999999999999999998886543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=298.02 Aligned_cols=185 Identities=23% Similarity=0.372 Sum_probs=153.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++..... .
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~ 100 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--K 100 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc--C
Confidence 47999999999999999999999987 999999998875432 23579999999999999999999987532110 0
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
. .. +.+..++++++.+||++..++.+. +||||||||++|||||
T Consensus 101 -~------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ia~al 143 (211)
T cd03298 101 -L------TA-------------------------EDRQAIEVALARVGLAGLEKRLPG-----ELSGGERQRVALARVL 143 (211)
T ss_pred -c------cH-------------------------HHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHH
Confidence 0 00 001235668888999877776554 5999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEec
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G 228 (1245)
+.+|++++|||||+|||+.++..+.+.|+++++. .+.++++++|+.+++.+.||++++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE-TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998653 3567888999999999999999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=297.70 Aligned_cols=183 Identities=27% Similarity=0.437 Sum_probs=151.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC-------cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|++||+.+...
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 101 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLK 101 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHh
Confidence 47999999999999999999999987 99999999876421 124579999999998989999999987542
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
.. . ... .+..++++++.+||++..+..++ .||||||||+
T Consensus 102 ~~-----~-------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 140 (214)
T cd03297 102 RK-----R-------NRE------------------------DRISVDELLDLLGLDHLLNRYPA-----QLSGGEKQRV 140 (214)
T ss_pred hC-----C-------HHH------------------------HHHHHHHHHHHcCCHhHhhcCcc-----cCCHHHHHHH
Confidence 10 0 000 01234568888999876665544 5999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEec
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G 228 (1245)
+|||||+.+|++++|||||+|||+.++..+.+.|++++.. .++++++++|+.+++...+|++++|++|++++.|
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 141 ALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN-LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999998653 3567888999999999999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=313.27 Aligned_cols=189 Identities=22% Similarity=0.300 Sum_probs=160.8
Q ss_pred cCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCee----CCc---cc---c-cceEEEE
Q 000872 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP----KNQ---ET---F-TRISGYC 766 (1245)
Q Consensus 698 ~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~----~~~---~~---~-~~~~~~v 766 (1245)
++...+|+|+||+|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+ ... .. . ++.++|+
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 3456799999999999999999999999999999999998664 48999999963 211 11 1 2579999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCC
Q 000872 767 EQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANP 846 (1245)
Q Consensus 767 ~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p 846 (1245)
+|+..+++.+||+||+.|....+ ....++++++++++++.+||.+..+..+ ..||||||||++|||+|+.+|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999876543 2344566677899999999988777654 369999999999999999999
Q ss_pred CeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 847 SIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 847 ~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+||+|||||+|||+.++..+++.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~Dr 234 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNR 234 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999998764 899999999986 55667777
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=313.98 Aligned_cols=196 Identities=23% Similarity=0.346 Sum_probs=164.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++++++. ++.++|+|+|+++++||++||+|+||||||||++.|+|..++ .+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~-----------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~--~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPG-----------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP--QQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCC-----------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC--CCCeeeECCcCh
Confidence 6899999998864 234699999999999999999999999999999999997664 489999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCC
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA-------LVGLPG 824 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~g~~~ 824 (1245)
.. ...+..+++++|...++. -|+|+||..+. .+ ..++.+.++++.+||.+.... .+|..
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~----AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~- 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PD----ASDEELWAALQQVGLEKLLESAPDGLNTWLGEG- 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CC----CCHHHHHHHHHHcCHHHHHHhChhhhhchhccC-
Confidence 43 346678899999876664 59999997642 12 234557899999999876544 45544
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.+.||||||||++|||+|++|.++++|||||.|||+.|++++++.|.+.++ |+|+|++||+... .+.||+
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~dr 541 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDR 541 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCE
Confidence 567999999999999999999999999999999999999999999988764 8999999999763 367887
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=297.74 Aligned_cols=194 Identities=25% Similarity=0.296 Sum_probs=156.3
Q ss_pred EEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc
Q 000872 677 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 756 (1245)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~ 756 (1245)
+++|+++.++ ++.+|+|+|+++++||++||+|+||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 2 EVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDITK 66 (230)
T ss_pred EEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCC
Confidence 4667776542 23699999999999999999999999999999999998654 48999999987643
Q ss_pred c----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCCHH
Q 000872 757 E----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE-LNPLRQALVGLPGVNGLSTE 831 (1245)
Q Consensus 757 ~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~g~~~~~~lSgG 831 (1245)
. ..++.++|++|+..+++.+|+.|++.+....+. .. ..+..+++++.++ +.+..+.. .+.||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHH
Confidence 1 124568999999999999999999987654321 11 1233567777776 45544443 3469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 832 erqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++-+..|+
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 201 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADR 201 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998764 899999999985 44445665
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=299.25 Aligned_cols=204 Identities=22% Similarity=0.281 Sum_probs=159.5
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-CeeEEEEEECCeeC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR-GYITGNITISGYPK 754 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~-~~~~G~i~~~g~~~ 754 (1245)
+.++|+++.+. .+.+|+|+|++++|||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.+.
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56677777652 23599999999999999999999999999999999997532 23589999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 831 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 831 (1245)
.. ..+++.++|++|+..+++ .|++||+.+....+... ......+++++++++.+++.+....... ...+.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCHH
Confidence 43 234567999999988887 69999998865443111 1123344567889999999532111111 123579999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 832 erqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+..|+
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~ 210 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADY 210 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcE
Confidence 99999999999999999999999999999999999999999864 899999999985 34455565
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=298.35 Aligned_cols=179 Identities=28% Similarity=0.418 Sum_probs=148.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++||+.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV 106 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHH
Confidence 47999999999999999999999887 999999999875432 235799999999989999999999986532
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.+.. .. +.+..++++++.+||++..++.+. .||||||||++
T Consensus 107 ~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~ 147 (214)
T TIGR02673 107 RGKK----------ER------------------------EIQRRVGAALRQVGLEHKADAFPE-----QLSGGEQQRVA 147 (214)
T ss_pred cCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHH
Confidence 2100 00 011234668888999876665554 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCc
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQ 223 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~ 223 (1245)
|||||+.+|+++||||||+|||+.++..+.+.|+++++ .++++++++|+.+++..+||++++|++|+
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK--RGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999999864 35678889999999999999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=298.68 Aligned_cols=180 Identities=26% Similarity=0.405 Sum_probs=149.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+....
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~ 105 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV 105 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHH
Confidence 47999999999999999999999887 999999998875432 235699999999999999999999986532
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.+. . .. +....++++++.+||++..++.++ +||||||||++
T Consensus 106 ~~~-~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ 146 (214)
T cd03292 106 TGV-P---------PR------------------------EIRKRVPAALELVGLSHKHRALPA-----ELSGGEQQRVA 146 (214)
T ss_pred cCC-C---------HH------------------------HHHHHHHHHHHHcCCHHHhhCChh-----hcCHHHHHHHH
Confidence 210 0 00 011234568888999877766554 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcE
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQI 224 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~i 224 (1245)
|||||+.+|+++||||||+|||+.++..+.+.|+++++ .++++++++|+.+++.++||++++|++|++
T Consensus 147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK--AGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999864 356788899999999999999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=310.80 Aligned_cols=190 Identities=20% Similarity=0.289 Sum_probs=155.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC-------cccceEEEecccc--ccCCCCCHHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHD--IHIGEMTVRETLAFS 71 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~~--~~~~~~Tv~e~l~f~ 71 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+|||+|++ .+++ .||.||+.|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~ 110 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFG 110 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhh
Confidence 47999999999999999999999987 99999999987532 1245799999986 3444 5999999986
Q ss_pred HhccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc-ccccccccCccccccccccc
Q 000872 72 ARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQR 150 (1245)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqr 150 (1245)
....+. ... +....++++++.+||. +..++.+ +.||||||
T Consensus 111 ~~~~~~----------~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~ 151 (286)
T PRK13646 111 PKNFKM----------NLD------------------------EVKNYAHRLLMDLGFSRDVMSQSP-----FQMSGGQM 151 (286)
T ss_pred HHHcCC----------CHH------------------------HHHHHHHHHHHHcCCChhhhhCCc-----ccCCHHHH
Confidence 432110 000 0112356788899996 5566544 46999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecCh
Q 000872 151 KRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230 (1245)
Q Consensus 151 qRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~ 230 (1245)
||++|||||+.+|+++||||||+|||+.++..+.+.|+++++. .++||++++|+.+++...||++++|++|++++.|++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999998653 467888899999999999999999999999999998
Q ss_pred hhHH
Q 000872 231 EHVE 234 (1245)
Q Consensus 231 ~~~~ 234 (1245)
+++.
T Consensus 231 ~~~~ 234 (286)
T PRK13646 231 KELF 234 (286)
T ss_pred HHHH
Confidence 7753
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-31 Score=331.59 Aligned_cols=103 Identities=21% Similarity=0.323 Sum_probs=87.3
Q ss_pred HHHHcCCccc-ccccccCccccccccccchhhHHHHHHhcCC--cEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEE
Q 000872 123 ILKVLDLDVC-ADTVVGDEMLRGISGGQRKRVTTGEMLVGPA--HALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTAL 199 (1245)
Q Consensus 123 ~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~ia~al~~~p--~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~i 199 (1245)
.+..+||... .+.. +.+|||||+|||.||++|..+| +++||||||+|||+.....+.+.|+++.+ .+.+|
T Consensus 470 ~L~~vgL~~l~l~r~-----~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~--~G~TV 542 (924)
T TIGR00630 470 FLIDVGLDYLTLSRA-----AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD--LGNTV 542 (924)
T ss_pred hHhhccccccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh--CCCEE
Confidence 3677788653 4443 4469999999999999999986 89999999999999999999999999965 36677
Q ss_pred EEecCCChhHHhhccceEEe------cCCcEEEecChhhH
Q 000872 200 ISLLQPAPEVYNLFDDIILV------SDGQIVYQGPLEHV 233 (1245)
Q Consensus 200 i~i~~~~~~~~~~~D~v~vl------~~G~iv~~G~~~~~ 233 (1245)
++++|+.+++. .||+|++| ++|+|++.|+++++
T Consensus 543 IvVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 543 IVVEHDEETIR-AADYVIDIGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred EEEECCHHHHh-hCCEEEEecccccCCCCEEeeccCHHHH
Confidence 88899987765 89999999 89999999976654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-32 Score=295.70 Aligned_cols=184 Identities=30% Similarity=0.408 Sum_probs=156.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHHHH
Q 000872 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-ETFTRISGYCEQNDIHSPYVTVYES 781 (1245)
Q Consensus 703 ~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~ 781 (1245)
+|+|+|++++|||++||+|+||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|+..+++.+|+.|+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 79999999999999999999999999999999998654 48999999987653 2235679999999988989999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHH
Q 000872 782 LLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861 (1245)
Q Consensus 782 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~ 861 (1245)
+.+..... .....+.++.+.++++.+||.+..++.+ +.||||||||++||++|+++|++++|||||+|||..
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98765332 1233444556788999999988777654 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 862 AAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 862 ~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~ 199 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADK 199 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999998764 899999999985 45556676
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=298.84 Aligned_cols=205 Identities=22% Similarity=0.305 Sum_probs=162.9
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~--~~-~~~G~i~~~g 751 (1245)
.++++|+++.+. .+.+|+|+|++|+|||++||+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 477888887653 2359999999999999999999999999999999999753 21 2479999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.++.. ..+++.++|++|+..+++.+|++|++.+....+. .....+.+++++++++.+++......... ...+
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcC
Confidence 87632 2346779999999988998999999987543321 12233344567889999998642111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~ 216 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDY 216 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCE
Confidence 7999999999999999999999999999999999999999999999875 689999999986 55566676
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-32 Score=301.74 Aligned_cols=202 Identities=22% Similarity=0.294 Sum_probs=159.9
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR---GYITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~---~~~~G~i~~~g 751 (1245)
.+.++|+++.+. .+.+|+|+|++|++||++||+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 13 ~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g 79 (269)
T PRK14259 13 IISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG 79 (269)
T ss_pred eEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999987763 23599999999999999999999999999999999997542 13589999999
Q ss_pred eeCC-----cccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKN-----QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~-----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.+.. ...+++.++|++|+..+++ .||+|++.+.+..+. .. .+.++.++++++.+++..-.+.... ....
T Consensus 80 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 153 (269)
T PRK14259 80 TDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLN-ESGY 153 (269)
T ss_pred EEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhC-CCcc
Confidence 8753 1234567999999988887 499999988764431 11 2234556788888887531111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 154 ~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~ 222 (269)
T PRK14259 154 SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDM 222 (269)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCE
Confidence 7999999999999999999999999999999999999999999999854 799999999985 55566776
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=330.96 Aligned_cols=204 Identities=22% Similarity=0.296 Sum_probs=167.6
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++++. ++.+|+|+|+++++||++||+||||||||||+++|+|..++++.+|+|.++|.+.
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 377888887652 2369999999999999999999999999999999999865433589999999886
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 755 NQE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 755 ~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
... ..++.++|++|+..+++.+||+|++.+....+.......++..++++++++.+|+.+..+..+ +.|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 432 124568999999988899999999988654321111123344556899999999987776654 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~ 212 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDT 212 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999999999877999999999986 44455676
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=295.09 Aligned_cols=215 Identities=27% Similarity=0.364 Sum_probs=172.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC-C-CCceeeEEEECCccCCCCcc-------cceEEEecccc--ccCCCCCHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD-S-SLKASGKVTYNGHDMHEFVP-------QRTAAYISQHD--IHIGEMTVRETLA 69 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~-~-~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~~--~~~~~~Tv~e~l~ 69 (1245)
+.+|+|+|||||||+.++|+|+++ + ....+|+|.++|+++..... .+.|+|++|++ .+-|.+||.+.+.
T Consensus 33 ~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~ 112 (316)
T COG0444 33 ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIA 112 (316)
T ss_pred EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHH
Confidence 469999999999999999999997 4 33568999999998754432 25799999995 6788899999988
Q ss_pred HHHhccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCcccccccccc
Q 000872 70 FSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQ 149 (1245)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 149 (1245)
-..+.+.... ...++.+.+.++++.+||++... +-+....+|||||
T Consensus 113 E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSGGM 158 (316)
T COG0444 113 EVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPER--RLKSYPHELSGGM 158 (316)
T ss_pred HHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCCcH
Confidence 6654321000 01123345677899999987421 2245666899999
Q ss_pred chhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecC
Q 000872 150 RKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 229 (1245)
Q Consensus 150 rqRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~ 229 (1245)
||||.||.||+.+|++||.||||++||..++.+|++.|+++.++ .+++++.||||...+.++||||+||..|+|++.|+
T Consensus 159 rQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e-~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~ 237 (316)
T COG0444 159 RQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE-KGTALILITHDLGVVAEIADRVAVMYAGRIVEEGP 237 (316)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCC
Confidence 99999999999999999999999999999999999999999874 57889999999999999999999999999999999
Q ss_pred hhhHHHHHHhCCCCCCCCCChhhHHHHhc
Q 000872 230 LEHVEQFFISMGFKCPKRKGIADFLQEVT 258 (1245)
Q Consensus 230 ~~~~~~~f~~~G~~~~~~~~~~~~~~~~~ 258 (1245)
.+++ +..|.|......+..+-
T Consensus 238 ~~~i--------~~~P~HPYT~~Ll~s~P 258 (316)
T COG0444 238 VEEI--------FKNPKHPYTRGLLNSLP 258 (316)
T ss_pred HHHH--------hcCCCChHHHHHHHhCc
Confidence 9887 35566666655555443
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=346.62 Aligned_cols=192 Identities=26% Similarity=0.407 Sum_probs=150.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
.++|+||||||||||+++|+|.+ |. +|+|.+||.++.+... ++.++||+|++.+| +.|++|||.++..-
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF-~~TI~eNI~~g~~~--- 449 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLP-HGTLRDNVLLGNPD--- 449 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCC-CcCHHHHhhcCCCC---
Confidence 37999999999999999999999 77 9999999998876543 57899999998866 46999999985310
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
.+ ..+.++. .... ..++.+ -.|++..||.||+++. +||||||||++|||
T Consensus 450 ---~~----~eei~~a---------------l~~a------~l~~~i--~~lp~G~dT~vge~G~-~LSGGQrQRialAR 498 (588)
T PRK11174 450 ---AS----DEQLQQA---------------LENA------WVSEFL--PLLPQGLDTPIGDQAA-GLSVGQAQRLALAR 498 (588)
T ss_pred ---CC----HHHHHHH---------------HHHh------CHHHHH--HhcccccccccccCCC-CCCHHHHHHHHHHH
Confidence 00 0000000 0000 011111 2367788999998755 69999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
||+++|+|++||||||+||+.++..+.+.|+++. +++|+++++|+.+. .+.||+|++|++|++++.|+++++.+
T Consensus 499 All~~~~IliLDE~TSaLD~~te~~i~~~l~~~~---~~~TvIiItHrl~~-i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 499 ALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS---RRQTTLMVTHQLED-LAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---CCCEEEEEecChHH-HHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 9999999999999999999999999999998864 24566667787755 46699999999999999999998853
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=303.75 Aligned_cols=204 Identities=21% Similarity=0.273 Sum_probs=165.2
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
-+.++|++++++... ....+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEec
Confidence 377889988764210 00124699999999999999999999999999999999998654 489999999886
Q ss_pred Cc----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000872 755 NQ----ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 829 (1245)
Q Consensus 755 ~~----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 829 (1245)
.. ...++.+||++|++. .+...|+.|++.|..... .....+.+++++++++.+||.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 234677999999974 233468999998875432 2234455567899999999988777654 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++.. - ..|+
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~-~-~~d~ 213 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEA-V-EADR 213 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHH-h-cCCE
Confidence 99999999999999999999999999999999999999999998764 89999999999843 2 3666
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=301.17 Aligned_cols=200 Identities=26% Similarity=0.292 Sum_probs=163.9
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 4788999877631 113589999999999999999999999999999999998654 489999999876
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 755 NQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
.. ..+++.++|++|++. +++..|+.+++.+..... ....++..+.++++++.+|+.+..+..+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 43 234567999999974 677789999998764322 2233444566889999999987766543 47999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++... .. .|+
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~-~~-~d~ 211 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEA-ME-ADH 211 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHH-hc-CCE
Confidence 9999999999999999999999999999999999999999998764 89999999998643 33 565
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=297.94 Aligned_cols=194 Identities=26% Similarity=0.370 Sum_probs=158.9
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEh
Confidence 467888887652 23599999999999999999999999999999999997654 489999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCH
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLST 830 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSg 830 (1245)
.. ..+++.++|++|+..+++ .|++|++.+....+ . ..+++++++++.+|+. +..+.. ...|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 42 234567999999988776 69999997653321 1 1134578899999996 444443 346999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++||++|+.+|++|+|||||+|||..++..+.+.|++++++ |+|||+++|++. .+-+..|+
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~ 201 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDY 201 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998764 899999999986 44556666
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=282.40 Aligned_cols=192 Identities=27% Similarity=0.360 Sum_probs=165.0
Q ss_pred cCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcc----cccceEEEEccCCCCC
Q 000872 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE----TFTRISGYCEQNDIHS 773 (1245)
Q Consensus 698 ~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~ 773 (1245)
.+...+++|||+++++||++||+||||||||||+|+|+|..++ .+|+|.++|.+++.. ..+.-++--+|...++
T Consensus 14 FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 14 FGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred cCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 3556799999999999999999999999999999999998765 489999999987542 2234567889999999
Q ss_pred CCCCHHHHHHHHHHhcC--------CCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh
Q 000872 774 PYVTVYESLLYSAWLRL--------SSE-VNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVA 844 (1245)
Q Consensus 774 ~~ltv~e~l~~~~~lr~--------~~~-~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~ 844 (1245)
+.|||.||+..++..+. +.. ...++..++..++|+.+||.+.+|...| +||+||||||.|||||++
T Consensus 92 ~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~ 166 (250)
T COG0411 92 PGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALAT 166 (250)
T ss_pred CCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhc
Confidence 99999999998765442 111 1234556778999999999999998865 599999999999999999
Q ss_pred CCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 845 NPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 845 ~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+|++|+||||.+||.+.....+.+.|+++.++ |.||+++-|+.. -++...|+
T Consensus 167 ~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dr 219 (250)
T COG0411 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADR 219 (250)
T ss_pred CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccE
Confidence 99999999999999999999999999999874 699999999986 56777787
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-32 Score=309.48 Aligned_cols=190 Identities=24% Similarity=0.335 Sum_probs=155.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC-------cccceEEEeccccc-cCCCCCHHHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHDI-HIGEMTVRETLAFSA 72 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~~~-~~~~~Tv~e~l~f~~ 72 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++. .+..+||+||+.++.
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 111 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGP 111 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHH
Confidence 47999999999999999999999987 99999999887432 12356999999862 333689999998864
Q ss_pred hccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc-ccccccccCccccccccccch
Q 000872 73 RCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRK 151 (1245)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrq 151 (1245)
..... ... +....++++++.+||. +..++.++ .|||||||
T Consensus 112 ~~~~~----------~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~-----~LSgGq~q 152 (287)
T PRK13641 112 KNFGF----------SED------------------------EAKEKALKWLKKVGLSEDLISKSPF-----ELSGGQMR 152 (287)
T ss_pred HHcCC----------CHH------------------------HHHHHHHHHHHHcCCChhHhhCCcc-----cCCHHHHH
Confidence 32110 000 0112356788899996 45565554 59999999
Q ss_pred hhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChh
Q 000872 152 RVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231 (1245)
Q Consensus 152 Rv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~ 231 (1245)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .+++|++++|+.+++...||++++|++|++++.|+++
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999864 3677888999999999999999999999999999988
Q ss_pred hHH
Q 000872 232 HVE 234 (1245)
Q Consensus 232 ~~~ 234 (1245)
++.
T Consensus 231 ~~~ 233 (287)
T PRK13641 231 EIF 233 (287)
T ss_pred HHh
Confidence 753
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-32 Score=301.80 Aligned_cols=190 Identities=20% Similarity=0.379 Sum_probs=156.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV----PQRTAAYISQHDIHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+......
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 107 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD 107 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc
Confidence 47999999999999999999999887 999999998875432 23569999999998999999999987542210
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
. .... +.+..++++++.+||++..+..+ +.||||||||++||
T Consensus 108 ~---------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la 149 (241)
T PRK10895 108 D---------LSAE------------------------QREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIA 149 (241)
T ss_pred c---------cCHH------------------------HHHHHHHHHHHHcCCHHHhhcch-----hhCCHHHHHHHHHH
Confidence 0 0000 01123566888899987665544 45999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
|||+.+|+++||||||+|||+.++..+.+.++.++. .+.++++++|+.+++.+.||++++|++|++++.|+++++
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD--SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 999999999999999999999999999999998764 356788899999999999999999999999999988765
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-32 Score=302.74 Aligned_cols=180 Identities=21% Similarity=0.305 Sum_probs=151.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSR 80 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~ 80 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+||+.++.. .
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~--~---- 108 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVIDNVGLGLK--G---- 108 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHHHHHhccc--c----
Confidence 47999999999999999999999987 9999999976532 24569999999998888999999987421 0
Q ss_pred cchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHHh
Q 000872 81 YDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV 160 (1245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1245)
. ....++++++.+||.+..+..+ ..||||||||++|||||+
T Consensus 109 --------~--------------------------~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 109 --------Q--------------------------WRDAALQALAAVGLADRANEWP-----AALSGGQKQRVALARALI 149 (257)
T ss_pred --------h--------------------------HHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHh
Confidence 0 0012455788889987666554 459999999999999999
Q ss_pred cCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChh
Q 000872 161 GPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231 (1245)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~ 231 (1245)
.+|+++||||||+|||+.++..+.+.|+++.+. .+.++++++|+.+++...||++++|++|+++++|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ-HGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999988653 3567788999999999999999999999999988754
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-32 Score=302.46 Aligned_cols=186 Identities=26% Similarity=0.394 Sum_probs=153.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSR 80 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~ 80 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.. ..+.++|++|++.+++.+||+||+.+.....+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~--- 100 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGV--- 100 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCC---
Confidence 47999999999999999999999887 9999999988753 234589999999989889999999875432110
Q ss_pred cchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHHh
Q 000872 81 YDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV 160 (1245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1245)
... +....++++++.+||.+..+..++ .||||||||++|||||+
T Consensus 101 -------~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrl~laral~ 144 (255)
T PRK11248 101 -------EKM------------------------QRLEIAHQMLKKVGLEGAEKRYIW-----QLSGGQRQRVGIARALA 144 (255)
T ss_pred -------CHH------------------------HHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHHHHHHHHHh
Confidence 000 011235678889999876665544 59999999999999999
Q ss_pred cCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEec--CCcEEEecChh
Q 000872 161 GPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVS--DGQIVYQGPLE 231 (1245)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~--~G~iv~~G~~~ 231 (1245)
.+|++|||||||+|||+.++..+.+.|+++++. .++++++++|+.+++..+||++++|+ +|+++..++.+
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE-TGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999988543 35678889999999999999999998 59999888653
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=304.71 Aligned_cols=204 Identities=20% Similarity=0.288 Sum_probs=161.8
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++.+... ......+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKK--------TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCC--------CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEc
Confidence 57889998876311 00013599999999999999999999999999999999998654 489999999875
Q ss_pred Cc--------ccccceEEEEccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000872 755 NQ--------ETFTRISGYCEQNDIH-SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPG 824 (1245)
Q Consensus 755 ~~--------~~~~~~~~~v~q~~~~-~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~ 824 (1245)
.. ..+++.++|++|++.. ....|++|++.|....+ ....++..+.++++++.++|. +..+..
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 31 2345678999998632 22469999998764322 223344445678899999994 555544
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~ 220 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADE 220 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 3469999999999999999999999999999999999999999999998754 899999999986 55666776
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.4e-32 Score=301.35 Aligned_cols=203 Identities=26% Similarity=0.350 Sum_probs=161.3
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC------eeEEEEEE
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG------YITGNITI 749 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~------~~~G~i~~ 749 (1245)
++++|+++.+. ++.+|+|+|+.|++||++||+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56778876652 236999999999999999999999999999999999976532 12799999
Q ss_pred CCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000872 750 SGYPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 825 (1245)
Q Consensus 750 ~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 825 (1245)
||.+... ..+++.++|++|++..++.+|++|++.+....+.. ......+..+.++++++.+|+.+..+.. .
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987642 23455689999998766679999999875321110 0111123445688999999998766544 3
Q ss_pred CcCCHHHHHHHHHHHHHh---------hCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHh
Q 000872 826 NGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 895 (1245)
Q Consensus 826 ~~lSgGerqr~~ia~~l~---------~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~f 895 (1245)
..||||||||++||++|+ .+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|++. ++.+..
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 469999999999999999 599999999999999999999999999998765 899999999986 455667
Q ss_pred hh
Q 000872 896 DA 897 (1245)
Q Consensus 896 d~ 897 (1245)
|+
T Consensus 223 d~ 224 (272)
T PRK13547 223 DR 224 (272)
T ss_pred CE
Confidence 76
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.3e-32 Score=281.50 Aligned_cols=149 Identities=29% Similarity=0.444 Sum_probs=133.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCHH
Q 000872 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ--ETFTRISGYCEQNDIHSPYVTVY 779 (1245)
Q Consensus 702 ~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~ 779 (1245)
.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.+||.+... ..+++.++|++|+..+++..|+.
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVR 91 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHH
Confidence 599999999999999999999999999999999998654 48999999987643 23456799999999888889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCC
Q 000872 780 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859 (1245)
Q Consensus 780 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD 859 (1245)
|++. ||||||||++|||+|+.+|++++|||||+|||
T Consensus 92 ~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD 127 (173)
T cd03230 92 ENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLD 127 (173)
T ss_pred HHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 9873 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 860 ARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 860 ~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+.++..+.+.|++++++|.|+|+++|++. .+.+..|+
T Consensus 128 ~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~ 164 (173)
T cd03230 128 PESRREFWELLRELKKEGKTILLSSHILE-EAERLCDR 164 (173)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999877899999999986 44455565
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-33 Score=307.35 Aligned_cols=198 Identities=24% Similarity=0.369 Sum_probs=163.6
Q ss_pred cCCCCeEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEE
Q 000872 669 LPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNIT 748 (1245)
Q Consensus 669 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~ 748 (1245)
+......++|+|+++.++ +++++|+||||+++||+.+|++||||+||||++++|.+.-+ ..+|.|.
T Consensus 531 l~~~~G~i~fsnvtF~Y~------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~ 596 (790)
T KOG0056|consen 531 LKVTQGKIEFSNVTFAYD------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSIT 596 (790)
T ss_pred ccccCCeEEEEEeEEecC------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEE
Confidence 334556899999999885 34689999999999999999999999999999999998644 3489999
Q ss_pred ECCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH--HHHH-HHHcCCcccccccccC
Q 000872 749 ISGYPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMF--VEEV-MELVELNPLRQALVGL 822 (1245)
Q Consensus 749 ~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~--v~~~-l~~l~l~~~~~~~~g~ 822 (1245)
|||++++. ..+|+.+|.||||..++. -|+..|+.|+- | +.+.++..+. ...+ -+.++..+-.+|.+|.
T Consensus 597 iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGE 670 (790)
T KOG0056|consen 597 IDGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGE 670 (790)
T ss_pred EcCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhh
Confidence 99998753 567888999999988875 58888888752 1 2233332211 1111 1347788888999998
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 823 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 823 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
.+.+ |||||||||+|||+++++|.|++|||+||.||..+++.|+..|.++++ ++|.|+++|+.|
T Consensus 671 RGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLS 734 (790)
T KOG0056|consen 671 RGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLS 734 (790)
T ss_pred cccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeeh
Confidence 7766 999999999999999999999999999999999999999999999984 899999999987
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=305.86 Aligned_cols=205 Identities=20% Similarity=0.259 Sum_probs=163.8
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR---GYITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~---~~~~G~i~~~g 751 (1245)
.+.++|+++.+.. +.+.+|+|+|++|++||++||+||||||||||+++|+|.... .+.+|+|.+||
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 5889999987741 123599999999999999999999999999999999997542 13489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVN-SKTREMFVEEVMELVELNPLRQALVGLPGV 825 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~-~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 825 (1245)
.++.. ..+++.++|++|++.+++ .|++||+.|..... ... .+..++.++++++.++|.+-.++.++.. .
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~-~ 223 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKA-G 223 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-c
Confidence 98742 245678999999988775 79999998864321 122 2223445778888888854333444433 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 826 ~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Dr 293 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDE 293 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 57999999999999999999999999999999999999999999999875 799999999985 44455676
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=305.45 Aligned_cols=208 Identities=19% Similarity=0.232 Sum_probs=164.4
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-C-eeEEEEEECCee
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR-G-YITGNITISGYP 753 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~-~-~~~G~i~~~g~~ 753 (1245)
++++|+++.+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++ + ..+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 6788888776421 1124699999999999999999999999999999999997642 2 358999999998
Q ss_pred CCcc---c----ccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000872 754 KNQE---T----FTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 824 (1245)
Q Consensus 754 ~~~~---~----~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 824 (1245)
+... . +++.++|++|+. .+.|.+|+.+++........ ....++.++++.++++.+||.+..+.. . ..
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l-~-~~ 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRL-D-VY 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHH-h-CC
Confidence 6431 1 224689999997 47788999988865543321 234455667789999999997532211 1 12
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
...||||||||++||+||+.+|++|++||||+|||..++..+++.|+++.+ .|.|+|+++|+.+ .+.+..|+
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adr 223 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHK 223 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 457999999999999999999999999999999999999999999999976 4899999999986 44556676
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-32 Score=311.48 Aligned_cols=198 Identities=23% Similarity=0.278 Sum_probs=160.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-------cceEEEecccc--ccCCCCCHHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-------QRTAAYISQHD--IHIGEMTVRETLAFS 71 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~~--~~~~~~Tv~e~l~f~ 71 (1245)
+++|+|+||||||||+++|+|.++|....+|+|.++|+++..... ++.++||+|++ .+.+.+|+.+++.+.
T Consensus 44 ~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~ 123 (330)
T PRK09473 44 TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEV 123 (330)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHH
Confidence 479999999999999999999998742348999999998765432 14699999997 688999999999865
Q ss_pred HhccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccch
Q 000872 72 ARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRK 151 (1245)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 151 (1245)
...... ... .+....+.++++.+||++..+. . ++.+++|||||||
T Consensus 124 ~~~~~~---------~~~------------------------~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG~~Q 168 (330)
T PRK09473 124 LMLHKG---------MSK------------------------AEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGGMRQ 168 (330)
T ss_pred HHHhcC---------CCH------------------------HHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHHHHH
Confidence 432210 000 0112235667888999764322 2 2456679999999
Q ss_pred hhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChh
Q 000872 152 RVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231 (1245)
Q Consensus 152 Rv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~ 231 (1245)
|++|||||+.+|++||+||||+|||+.++.++.+.|+++.+. .++++++++|+...+..++|+|++|++|++++.|+.+
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~ 247 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNAR 247 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998764 3678888999999999999999999999999999988
Q ss_pred hHH
Q 000872 232 HVE 234 (1245)
Q Consensus 232 ~~~ 234 (1245)
++.
T Consensus 248 ~i~ 250 (330)
T PRK09473 248 DVF 250 (330)
T ss_pred HHH
Confidence 874
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-32 Score=299.07 Aligned_cols=191 Identities=24% Similarity=0.397 Sum_probs=158.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+||||||||||+++|+|..+|. +|+|.++|+++..... ++.++|++|++.+++.+|++||+.+..... . .
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~-~ 101 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG-L-K 101 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc-c-C
Confidence 47999999999999999999999987 9999999988754322 356999999999999999999998642110 0 0
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
. .. .....++++++.+||++..++.+. .||||||||++||||+
T Consensus 102 -~------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral 144 (232)
T PRK10771 102 -L------NA-------------------------AQREKLHAIARQMGIEDLLARLPG-----QLSGGQRQRVALARCL 144 (232)
T ss_pred -C------CH-------------------------HHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHHHHHHHHHH
Confidence 0 00 001235668889999877776665 5999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
+.+|+++||||||+|||+.++..+.+.|+++++. .++++++++|+.+++.+.+|++++|++|++++.|+.+++.
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQE-RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999988653 3567788999999999999999999999999999987764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=302.84 Aligned_cols=202 Identities=25% Similarity=0.275 Sum_probs=165.7
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCe-eEEEEEECCee
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-ITGNITISGYP 753 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~-~~G~i~~~g~~ 753 (1245)
.++++|+++.++. ..+.+|+|+|++|++||++||+||||||||||+++|+|..++.. .+|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4788898877531 12359999999999999999999999999999999999865431 23999999998
Q ss_pred CCc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000872 754 KNQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 829 (1245)
Q Consensus 754 ~~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 829 (1245)
... ...++.+||++|+.. .++..||.|++.|....+ ..+.++.+++++++++.+||.+..+..+ +.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 653 234567899999974 567789999998764322 2344555667899999999988766653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||++||++|+.+|++|+|||||+|||..++..+.+.|++++++ |+|||+++|+++. + ...|+
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~ 212 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQ 212 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCE
Confidence 99999999999999999999999999999999999999999998764 8999999999874 3 45676
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=298.00 Aligned_cols=204 Identities=21% Similarity=0.270 Sum_probs=159.6
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eeEEEEEECCe
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISGY 752 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~--~~-~~~G~i~~~g~ 752 (1245)
-+++|+++.+. .+.+|+|+|++++|||+++|+|+||||||||+++|+|... +. +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 35677776542 2369999999999999999999999999999999999754 11 35899999998
Q ss_pred eCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000872 753 PKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 827 (1245)
Q Consensus 753 ~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 827 (1245)
++.. ..+++.++|++|+..+++. |+.|++.+....+. .....++.++.++++++.+|+.+...+.... ....
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-Chhh
Confidence 7532 1346679999999888775 99999987643331 1112233445678899999986532111211 2357
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 828 lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||||++|||+|+++|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+..|+
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~ 217 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDR 217 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCE
Confidence 99999999999999999999999999999999999999999999985 4899999999986 55566676
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=294.94 Aligned_cols=196 Identities=22% Similarity=0.260 Sum_probs=160.1
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+.. ...|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~---------------~~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH---------------LPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC---------------ccceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeecC
Confidence 467888877631 12389999999999999999999999999999998654 4899999998764
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000872 756 QE-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834 (1245)
Q Consensus 756 ~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerq 834 (1245)
.. ..++.++|++|++.+++.+|+.|++.+..... .. ..+..+++++++++.+|+.+..+..+ +.|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LK-LNAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cC-CCHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 31 23457899999999999999999997653211 11 12234566899999999988777664 469999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 835 r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|++||++++.+|++++|||||+|||..++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 199 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPR 199 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999998754 899999999986 44556666
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-32 Score=298.05 Aligned_cols=191 Identities=24% Similarity=0.306 Sum_probs=154.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCC----CCceeeEEEECCccCCCCcc-cceEEEeccccc--cCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDS----SLKASGKVTYNGHDMHEFVP-QRTAAYISQHDI--HIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~----~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~--~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+.+|+.||+.+...
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 90 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLR 90 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHH
Confidence 4799999999999999999999987 6 9999999988754322 257999999974 5567899999987543
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcc---cccccccCccccccccccc
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV---CADTVVGDEMLRGISGGQR 150 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~~t~vg~~~~~~LSGGqr 150 (1245)
..+.. .. +....++++++.+||++ ..+.. +..||||||
T Consensus 91 ~~~~~---------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~ 131 (230)
T TIGR02770 91 SLGKL---------SK-------------------------QARALILEALEAVGLPDPEEVLKKY-----PFQLSGGML 131 (230)
T ss_pred HcCcc---------HH-------------------------HHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHH
Confidence 21100 00 01123566888899973 33443 446999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecCh
Q 000872 151 KRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230 (1245)
Q Consensus 151 qRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~ 230 (1245)
||++|||||+.+|++++|||||+|||+.+...+.+.|+++++. .+++|++++|+.+++...+|++++|++|+++..|++
T Consensus 132 qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 210 (230)
T TIGR02770 132 QRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL-FGTGILLITHDLGVVARIADEVAVMDDGRIVERGTV 210 (230)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988653 356788899999999999999999999999999998
Q ss_pred hhHH
Q 000872 231 EHVE 234 (1245)
Q Consensus 231 ~~~~ 234 (1245)
+++.
T Consensus 211 ~~~~ 214 (230)
T TIGR02770 211 KEIF 214 (230)
T ss_pred HHHH
Confidence 7763
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=305.41 Aligned_cols=209 Identities=21% Similarity=0.292 Sum_probs=167.2
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eeEEEEEECCee
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYP 753 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~-~~~G~i~~~g~~ 753 (1245)
-++++|++..+... .+...+|+|||++|++||++||+|+||||||||+++|+|..++. ..+|+|.+||.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 47889998776421 12246999999999999999999999999999999999986542 138999999998
Q ss_pred CCc---cc---c-cceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000872 754 KNQ---ET---F-TRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 824 (1245)
Q Consensus 754 ~~~---~~---~-~~~~~~v~q~~--~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 824 (1245)
+.. .. + ++.++||+|+. .+.|.+|+.+++........ ....++..+++.++++.+||.+..+. .+ ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-MK-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-hc-CC
Confidence 643 11 1 24799999997 67889999999876554332 23445556678899999999754322 12 23
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
...||||||||++||++|+.+|++|++||||+|||..++..+++.|+++.++ |.|+|+++|++. .+.+..|+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dr 231 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDK 231 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCE
Confidence 4679999999999999999999999999999999999999999999999765 899999999986 44556677
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-32 Score=297.79 Aligned_cols=181 Identities=23% Similarity=0.368 Sum_probs=147.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-------QRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.+|++||+.+...
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 109 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL 109 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHH
Confidence 47999999999999999999999987 9999999988754321 1469999999988889999999988643
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
.... . .. +....++++++.+||++..+..++ .||||||||+
T Consensus 110 ~~~~----~------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 150 (221)
T TIGR02211 110 IGKK----S------VK------------------------EAKERAYEMLEKVGLEHRINHRPS-----ELSGGERQRV 150 (221)
T ss_pred hcCC----C------HH------------------------HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHH
Confidence 2110 0 00 001234568888999876665554 5999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEE
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIV 225 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv 225 (1245)
+|||||+.+|+++||||||+|||+.++..+.+.|+++++. .+.++++++|+.+++.. +|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE-LNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 9999999999999999999999999999999999988653 35677788999887754 7999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=304.52 Aligned_cols=210 Identities=23% Similarity=0.252 Sum_probs=167.2
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
-++.+|+++.+...... . ...+...+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~--~-~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGL--F-KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCc--c-ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 47889998877421100 0 001124699999999999999999999999999999999998654 489999999886
Q ss_pred Ccc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000872 755 NQE------TFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGV 825 (1245)
Q Consensus 755 ~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~ 825 (1245)
... .+++.++||+|+. .+.|.+|+.+++....... .....++..+++.++++.+||.+ ..+.. .
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 431 3456799999997 5788899999987654332 12345556678899999999963 44443 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 826 ~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..||||||||++|||||+.+|++|++||||+|||..++..+++.|+++.++ |.|||++||+.+ .+.+..|+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adr 224 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADE 224 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999998764 899999999976 44445666
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=297.00 Aligned_cols=204 Identities=22% Similarity=0.303 Sum_probs=160.1
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~---~~~G~i~~~g 751 (1245)
.+.++|+++.+. .+.+|+|+|+++++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 367888887652 235999999999999999999999999999999999964321 2489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.+... ...++.++|++|+..+++ .|++|++.+....+. ....++.++.++++++.+++.+....... ....
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 145 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLK-KSAL 145 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHh-cCCC
Confidence 87642 234567899999988777 899999988654331 11233445667888888887531111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|++. .+.+..|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~ 214 (250)
T PRK14240 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDK 214 (250)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCE
Confidence 799999999999999999999999999999999999999999999985 4799999999975 45556666
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-32 Score=298.84 Aligned_cols=187 Identities=26% Similarity=0.359 Sum_probs=152.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+||||||||||+++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.+|++||+.++.....
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP 104 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC
Confidence 47999999999999999999999987 9999999988754322 3569999999999999999999988653211
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcC-CcccccccccCccccccccccchhhHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLD-LDVCADTVVGDEMLRGISGGQRKRVTT 155 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrqRv~i 155 (1245)
. .. ....+++++.++ +.+..++.+ +.||||||||++|
T Consensus 105 ~----------~~---------------------------~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~l 142 (230)
T TIGR03410 105 R----------RS---------------------------RKIPDEIYELFPVLKEMLGRRG-----GDLSGGQQQQLAI 142 (230)
T ss_pred c----------ch---------------------------HHHHHHHHHHHHhHHHHhhCCh-----hhCCHHHHHHHHH
Confidence 0 00 011233455554 444444444 4699999999999
Q ss_pred HHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 156 GEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 156 a~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
||||+.+|++++|||||+|||+.++.++.+.|+++++. .++++++++|+.+++...||++++|++|++++.|+.+++
T Consensus 143 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999999999988653 366788899999999999999999999999999998765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=298.56 Aligned_cols=204 Identities=22% Similarity=0.281 Sum_probs=161.2
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~--~~-~~~G~i~~~g 751 (1245)
.+.++|+++.+. .+.+|+|+|++|++||++||+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 478899987652 2359999999999999999999999999999999999754 21 1489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.+... ..+++.++|++|+..+++. |++|++.+....+. ....++.+++++++++.+++.+....... ...+
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLH-TQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcc
Confidence 87632 2345679999999888875 99999987643321 11233445567888999998642111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. .+.+..|+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~ 223 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQ 223 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999864 799999999986 55566676
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=297.51 Aligned_cols=204 Identities=27% Similarity=0.333 Sum_probs=160.2
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~--~~-~~~G~i~~~g 751 (1245)
.+.++|+++.+. ++.+|+|+|+++++||++||+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 477888887653 2359999999999999999999999999999999999632 21 2479999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.+... ..+++.++|++|+..+++ .|++|++.+....+. ....+..++.++++++.+++.+....... ...+
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLH-DSAL 147 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHh-cCcc
Confidence 87632 234567999999988777 899999987654321 11223344567888999987532111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~ 216 (252)
T PRK14239 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDR 216 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999864 699999999986 55666776
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-32 Score=309.93 Aligned_cols=192 Identities=20% Similarity=0.238 Sum_probs=159.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHD--IHIGEMTVRETLAFSA 72 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~--~~~~~~Tv~e~l~f~~ 72 (1245)
+++|+|+||||||||+++|+|.++|. +|+|.++|+++.... .++.++||+|++ .+.+.+||.+++....
T Consensus 43 ~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~ 119 (327)
T PRK11308 43 TLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPL 119 (327)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHH
Confidence 47999999999999999999999887 999999999875532 235799999997 5888899999998654
Q ss_pred hccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcc-cccccccCccccccccccch
Q 000872 73 RCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV-CADTVVGDEMLRGISGGQRK 151 (1245)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrq 151 (1245)
..... .... +....++++++.+||.+ ..+..+ ..|||||||
T Consensus 120 ~~~~~---------~~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~p-----~~LSgGq~Q 161 (327)
T PRK11308 120 LINTS---------LSAA------------------------ERREKALAMMAKVGLRPEHYDRYP-----HMFSGGQRQ 161 (327)
T ss_pred HHccC---------CCHH------------------------HHHHHHHHHHHHCCCChHHhcCCC-----ccCCHHHHH
Confidence 32210 0000 01234567899999963 555544 469999999
Q ss_pred hhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChh
Q 000872 152 RVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231 (1245)
Q Consensus 152 Rv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~ 231 (1245)
|++|||||+.+|++||+||||++||..++.++++.|+++.+. .++++++++|+...+..+||+|++|++|++++.|+.+
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~ 240 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKE 240 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998764 3677888999999999999999999999999999988
Q ss_pred hHH
Q 000872 232 HVE 234 (1245)
Q Consensus 232 ~~~ 234 (1245)
++.
T Consensus 241 ~~~ 243 (327)
T PRK11308 241 QIF 243 (327)
T ss_pred HHh
Confidence 774
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-31 Score=284.60 Aligned_cols=183 Identities=20% Similarity=0.300 Sum_probs=151.7
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
+.++|+++++. ++.+++ +|++++|||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP--SSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCcccC
Confidence 46778877652 124555 9999999999999999999999999999998654 4899999998764
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000872 756 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 835 (1245)
Q Consensus 756 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr 835 (1245)
... ++.++|++|+...++..||+|++.+...... .++.++++++.+++.+..+.. .+.||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~--------~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIYN--------SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhcc--------cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHH
Confidence 322 3458999998877788999999987543221 133567888999998766654 34699999999
Q ss_pred HHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 836 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 836 ~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
++||++++.+|++++|||||+|||+.++..+.+.|++..++|+|||+++|++.
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999877667899999999976
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-32 Score=306.44 Aligned_cols=190 Identities=25% Similarity=0.363 Sum_probs=157.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDI-HIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~-~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. +++..||+||+.++....+
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~ 111 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG 111 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC
Confidence 47999999999999999999999987 999999999875432 2457999999973 6778899999988643221
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
. ... +..+.++++++.+||.+..++.++ .||||||||++||
T Consensus 112 ~----------~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrv~la 152 (279)
T PRK13635 112 V----------PRE------------------------EMVERVDQALRQVGMEDFLNREPH-----RLSGGQKQRVAIA 152 (279)
T ss_pred C----------CHH------------------------HHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHH
Confidence 0 000 011235678889999887776665 5999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
|||+.+|+++||||||+|||+.++..+.+.|+++++. .+++|++++|+.+++. .||++++|++|++++.|+.+++.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ-KGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999998753 3677888999988886 59999999999999999987764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=296.84 Aligned_cols=203 Identities=21% Similarity=0.300 Sum_probs=160.6
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEECCe
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISGY 752 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~---~~~G~i~~~g~ 752 (1245)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+. +.+|+|.+||.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 67888887652 235999999999999999999999999999999999975421 25899999998
Q ss_pred eCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000872 753 PKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 827 (1245)
Q Consensus 753 ~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 827 (1245)
+... ...++.++|++|++.+++ .|++|++.+...... ....+..++.+++.++.+|+.+..+... +.....
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhh
Confidence 7642 234567999999988887 899999987654321 1122334456788899998864211111 122457
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 828 lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++.+ ++|||+++|++. .+.+..|+
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~ 214 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADY 214 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999865 799999999986 45566676
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-32 Score=300.51 Aligned_cols=187 Identities=23% Similarity=0.404 Sum_probs=151.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV----PQRTAAYISQHDIHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++....
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~- 108 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA- 108 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-
Confidence 47999999999999999999999987 999999998875432 2356999999999899999999998753211
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHc-CCcccccccccCccccccccccchhhHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVL-DLDVCADTVVGDEMLRGISGGQRKRVTT 155 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqrqRv~i 155 (1245)
.. .+ ....++.+++.+ ++.+..++.+ ..||||||||++|
T Consensus 109 --~~---------~~------------------------~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrl~l 148 (237)
T PRK11614 109 --ER---------DQ------------------------FQERIKWVYELFPRLHERRIQRA-----GTMSGGEQQMLAI 148 (237)
T ss_pred --Ch---------hH------------------------HHHHHHHHHHHHHHHHHHHhCch-----hhCCHHHHHHHHH
Confidence 00 00 001123344555 3554444433 4599999999999
Q ss_pred HHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 156 GEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 156 a~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
||||+.+|++++|||||+|||+.++..+.+.|+++++ .++++++++|+.+++.+.||++++|++|++++.|+++++
T Consensus 149 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE--QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred HHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999999999999999999999999998865 356777789999999999999999999999999998776
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-32 Score=261.38 Aligned_cols=181 Identities=28% Similarity=0.403 Sum_probs=155.9
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-------cceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-------QRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 2 ~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
++|+|||||||||||-+++|+-.|+ +|+|.+.|+++....- .+.+|+|+|...++|++|..||+...+.+
T Consensus 39 vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL 115 (228)
T COG4181 39 VAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLEL 115 (228)
T ss_pred EEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhh
Confidence 6999999999999999999999988 9999999999865532 36899999999999999999999988777
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
++...+ +........++.+||.+..+.+.+ +|||||+|||+
T Consensus 116 ~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl~HyP~-----qLSGGEQQRVA 156 (228)
T COG4181 116 RGESSA----------------------------------DSRAGAKALLEAVGLGKRLTHYPA-----QLSGGEQQRVA 156 (228)
T ss_pred cCCccc----------------------------------cHHHHHHHHHHHhCcccccccCcc-----ccCchHHHHHH
Confidence 652111 112234568899999998876665 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEE
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVY 226 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~ 226 (1245)
||||+...|+|||-||||-.||..+..+|.+.|..+.+. .++|++++||+. .+...|||.+-|.+|+++.
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre-~G~TlVlVTHD~-~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE-RGTTLVLVTHDP-QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh-cCceEEEEeCCH-HHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999998775 688889899986 5667899999999999874
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=292.53 Aligned_cols=195 Identities=23% Similarity=0.361 Sum_probs=158.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++.+. ++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEc
Confidence 477888887652 23599999999999999999999999999999999997653 489999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCH
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLST 830 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSg 830 (1245)
.. ..+++.++|++|+..+++ .|++|++.+....+.. . ..++.++++++.+|+. ...+.. .+.|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 42 234567899999988776 5999999875443311 1 1234568899999995 344443 346999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.++ |+|||+++|++.. + +..|+
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~ 206 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADK 206 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999998754 8999999999863 2 33554
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-32 Score=338.12 Aligned_cols=200 Identities=31% Similarity=0.443 Sum_probs=163.0
Q ss_pred CCeEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECC
Q 000872 672 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG 751 (1245)
Q Consensus 672 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g 751 (1245)
....++|+|++++|+.. ++..+|+|+|+.|++||.+||+|||||||||++++|.|..++ .+|+|.+||
T Consensus 347 ~~g~ief~nV~FsYPsR----------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP--~~G~V~idG 414 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSR----------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP--TSGEVLIDG 414 (1228)
T ss_pred cccceEEEEEEecCCCC----------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCceEEEcC
Confidence 34579999999998643 234699999999999999999999999999999999997654 589999999
Q ss_pred eeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH-------HcCCccccccccc
Q 000872 752 YPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVME-------LVELNPLRQALVG 821 (1245)
Q Consensus 752 ~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~-------~l~l~~~~~~~~g 821 (1245)
.++.. +.+|..+|.|.|++.++. .|++||+.|+- .+.+.++ ++++.+ ...|.+-.||.+|
T Consensus 415 ~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~-----~dat~~~----i~~a~k~ana~~fi~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGK-----PDATREE----IEEAAKAANAHDFILKLPDGYDTLVG 484 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCC-----CcccHHH----HHHHHHHccHHHHHHhhHHhhccccc
Confidence 88654 456788999999997764 79999998752 2223322 222222 2345566788998
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 822 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 822 ~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..+.. ||||||||++|||||++||+||+||||||+||++++..++++|++.. +|+|.|+++|+.| .|=+ -|+
T Consensus 485 e~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tIrn-aD~ 556 (1228)
T KOG0055|consen 485 ERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TIRN-ADK 556 (1228)
T ss_pred CCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hhhc-cCE
Confidence 77654 99999999999999999999999999999999999999999998765 6999999999987 3333 555
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-32 Score=293.42 Aligned_cols=186 Identities=23% Similarity=0.338 Sum_probs=153.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++||+.+......
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--- 99 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--- 99 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC---
Confidence 47999999999999999999999987 999999998875422 34679999999999999999999987532100
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
..+ . +.+..++++++.+||++..++.+. .||||||||++||||+
T Consensus 100 ~~~------~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral 143 (213)
T TIGR01277 100 KLN------A-------------------------EQQEKVVDAAQQVGIADYLDRLPE-----QLSGGQRQRVALARCL 143 (213)
T ss_pred Ccc------H-------------------------HHHHHHHHHHHHcCcHHHhhCCcc-----cCCHHHHHHHHHHHHH
Confidence 000 0 001234568889999876665554 5999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecC
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 229 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~ 229 (1245)
+.+|++++|||||+|||+.++..+.+.|+++.+. .++++++++|+.+++.+.||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSE-RQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999998653 36778889999999999999999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-32 Score=296.86 Aligned_cols=181 Identities=24% Similarity=0.330 Sum_probs=149.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+....
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLII 106 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHh
Confidence 47999999999999999999999887 999999998775422 235799999999888999999999886432
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.+.. .. +....++++++.+||.+..++.++ .||||||||++
T Consensus 107 ~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ 147 (222)
T PRK10908 107 AGAS----------GD------------------------DIRRRVSAALDKVGLLDKAKNFPI-----QLSGGEQQRVG 147 (222)
T ss_pred cCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCCch-----hCCHHHHHHHH
Confidence 2100 00 001224567888898876665544 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEE
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIV 225 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv 225 (1245)
|||||+.+|++++|||||+|||+.++..+.+.|+++++ .++++++++|+.+++...||++++|++|+++
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR--VGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999999999999864 3567888999999999999999999999975
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=296.26 Aligned_cols=203 Identities=22% Similarity=0.280 Sum_probs=161.4
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~---~~~G~i~~~g 751 (1245)
.+.++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 467888887652 235999999999999999999999999999999999975421 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGV 825 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~ 825 (1245)
.++.. ...++.++|++|++.+++ .|++|++.|...... .....+.+++++++++.+++.+ +.+ ... ...
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~-~~~ 145 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKD-DLK-KSA 145 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhh-Hhh-CCc
Confidence 88642 133567899999988887 899999988654321 1123344556788999998853 111 111 124
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 826 ~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 146 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~ 215 (251)
T PRK14270 146 LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDY 215 (251)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCE
Confidence 57999999999999999999999999999999999999999999999875 689999999985 55666776
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.1e-32 Score=296.46 Aligned_cols=187 Identities=34% Similarity=0.570 Sum_probs=150.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC---CCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD---SSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~---~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+++|+||||||||||+++|+|.++ |+ +|+|.++|+++.....++.++|++|++.+++.+||+||+.++......
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~ 111 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLP 111 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcc
Confidence 479999999999999999999998 66 999999998875434456799999999999999999999986543211
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHH-HHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY-ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
.... ... ....++. .++.+++.+..++.+ +.||||||||++||
T Consensus 112 ~~~~-------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la 155 (226)
T cd03234 112 RKSS-------DAI------------------------RKKRVEDVLLRDLALTRIGGNLV-----KGISGGERRRVSIA 155 (226)
T ss_pred cccc-------hHH------------------------HHHHHHHHHHHhhcchhhhcccc-----cCcCHHHHHHHHHH
Confidence 0000 000 0011233 677788876655544 45999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCC-hhHHhhccceEEecCCcEEEec
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPA-PEVYNLFDDIILVSDGQIVYQG 228 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~-~~~~~~~D~v~vl~~G~iv~~G 228 (1245)
|||+.+|+++||||||+|||+.++..+.+.|+++++ .+.++++++|+. .++.+.||++++|++|++++.|
T Consensus 156 ral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~--~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 156 VQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR--RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998864 255677788887 6899999999999999998875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.1e-32 Score=297.57 Aligned_cols=187 Identities=27% Similarity=0.364 Sum_probs=149.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHD--IHIGEMTVRETLAFSA 72 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~--~~~~~~Tv~e~l~f~~ 72 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+++.+||+||+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~ 109 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL 109 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHH
Confidence 47999999999999999999999887 999999999875432 245799999998 4667899999998764
Q ss_pred hccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc-ccccccccCccccccccccch
Q 000872 73 RCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRK 151 (1245)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrq 151 (1245)
....... ..+ ......+++++.++|. +..+..+ ..|||||||
T Consensus 110 ~~~~~~~---------~~~-----------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~q 152 (228)
T cd03257 110 RIHGKLS---------KKE-----------------------ARKEAVLLLLVGVGLPEEVLNRYP-----HELSGGQRQ 152 (228)
T ss_pred HhccCCc---------HHH-----------------------HHHHHHHHHHHHCCCChhHhhCCc-----hhcCHHHHH
Confidence 3221000 000 0011124577888885 4455444 459999999
Q ss_pred hhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEec
Q 000872 152 RVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228 (1245)
Q Consensus 152 Rv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G 228 (1245)
|++|||||+.+|+++||||||+|||+.++..+.+.|+++++. .+++|++++|+.+++...||++++|++|+++..|
T Consensus 153 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE-LGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998753 2567888999999999999999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=299.22 Aligned_cols=208 Identities=20% Similarity=0.249 Sum_probs=164.4
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++++..+.. ....+.+.+|+|+|+++++||++||+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 788899887742100 0001124699999999999999999999999999999999998654 4899999998764
Q ss_pred c---ccccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCC
Q 000872 756 Q---ETFTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLS 829 (1245)
Q Consensus 756 ~---~~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lS 829 (1245)
. ...++.++|++|+.. +.+.+|+.|++.+....+. .....+.++.++++++.+|+. +..+.. ...||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcC
Confidence 2 123456899999875 5677899999987654331 223344456688999999994 555543 34699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~ 219 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQ 219 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999999999998764 899999999985 55556676
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.5e-32 Score=312.16 Aligned_cols=179 Identities=25% Similarity=0.359 Sum_probs=154.1
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 000872 706 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-------ETFTRISGYCEQNDIHSPYVTV 778 (1245)
Q Consensus 706 ~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 778 (1245)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|+..+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 89999999999999999999999999999998654 48999999987632 1345679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCC
Q 000872 779 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858 (1245)
Q Consensus 779 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgL 858 (1245)
+||+.|..... ...+.+++++++++.+||.+..+..+ +.||||||||++|||+|+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998865321 12334556899999999988777654 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 859 DARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 859 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|+.++..+.+.|++++++ |+|||+++|++. ++....|+
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~ 201 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADR 201 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999998765 899999999986 56667777
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=301.02 Aligned_cols=201 Identities=23% Similarity=0.294 Sum_probs=164.9
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++.+.. ...+.+|+|+|+++++||++||+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEC
Confidence 4788999887631 0123599999999999999999999999999999999998764 489999999886
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 755 NQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
.. ...++.+||++|++. .++..||.|++.+..... ....++..++++++++.+||.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234667999999964 566789999998764322 2233444567899999999987766543 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++... ...|+
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~--~~~d~ 209 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEA--ASSDR 209 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HhCCE
Confidence 9999999999999999999999999999999999999999998765 89999999998753 23565
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-32 Score=307.03 Aligned_cols=191 Identities=25% Similarity=0.340 Sum_probs=157.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCC--C---cccceEEEeccccc-cCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHE--F---VPQRTAAYISQHDI-HIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~--~---~~~~~~~yv~Q~~~-~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+||||||||||+++|+|.++|. +|+|.++|+++.. . ..++.++|++|++. .+...||+||+.++...
T Consensus 34 ~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 110 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN 110 (283)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHH
Confidence 47999999999999999999999987 9999999988741 1 12457999999863 34568999999876432
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.+. ... +..+.++++++.+||.+..++.++ .||||||||++
T Consensus 111 ~~~----------~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrl~ 151 (283)
T PRK13636 111 LKL----------PED------------------------EVRKRVDNALKRTGIEHLKDKPTH-----CLSFGQKKRVA 151 (283)
T ss_pred cCC----------CHH------------------------HHHHHHHHHHHHCCChhhhhCCcc-----cCCHHHHHHHH
Confidence 110 000 011235678899999877766554 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
|||||+.+|++|||||||+|||+.++..+.+.|+++++. .+++|++++|+.+++...||++++|++|++++.|+++++.
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE-LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 3667888999999999999999999999999999988764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=291.02 Aligned_cols=178 Identities=23% Similarity=0.343 Sum_probs=149.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 000872 706 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-------ETFTRISGYCEQNDIHSPYVTV 778 (1245)
Q Consensus 706 ~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 778 (1245)
|+|+++++ |+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|+..+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 99999999999999999999998654 48999999987532 1235678999999988889999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCC
Q 000872 779 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858 (1245)
Q Consensus 779 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgL 858 (1245)
+|++.+..... .....+++++++++.+|+.+..+.. .+.||||||||++||++|+.+|++++|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 2233445678999999998766554 3469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 859 DARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 859 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|+.++..+.+.|++++++ |+|||+++|++. ++-+..|+
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 201 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADR 201 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCE
Confidence 999999999999998765 899999999985 33445555
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-31 Score=297.16 Aligned_cols=204 Identities=22% Similarity=0.307 Sum_probs=161.1
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-e--eEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-Y--ITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~-~--~~G~i~~~g 751 (1245)
.+.++|+++.+. .+.+|+|+|++++|||+++|+|+||||||||+++|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 477888887653 235999999999999999999999999999999999975532 2 489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.++.. ..+++.++|++|+..+++ .|++||+.+....+. .....+.++.++++++.+++.+...... +....
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 149 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKL-NKSAL 149 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHh-cCCcc
Confidence 87632 234567999999988887 899999987654332 1123334456788899998843111111 12245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 150 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~ 218 (259)
T PRK14260 150 GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDF 218 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCe
Confidence 7999999999999999999999999999999999999999999999865 699999999986 55566666
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-32 Score=294.89 Aligned_cols=182 Identities=26% Similarity=0.396 Sum_probs=153.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSR 80 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~ 80 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .+.++|++|++.+++.+|++||+.+.......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~--- 100 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLLGL--- 100 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcCC---
Confidence 47999999999999999999999887 999999998765322 25799999999889999999999875432110
Q ss_pred cchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHHh
Q 000872 81 YDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV 160 (1245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1245)
.+..+.++++.+||++..+..++ .||||||||++||||++
T Consensus 101 -----------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 101 -----------------------------------PDSRIDEVLNIVDLTNTGKKKAK-----QFSLGMKQRLGIAIALL 140 (223)
T ss_pred -----------------------------------CHHHHHHHHHHcCCcHHHhhhHh-----hCCHHHHHHHHHHHHHh
Confidence 00123557788899876665554 59999999999999999
Q ss_pred cCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChh
Q 000872 161 GPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231 (1245)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~ 231 (1245)
.+|++++|||||+|||+.++..+.+.|+++++ .+.++++++|+.+++...||++++|++|++++.|++.
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPE--QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999999864 3567888999999999999999999999999999764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-32 Score=304.48 Aligned_cols=188 Identities=27% Similarity=0.388 Sum_probs=155.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc----ccceEEEeccccc-cCCCCCHHHHHHHHHhcc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV----PQRTAAYISQHDI-HIGEMTVRETLAFSARCQ 75 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~~~-~~~~~Tv~e~l~f~~~~~ 75 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+...|++||+.+.....
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 106 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL 106 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc
Confidence 47999999999999999999999987 999999999875432 2356999999875 366789999998764321
Q ss_pred CCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHH
Q 000872 76 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTT 155 (1245)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~i 155 (1245)
+. ... +..+.++++++.+||.+..++.++ .||||||||++|
T Consensus 107 ~~----------~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~l 147 (274)
T PRK13644 107 CL----------PPI------------------------EIRKRVDRALAEIGLEKYRHRSPK-----TLSGGQGQCVAL 147 (274)
T ss_pred CC----------CHH------------------------HHHHHHHHHHHHCCCHHHhcCCcc-----cCCHHHHHHHHH
Confidence 10 000 011235668889999887776655 599999999999
Q ss_pred HHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 156 GEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 156 a~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
||||+.+|+++||||||+|||+.++..+.+.|++++. .+++|++++|+.+++ ..||++++|++|++++.|+.+++
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~~tH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE--KGKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHH-hhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999864 367788899999988 56999999999999999998775
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-32 Score=300.01 Aligned_cols=191 Identities=26% Similarity=0.419 Sum_probs=154.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSS--LKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|+|||||||||++|+|.++|. ...+|+|.++|+++... ..++.++|++|++.+++ .|++||+.+...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~ 107 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPR 107 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHH
Confidence 47999999999999999999999753 12389999999987532 12457999999988888 999999998653
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc----ccccccccCcccccccccc
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD----VCADTVVGDEMLRGISGGQ 149 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~~t~vg~~~~~~LSGGq 149 (1245)
..+. .. .. +....++.+++.+||. +..+..+ +.|||||
T Consensus 108 ~~~~---~~------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG~ 149 (247)
T TIGR00972 108 LHGI---KD------KK------------------------ELDEIVEESLKKAALWDEVKDRLHDSA-----LGLSGGQ 149 (247)
T ss_pred hcCC---CC------HH------------------------HHHHHHHHHHHHcCCCcchhhHhhCCc-----ccCCHHH
Confidence 3210 00 00 0112346678888987 4455444 4699999
Q ss_pred chhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecC
Q 000872 150 RKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 229 (1245)
Q Consensus 150 rqRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~ 229 (1245)
|||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ + .++++++|+.+++..+||++++|++|++++.|+
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998864 3 678889999999999999999999999999998
Q ss_pred hhhH
Q 000872 230 LEHV 233 (1245)
Q Consensus 230 ~~~~ 233 (1245)
++++
T Consensus 227 ~~~~ 230 (247)
T TIGR00972 227 TEQI 230 (247)
T ss_pred HHHH
Confidence 8765
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-32 Score=277.85 Aligned_cols=192 Identities=23% Similarity=0.388 Sum_probs=170.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccCCCCCHHHHHHHHHhccCCCCc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSR 80 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~~ 80 (1245)
|.+++|||||||||++++|+|.++|+ +|+|.++|.+++... ..+|||+|.+--+++.+||.|.|.|.+++++++..
T Consensus 30 i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~ 105 (300)
T COG4152 30 IFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKA 105 (300)
T ss_pred EEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhccCccCcHHHHHHHHHHhcCCcHH
Confidence 57899999999999999999999988 999999999876543 34699999999999999999999999999875321
Q ss_pred cchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHHh
Q 000872 81 YDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV 160 (1245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1245)
+++...+.+++.+++......+| +.||.|++|++.+-.+++
T Consensus 106 ----------------------------------e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisavi 146 (300)
T COG4152 106 ----------------------------------EIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVI 146 (300)
T ss_pred ----------------------------------HHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHh
Confidence 12334577889999988776554 469999999999999999
Q ss_pred cCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHHHH
Q 000872 161 GPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFF 237 (1245)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~~f 237 (1245)
++|+++|||||+|||||.+.+.+.+.+++++. .|.||+..+|.++.+.++||++++|++|+.|.+|+.++++..|
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~--~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKE--EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHh--cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 99999999999999999999999999999876 5788888999999999999999999999999999999987643
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=299.63 Aligned_cols=203 Identities=25% Similarity=0.387 Sum_probs=159.9
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEh
Confidence 578888887652 123699999999999999999999999999999999998654 489999999876
Q ss_pred CcccccceEEEEccCCCCC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000872 755 NQETFTRISGYCEQNDIHS--PYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 831 (1245)
Q Consensus 755 ~~~~~~~~~~~v~q~~~~~--~~ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 831 (1245)
.....++.++|++|+..+. ...+++|++.+....... ........++.++++++.+|+.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4332234689999987642 234788888653211000 01112233456788999999988777654 469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 832 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 832 erqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~ 211 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDY 211 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998777999999999985 44555665
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-32 Score=294.31 Aligned_cols=179 Identities=28% Similarity=0.444 Sum_probs=146.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDI-HIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~-~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.+|++||+.+.....+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~ 105 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG 105 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC
Confidence 47999999999999999999999887 999999998775432 2357999999874 3678899999987543211
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
. ... +....++++++.+||++..+..++ .||||||||++||
T Consensus 106 ~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la 146 (211)
T cd03225 106 L----------PEE------------------------EIEERVEEALELVGLEGLRDRSPF-----TLSGGQKQRVAIA 146 (211)
T ss_pred C----------CHH------------------------HHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHH
Confidence 0 000 001234567888999876665554 5999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCc
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQ 223 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~ 223 (1245)
|||+.+|++++|||||+|||+.++..+.+.|+++++ .++++++++|+.+++..+||++++|++|+
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 147 GVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA--EGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999875 25678889999999999999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-31 Score=297.23 Aligned_cols=204 Identities=23% Similarity=0.284 Sum_probs=161.7
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR---GYITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~---~~~~G~i~~~g 751 (1245)
.++++|+++.+. ++.+|+|+|+.++|||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 25 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 588999988763 23599999999999999999999999999999999998542 13589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.+... ..+++.++|++|+..+++. |++||+.+....+. ....+..++.++++++.+++.+......+ ...+
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 167 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLH-ENAF 167 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhh-CCcc
Confidence 87642 2346779999999888875 99999987654321 11222334567888888888642111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 168 ~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~ 236 (272)
T PRK14236 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDY 236 (272)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCE
Confidence 7999999999999999999999999999999999999999999999875 799999999985 44556676
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-32 Score=301.68 Aligned_cols=205 Identities=23% Similarity=0.319 Sum_probs=158.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... +..++|++|++.+++.+||+||+.++.....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 109 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQL 109 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccc
Confidence 47999999999999999999999987 9999999988754321 2358999999999999999999998643110
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
...... ..... +..+ ....+....++++++.+||.+..+..++ .||||||||++||
T Consensus 110 ~~~~~~---~~~~~-------~~~~---------~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la 165 (255)
T PRK11300 110 KTGLFS---GLLKT-------PAFR---------RAESEALDRAATWLERVGLLEHANRQAG-----NLAYGQQRRLEIA 165 (255)
T ss_pred cchhhh---hhccc-------cccc---------cchhHHHHHHHHHHHhCChhhhhhCChh-----hCCHHHHHHHHHH
Confidence 000000 00000 0000 0000112335667888999876666554 5999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+||+.+|+++||||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.+.||++++|++|++++.|+++++
T Consensus 166 ~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 166 RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE-HNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHH
Confidence 9999999999999999999999999999999998653 356788899999999999999999999999999987765
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.4e-32 Score=299.22 Aligned_cols=196 Identities=22% Similarity=0.354 Sum_probs=157.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.++.....
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~ 106 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDK 106 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccc
Confidence 47999999999999999999999887 9999999987754321 2469999999999999999999988543110
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
..+........ .+....++++++.+|+++..++.++ .||||||||++||
T Consensus 107 --~~~~~~~~~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Ge~qrv~la 155 (242)
T TIGR03411 107 --SVFASLFFRLS------------------------AEEKDRIEEVLETIGLADEADRLAG-----LLSHGQKQWLEIG 155 (242)
T ss_pred --ccccccccccH------------------------HHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHH
Confidence 00000000000 0012335678889999877766555 5999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
||++.+|++++|||||+|||+.++..+.+.|+++++ +.++++++|+.+++.++||++++|++|++++.|+.+++
T Consensus 156 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 156 MLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG---KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc---CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 999999999999999999999999999999999864 35788899999999999999999999999999987765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-32 Score=301.97 Aligned_cols=189 Identities=22% Similarity=0.316 Sum_probs=155.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC----------------cccceEEEeccccccCCCCCH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF----------------VPQRTAAYISQHDIHIGEMTV 64 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~----------------~~~~~~~yv~Q~~~~~~~~Tv 64 (1245)
+++|+|+||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv 109 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 109 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcH
Confidence 47999999999999999999999887 99999999876421 123579999999999999999
Q ss_pred HHHHHHHHh-ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccc-cccccCccc
Q 000872 65 RETLAFSAR-CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCA-DTVVGDEML 142 (1245)
Q Consensus 65 ~e~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-~t~vg~~~~ 142 (1245)
+||+.++.. .... ... +....++++++.+||.+.. +.. +
T Consensus 110 ~enl~~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~-----~ 150 (257)
T PRK10619 110 LENVMEAPIQVLGL----------SKQ------------------------EARERAVKYLAKVGIDERAQGKY-----P 150 (257)
T ss_pred HHHHHHHHHHhCCC----------CHH------------------------HHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 999987532 1100 000 0112345688899997653 433 3
Q ss_pred cccccccchhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCC
Q 000872 143 RGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDG 222 (1245)
Q Consensus 143 ~~LSGGqrqRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G 222 (1245)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .+.++++++|+.+++..+||++++|++|
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~g~tiiivsH~~~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGFARHVSSHVIFLHQG 228 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 46999999999999999999999999999999999999999999999864 3677888999999999999999999999
Q ss_pred cEEEecChhhH
Q 000872 223 QIVYQGPLEHV 233 (1245)
Q Consensus 223 ~iv~~G~~~~~ 233 (1245)
++++.|+++++
T Consensus 229 ~i~~~~~~~~~ 239 (257)
T PRK10619 229 KIEEEGAPEQL 239 (257)
T ss_pred EEEEeCCHHHh
Confidence 99999988765
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=293.90 Aligned_cols=186 Identities=24% Similarity=0.294 Sum_probs=151.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--eeEEEEEECCeeCCcccc-cceEEEEccCCC--CCCCCC
Q 000872 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG--YITGNITISGYPKNQETF-TRISGYCEQNDI--HSPYVT 777 (1245)
Q Consensus 703 ~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~lt 777 (1245)
+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+...... ++.++|++|+.. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 578999999999999999999999999999999986531 148999999988654322 357899999974 556789
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCC
Q 000872 778 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP---LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 854 (1245)
Q Consensus 778 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~---~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEp 854 (1245)
+.|++.+...... ....+.+++++++++.+++.+ ..+.. ...||||||||++|||+|+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543321 112334566899999999973 33333 346999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 855 TSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 855 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|+|||..+...+.+.|++++++ |+|||+++|+++ ++....|+
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 195 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADE 195 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999998764 899999999987 55566676
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-32 Score=300.75 Aligned_cols=190 Identities=32% Similarity=0.488 Sum_probs=156.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++......
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 106 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL 106 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC
Confidence 47999999999999999999999887 999999998765432 235699999998888889999999875421100
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
. .. +....++++++.+||.+..++.++ .||||||||++|||
T Consensus 107 -~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGe~qrv~la~ 147 (258)
T PRK13548 107 -S---------RA------------------------EDDALVAAALAQVDLAHLAGRDYP-----QLSGGEQQRVQLAR 147 (258)
T ss_pred -C---------cH------------------------HHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHH
Confidence 0 00 001234668888999877776665 59999999999999
Q ss_pred HHh------cCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChh
Q 000872 158 MLV------GPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231 (1245)
Q Consensus 158 al~------~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~ 231 (1245)
||+ .+|++++|||||+|||+.++..+.+.|+++++. .+.+|++++|+.+++..+||++++|++|++++.|+++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE-RGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPA 226 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHH
Confidence 999 599999999999999999999999999998633 3567888999999999999999999999999999877
Q ss_pred hH
Q 000872 232 HV 233 (1245)
Q Consensus 232 ~~ 233 (1245)
++
T Consensus 227 ~~ 228 (258)
T PRK13548 227 EV 228 (258)
T ss_pred HH
Confidence 65
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-31 Score=289.86 Aligned_cols=205 Identities=22% Similarity=0.280 Sum_probs=159.0
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECC--e-
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG--Y- 752 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g--~- 752 (1245)
++++|+++.+..... ...++.+|+|+|++|++||+++|+|+||||||||+++|+|..++ .+|+|.++| .
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCc
Confidence 467788776632100 00124699999999999999999999999999999999998654 479999984 2
Q ss_pred -eCCc---cc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCC
Q 000872 753 -PKNQ---ET----FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-RQALVGLP 823 (1245)
Q Consensus 753 -~~~~---~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~ 823 (1245)
+... .. .++.++|++|+..+++.+||+|++.+..... ........+.+.++++.+|+.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3211 11 2346899999998999999999998764322 22333445567889999999753 3433
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 824 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+..|+
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~ 218 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADR 218 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcce
Confidence 3579999999999999999999999999999999999999999999998777999999999954 33344554
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-31 Score=290.06 Aligned_cols=181 Identities=26% Similarity=0.345 Sum_probs=146.7
Q ss_pred ccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcccccceEEEEccCCCCCCCC
Q 000872 697 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYV 776 (1245)
Q Consensus 697 ~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l 776 (1245)
.++.+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+||.+... ..+...+.+.+
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~---------~~~~~~~~~~~ 99 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL---------LGLGGGFNPEL 99 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh---------hcccccCCCCC
Confidence 34556799999999999999999999999999999999997654 48999999976421 11122345678
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCC
Q 000872 777 TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 856 (1245)
Q Consensus 777 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTs 856 (1245)
||+|++.+....+ .....+.++.++++++.+++.+..++.+ +.||||||||++|||+|+.+|++++|||||+
T Consensus 100 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~ 171 (224)
T cd03220 100 TGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLA 171 (224)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999998765432 1233444556788999999988777654 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 857 GLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 857 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||+.++..+.+.|++++++|+|||+++|++. ++-+..|+
T Consensus 172 gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 211 (224)
T cd03220 172 VGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDR 211 (224)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999998777899999999975 33344454
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=310.73 Aligned_cols=175 Identities=23% Similarity=0.356 Sum_probs=152.0
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 000872 706 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-------ETFTRISGYCEQNDIHSPYVTV 778 (1245)
Q Consensus 706 ~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 778 (1245)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999998654 48999999987532 2345679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCC
Q 000872 779 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858 (1245)
Q Consensus 779 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgL 858 (1245)
+||+.|... ...+++++++++.+||.+..+..+ +.||||||||++|||+|+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 122356889999999988777654 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 859 DARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 859 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|+.++..+.+.|+++.++ |+|||+++|++. ++.++.|+
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~ 198 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADR 198 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCE
Confidence 999999999999998765 899999999985 66677777
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.6e-32 Score=303.52 Aligned_cols=191 Identities=25% Similarity=0.365 Sum_probs=157.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDI-HIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~-~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+|+||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+...||+||+.+.....+
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~ 108 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG 108 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC
Confidence 47999999999999999999999987 999999998875422 2356899999863 3446899999987543211
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
. .. .+..+.++++++.+||.+..++.+. .||||||||++||
T Consensus 109 ~----------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrl~la 149 (277)
T PRK13652 109 L----------DE------------------------ETVAHRVSSALHMLGLEELRDRVPH-----HLSGGEKKRVAIA 149 (277)
T ss_pred C----------CH------------------------HHHHHHHHHHHHHCCChhHhcCCcc-----cCCHHHHHHHHHH
Confidence 0 00 0011235678899999877776654 5999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
|||+.+|+++||||||+|||+.++..+.+.|+++++. .++++++++|+.+++.+.||++++|++|++++.|+++++.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 9999999999999999999999999999999998753 3577888999999999999999999999999999988764
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.1e-32 Score=303.24 Aligned_cols=189 Identities=27% Similarity=0.386 Sum_probs=154.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC-----cccceEEEecccccc-CCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIH-IGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~-~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.. +...|+.||+.+....
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~ 105 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRN 105 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHH
Confidence 47999999999999999999999987 99999999987421 123569999998752 4556899999875432
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.+. ... +....++++++.+||.+..++.++ .||||||||++
T Consensus 106 ~~~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~ 146 (271)
T PRK13638 106 LGV----------PEA------------------------EITRRVDEALTLVDAQHFRHQPIQ-----CLSHGQKKRVA 146 (271)
T ss_pred cCC----------CHH------------------------HHHHHHHHHHHHcCCHhHhcCCch-----hCCHHHHHHHH
Confidence 110 000 011234568888899877766554 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
|||||+.+|+++||||||+|||+.++..+.+.|++++. .+++|++++|+.+++..+||++++|++|++++.|+++++
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA--QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999864 356788899999999999999999999999999998765
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-31 Score=295.54 Aligned_cols=205 Identities=21% Similarity=0.280 Sum_probs=163.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~---~~~G~i~~~g 751 (1245)
.++++|+++.+. .+.+|+|+|+++++||++||+|+||||||||+++|+|..++. ..+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478899987763 225999999999999999999999999999999999976532 1379999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.++.. ..+++.++|++|+..+++ .|+.|++.+...... ..+..+.++.++++++.+++.+..+...+. ...
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87531 234567999999988887 899999987653321 112333445678899999986432222221 245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+++|++|+|||||+|||..+...+.+.|+++++ .|+|||+++|++. ++.+..|+
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~ 220 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDF 220 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCE
Confidence 7999999999999999999999999999999999999999999999864 4899999999985 56677777
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.5e-32 Score=336.44 Aligned_cols=198 Identities=23% Similarity=0.303 Sum_probs=163.8
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++|.++. ..+++|+|+|++++|||++||+|+||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 407 (582)
T PRK11176 341 DIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHDL 407 (582)
T ss_pred eEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEEh
Confidence 6999999998742 124699999999999999999999999999999999998764 489999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 824 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~~ 824 (1245)
++ ..+++.++|++|++.+++ -|++||+.++. +.+. .++.++++++..|+.+ -.||.+|..+
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~----~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g 478 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQY----SREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478 (582)
T ss_pred hhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCC----CHHHHHHHHHHhCcHHHHHhcccccCceeCCCC
Confidence 53 456788999999998886 59999997641 1111 2344677777777553 3477777653
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhc
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAG 898 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~~ 898 (1245)
+.||||||||++|||+|+++|+||+||||||+||+.++..+.+.|+++. +++|+|+++|+++ ..+.+|+.
T Consensus 479 -~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~I 548 (582)
T PRK11176 479 -VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEI 548 (582)
T ss_pred -CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEE
Confidence 5699999999999999999999999999999999999999999999875 4799999999994 45678873
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-32 Score=303.13 Aligned_cols=189 Identities=25% Similarity=0.364 Sum_probs=155.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDI-HIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~-~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.++|++|++. .++.+||+||+.++.....
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~ 113 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK 113 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC
Confidence 47999999999999999999999987 999999999875432 2467999999974 5778999999987643211
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
. .. .+....++++++.+||.+..++.++ .||||||||++||
T Consensus 114 ~----------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 154 (271)
T PRK13632 114 V----------PP------------------------KKMKDIIDDLAKKVGMEDYLDKEPQ-----NLSGGQKQRVAIA 154 (271)
T ss_pred C----------CH------------------------HHHHHHHHHHHHHcCCHHHhhCCcc-----cCCHHHHHHHHHH
Confidence 0 00 0011235678889999877776654 5999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
|||+.+|++++|||||+|||+.++..+.+.|+++++. +++++++++|+.+++. .||++++|++|++++.|+.+++
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999998653 3467888889888875 7999999999999999987765
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.4e-32 Score=303.98 Aligned_cols=189 Identities=23% Similarity=0.350 Sum_probs=152.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc-------ccceEEEeccccc-cCCCCCHHHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV-------PQRTAAYISQHDI-HIGEMTVRETLAFSA 72 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~~~-~~~~~Tv~e~l~f~~ 72 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+...||+||+.+..
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~ 111 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGP 111 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHH
Confidence 47999999999999999999999987 999999998875321 2356999999862 233479999998764
Q ss_pred hccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcc-cccccccCccccccccccch
Q 000872 73 RCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV-CADTVVGDEMLRGISGGQRK 151 (1245)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrq 151 (1245)
...+. ... +....++++++.+||.+ ..+..+ +.|||||||
T Consensus 112 ~~~~~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~q 152 (280)
T PRK13649 112 QNFGV----------SQE------------------------EAEALAREKLALVGISESLFEKNP-----FELSGGQMR 152 (280)
T ss_pred HHcCC----------CHH------------------------HHHHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHH
Confidence 32110 000 01123456788889963 445444 459999999
Q ss_pred hhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChh
Q 000872 152 RVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231 (1245)
Q Consensus 152 Rv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~ 231 (1245)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .+++|++++|+.+++..+||++++|++|++++.|+++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ--SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999864 3567888999999999999999999999999999987
Q ss_pred hH
Q 000872 232 HV 233 (1245)
Q Consensus 232 ~~ 233 (1245)
++
T Consensus 231 ~~ 232 (280)
T PRK13649 231 DI 232 (280)
T ss_pred HH
Confidence 76
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-31 Score=294.92 Aligned_cols=204 Identities=24% Similarity=0.286 Sum_probs=160.1
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~---~~~G~i~~~g 751 (1245)
.+.++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 467788877652 235999999999999999999999999999999999975532 2489999999
Q ss_pred eeCCc----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000872 752 YPKNQ----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 827 (1245)
Q Consensus 752 ~~~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 827 (1245)
.+... ...++.++|++|++.+++ .|+.|++.+...... ....+..+++++++++.+++.+....... .....
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhh-cCccc
Confidence 87631 234567999999988887 899999987643221 11223344567788888887542111111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 828 lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~ 213 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDR 213 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999875 699999999985 55666676
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=303.83 Aligned_cols=210 Identities=17% Similarity=0.193 Sum_probs=162.3
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--CeeEEEEEECCee
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR--GYITGNITISGYP 753 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~--~~~~G~i~~~g~~ 753 (1245)
++++|++..+... .+...+|+|||++|++||++||+|+||||||||+++|+|...+ ...+|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 6788888776421 1234699999999999999999999999999999999997642 1358999999987
Q ss_pred CCcc---c----ccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHcCCccccccccc
Q 000872 754 KNQE---T----FTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSE---VNSKTREMFVEEVMELVELNPLRQALVG 821 (1245)
Q Consensus 754 ~~~~---~----~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~lr~~~~---~~~~~~~~~v~~~l~~l~l~~~~~~~~g 821 (1245)
+... . +++.++||+|+.. +.|.+||.+++........... ....+.++++.++++.+||.+..+..
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~-- 152 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM-- 152 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH--
Confidence 6431 1 1346999999975 5688999999975422111000 11233456788999999997532211
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 822 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 822 ~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+.....||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|+.+ .+.+..|+
T Consensus 153 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dr 228 (330)
T PRK15093 153 RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADK 228 (330)
T ss_pred hCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 1123579999999999999999999999999999999999999999999998764 899999999985 44456676
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=296.82 Aligned_cols=202 Identities=22% Similarity=0.291 Sum_probs=160.1
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR---GYITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~---~~~~G~i~~~g 751 (1245)
.++++++++.+. .+.+|+|+|+.|++||++||+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 578899987652 23599999999999999999999999999999999997542 13589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.+... ..+++.++|++|+..+++. |+.|++.+....+. ... ..+++++++++.+|+.+....... ....
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~-~~~~ 179 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLD-SSGL 179 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHh-CCcc
Confidence 87532 2346679999999887775 99999987654432 122 334568899999998531111111 1235
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++||++|+.+|+||+|||||+|||..+...+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 180 ~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dr 248 (285)
T PRK14254 180 DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDK 248 (285)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCE
Confidence 7999999999999999999999999999999999999999999999976 489999999986 44455665
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-32 Score=299.24 Aligned_cols=189 Identities=25% Similarity=0.343 Sum_probs=155.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCC------C---cccceEEEeccccccCCCCCHHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHE------F---VPQRTAAYISQHDIHIGEMTVRETLAFS 71 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~------~---~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~ 71 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.. . ..++.++|++|++.+++.+||+||+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~ 106 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEA 106 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHH
Confidence 47999999999999999999999887 9999999987621 0 1235699999999999999999999753
Q ss_pred H-hccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccc
Q 000872 72 A-RCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQR 150 (1245)
Q Consensus 72 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 150 (1245)
. ...+. ... +....+++.++.+||++..+..++ .||||||
T Consensus 107 ~~~~~~~----------~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 147 (242)
T PRK11124 107 PCRVLGL----------SKD------------------------QALARAEKLLERLRLKPYADRFPL-----HLSGGQQ 147 (242)
T ss_pred HHHHcCC----------CHH------------------------HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHH
Confidence 2 11110 000 011235668888999876666554 5999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecCh
Q 000872 151 KRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230 (1245)
Q Consensus 151 qRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~ 230 (1245)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .++++++++|+..++.+.+|++++|++|++++.|++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~ 225 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE--TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999998864 356788899999999999999999999999999987
Q ss_pred hhH
Q 000872 231 EHV 233 (1245)
Q Consensus 231 ~~~ 233 (1245)
++.
T Consensus 226 ~~~ 228 (242)
T PRK11124 226 SCF 228 (242)
T ss_pred HHh
Confidence 654
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=294.91 Aligned_cols=198 Identities=22% Similarity=0.261 Sum_probs=158.1
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--eeEEEEEECCe
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG--YITGNITISGY 752 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~--~~~G~i~~~g~ 752 (1245)
.++++|+++.++ +.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 578888887651 24899999999999999999999999999999999986541 15899999998
Q ss_pred eCCcccc-cceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc---ccccccCCCCC
Q 000872 753 PKNQETF-TRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL---RQALVGLPGVN 826 (1245)
Q Consensus 753 ~~~~~~~-~~~~~~v~q~~~--~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~---~~~~~g~~~~~ 826 (1245)
++..... ++.++|++|+.. +.+..|+.+++.+.+.... ... .++.++++++.+++.+. .+.. .+
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----PF 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----Cc
Confidence 8653322 356999999974 4466799998866443221 111 23567899999999762 3332 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++|+|||||+|||..++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~ 210 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADD 210 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCE
Confidence 79999999999999999999999999999999999999999999998764 899999999986 34455565
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=297.05 Aligned_cols=204 Identities=25% Similarity=0.300 Sum_probs=163.1
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~---~~~G~i~~~g 751 (1245)
.+.++|+++.++ .+.+|+|+|++++|||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 578899988763 246999999999999999999999999999999999976531 3589999999
Q ss_pred eeCCc----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000872 752 YPKNQ----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 827 (1245)
Q Consensus 752 ~~~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 827 (1245)
.+... ..+++.++|++|+..+++ .|++|++.+..... ...+.++.++.+.++++.+++.+..++... .....
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 234667899999988887 89999998764322 112333444556788999998753322221 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 828 lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dr 231 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDR 231 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999875 589999999985 55566776
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=294.15 Aligned_cols=205 Identities=22% Similarity=0.270 Sum_probs=159.6
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCe---eEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY---ITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~---~~G~i~~~g 751 (1245)
.+.++|+++.+. ++.+|+|+|+.|++||++||+|+||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 467788877652 2369999999999999999999999999999999999764322 379999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.++.. ..+++.++|++|++.+++.+|+.|++.+...... ....++..+.++++++.+++.+...... +...+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 147 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRL-KTPAT 147 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhh-cCCcc
Confidence 87642 2345678999999999998999999987653321 1122333455677777777642111111 11245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~ 216 (252)
T PRK14272 148 GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDT 216 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999864 799999999986 45556676
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-31 Score=293.80 Aligned_cols=204 Identities=20% Similarity=0.260 Sum_probs=159.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~---~~~G~i~~~g 751 (1245)
.+.++|+++.+. ++.+|+|+|++|++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 467888887652 235999999999999999999999999999999999976532 1369999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.+... ..+++.++|++|+..+++. |++||+.+....+.. ...+..++.++++++.+++.+....... ....
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLH-KSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhh-CCcc
Confidence 87532 2346779999999988875 999999887543311 1122334557778888887542111111 2245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +++|||+++|+++ .+-+..|+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~ 215 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDW 215 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCE
Confidence 799999999999999999999999999999999999999999999885 5899999999976 33345565
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=294.72 Aligned_cols=204 Identities=26% Similarity=0.297 Sum_probs=160.2
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~---~~~G~i~~~g 751 (1245)
.++++|+++.+. .+.+|+|+|++++|||+++|+||||||||||+++|+|..... ..+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 477888887652 235999999999999999999999999999999999974321 1379999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.+... ...++.++|++|+..+++. ||+||+.+....+.. ....+.++.++++++.+++.+...+..+ ...+
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLH-DSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhh-cChh
Confidence 87642 2345678999999888874 999999987554321 1223344567888888888532111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++++|||||+|||..++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~ 217 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDY 217 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCE
Confidence 7999999999999999999999999999999999999999999999875 689999999986 34455666
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-32 Score=307.81 Aligned_cols=196 Identities=20% Similarity=0.300 Sum_probs=155.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSS--LKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|||||||||||++|+|..++. ...+|+|.++|.++... ..++.++||||+++++ +.|++||+.|+..
T Consensus 110 ~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~ 188 (329)
T PRK14257 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPR 188 (329)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC-CCcHHHHHHhHHH
Confidence 47999999999999999999998631 12389999999987532 2356799999998876 5899999998653
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
..+.. ..+ ..++.++..++..+|.+..++.+++ ...+||||||||+
T Consensus 189 ~~~~~----------~~~-----------------------~~~~~~~~~l~~~~L~~~l~~~~~~-~~~~LSgGqkqRl 234 (329)
T PRK14257 189 NNGIN----------DRK-----------------------ILEKIVEKSLKSAALWDEVKDDLDK-AGNALSGGQQQRL 234 (329)
T ss_pred hcCCC----------hHH-----------------------HHHHHHHHHHHHcCCcchhhhhhhC-CcccCCHHHHHHH
Confidence 22100 000 0011234566777775544555654 4557999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+||||++.+|+||||||||+|||+.+...+.+.|+++.+ +.|+++++|+.+++.+.||+|++|++|++++.|+++++
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~---~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l 311 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK---KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTI 311 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998753 46788899999999999999999999999999999887
Q ss_pred H
Q 000872 234 E 234 (1245)
Q Consensus 234 ~ 234 (1245)
.
T Consensus 312 ~ 312 (329)
T PRK14257 312 F 312 (329)
T ss_pred h
Confidence 3
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=325.46 Aligned_cols=201 Identities=26% Similarity=0.346 Sum_probs=165.8
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++++. ++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67888887652 24699999999999999999999999999999999998654 4899999998764
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 756 QE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 756 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
.. ..++.++|++|+..+++.+||+|++.+....+.. .....++.+++++++++.+|+.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 21 1245689999999888999999999876432211 11123334456889999999988776654 36999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++-+..|+
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~ 210 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDD 210 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999777899999999985 45566676
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-32 Score=294.70 Aligned_cols=185 Identities=26% Similarity=0.425 Sum_probs=147.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccC--CCCCHHHHHHHHHhccCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHI--GEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~--~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++. ..++.++|++|++.+. +.+||+||+.+......
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~-- 99 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHK-- 99 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH--HHHhheEEeccccccccCCCCcHHHHHHhcccccc--
Confidence 47999999999999999999999987 999999998764 2345799999997653 34899999987532110
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
..+... .. +....++++++.+||++..++.++ .||||||||++||||
T Consensus 100 ~~~~~~---~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~a 146 (213)
T cd03235 100 GLFRRL---SK-------------------------ADKAKVDEALERVGLSELADRQIG-----ELSGGQQQRVLLARA 146 (213)
T ss_pred ccccCC---CH-------------------------HHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHH
Confidence 000000 00 011235668888999876666554 599999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEec
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G 228 (1245)
|+.+|+++||||||+|||+.++..+.+.|+++++ .++++++++|+.+++.+.||++++|++| +++.|
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999865 3667888999999999999999999886 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-32 Score=342.33 Aligned_cols=193 Identities=28% Similarity=0.366 Sum_probs=162.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++|+++. .++++|+|+|++|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.++
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEc
Confidence 6899999998742 224699999999999999999999999999999999998764 489999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-------RQALVGLPG 824 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~~ 824 (1245)
++ ..+++.+|||+|++.+++ -|++||+.+.. + .+ ++.++++++..|+.+. .||.+|..
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~- 585 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG- 585 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC-
Confidence 53 567889999999998876 59999997641 1 12 3346777887777653 36777754
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++ ++|+|+++|+++ ..+.+|+
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~ 653 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADR 653 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCE
Confidence 3579999999999999999999999999999999999999999999876 589999999984 4466777
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=300.59 Aligned_cols=190 Identities=22% Similarity=0.312 Sum_probs=155.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDI-HIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~-~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++. +++..|+++|+.+......
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~ 113 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA 113 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC
Confidence 47999999999999999999999987 999999998875432 2457999999974 6788899999988643211
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
. ... +....++.+++.+||.+..+..++ .||||||||++||
T Consensus 114 ~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 154 (269)
T PRK13648 114 V----------PYD------------------------EMHRRVSEALKQVDMLERADYEPN-----ALSGGQKQRVAIA 154 (269)
T ss_pred C----------CHH------------------------HHHHHHHHHHHHcCCchhhhCCcc-----cCCHHHHHHHHHH
Confidence 0 000 001234568888999877665554 5999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
||++.+|+++||||||+|||+.++..+.+.|+++++. .++++++++|+.+++.. +|++++|++|++++.|+++++.
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE-HNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999988652 35677788999888875 9999999999999999987763
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-32 Score=299.77 Aligned_cols=191 Identities=20% Similarity=0.287 Sum_probs=157.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC----------------cccceEEEeccccccCCCCCH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF----------------VPQRTAAYISQHDIHIGEMTV 64 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~----------------~~~~~~~yv~Q~~~~~~~~Tv 64 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++..|+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 104 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTV 104 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcH
Confidence 47999999999999999999999987 99999999877432 124579999999999999999
Q ss_pred HHHHHHHHhccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccc
Q 000872 65 RETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRG 144 (1245)
Q Consensus 65 ~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 144 (1245)
.||+.++..... .. ... +....++++++.+|+.+..+..+ +.
T Consensus 105 ~~nl~~~~~~~~--~~-------~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~-----~~ 146 (252)
T TIGR03005 105 LDNVTEAPVLVL--GM-------ARA------------------------EAEKRAMELLDMVGLADKADHMP-----AQ 146 (252)
T ss_pred HHHHHHHHHHhc--CC-------CHH------------------------HHHHHHHHHHHHcCChhHhhcCh-----hh
Confidence 999987532100 00 000 00123456788899987666544 46
Q ss_pred cccccchhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcE
Q 000872 145 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQI 224 (1245)
Q Consensus 145 LSGGqrqRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~i 224 (1245)
||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++. .++++++++|+.+++..++|++++|++|++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEMGFAREFADRVCFFDKGRI 225 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999988653 367888899999999999999999999999
Q ss_pred EEecChhhH
Q 000872 225 VYQGPLEHV 233 (1245)
Q Consensus 225 v~~G~~~~~ 233 (1245)
++.|+.+++
T Consensus 226 ~~~g~~~~~ 234 (252)
T TIGR03005 226 VEQGKPDEI 234 (252)
T ss_pred EEeCCHHHH
Confidence 999988765
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=294.78 Aligned_cols=183 Identities=28% Similarity=0.377 Sum_probs=149.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-------QRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+|++||+.+...
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~ 114 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPAL 114 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHH
Confidence 47999999999999999999999887 9999999988754322 2469999999998999999999987543
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
.+.. . .. +....++++++.+||.+..+..++ .||||||||+
T Consensus 115 ~~~~---~-------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Ge~qrl 155 (228)
T PRK10584 115 LRGE---S-------SR------------------------QSRNGAKALLEQLGLGKRLDHLPA-----QLSGGEQQRV 155 (228)
T ss_pred hcCC---C-------HH------------------------HHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHHHHH
Confidence 2110 0 00 011235668889999877666554 5999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEe
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQ 227 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~ 227 (1245)
+|||||+.+|+++||||||+|||+.++..+.+.|+++++. .+++|++++|+.+++. .+|++++|++|++++.
T Consensus 156 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 156 ALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE-HGTTLILVTHDLQLAA-RCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHH-hCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999998653 3567777889988774 5999999999998753
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-31 Score=296.49 Aligned_cols=200 Identities=22% Similarity=0.296 Sum_probs=158.8
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-CeeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--R-GYITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~--~-~~~~G~i~~~g 751 (1245)
.+.++++++.+. .+.+|+|+|+.|+|||++||+|+||||||||+++|+|... + .+.+|+|.+||
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 578899887652 2359999999999999999999999999999999999642 1 12589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 822 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 822 (1245)
.++.. ..+++.++|++|++.+++. ||.|++.+....+.. .+....++.+.++++.+|+.+ ..+.
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~---- 178 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDK---- 178 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhC----
Confidence 87532 1345679999999888774 999999886543311 122333456778888888742 2222
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 823 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 823 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
....||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|++. .+.+..|+
T Consensus 179 -~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~ 250 (286)
T PRK14275 179 -NALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDY 250 (286)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCE
Confidence 2457999999999999999999999999999999999999999999999865 689999999986 44456676
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-32 Score=300.11 Aligned_cols=190 Identities=20% Similarity=0.325 Sum_probs=151.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSL--KASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|+||||||||+++|+|..+|.. ..+|+|.++|.++... ..++.++|++|++.+++ +|++||+.+...
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~ 118 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPR 118 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHH
Confidence 479999999999999999999987410 1399999999886432 12456999999988777 899999998653
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc----ccccccccCcccccccccc
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD----VCADTVVGDEMLRGISGGQ 149 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~~t~vg~~~~~~LSGGq 149 (1245)
..+. ...+ ....++++++.+|+. +..++. +..|||||
T Consensus 119 ~~~~----------~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~ 159 (258)
T PRK14268 119 IHGA----------NKKD------------------------LDGVVENALRSAALWDETSDRLKSP-----ALSLSGGQ 159 (258)
T ss_pred HcCC----------CHHH------------------------HHHHHHHHHHHcCCCcchhhhhcCC-----hhhCCHHH
Confidence 2210 0000 012245677777774 233443 34699999
Q ss_pred chhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecC
Q 000872 150 RKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 229 (1245)
Q Consensus 150 rqRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~ 229 (1245)
|||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ ++++++++|+.+++.+.||++++|++|++++.|+
T Consensus 160 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 236 (258)
T PRK14268 160 QQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK---DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQ 236 (258)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh---CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998853 4678889999999999999999999999999999
Q ss_pred hhhH
Q 000872 230 LEHV 233 (1245)
Q Consensus 230 ~~~~ 233 (1245)
++++
T Consensus 237 ~~~~ 240 (258)
T PRK14268 237 TRQI 240 (258)
T ss_pred HHHH
Confidence 8776
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-32 Score=299.91 Aligned_cols=192 Identities=22% Similarity=0.315 Sum_probs=151.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSL--KASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+||||||||||+++|+|.++|.. ..+|+|.++|.++... ..++.++|++|++.++ .+||+||+.++..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~eni~~~~~ 113 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF-LMSIYDNISYGPK 113 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc-cCcHHHHHHHHHH
Confidence 479999999999999999999998620 1389999999876421 1245799999998877 4899999998653
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc----ccccccccCcccccccccc
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD----VCADTVVGDEMLRGISGGQ 149 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~~t~vg~~~~~~LSGGq 149 (1245)
..+. .. .. +..+.++..++.+|+. +..++.+ +.|||||
T Consensus 114 ~~~~---~~------~~------------------------~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LSgG~ 155 (254)
T PRK14273 114 IHGT---KD------KK------------------------KLDEIVEQSLKKSALWNEVKDKLNTNA-----LSLSGGQ 155 (254)
T ss_pred hcCC---CC------HH------------------------HHHHHHHHHHHHhCCchhhHHHHhCCc-----ccCCHHH
Confidence 2210 00 00 0012244566666763 3344443 4699999
Q ss_pred chhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecC
Q 000872 150 RKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 229 (1245)
Q Consensus 150 rqRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~ 229 (1245)
|||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ ++++++++|+.+++...+|++++|++|+++..|+
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 232 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE---SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESS 232 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999853 4677889999999999999999999999999999
Q ss_pred hhhHH
Q 000872 230 LEHVE 234 (1245)
Q Consensus 230 ~~~~~ 234 (1245)
++++.
T Consensus 233 ~~~~~ 237 (254)
T PRK14273 233 TDELF 237 (254)
T ss_pred HHHHH
Confidence 88763
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=307.07 Aligned_cols=198 Identities=22% Similarity=0.236 Sum_probs=157.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCC-ceeeEEEECCccCCCCcc-------cceEEEecccc--ccCCCCCHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSL-KASGKVTYNGHDMHEFVP-------QRTAAYISQHD--IHIGEMTVRETLAF 70 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~-~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~~--~~~~~~Tv~e~l~f 70 (1245)
+++|+|+||||||||+++|+|.+++.. ..+|+|.++|+++..... ++.++||+|++ .+.|.+|+.+++..
T Consensus 35 ~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~ 114 (326)
T PRK11022 35 VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIME 114 (326)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHH
Confidence 479999999999999999999987421 248999999998754332 13699999997 47889999999876
Q ss_pred HHhccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccc
Q 000872 71 SARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQR 150 (1245)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 150 (1245)
....... ... .+.+..++++++.+||.+..+. -++....||||||
T Consensus 115 ~l~~~~~---------~~~------------------------~~~~~~~~~~L~~~gL~~~~~~--l~~~p~~LSgGq~ 159 (326)
T PRK11022 115 AIKVHQG---------GNK------------------------KTRRQRAIDLLNQVGIPDPASR--LDVYPHQLSGGMS 159 (326)
T ss_pred HHHHhcC---------CCH------------------------HHHHHHHHHHHHHCCCCChHHH--HhCCchhCCHHHH
Confidence 5432100 000 0112345678899999752110 1234456999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecCh
Q 000872 151 KRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230 (1245)
Q Consensus 151 qRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~ 230 (1245)
|||+|||||+.+|++||+||||+|||+.++.++++.|+++.+. .+.++++++|+.+.+..++|+|++|++|++++.|+.
T Consensus 160 QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~-~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~ 238 (326)
T PRK11022 160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK-ENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKA 238 (326)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999998764 366788899999999999999999999999999998
Q ss_pred hhHH
Q 000872 231 EHVE 234 (1245)
Q Consensus 231 ~~~~ 234 (1245)
+++.
T Consensus 239 ~~~~ 242 (326)
T PRK11022 239 HDIF 242 (326)
T ss_pred HHHh
Confidence 8874
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-32 Score=297.03 Aligned_cols=185 Identities=21% Similarity=0.361 Sum_probs=152.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.++|++|++.+++ .||+||+.+......
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~- 105 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG- 105 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC-
Confidence 47999999999999999999999887 999999998865322 2457999999988776 699999986432110
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc-ccccccccCccccccccccchhhHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
. ....++++++.+||+ +..+.. +..||||||||++||
T Consensus 106 -----------~--------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~la 143 (241)
T PRK14250 106 -----------E--------------------------KNVDVEYYLSIVGLNKEYATRD-----VKNLSGGEAQRVSIA 143 (241)
T ss_pred -----------c--------------------------HHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHH
Confidence 0 001235577888886 344443 346999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
||++.+|+++||||||+|||+.++..+.+.|+++++. .++++++++|+.+++.+.||++++|++|+++..|+++++
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 144 RTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK-MNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999988653 356788899999999999999999999999999988765
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-32 Score=337.20 Aligned_cols=196 Identities=29% Similarity=0.445 Sum_probs=160.7
Q ss_pred eEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCee
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 753 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~ 753 (1245)
..++|+|+++.++. ++++|+|+|++++|||++||+||||||||||++.|.|..++ .+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEe
Confidence 46999999998742 34699999999999999999999999999999999997664 48999999988
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CcccccccccCC
Q 000872 754 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE-------LNPLRQALVGLP 823 (1245)
Q Consensus 754 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-------l~~~~~~~~g~~ 823 (1245)
++. ..+++.++||+|+..++. -|++||+.++. .+.++++ ++++++..+ +.+..||.+|..
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vge~ 462 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATDEE----IEEALKLANAHEFIANLPDGYDTIVGER 462 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhChHHHHHhCcccccceecCC
Confidence 654 567889999999998887 79999998752 1223322 333333332 233568889844
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 824 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
...||||||||++||||+++||+||+||||||+||+.++..|++.++++. +++|+++++|+++ .+ ...|+
T Consensus 463 -G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti-~~aD~ 532 (567)
T COG1132 463 -GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TI-KNADR 532 (567)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HH-HhCCE
Confidence 45699999999999999999999999999999999999999999999876 5789999999995 33 33676
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=300.35 Aligned_cols=192 Identities=26% Similarity=0.338 Sum_probs=155.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHD--IHIGEMTVRETLAFSA 72 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~~--~~~~~~Tv~e~l~f~~ 72 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+.+.+||+||+.+..
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 115 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPL 115 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHH
Confidence 47999999999999999999999987 999999998875432 235699999986 4667899999998654
Q ss_pred hccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc-ccccccccCccccccccccch
Q 000872 73 RCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRK 151 (1245)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrq 151 (1245)
.... . .... +....++++++.+||. +..+..+ ..|||||||
T Consensus 116 ~~~~--~-------~~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGe~q 157 (265)
T TIGR02769 116 RHLT--S-------LDES------------------------EQKARIAELLDMVGLRSEDADKLP-----RQLSGGQLQ 157 (265)
T ss_pred HHhc--C-------CCHH------------------------HHHHHHHHHHHHcCCChhhhhCCh-----hhCCHHHHH
Confidence 2110 0 0000 0112356688889996 4555544 459999999
Q ss_pred hhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChh
Q 000872 152 RVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231 (1245)
Q Consensus 152 Rv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~ 231 (1245)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++|++++|+.+.+..+||++++|++|++++.|+.+
T Consensus 158 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (265)
T TIGR02769 158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA-FGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHH
Confidence 999999999999999999999999999999999999998653 3667888999999999999999999999999999988
Q ss_pred hHH
Q 000872 232 HVE 234 (1245)
Q Consensus 232 ~~~ 234 (1245)
++.
T Consensus 237 ~~~ 239 (265)
T TIGR02769 237 QLL 239 (265)
T ss_pred HHc
Confidence 763
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=295.19 Aligned_cols=185 Identities=26% Similarity=0.350 Sum_probs=151.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC--cccceEEEec-cccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYIS-QHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~-Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|.+.... ..++.++|++ |++.+++.+|++||+.+.....+.
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~ 125 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDL 125 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999987 99999999875332 2245799997 556778899999999876543211
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
. .. +....++.+++.+||++..++.++ .||||||||++||+
T Consensus 126 ~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~ 166 (236)
T cd03267 126 P----------PA------------------------RFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAA 166 (236)
T ss_pred C----------HH------------------------HHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHH
Confidence 0 00 011234567888999888887665 49999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEec
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G 228 (1245)
||+.+|++++|||||+|||+.++..+.+.|+++++. ++.+|++++|+.+++...||++++|++|++++.|
T Consensus 167 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 167 ALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE-RGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998653 3567888999999999999999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=280.27 Aligned_cols=152 Identities=32% Similarity=0.429 Sum_probs=133.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc-----ccccceEEEEccCCCCCCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-----ETFTRISGYCEQNDIHSPY 775 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ 775 (1245)
+.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++..++.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 3599999999999999999999999999999999998654 48999999987542 2356779999999888888
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCC
Q 000872 776 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 855 (1245)
Q Consensus 776 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpT 855 (1245)
.|++|++.+. ||||||||++||++|+.+|++++|||||
T Consensus 91 ~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 91 LTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred CCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 9999988532 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 856 SGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 856 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+..|+
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 170 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADR 170 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 999999999999999999876 899999999975 34445555
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=293.41 Aligned_cols=202 Identities=17% Similarity=0.198 Sum_probs=160.7
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~---~~~G~i~~~g 751 (1245)
.+..+.+++.+ +++.+|+|+|+.++|||++||+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 8 ~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 74 (261)
T PRK14263 8 VMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLG 74 (261)
T ss_pred eEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECC
Confidence 46666666544 2346999999999999999999999999999999999976431 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.+... ..+++.++|++|+..++ .+|+.||+.+....+. ...+..+.++++++.+++.+..+...+ ...+
T Consensus 75 ~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~ 148 (261)
T PRK14263 75 QDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR----YKGDLGDRVKHALQGAALWDEVKDKLK-VSGL 148 (261)
T ss_pred EeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC----chHHHHHHHHHHHHHcCCchhhhhhhh-CCcc
Confidence 87632 23456799999998777 5999999988765432 112334568889999998653322222 2345
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+++|++|+|||||+|||+.++..+.+.|+++. +++|||+++|++. ++.+..|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~ 217 (261)
T PRK14263 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADT 217 (261)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCE
Confidence 799999999999999999999999999999999999999999999985 4799999999986 45566676
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=300.12 Aligned_cols=190 Identities=29% Similarity=0.405 Sum_probs=155.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC-----cccceEEEeccccc-cCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDI-HIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~-~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+||||||||||+++|+|.++|. +|+|.++|.++... ..++.++|++|++. .+...||+||+.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~ 106 (275)
T PRK13639 30 MVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLN 106 (275)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHH
Confidence 47999999999999999999999987 99999999887421 12457999999863 34457999999875421
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.+. ... +....+.++++.+||.+..++.++ .||||||||++
T Consensus 107 ~~~----------~~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~-----~LS~Gq~qrv~ 147 (275)
T PRK13639 107 LGL----------SKE------------------------EVEKRVKEALKAVGMEGFENKPPH-----HLSGGQKKRVA 147 (275)
T ss_pred cCC----------CHH------------------------HHHHHHHHHHHHCCCchhhcCChh-----hCCHHHHHHHH
Confidence 110 000 011234568889999877776655 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
|||||+.+|++++|||||+|||+.++..+.+.|+++++ .+.+|++++|+.+++...||++++|++|++++.|+++++.
T Consensus 148 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK--EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999865 3677888999999999999999999999999999988763
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=287.46 Aligned_cols=166 Identities=42% Similarity=0.764 Sum_probs=138.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+++|+||||||||||+++|+|.++|....+|+|.++|.++... ..++.++|++|++.+++.+||+||+.++....
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--- 111 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--- 111 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc---
Confidence 4799999999999999999999982112399999999887543 23467999999999999999999998753210
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
.+..+..||||||||++||||
T Consensus 112 -----------------------------------------------------------~~~~~~~LS~Ge~qrl~lara 132 (202)
T cd03233 112 -----------------------------------------------------------GNEFVRGISGGERKRVSIAEA 132 (202)
T ss_pred -----------------------------------------------------------cccchhhCCHHHHHHHHHHHH
Confidence 012234599999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEec
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G 228 (1245)
|+.+|+++||||||+|||+.++..+.+.++++++..+.++++++||+.+++.+.||++++|++|++++.|
T Consensus 133 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 133 LVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999875434556666777778999999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=333.11 Aligned_cols=196 Identities=23% Similarity=0.329 Sum_probs=164.3
Q ss_pred eEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCee
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 753 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~ 753 (1245)
..++++|+++.++. ++++|+|+|++++|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEE
Confidence 36899999998741 13599999999999999999999999999999999998765 48999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000872 754 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-------RQALVGLP 823 (1245)
Q Consensus 754 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 823 (1245)
+++ ..+++.++||+|++.+++. |++||+.++. +. .++.++++++.+|+.+. .||.+|..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~----~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DI----SEEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CC----CHHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 653 4678899999999999875 9999998742 11 23447788888887653 35666654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhc
Q 000872 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAG 898 (1245)
Q Consensus 824 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~~ 898 (1245)
...||||||||++|||||+++|+||+||||||+||+.++..|.+.|+++.+ ++|+|+++|+|+ ....+|+.
T Consensus 474 -g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~i 544 (592)
T PRK10790 474 -GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTI 544 (592)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEE
Confidence 356999999999999999999999999999999999999999999998864 699999999984 45667773
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=294.24 Aligned_cols=191 Identities=26% Similarity=0.426 Sum_probs=158.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+.....+..
T Consensus 27 ~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~- 102 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVD- 102 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCC-
Confidence 47999999999999999999999987 999999998875432 2457999999999999999999998764321100
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
.. +....++++++.+||.+..++.+. .||||||||++||||+
T Consensus 103 ---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral 144 (235)
T cd03299 103 ---------KK------------------------EIERKVLEIAEMLGIDHLLNRKPE-----TLSGGEQQRVAIARAL 144 (235)
T ss_pred ---------HH------------------------HHHHHHHHHHHHcCChhHHhcCcc-----cCCHHHHHHHHHHHHH
Confidence 00 011224567888999877776654 5999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
+.+|++++|||||+|||+.++.++.+.|++++.. .++++++++|+.+++.+.||++++|++|++++.|+++++.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~-~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKE-FGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999998653 2567888999999999999999999999999999877653
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=302.50 Aligned_cols=190 Identities=26% Similarity=0.349 Sum_probs=156.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC----cccceEEEeccccc-cCCCCCHHHHHHHHHhcc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF----VPQRTAAYISQHDI-HIGEMTVRETLAFSARCQ 75 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~----~~~~~~~yv~Q~~~-~~~~~Tv~e~l~f~~~~~ 75 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++. .+...||.||+.|+....
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~ 114 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL 114 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc
Confidence 47999999999999999999999987 99999999887542 12467999999874 234569999999865321
Q ss_pred CCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHH
Q 000872 76 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTT 155 (1245)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~i 155 (1245)
+.. .. +..+.++++++.+||++..++.++ .||||||||++|
T Consensus 115 ~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrv~l 155 (280)
T PRK13633 115 GIP----------PE------------------------EIRERVDESLKKVGMYEYRRHAPH-----LLSGGQKQRVAI 155 (280)
T ss_pred CCC----------HH------------------------HHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHHHH
Confidence 100 00 012235678899999887777665 599999999999
Q ss_pred HHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 156 GEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 156 a~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
||||+.+|+++||||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.. ||++++|++|++++.|+++++.
T Consensus 156 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK-YGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999998653 36678888999998876 9999999999999999988764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-32 Score=301.00 Aligned_cols=201 Identities=22% Similarity=0.346 Sum_probs=158.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC--------cccceEEEeccccccCCCCCHHHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF--------VPQRTAAYISQHDIHIGEMTVRETLAFSA 72 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~--------~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~ 72 (1245)
+++|+||||||||||+++|+|.++|+...+|+|.++|.++... ..++.++|++|++.+++.+||+||+.+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 111 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA 111 (262)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhh
Confidence 4799999999999999999999987522369999999876432 11356899999999999999999998753
Q ss_pred hccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchh
Q 000872 73 RCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKR 152 (1245)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 152 (1245)
.... ... ... .... ..+.+..++++++.+||++..+..++ .||||||||
T Consensus 112 ~~~~--~~~------~~~---~~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 160 (262)
T PRK09984 112 LGST--PFW------RTC---FSWF---------------TREQKQRALQALTRVGMVHFAHQRVS-----TLSGGQQQR 160 (262)
T ss_pred cccc--cch------hhh---cccc---------------cHHHHHHHHHHHHHcCCHHHHhCCcc-----ccCHHHHHH
Confidence 2100 000 000 0000 00112345678899999877776555 599999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhh
Q 000872 153 VTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEH 232 (1245)
Q Consensus 153 v~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~ 232 (1245)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++. +++++++++|+.+++...||++++|++|++++.|++++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN-DGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred HHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998753 36788889999999999999999999999999998776
Q ss_pred H
Q 000872 233 V 233 (1245)
Q Consensus 233 ~ 233 (1245)
+
T Consensus 240 ~ 240 (262)
T PRK09984 240 F 240 (262)
T ss_pred h
Confidence 4
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=331.29 Aligned_cols=197 Identities=27% Similarity=0.418 Sum_probs=164.4
Q ss_pred eEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCee
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 753 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~ 753 (1245)
..++++|+++.++. +++.+|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 36999999998731 123599999999999999999999999999999999998664 48999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc------ccccccCCC
Q 000872 754 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL------RQALVGLPG 824 (1245)
Q Consensus 754 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~------~~~~~g~~~ 824 (1245)
.++ ..+++.++||+|+..+++ -|++||+.++. + + ..++.++++++..++.+. .||.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~----~~~~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-N----ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-c----cCHHHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 653 456788999999998876 59999997642 1 1 223457888888888754 35667654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
...||||||||++|||+|+++|+||+||||||+||+.++..+++.|++.. +++|+|+++|+++. ...+|+
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~ 542 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDR 542 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCE
Confidence 45699999999999999999999999999999999999999999999885 58999999999963 345776
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=297.25 Aligned_cols=197 Identities=23% Similarity=0.335 Sum_probs=154.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhcc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSS--LKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQ 75 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~--~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~ 75 (1245)
+++|+||||||||||+++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.+++.+||+||+.++....
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~ 110 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLN 110 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhc
Confidence 47999999999999999999998741 124999999998875422 2457999999998889999999999865321
Q ss_pred CCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHH
Q 000872 76 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTT 155 (1245)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~i 155 (1245)
.... ... +..+.++++++.+||.+..+... +..+.+||||||||++|
T Consensus 111 ~~~~--------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~l 157 (250)
T PRK14247 111 RLVK--------SKK------------------------ELQERVRWALEKAQLWDEVKDRL-DAPAGKLSGGQQQRLCI 157 (250)
T ss_pred cccC--------CHH------------------------HHHHHHHHHHHHcCCCcchhhhh-cCCcccCCHHHHHHHHH
Confidence 1000 000 01123456788888854211111 23345699999999999
Q ss_pred HHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 156 GEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 156 a~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
||||+.+|++++|||||+|||+.++..+.+.|+++++ ++++++++|+.+++.+.||++++|++|++++.|+.+++
T Consensus 158 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 158 ARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK---DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999998753 46788899999999999999999999999999998776
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=292.88 Aligned_cols=190 Identities=26% Similarity=0.383 Sum_probs=158.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+||||||||||+++|+|.++|. +|+|.++|+++.... .++.++|++|++.+++.+|++||+.+.....+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~- 103 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLP- 103 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCC-
Confidence 47999999999999999999999987 999999998875432 2457999999999888999999998765322100
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
.. .....++.+++.+||.+..++.+. .||||||||++|||||
T Consensus 104 ---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrl~laral 145 (232)
T cd03300 104 ---------KA------------------------EIKERVAEALDLVQLEGYANRKPS-----QLSGGQQQRVAIARAL 145 (232)
T ss_pred ---------HH------------------------HHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHH
Confidence 00 011234668888999877766554 5999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+.+|++++|||||+|||+.++..+.+.|++++.. .+.+|++++|+..++.+.||++++|++|++++.|+.+++
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE-LGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999998753 356777789999999999999999999999999987665
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=325.15 Aligned_cols=202 Identities=26% Similarity=0.302 Sum_probs=165.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. ++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEEC
Confidence 377888887652 23699999999999999999999999999999999998654 489999999876
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcC-CCC---CCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 755 NQE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRL-SSE---VNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 755 ~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~-~~~---~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
... ..++.++|++|+..+++.+||+|++.+...... ... ...++.+++++++++.+|+.+..+..+ +
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 432 123568999999988899999999987532110 001 122344567889999999987776654 4
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+-+..|+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~ 214 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDR 214 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 69999999999999999999999999999999999999999999999877999999999975 44455676
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-32 Score=293.20 Aligned_cols=180 Identities=22% Similarity=0.363 Sum_probs=148.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHhc-
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSARC- 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~- 74 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+|++||+.++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~ 104 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV 104 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh
Confidence 47999999999999999999999887 99999999877421 1246799999999989999999999875421
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
+.. ... +..+.++++++.+||++..+..+. .||||||||++
T Consensus 105 ~~~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ 145 (213)
T cd03262 105 KGM----------SKA------------------------EAEERALELLEKVGLADKADAYPA-----QLSGGQQQRVA 145 (213)
T ss_pred cCC----------CHH------------------------HHHHHHHHHHHHcCCHhHhhhCcc-----ccCHHHHHHHH
Confidence 100 000 011234567888899876666554 59999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcE
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQI 224 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~i 224 (1245)
|||||+.+|+++||||||+|||+.++..+.+.|+++++ .++++++++|+.+++.+.||++++|++|++
T Consensus 146 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE--EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999875 356788899999999999999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=292.64 Aligned_cols=204 Identities=23% Similarity=0.315 Sum_probs=159.5
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--C-eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR--G-YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~--~-~~~G~i~~~g 751 (1245)
.+.++|+++.+. .+.+|+|+|++|++||++||+|+||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 377888887762 23599999999999999999999999999999999997641 1 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.+... ...++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++......... ....
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 146 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLD-RNAQ 146 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhc-cChh
Confidence 87532 234567999999988776 799999987643321 11222334567888999998532111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. .+.+..|+
T Consensus 147 ~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~ 215 (251)
T PRK14251 147 AFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQ 215 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCE
Confidence 7999999999999999999999999999999999999999999999854 799999999986 44555676
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=302.58 Aligned_cols=193 Identities=24% Similarity=0.341 Sum_probs=156.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDI-HIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~-~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+||||||||||+++|+|.++|....+|+|.++|.++.... .++.++|++|++. .++..||+||+.|.....+
T Consensus 35 ~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~ 114 (282)
T PRK13640 35 WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRA 114 (282)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCC
Confidence 47999999999999999999999886112399999999875432 2357999999974 6778999999987543211
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
. ... +..+.++++++.+||.+..++.+ +.||||||||++||
T Consensus 115 ~----------~~~------------------------~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~G~~qrv~la 155 (282)
T PRK13640 115 V----------PRP------------------------EMIKIVRDVLADVGMLDYIDSEP-----ANLSGGQKQRVAIA 155 (282)
T ss_pred C----------CHH------------------------HHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHH
Confidence 0 000 01123566889999987766555 46999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
|||+.+|+++||||||+|||+.++..+.+.|+++++. .+++|++++|+.+++ ..||++++|++|++++.|+++++.
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK-NNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999998653 356778889998887 579999999999999999988763
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=295.64 Aligned_cols=204 Identities=21% Similarity=0.268 Sum_probs=158.9
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-CeeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--R-GYITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~--~-~~~~G~i~~~g 751 (1245)
.+.++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 478899987663 2359999999999999999999999999999999999642 1 13589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.+... ..+++.++|++|+..+++. |+.|++.+...... .......++.++++++.+++.+....... ....
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 163 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLH-SSAL 163 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHh-cCcc
Confidence 87642 1345679999999888874 99999987643221 11222334557788888888521111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 164 ~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~ 232 (268)
T PRK14248 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDR 232 (268)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999865 689999999986 45566676
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=293.50 Aligned_cols=200 Identities=24% Similarity=0.244 Sum_probs=158.2
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCee-
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP- 753 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~- 753 (1245)
.++++|+++.++ ++.+|+|+|++++|||++||+|+||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccc
Confidence 478888887653 23599999999999999999999999999999999998654 48999999986
Q ss_pred ----CCcc---c----ccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000872 754 ----KNQE---T----FTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQAL 819 (1245)
Q Consensus 754 ----~~~~---~----~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~ 819 (1245)
+... . .++.++|++|+.. +.+.+|+.|++.+...... .....+.++.+.++++.+++.+ ..+..
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2446899999974 5677899999876432111 1122234556789999999963 44433
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 820 ~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
...||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|++. .+.+..|+
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~ 221 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHR 221 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCE
Confidence 3469999999999999999999999999999999999999999999998764 899999999986 33345565
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-32 Score=263.09 Aligned_cols=190 Identities=21% Similarity=0.311 Sum_probs=159.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc----------------ccceEEEeccccccCCCCCH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV----------------PQRTAAYISQHDIHIGEMTV 64 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~----------------~~~~~~yv~Q~~~~~~~~Tv 64 (1245)
++.|+|.|||||||+|++|.=+..|. .|.|.+||..+.... .+.+.++|+|+..++..+||
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtv 110 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTV 110 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHH
Confidence 36899999999999999999888887 999999998763110 12357999999999999999
Q ss_pred HHHHHHHHhccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccc
Q 000872 65 RETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRG 144 (1245)
Q Consensus 65 ~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 144 (1245)
.||+.-+.. + +... ...++.+.++..|...||.+..|.+.. .
T Consensus 111 LeNViEaPv-h--------VLg~------------------------~k~ea~e~Ae~~L~kVGi~ek~~~YP~-----~ 152 (256)
T COG4598 111 LENVIEAPV-H--------VLGV------------------------SKAEAIERAEKYLAKVGIAEKADAYPA-----H 152 (256)
T ss_pred HHHHHhcch-H--------hhcC------------------------CHHHHHHHHHHHHHHhCchhhhhcCcc-----c
Confidence 999975321 1 0000 111233456778999999999887665 4
Q ss_pred cccccchhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcE
Q 000872 145 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQI 224 (1245)
Q Consensus 145 LSGGqrqRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~i 224 (1245)
|||||+||++|||||+.+|+++++|||||+|||.-.-++++.+++++. .++|++++||.+..+.+...+|+.|++|.|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe--EgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE--EGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH--hCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 999999999999999999999999999999999999999999999987 477888899999999999999999999999
Q ss_pred EEecChhhH
Q 000872 225 VYQGPLEHV 233 (1245)
Q Consensus 225 v~~G~~~~~ 233 (1245)
-++|+++++
T Consensus 231 EE~G~P~qv 239 (256)
T COG4598 231 EEEGPPEQV 239 (256)
T ss_pred cccCChHHH
Confidence 999999987
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-31 Score=291.63 Aligned_cols=204 Identities=24% Similarity=0.331 Sum_probs=158.3
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~--~~-~~~G~i~~~g 751 (1245)
.+.++|+++.+. .+.+|+|+|+++++||++||+|+||||||||+++|+|..+ +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 477888887652 2359999999999999999999999999999999999643 21 2489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.+... ..+++.++|++|+..+++ .|+.|++.+....+.. ...+..++.+.+.++.+++......... ....
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~ 147 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLH-ESAL 147 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHh-cCcc
Confidence 87632 234567999999988887 6999999876543321 1122223456777888877421111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|++. .+.+..|+
T Consensus 148 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~ 216 (252)
T PRK14255 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDK 216 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999865 589999999986 45556676
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=330.79 Aligned_cols=196 Identities=27% Similarity=0.428 Sum_probs=162.2
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++++++. .++++|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 320 ~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~I~~~g~~i 386 (529)
T TIGR02857 320 SLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP--TEGSIAVNGVPL 386 (529)
T ss_pred eEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEeh
Confidence 6899999998742 123699999999999999999999999999999999998764 489999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-------RQALVGLPG 824 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~~ 824 (1245)
++ ..+++.++||+|++.+++ .|++||+.++. + +.+ ++.++++++..++.+. .||.+|..
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~- 455 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR----P-DAS----DAEIRRALERAGLDEFVAALPQGLDTLIGEG- 455 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC----C-CCC----HHHHHHHHHHcCcHHHHHhCcccccchhccc-
Confidence 43 456788999999998886 59999997642 1 112 2346777777777643 36667654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
...||||||||++|||+|+++|++++||||||+||+.++..+.+.|+++. +++|+|+++|+++ ....+|+
T Consensus 456 g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ 525 (529)
T TIGR02857 456 GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADR 525 (529)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCE
Confidence 34699999999999999999999999999999999999999999999875 5899999999984 3456675
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=295.99 Aligned_cols=195 Identities=23% Similarity=0.313 Sum_probs=158.2
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++|+++.+.. +...+|+|+|+.|++||+++|+|+||||||||+++|+|..+ .+|+|.+||.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4778999887631 12358999999999999999999999999999999999864 379999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccC------CCC
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL------PGV 825 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~------~~~ 825 (1245)
.. ..+++.++|++|++.+++ .|++||+.+.. ... ++.+++.++.+||.+..+...+. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 345678999999998887 49999995321 111 23467888899998765554331 134
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 826 ~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..||||||||++|||+|+.+|+||+|||||+|||+.+...+++.|++.. .++|||+++|++. .+. ..|+
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dr 205 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQR 205 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCE
Confidence 5699999999999999999999999999999999999999999999875 4899999999984 343 3676
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=271.16 Aligned_cols=190 Identities=23% Similarity=0.347 Sum_probs=171.7
Q ss_pred ccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcccccceEEEEccCCCCCCCC
Q 000872 697 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYV 776 (1245)
Q Consensus 697 ~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l 776 (1245)
+.+++.+++|+||.++||+++|++|+|||||||++++|.|...+ .+|+|.++|.+.+.. .+.++||.|.+--+++.+
T Consensus 11 ~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~~~~-~~~rIGyLPEERGLy~k~ 87 (300)
T COG4152 11 SFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPLSQE-IKNRIGYLPEERGLYPKM 87 (300)
T ss_pred ccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcchhhh-hhhhcccChhhhccCccC
Confidence 34667899999999999999999999999999999999998765 489999999987653 456789999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCC
Q 000872 777 TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 856 (1245)
Q Consensus 777 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTs 856 (1245)
||.|.|.|-|.|+ +++.++..+.+...|+.+++.......+ +.||-|++|++-+-.+++++|.+++||||.|
T Consensus 88 tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlILDEPFS 159 (300)
T COG4152 88 TVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFS 159 (300)
T ss_pred cHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEecCCcc
Confidence 9999999999988 5677888888999999999998876654 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhc
Q 000872 857 GLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAG 898 (1245)
Q Consensus 857 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~~ 898 (1245)
|||+.+.+.+-+.+.+++++|.|||.++|+.. .+-++.|+.
T Consensus 160 GLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~l 200 (300)
T COG4152 160 GLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRL 200 (300)
T ss_pred CCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhh
Confidence 99999999999999999999999999999976 556778873
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=303.99 Aligned_cols=190 Identities=21% Similarity=0.336 Sum_probs=152.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCC--------CcccceEEEeccccc-cCCCCCHHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHE--------FVPQRTAAYISQHDI-HIGEMTVRETLAFS 71 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~--------~~~~~~~~yv~Q~~~-~~~~~Tv~e~l~f~ 71 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. ...++.++|++|++. .+...|++||+.|+
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 115 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG 115 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHH
Confidence 47999999999999999999999887 9999999987632 112457999999863 23346999999886
Q ss_pred HhccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc-ccccccccCccccccccccc
Q 000872 72 ARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQR 150 (1245)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqr 150 (1245)
....+. ... +....++.+++.++|+ +..++.+ +.||||||
T Consensus 116 ~~~~~~----------~~~------------------------~~~~~~~~ll~~~~L~~~~~~~~~-----~~LS~Gq~ 156 (289)
T PRK13645 116 PVNLGE----------NKQ------------------------EAYKKVPELLKLVQLPEDYVKRSP-----FELSGGQK 156 (289)
T ss_pred HHHcCC----------CHH------------------------HHHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHH
Confidence 432110 000 0012245677888985 4555444 45999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecCh
Q 000872 151 KRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230 (1245)
Q Consensus 151 qRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~ 230 (1245)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++...||++++|++|++++.|+.
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE-YKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988653 366788899999999999999999999999999998
Q ss_pred hhH
Q 000872 231 EHV 233 (1245)
Q Consensus 231 ~~~ 233 (1245)
+++
T Consensus 236 ~~~ 238 (289)
T PRK13645 236 FEI 238 (289)
T ss_pred HHH
Confidence 775
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-31 Score=322.25 Aligned_cols=203 Identities=22% Similarity=0.328 Sum_probs=163.8
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+. ++.+|+|+|+++++||++||+||||||||||+++|+|..++++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 45677777652 24699999999999999999999999999999999998654224899999998764
Q ss_pred ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCcCC
Q 000872 756 QET----FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS-EVNSKTREMFVEEVMELVELNPLR-QALVGLPGVNGLS 829 (1245)
Q Consensus 756 ~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~-~~~~g~~~~~~lS 829 (1245)
... .++.++|++|++.+++.+||.|++.+....+... ....++.+++++++++.+|+.+.. +.. ++.||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 321 2356899999998889999999998764332111 112334456788999999997653 333 34699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~ 210 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDT 210 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999878999999999975 44456676
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=278.23 Aligned_cols=152 Identities=26% Similarity=0.441 Sum_probs=133.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcc----cccceEEEEccCC---CCCCC
Q 000872 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE----TFTRISGYCEQND---IHSPY 775 (1245)
Q Consensus 703 ~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 775 (1245)
+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|+. .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP--ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 79999999999999999999999999999999998654 489999999876432 2456799999984 57788
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCC
Q 000872 776 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 855 (1245)
Q Consensus 776 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpT 855 (1245)
+|++|++.+... ||||||||++||++|+.+|++++|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999976421 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 856 SGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 856 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+|||+.++..+.+.|+++.++|+|+|+++|+++ ++.+..|+
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~ 173 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDR 173 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999998767899999999975 45555565
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=322.01 Aligned_cols=202 Identities=29% Similarity=0.363 Sum_probs=165.3
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 377888887652 23599999999999999999999999999999999998654 489999999876
Q ss_pred Cc----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 755 NQ----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 755 ~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
.. ..+++.++|++|+..+++.+||.|++.+....+........+.+++++++++.+|+.+..+..+ ..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 42 1235679999999988899999999987532111111123344567889999999986655543 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~ 209 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDA 209 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999877999999999986 44455676
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=297.15 Aligned_cols=197 Identities=21% Similarity=0.336 Sum_probs=153.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCccCCC--C---cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSS--LKASGKVTYNGHDMHE--F---VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~--~~~~G~I~~~G~~~~~--~---~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+||||||||||+++|+|.++|+ ...+|+|.++|+++.. . ..++.++|++|++.+++.+||+||+.++..
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 111 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVK 111 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHH
Confidence 47999999999999999999998762 1238999999988742 1 124579999999999999999999988653
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
.+..... .. +....++++++.+||........ +..+..||||||||+
T Consensus 112 ~~~~~~~--------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv 158 (253)
T PRK14267 112 LNGLVKS--------KK------------------------ELDERVEWALKKAALWDEVKDRL-NDYPSNLSGGQRQRL 158 (253)
T ss_pred hcCccCC--------HH------------------------HHHHHHHHHHHHcCCccchhhhh-ccChhhCCHHHHHHH
Confidence 2210000 00 00112455677777743211111 233456999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.++++++|+.+++...||++++|++|++++.|+++++
T Consensus 159 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK---EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh---CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999853 36788899999999999999999999999999998776
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=298.35 Aligned_cols=192 Identities=21% Similarity=0.262 Sum_probs=155.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccc--cCCCCCHHHHHHHHHhcc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDI--HIGEMTVRETLAFSARCQ 75 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~~~--~~~~~Tv~e~l~f~~~~~ 75 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +.+.+|+.|++.+.....
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 117 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN 117 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhc
Confidence 47999999999999999999999987 9999999988753221 246999999874 567889999998754321
Q ss_pred CCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc-ccccccccCccccccccccchhhH
Q 000872 76 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.. . ... +....++++++.+||. +..+..+ ..||||||||++
T Consensus 118 ~~---~------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~ 159 (267)
T PRK15112 118 TD---L------EPE------------------------QREKQIIETLRQVGLLPDHASYYP-----HMLAPGQKQRLG 159 (267)
T ss_pred cC---C------CHH------------------------HHHHHHHHHHHHcCCChHHHhcCc-----hhcCHHHHHHHH
Confidence 10 0 000 0112356688899994 4555444 459999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
||+||+.+|+++||||||+|||+.++..+.+.|+++++. .+++|++++|+.+++..+||++++|++|++++.|+++++.
T Consensus 160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK-QGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 999999999999999999999999999999999998653 3567888999999999999999999999999999887663
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=294.45 Aligned_cols=198 Identities=23% Similarity=0.336 Sum_probs=155.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCC--CCCCceeeEEEECCccCCCCcc----cceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKL--DSSLKASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~--~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+|||||||||||++|+|.. +|+ +|+|.++|+++..... +..++|++|++.+++.+|++||+.+....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~ 104 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNA 104 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHH
Confidence 47999999999999999999995 566 9999999988754322 23489999999999999999999875432
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcc-cccccccCccccccccccchhh
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV-CADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
........ . . + ..+....++.+++.+||++ ..+..++ .+||||||||+
T Consensus 105 ~~~~~~~~---~----------~---~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl 153 (243)
T TIGR01978 105 RRSARGEE---P----------L---D-----------LLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRN 153 (243)
T ss_pred hhcccccc---c----------c---c-----------HHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHH
Confidence 10000000 0 0 0 0011224567888999974 4554443 14999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhh-ccceEEecCCcEEEecChhh
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNL-FDDIILVSDGQIVYQGPLEH 232 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~-~D~v~vl~~G~iv~~G~~~~ 232 (1245)
+|||||+.+|++++|||||+|||+.++..+.+.|+++++ .++++++++|+.+++... ||++++|++|++++.|++++
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE--PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 999999999999999999999999999999999999864 356788899999999888 89999999999999999875
Q ss_pred HH
Q 000872 233 VE 234 (1245)
Q Consensus 233 ~~ 234 (1245)
+.
T Consensus 232 ~~ 233 (243)
T TIGR01978 232 AK 233 (243)
T ss_pred hc
Confidence 53
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=289.95 Aligned_cols=196 Identities=26% Similarity=0.404 Sum_probs=155.4
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.+.. ..+.+|+|+|+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEhH
Confidence 567787765421 123599999999999999999999999999999999998653 4899999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccccc------CCCCC
Q 000872 756 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG------LPGVN 826 (1245)
Q Consensus 756 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g------~~~~~ 826 (1245)
. ..+++.++|++|+..+++ .|+.|++.+... ... .+.++++++.+++.+..+.... .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 234567899999988776 699999875321 111 2345678888888776655431 11235
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||+++|++.. . +..|+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~-~-~~~d~ 207 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL-L-DLVDR 207 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH-H-HhCCE
Confidence 79999999999999999999999999999999999999999999998754 899999999863 3 56665
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=290.56 Aligned_cols=190 Identities=26% Similarity=0.364 Sum_probs=152.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcccceEEEeccccccC--CCCCHHHHHHHHHhccCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHI--GEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~~~~~--~~~Tv~e~l~f~~~~~~~~ 78 (1245)
+++|+|+||||||||+++|+|..+|+ +|+|.++|+++.. .++.++|++|++.++ ..+|++||+.++.... .
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~-~- 80 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH-I- 80 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhccccc-c-
Confidence 47999999999999999999999987 9999999987642 245699999998654 3489999998753210 0
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
..... ... .....++++++.+||++..++.++ .||||||||++||||
T Consensus 81 ~~~~~---~~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~lara 127 (223)
T TIGR03771 81 GWLRR---PCV-------------------------ADFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARA 127 (223)
T ss_pred ccccC---CcH-------------------------HHHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHH
Confidence 00000 000 001235668889999877766655 599999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
|+.+|+++||||||+|||+.++..+.+.|+++++ .++++++++|+.+++.+.||+++++ +|++++.|+.+++
T Consensus 128 l~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~--~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 128 LATRPSVLLLDEPFTGLDMPTQELLTELFIELAG--AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 9999999999999999999999999999998864 3667888999999999999999999 8999999988765
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=299.39 Aligned_cols=195 Identities=24% Similarity=0.396 Sum_probs=157.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++..|++||+.++.....
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~- 110 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQ- 110 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCccccc-
Confidence 47999999999999999999999887 999999998775432 23569999999998889999999986421000
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
...... .. .....++++++.+||.+..++.+. .||||||||++|||
T Consensus 111 -~~~~~~---~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lar 156 (265)
T PRK10253 111 -PLFTRW---RK-------------------------EDEEAVTKAMQATGITHLADQSVD-----TLSGGQRQRAWIAM 156 (265)
T ss_pred -ccccCC---CH-------------------------HHHHHHHHHHHHcCCHHHhcCCcc-----cCChHHHHHHHHHH
Confidence 000000 00 001234668888999876665554 59999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
|++.+|++++|||||+|||+.++..+.+.|+++++. .++++++++|+..++.++||++++|++|++++.|+++++.
T Consensus 157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999998652 3567888999999999999999999999999999987753
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=299.61 Aligned_cols=194 Identities=22% Similarity=0.332 Sum_probs=156.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|+.||+.++.... .
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~ 114 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPW-H 114 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccc-c
Confidence 47999999999999999999999887 999999998764322 2356999999988889999999998743100 0
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
..... .. ......++.+++.+||++..++.++ .||||||||++|||
T Consensus 115 -~~~~~--------------~~--------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~lar 160 (265)
T PRK10575 115 -GALGR--------------FG--------------AADREKVEEAISLVGLKPLAHRLVD-----SLSGGERQRAWIAM 160 (265)
T ss_pred -ccccC--------------CC--------------HHHHHHHHHHHHHcCCHHHhcCCcc-----cCCHHHHHHHHHHH
Confidence 00000 00 0001235668888999876776665 59999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
||+.+|+++||||||+|||+.++..+.+.|+++++. .++++++++|+.+++.+.||++++|++|++++.|+.+++
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE-RGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 999999999999999999999999999999998653 356788899999999999999999999999999987765
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-31 Score=293.42 Aligned_cols=202 Identities=21% Similarity=0.287 Sum_probs=157.9
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--C-eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR--G-YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~--~-~~~G~i~~~g 751 (1245)
.+.++|+++.+. .+.+|+|+|++|++||++||+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478888887653 23599999999999999999999999999999999996431 1 2489999999
Q ss_pred eeCC-----cccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKN-----QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~-----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.++. ...+++.++|++|+..+++ .|+.|++.+....+. .. .+.++.++++++.+++.+..+.... ....
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCcc
Confidence 8753 1234567999999988777 499999987653321 11 2233456777888887532111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~ 219 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDM 219 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999875 589999999976 55666676
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=297.27 Aligned_cols=193 Identities=27% Similarity=0.429 Sum_probs=156.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.++.....
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~- 104 (256)
T TIGR03873 29 LTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHR- 104 (256)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhh-
Confidence 47999999999999999999999987 9999999988754322 3468999999877888999999987421000
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
..+.. +. .+..+.++++++.+||.+..++.++ .||||||||++|||
T Consensus 105 -~~~~~--------------~~--------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~ 150 (256)
T TIGR03873 105 -SLWAG--------------DS--------------PHDAAVVDRALARTELSHLADRDMS-----TLSGGERQRVHVAR 150 (256)
T ss_pred -hhccC--------------CC--------------HHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHHH
Confidence 00000 00 0011234668888999876666554 59999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
|++.+|++++|||||+|||+.+...+.+.|++++. .+++|++++|+.+++...||++++|++|++++.|+.+++
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 151 ALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 99999999999999999999999999999999864 356788899999999999999999999999999987765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=293.36 Aligned_cols=204 Identities=22% Similarity=0.252 Sum_probs=157.8
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-CeeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--R-GYITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~--~-~~~~G~i~~~g 751 (1245)
.+.++|+++.+. .+.+|+|+|++|++||++||+|+||||||||+++|+|... + .+.+|+|.+||
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 478999988753 2358999999999999999999999999999999999754 1 13589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.+... ..+++.++|++|+..+++ .|++|++.+....+. ....+..++.+.++++.+++..-...... ....
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~-~~~~ 166 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLH-DNAY 166 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHh-cCcc
Confidence 87632 234567999999988777 499999988654321 11222234456777777765321111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|++. .+.+..|+
T Consensus 167 ~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~ 235 (271)
T PRK14238 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDK 235 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999865 799999999976 34455666
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=296.85 Aligned_cols=195 Identities=22% Similarity=0.327 Sum_probs=150.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD--SSLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|||||||||||++|+|..+ |....+|+|.++|+++... ..++.++|++|++.+++ .||+||+.++..
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~ 112 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLR 112 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHH
Confidence 479999999999999999999864 1002389999999887531 12457999999988887 599999998653
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
..+... .. ..+..++.+++.+||.+...... ++.++.||||||||+
T Consensus 113 ~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv 158 (253)
T PRK14242 113 VNGVKD---------KA------------------------YLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRL 158 (253)
T ss_pred HcCCCC---------HH------------------------HHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHH
Confidence 221100 00 00122445677777753211111 233456999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|+++||||||+|||+.++..+.+.|+++++ +.+|++++|+.+++...||++++|++|++++.|+++++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA---RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999843 46788899999999999999999999999999988765
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-32 Score=342.95 Aligned_cols=189 Identities=26% Similarity=0.384 Sum_probs=150.1
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 2 ~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
++|+|+||||||||+|+|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+| +.|++|||.++.. .
T Consensus 482 vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~gTI~eNi~~~~~-~--- 553 (686)
T TIGR03797 482 VAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLM-SGSIFENIAGGAP-L--- 553 (686)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccC-cccHHHHHhcCCC-C---
Confidence 7999999999999999999999988 9999999999876543 57899999998876 5699999997532 0
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
+ ..+..+..+. .+ .++.+ -.|++..||.+|+++ .+||||||||++||||
T Consensus 554 ~-------~e~i~~al~~---a~------------------l~~~i--~~lp~G~dt~ige~G-~~LSGGQrQRialARA 602 (686)
T TIGR03797 554 T-------LDEAWEAARM---AG------------------LAEDI--RAMPMGMHTVISEGG-GTLSGGQRQRLLIARA 602 (686)
T ss_pred C-------HHHHHHHHHH---cC------------------cHHHH--HhccccccccccCCC-CCCCHHHHHHHHHHHH
Confidence 0 0001110000 00 01111 136778899999765 5799999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
|+++|++++||||||+||+.+++++.+.|+++ + +|+++++|+.+.+ ..+|+|++|++|+++++|+++++.+
T Consensus 603 ll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~-~T~IiItHr~~~i-~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 603 LVRKPRILLFDEATSALDNRTQAIVSESLERL----K-VTRIVIAHRLSTI-RNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----C-CeEEEEecChHHH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999875 2 3667788887555 5699999999999999999988753
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-32 Score=260.05 Aligned_cols=186 Identities=22% Similarity=0.329 Sum_probs=156.9
Q ss_pred CcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc---ccccceEEEEccCCCCCCC
Q 000872 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPY 775 (1245)
Q Consensus 699 ~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ 775 (1245)
....+|+++|+.+++||..+|.||||||||||+++++....+ .+|++++.|.+.+. +.+|..++||.|.+.+++.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp--~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC--CCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 455799999999999999999999999999999999987654 48999999998753 5788899999999999985
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCC
Q 000872 776 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 855 (1245)
Q Consensus 776 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpT 855 (1245)
||.||+.|.-.+|... + ..+...+.++.+++.+..-+ ..+..||||||||++|+|-|..-|+||+|||||
T Consensus 92 -tVeDNlifP~~~r~rr-~----dr~aa~~llar~~l~~~~L~----k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 92 -TVEDNLIFPWQIRNRR-P----DRAAALDLLARFALPDSILT----KNITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred -chhhccccchHHhccC-C----ChHHHHHHHHHcCCchhhhc----chhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 9999999988777422 1 12335677888888764322 124579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHhhh
Q 000872 856 SGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 856 sgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|.||..+++.|-++|-++. .+.++|+-++|+|... ...+|+
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa-~rha~k 203 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQA-IRHADK 203 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHH-hhhhhe
Confidence 9999999999999998886 5689999999999743 456777
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=293.08 Aligned_cols=202 Identities=18% Similarity=0.227 Sum_probs=157.8
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~---~~~G~i~~~g 751 (1245)
.+.++|+++.+. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 20 ~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 86 (274)
T PRK14265 20 VFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRD 86 (274)
T ss_pred eEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECC
Confidence 588899987652 235999999999999999999999999999999999975321 2479999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.+... ..+++.++|++|+..+++. |+.|++.+....+. .. ...++.+++.++.+++......... ....
T Consensus 87 ~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 160 (274)
T PRK14265 87 RNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLK-EKGT 160 (274)
T ss_pred EecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhc-CCcc
Confidence 87532 2345679999999887764 99999987644321 11 1223446777888887421111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+.+..|+
T Consensus 161 ~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~ 229 (274)
T PRK14265 161 ALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADW 229 (274)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999864 799999999986 45566676
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=297.84 Aligned_cols=193 Identities=26% Similarity=0.415 Sum_probs=156.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+|+.||+.++.....
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~- 105 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWL- 105 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhh-
Confidence 47999999999999999999999887 999999998764322 23569999999888888999999987521000
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
..+.. .. .+....++++++.+||++..++.++ .||||||||++|||
T Consensus 106 -~~~~~---~~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~lar 151 (255)
T PRK11231 106 -SLWGR---LS-------------------------AEDNARVNQAMEQTRINHLADRRLT-----DLSGGQRQRAFLAM 151 (255)
T ss_pred -hhccC---CC-------------------------HHHHHHHHHHHHHcCCHHHHcCCcc-----cCCHHHHHHHHHHH
Confidence 00000 00 0001234668888999877776654 59999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
|++.+|+++||||||+|||+.++..+.+.|++++. .++++++++|+.+++.+.||++++|++|+++..|+.+++
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~--~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT--QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999999999998864 356788899999999999999999999999999987765
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=292.08 Aligned_cols=191 Identities=26% Similarity=0.416 Sum_probs=157.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~~ 79 (1245)
+++|+||||||||||+++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++..|++||+.+.....+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~-- 102 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKH-- 102 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCC--
Confidence 47899999999999999999999887 9999999988754322 35799999999989899999999876532210
Q ss_pred ccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHHH
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1245)
... .....++++++.+++.+..++.++ .||||||||++|||+|
T Consensus 103 --------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrl~laral 145 (237)
T TIGR00968 103 --------PKA------------------------KIKARVEELLELVQLEGLGDRYPN-----QLSGGQRQRVALARAL 145 (237)
T ss_pred --------CHH------------------------HHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHHHHHHHHHHH
Confidence 000 001124567888888776666554 5999999999999999
Q ss_pred hcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
+.+|++++|||||+|||+.++..+.+.|++++.. .+.++++++|+.+++.+.||++++|++|++++.|+.+++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~-~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE-VHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999987652 3567788999999999999999999999999999987763
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=290.59 Aligned_cols=198 Identities=23% Similarity=0.310 Sum_probs=156.5
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+.++++++.+. .+.+|+|+|++++|||++||+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 478888887652 2359999999999999999999999999999999999621123589999999876
Q ss_pred Cc---ccccc-eEEEEccCCCCCCCCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000872 755 NQ---ETFTR-ISGYCEQNDIHSPYVTVYESLLYSAWLRLS----SEVNSKTREMFVEEVMELVELN-PLRQALVGLPGV 825 (1245)
Q Consensus 755 ~~---~~~~~-~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~----~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 825 (1245)
.. ...++ .++|++|++.+++.+|+.|++.+....... ......+..++++++++.+|+. +..+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 43 12222 478999999999999999998775432110 0112223345678889999986 34444322
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 000872 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 889 (1245)
Q Consensus 826 ~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~ 889 (1245)
..||||||||++||++|+.+|++++|||||+|||..++..+.+.|++++++|+|||+++|++..
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~ 213 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL 213 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 2499999999999999999999999999999999999999999999987779999999999763
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-31 Score=321.17 Aligned_cols=195 Identities=21% Similarity=0.314 Sum_probs=164.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. ++.+|+|+|+++++||++||+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478889988763 23599999999999999999999999999999999998654 489999999876
Q ss_pred Ccc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000872 755 NQE---T-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830 (1245)
Q Consensus 755 ~~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg 830 (1245)
... . .++.+||++|+..+++.+||.|++.+... ...+.+++++++++.+|+.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP-------KRQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc-------cchHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 431 1 22458999999999999999999987431 11233456889999999987766654 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 831 Gerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~ 209 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADR 209 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999878999999999986 34566676
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=334.69 Aligned_cols=192 Identities=22% Similarity=0.302 Sum_probs=151.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++.. .++.++||+|++.+|+. |++|||.++...
T Consensus 369 ~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~~--- 441 (592)
T PRK10790 369 FVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRDI--- 441 (592)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCCC---
Confidence 37999999999999999999999998 999999999887654 35789999999987765 999999985310
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
+ ..+.++..+. . -.++.++ .|++..||.+|+.+. +||||||||++|||
T Consensus 442 -~-------d~~i~~a~~~---------------~------gl~~~i~--~lp~Gldt~i~e~g~-~LSGGqrQRialAR 489 (592)
T PRK10790 442 -S-------EEQVWQALET---------------V------QLAELAR--SLPDGLYTPLGEQGN-NLSVGQKQLLALAR 489 (592)
T ss_pred -C-------HHHHHHHHHH---------------c------CcHHHHH--hccccccccccCCCC-CCCHHHHHHHHHHH
Confidence 0 0001100000 0 0011111 256778999998554 69999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
||+++|+|++||||||+||+.+++.+.+.|+++.. ++|+++++|+.+. ...||+|++|++|++++.|+++++.+
T Consensus 490 aLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~---~~tvIivtHr~~~-l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 490 VLVQTPQILILDEATANIDSGTEQAIQQALAAVRE---HTTLVVIAHRLST-IVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecchHH-HHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999988753 3566667787644 55799999999999999999998853
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-32 Score=335.97 Aligned_cols=193 Identities=26% Similarity=0.417 Sum_probs=154.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
.+||+||||||||||++.|+|.++|. +|+|.+||.++++... ++.++||+|++.+|. .||+|||.++..--
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~a-- 430 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPDA-- 430 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCCC--
Confidence 37999999999999999999999987 9999999999876653 578999999888776 89999999864210
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
+ .+...++++.. ..++.+. .|++..||.||+++. +||||||||++|||
T Consensus 431 -t-~eei~~a~k~a---------------------------~~~d~I~--~lp~g~dt~vge~G~-~LSgGQrQrlaiAR 478 (567)
T COG1132 431 -T-DEEIEEALKLA---------------------------NAHEFIA--NLPDGYDTIVGERGV-NLSGGQRQRLAIAR 478 (567)
T ss_pred -C-HHHHHHHHHHh---------------------------ChHHHHH--hCcccccceecCCCc-cCCHHHHHHHHHHH
Confidence 0 00011110000 0111222 357789999996555 69999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
|++++|+||+||||||+||+.++..+.+.++++.+ ++| +++|+|..+.+.+ +|+|+||++|++++.|+++++.+
T Consensus 479 all~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT-~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 479 ALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRT-TLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCE-EEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999997653 344 4458888877776 99999999999999999999864
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=294.37 Aligned_cols=192 Identities=20% Similarity=0.337 Sum_probs=151.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSS--LKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|+||||||||+++|+|..+|. ...+|+|.++|.++... ..++.++|++|++.+++ +|++||+.|...
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~ 110 (251)
T PRK14270 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPR 110 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHH
Confidence 47999999999999999999998641 11389999999987432 12456999999988887 899999998653
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcc----cccccccCcccccccccc
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV----CADTVVGDEMLRGISGGQ 149 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~~t~vg~~~~~~LSGGq 149 (1245)
..+... .. +....++.+++.+||.+ ..+. .+..|||||
T Consensus 111 ~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~ 152 (251)
T PRK14270 111 IHGIKD---------KK------------------------ELDKIVEWALKKAALWDEVKDDLKK-----SALKLSGGQ 152 (251)
T ss_pred hcCCCc---------HH------------------------HHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCHHH
Confidence 221000 00 00122455677777742 2333 345699999
Q ss_pred chhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecC
Q 000872 150 RKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 229 (1245)
Q Consensus 150 rqRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~ 229 (1245)
|||++||||++.+|++++|||||+|||+.++.++.+.|+++++ + +++++++|+.+++.+.||++++|++|++++.|+
T Consensus 153 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (251)
T PRK14270 153 QQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNK 229 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCC
Confidence 9999999999999999999999999999999999999998864 3 577888999999999999999999999999999
Q ss_pred hhhHH
Q 000872 230 LEHVE 234 (1245)
Q Consensus 230 ~~~~~ 234 (1245)
.+++.
T Consensus 230 ~~~~~ 234 (251)
T PRK14270 230 TEKIF 234 (251)
T ss_pred HHHHh
Confidence 88763
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=296.01 Aligned_cols=192 Identities=21% Similarity=0.353 Sum_probs=152.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSS--LKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|||||||||||++|+|.++|. ...+|+|.++|+++... ..++.++|++|++.+++.+||+||+.++..
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~ 111 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLK 111 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHH
Confidence 47999999999999999999998641 01399999999876421 224579999999999999999999987653
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcc----cccccccCcccccccccc
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV----CADTVVGDEMLRGISGGQ 149 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~~t~vg~~~~~~LSGGq 149 (1245)
.... .. . .+.++.++++++.+||.+ ..+. .+.+|||||
T Consensus 112 ~~~~---~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~ 153 (258)
T PRK14241 112 LNGV---RN------K------------------------KDLDELVEKSLRGANLWNEVKDRLDK-----PGGGLSGGQ 153 (258)
T ss_pred hcCC---CC------H------------------------HHHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCHHH
Confidence 2210 00 0 001123456777888742 2333 345699999
Q ss_pred chhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEec------CCc
Q 000872 150 RKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVS------DGQ 223 (1245)
Q Consensus 150 rqRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~------~G~ 223 (1245)
|||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ ++++++++|+.+++.+.||++++|+ +|+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ---DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEecCHHHHHHhCCEEEEEecccCCCCce
Confidence 9999999999999999999999999999999999999998853 3578889999999999999999996 799
Q ss_pred EEEecChhhH
Q 000872 224 IVYQGPLEHV 233 (1245)
Q Consensus 224 iv~~G~~~~~ 233 (1245)
+++.|+++++
T Consensus 231 i~~~~~~~~~ 240 (258)
T PRK14241 231 LVEIDDTEKI 240 (258)
T ss_pred EEecCCHHHH
Confidence 9999998776
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=294.21 Aligned_cols=194 Identities=24% Similarity=0.383 Sum_probs=145.9
Q ss_pred EEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc
Q 000872 677 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 756 (1245)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~ 756 (1245)
+++|+++.+.. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehHh
Confidence 46677765421 124599999999999999999999999999999999998654 48999999987532
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCCCCC
Q 000872 757 ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRE-----MFVEEVMELV--ELNPLRQALVGLPGVN 826 (1245)
Q Consensus 757 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~-----~~v~~~l~~l--~l~~~~~~~~g~~~~~ 826 (1245)
..+++.++|++|+..+++ .||.|++.+... ........ ...++.++.+ ++....+. ..+
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGA 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCC
Confidence 234567999999987764 699999976321 11111100 0112233333 22222222 245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|++++ +|+|||+++|++.. + +..|+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~-~-~~~d~ 205 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLST-V-KNADR 205 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-HhCCE
Confidence 799999999999999999999999999999999999999999999986 48999999999963 3 34565
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=291.70 Aligned_cols=208 Identities=24% Similarity=0.299 Sum_probs=161.8
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
+.++|+++.+.... ..+ ...++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 4 l~~~nl~~~~~~~~---~~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---ccc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 67788887663100 000 00134699999999999999999999999999999999997653 4899999998754
Q ss_pred cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000872 756 QE------TFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVN 826 (1245)
Q Consensus 756 ~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 826 (1245)
.. ..++.++|++|+. .+.+..|+.|++.+..... ......+..+.++++++.+|+. +..+.. .+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 21 2456799999997 3567789999987643211 1223344556789999999996 455543 34
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++||++|+.+|++|+|||||+|||..+...+.+.|+++.++ |+|||+++|++. .+-+..|+
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~ 221 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQR 221 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCE
Confidence 69999999999999999999999999999999999999999999998764 899999999985 44455566
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=340.27 Aligned_cols=195 Identities=27% Similarity=0.358 Sum_probs=161.1
Q ss_pred eEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCee
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 753 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~ 753 (1245)
..++++|++|+++. .++.+|+|+|++|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 36899999998742 124699999999999999999999999999999999998664 48999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000872 754 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-------RQALVGLP 823 (1245)
Q Consensus 754 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 823 (1245)
.++ ..+++.++||+|++.++. -|++||+.+.. .+.+ ++.++++++..++.+. .||.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 643 467889999999998885 59999997531 1122 2346677777776543 46667754
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 824 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..+||||||||++|||+|+++|+||+||||||+||+.++..+.+.|++ .++|+|+++|+++ ....+|+
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~ 680 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDE 680 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCE
Confidence 457999999999999999999999999999999999999999999986 4899999999985 3455776
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=293.81 Aligned_cols=196 Identities=20% Similarity=0.316 Sum_probs=153.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD--SSLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|+||||||||+++|+|.++ |....+|+|.++|+++... ..++.++|++|++.+++.+|++||+.++..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 111 (252)
T PRK14256 32 VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYK 111 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHH
Confidence 479999999999999999999985 3112389999999887431 224679999999999999999999987543
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
..+. .+ .. +.+..++++++.+|+.+...... +..+..||||||||+
T Consensus 112 ~~~~---~~------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrl 157 (252)
T PRK14256 112 LNGR---VN------RS------------------------EADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQQQRL 157 (252)
T ss_pred hcCC---CC------HH------------------------HHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHHHHHHH
Confidence 2110 00 00 00123456777788754211111 123446999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|++++|||||+|||+.++..+.+.|+++++ +++|++++|+.+++.++||++++|++|++++.|+.+++
T Consensus 158 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~---~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 158 CIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE---KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999864 35778899999999999999999999999999998776
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=296.82 Aligned_cols=196 Identities=21% Similarity=0.346 Sum_probs=152.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSS--LKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|||||||||||++|+|..+|. ...+|+|.++|+++... ..++.++|++|++.+++. ||+||+.++..
T Consensus 47 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~ 125 (267)
T PRK14235 47 VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPR 125 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHH
Confidence 47999999999999999999998741 01399999999887531 124579999999887874 99999998653
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
.++... ... +....++++++.+||.+...... +..++.||||||||+
T Consensus 126 ~~~~~~--------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv 172 (267)
T PRK14235 126 IHGLAR--------SKA------------------------ELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQRL 172 (267)
T ss_pred hccccc--------chH------------------------HHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHH
Confidence 221000 000 00123456788888864211111 123446999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.+|++++|+.+++...||++++|++|+++..|+.+++
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~---~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ---NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc---CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998853 35778899999999999999999999999999987765
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=292.94 Aligned_cols=187 Identities=24% Similarity=0.376 Sum_probs=153.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+++|+||||||||||+++|+|..+ . +|+|.++|+++..... ++.++|++|++.+++.+|++||+.+......
T Consensus 24 i~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~- 98 (248)
T PRK03695 24 ILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKT- 98 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCC-
Confidence 479999999999999999999974 3 8999999988754332 3458999999888889999999987521100
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
... +....++++++.+||.+..++.++ .||||||||++||+
T Consensus 99 ----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~ 139 (248)
T PRK03695 99 ----------RTE------------------------AVASALNEVAEALGLDDKLGRSVN-----QLSGGEWQRVRLAA 139 (248)
T ss_pred ----------CcH------------------------HHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHH
Confidence 000 011235668888999877666554 59999999999999
Q ss_pred HHhc-------CCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecCh
Q 000872 158 MLVG-------PAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230 (1245)
Q Consensus 158 al~~-------~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~ 230 (1245)
||+. +|+++||||||+|||+.++..+.+.|+++++ .++++++++|+.+++..+||++++|++|++++.|+.
T Consensus 140 al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 217 (248)
T PRK03695 140 VVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ--QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRR 217 (248)
T ss_pred HHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9997 6799999999999999999999999999864 356788899999999999999999999999999987
Q ss_pred hhH
Q 000872 231 EHV 233 (1245)
Q Consensus 231 ~~~ 233 (1245)
+++
T Consensus 218 ~~~ 220 (248)
T PRK03695 218 DEV 220 (248)
T ss_pred HHH
Confidence 765
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=335.91 Aligned_cols=195 Identities=26% Similarity=0.392 Sum_probs=159.1
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++++++.. +++++|+|+|++|+|||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 478 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i 545 (711)
T TIGR00958 478 LIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVPL 545 (711)
T ss_pred eEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEH
Confidence 68999999987421 124699999999999999999999999999999999998764 489999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-------RQALVGLPG 824 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~~ 824 (1245)
++ ..+++.++||+|++.++. -|++||+.++. + +.+ ++.++++++..++.+. .||.+|..
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~- 614 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL----T-DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK- 614 (711)
T ss_pred HhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC----C-CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC-
Confidence 43 456788999999998875 69999997642 1 112 3446777777777543 46667754
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..+||||||||++|||+|+++|+||+||||||+||++++..+.+ .. ..+++|+|+++|+++ ..+.+|+
T Consensus 615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~ 682 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQ 682 (711)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCE
Confidence 35699999999999999999999999999999999999999988 22 235899999999985 3466776
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=304.08 Aligned_cols=202 Identities=18% Similarity=0.214 Sum_probs=156.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC-CceeeEEEECCccCCCCcc-------cceEEEeccccc--cCCCCCHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSS-LKASGKVTYNGHDMHEFVP-------QRTAAYISQHDI--HIGEMTVRETLAF 70 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~-~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~~~--~~~~~Tv~e~l~f 70 (1245)
+++|+|+||||||||+++|+|.+++. ...+|+|.++|+++..... ++.++||+|++. +.+.+||.+++.+
T Consensus 35 ~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~ 114 (330)
T PRK15093 35 IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQ 114 (330)
T ss_pred EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHH
Confidence 47999999999999999999998631 1248999999998754322 246999999875 6788999999976
Q ss_pred HHhccCC-CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCcccccccccc
Q 000872 71 SARCQGV-GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQ 149 (1245)
Q Consensus 71 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 149 (1245)
....... +.++. .. .+....+.++++.+||.+..+ .-+..+..|||||
T Consensus 115 ~~~~~~~~~~~~~------~~-----------------------~~~~~~~~~~L~~~gL~~~~~--~~~~~p~~LSgG~ 163 (330)
T PRK15093 115 NIPGWTYKGRWWQ------RF-----------------------GWRKRRAIELLHRVGIKDHKD--AMRSFPYELTEGE 163 (330)
T ss_pred HHHhhhccccccc------cH-----------------------HHHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHH
Confidence 4321100 00000 00 001224567899999975321 1123345699999
Q ss_pred chhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecC
Q 000872 150 RKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 229 (1245)
Q Consensus 150 rqRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~ 229 (1245)
||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+. .+.++++++|+...+..++|+|++|++|+|++.|+
T Consensus 164 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~ 242 (330)
T PRK15093 164 CQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN-NNTTILLISHDLQMLSQWADKINVLYCGQTVETAP 242 (330)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999998753 36688889999999999999999999999999999
Q ss_pred hhhHH
Q 000872 230 LEHVE 234 (1245)
Q Consensus 230 ~~~~~ 234 (1245)
.+++.
T Consensus 243 ~~~i~ 247 (330)
T PRK15093 243 SKELV 247 (330)
T ss_pred HHHHH
Confidence 88763
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=293.12 Aligned_cols=197 Identities=19% Similarity=0.270 Sum_probs=153.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+++|+||||||||||+++|+|..+|..+.+|+|.++|+++.... .++.++|++|++.+++ .|++||+.++...++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~ 108 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM 108 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc
Confidence 47999999999999999999997531123999999999875432 2457999999988886 6999999886432210
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
.. .. ......++.+++.+||.+...... ++..+.||||||||++|||
T Consensus 109 ~~--------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~lar 155 (246)
T PRK14269 109 IK--------NK------------------------DEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCIAR 155 (246)
T ss_pred cc--------Ch------------------------HHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHHHH
Confidence 00 00 001122456788888853211111 2334569999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
||+.+|++++|||||+|||+.++..+.+.|+++.+ ++++++++|+.+++...+|++++|++|++++.|+.+++.
T Consensus 156 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 156 ALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH---NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999998753 567888999999999999999999999999999987763
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=297.20 Aligned_cols=209 Identities=29% Similarity=0.423 Sum_probs=172.3
Q ss_pred CCCccCCCCeEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeE
Q 000872 665 RGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT 744 (1245)
Q Consensus 665 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~ 744 (1245)
..+.+|.+...+..+++.+..+ ..++++|+|+||.++|||-+||+||||||||||.++|.|-..+ .+
T Consensus 324 ~~m~LP~P~g~L~Ve~l~~~PP-----------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p--~~ 390 (580)
T COG4618 324 ERMPLPAPQGALSVERLTAAPP-----------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP--TS 390 (580)
T ss_pred CCCCCCCCCceeeEeeeeecCC-----------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc--CC
Confidence 3456676777899999987431 2346899999999999999999999999999999999997664 58
Q ss_pred EEEEECCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHH-----HHHHHHHHHHHHcCCcccc
Q 000872 745 GNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSK-----TREMFVEEVMELVELNPLR 816 (1245)
Q Consensus 745 G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~-----~~~~~v~~~l~~l~l~~~~ 816 (1245)
|.|.+||.+.++ +.+-+.+||.||+-.+++. ||.||+. |+..+.+.+ .+.+.|.|++ +.+.+-.
T Consensus 391 G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIa-----Rf~~~~d~~kIieAA~lAgvHelI--l~lP~GY 462 (580)
T COG4618 391 GSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIA-----RFGEEADPEKVIEAARLAGVHELI--LRLPQGY 462 (580)
T ss_pred CcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHH-----hccccCCHHHHHHHHHHcChHHHH--HhCcCCc
Confidence 999999988654 5567889999999998874 9999993 333233322 2333445553 5667788
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhh
Q 000872 817 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 896 (1245)
Q Consensus 817 ~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd 896 (1245)
||.+|..+ .+||||||||+++||||-.||.+++||||-|+||.+.+..+.+.|.+..++|+|+|+++|+|+ +....|
T Consensus 463 dT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~D 539 (580)
T COG4618 463 DTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVD 539 (580)
T ss_pred cCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcc
Confidence 99999754 579999999999999999999999999999999999999999999999989999999999996 556666
Q ss_pred h
Q 000872 897 A 897 (1245)
Q Consensus 897 ~ 897 (1245)
+
T Consensus 540 k 540 (580)
T COG4618 540 K 540 (580)
T ss_pred e
Confidence 5
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-32 Score=266.90 Aligned_cols=194 Identities=24% Similarity=0.385 Sum_probs=164.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
+|+++|||||||||||.+++.+++++ +|+|+++|.++..... .+.++.+.|+...-..+||+|-+.||.--..-
T Consensus 29 iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSq 105 (252)
T COG4604 29 ITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQ 105 (252)
T ss_pred eeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccC
Confidence 58999999999999999999999987 9999999999876654 36688899999888899999999997421110
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHH
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1245)
.+ + ..+.+..+++.++.+.|++..|..+ .+||||||||.-||+
T Consensus 106 -GR---------l----------------------t~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAM 148 (252)
T COG4604 106 -GR---------L----------------------TKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAM 148 (252)
T ss_pred -CC---------C----------------------chHHHHHHHHHHHHhcccchHHHhH-----Hhcccchhhhhhhhe
Confidence 00 0 0112345778899999988877555 469999999999999
Q ss_pred HHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
.++++.+.++||||.+.||...+.++++.|+++++..+++ |+++.|+...+..++|+|+-|++|+++.+|+++++.+
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Kt-iviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKT-IVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCe-EEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 9999999999999999999999999999999999987655 5557899999999999999999999999999998753
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-31 Score=275.24 Aligned_cols=147 Identities=30% Similarity=0.460 Sum_probs=129.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVT 777 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lt 777 (1245)
+.+++++|+++++||+++|+||||||||||+++|+|..++ .+|+|.+||.+... ..+++.++|++|+..+++ .|
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADISQWDPNELGDHVGYLPQDDELFS-GS 91 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEEcccCCHHHHHhheEEECCCCcccc-Cc
Confidence 3599999999999999999999999999999999998654 48999999987643 234567899999987776 49
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCC
Q 000872 778 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 857 (1245)
Q Consensus 778 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsg 857 (1245)
++|++ ||||||||++||++|+.+|++++|||||+|
T Consensus 92 v~~~l---------------------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~ 126 (173)
T cd03246 92 IAENI---------------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSH 126 (173)
T ss_pred HHHHC---------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 98876 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 858 LDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 858 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||+.++..+.+.|++++++|+|||+++|++. .+ +..|+
T Consensus 127 LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~ 164 (173)
T cd03246 127 LDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADR 164 (173)
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCE
Confidence 9999999999999998777999999999985 33 45565
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=289.07 Aligned_cols=205 Identities=21% Similarity=0.282 Sum_probs=158.6
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--e--eEEEEEEC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG--Y--ITGNITIS 750 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~--~--~~G~i~~~ 750 (1245)
.+.++++++++. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|...+. . +.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 377888877652 346999999999999999999999999999999999975432 1 23666666
Q ss_pred CeeCC---cccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000872 751 GYPKN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 827 (1245)
Q Consensus 751 g~~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 827 (1245)
|.+.. ...+++.++|++|++.+++.+|++|++.+...... ....++..+.++++++.+++.+........ ....
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 153 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNS-PASQ 153 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcC-Cccc
Confidence 65542 12346678999999998889999999988654321 112334445688999999996421111111 2357
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 828 lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||||++|||+|+.+|++++|||||+|||..+...+.+.|+++.+ ++|||+++|++. .+-+..|+
T Consensus 154 LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~ 221 (257)
T PRK14246 154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADY 221 (257)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999998864 699999999985 45556676
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=289.44 Aligned_cols=204 Identities=22% Similarity=0.291 Sum_probs=158.9
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-CeeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--R-GYITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~--~-~~~~G~i~~~g 751 (1245)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.+||
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 467888877652 2359999999999999999999999999999999999643 1 12589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.+... ...++.++|++|+..+++. |+.|++.+...... ....+..++++.+.++.+|+.+....... ....
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLD-KSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcc
Confidence 87642 2345679999999888875 99999987643221 11223345667888999988542211221 2245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.||||||||++|||+|+.+|++++|||||+|||..+...+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~ 214 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKY 214 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCE
Confidence 7999999999999999999999999999999999999999999999864 899999999985 44444444
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=294.27 Aligned_cols=195 Identities=17% Similarity=0.272 Sum_probs=152.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCC---CCCCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGK---LDSSLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSA 72 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~---~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~ 72 (1245)
+++|+||||||||||+++|+|. .+|. ..+|+|.++|.++... ..++.++|++|++.+++ .|++||+.++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~ 108 (250)
T PRK14245 31 VVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGL 108 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHH
Confidence 4799999999999999999996 3331 2389999999987532 12456999999988776 69999998765
Q ss_pred hccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchh
Q 000872 73 RCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKR 152 (1245)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 152 (1245)
...+... .+ ..+..++++++.+||.+...+.. +..+..||||||||
T Consensus 109 ~~~~~~~----------~~-----------------------~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qr 154 (250)
T PRK14245 109 RVNGVKD----------NA-----------------------FIRQRVEETLKGAALWDEVKDKL-KESAFALSGGQQQR 154 (250)
T ss_pred HHcCCCc----------HH-----------------------HHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHHHHH
Confidence 3221000 00 00123456788888864321111 13345699999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhh
Q 000872 153 VTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEH 232 (1245)
Q Consensus 153 v~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~ 232 (1245)
++|||||+.+|+++||||||+|||+.++..+.+.|+++.+ +++|++++|+.+++.+.||++++|++|++++.|++++
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK---DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999842 4677889999999999999999999999999999887
Q ss_pred HH
Q 000872 233 VE 234 (1245)
Q Consensus 233 ~~ 234 (1245)
+.
T Consensus 232 ~~ 233 (250)
T PRK14245 232 IF 233 (250)
T ss_pred Hh
Confidence 63
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=336.98 Aligned_cols=197 Identities=26% Similarity=0.408 Sum_probs=163.3
Q ss_pred eEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCee
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 753 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~ 753 (1245)
..++++|++++++. ..+++|+|+|++|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 36899999998842 224699999999999999999999999999999999998664 48999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000872 754 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 823 (1245)
Q Consensus 754 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~ 823 (1245)
.++ ..+++.++||+|++.+++ -|++||+.+.. .+.+ ++.++++++..++.+ -.||.+|..
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCC----HHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 653 467889999999998886 59999997641 1122 234566677666654 346777765
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 824 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+ .+||||||||++|||+|+++|+|++||||||+||+.++..+++.|+++. +++|+|+++|+++ ..+.+|+
T Consensus 599 G-~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~ 668 (694)
T TIGR03375 599 G-RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDR 668 (694)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCE
Confidence 3 5699999999999999999999999999999999999999999999886 4899999999996 3467777
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=337.94 Aligned_cols=195 Identities=23% Similarity=0.362 Sum_probs=161.0
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++++++. ++.+|+|+|++|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.++
T Consensus 473 ~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~i 538 (708)
T TIGR01193 473 DIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFSL 538 (708)
T ss_pred cEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEEH
Confidence 6899999998731 23599999999999999999999999999999999998664 489999999986
Q ss_pred C---cccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000872 755 N---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 824 (1245)
Q Consensus 755 ~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~~ 824 (1245)
+ ...+++.+|||+|++.+++. |++||+.+... .+.+ ++.++++++..++.+ -.||.+|..
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~- 608 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK----ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEE- 608 (708)
T ss_pred HHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC----CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCC-
Confidence 4 35678889999999988864 99999986421 1222 233566666666643 346777764
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
..+||||||||++||||++++|+||+||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.+|+
T Consensus 609 G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~ 677 (708)
T TIGR01193 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDK 677 (708)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCE
Confidence 3579999999999999999999999999999999999999999999875 4899999999996 4466776
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=288.82 Aligned_cols=196 Identities=27% Similarity=0.313 Sum_probs=151.5
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++.++ ++.+|+|+|+.|++||++||+|+||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 46778877652 23599999999999999999999999999999999997421135899999998753
Q ss_pred cc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHH-hcCCCC---CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000872 756 QE---T-FTRISGYCEQNDIHSPYVTVYESLLYSAW-LRLSSE---VNSKTREMFVEEVMELVELN-PLRQALVGLPGVN 826 (1245)
Q Consensus 756 ~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-lr~~~~---~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 826 (1245)
.. . .++.++|++|+..+++.+|+.+++.+... ++.... ....+.++.+++.++.+++. +..+..+ .+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 21 1 23468999999888888887776643211 111000 11223345678888999984 3444332 12
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 827 ~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
.||||||||++|||+|+.+|++|+|||||+|||..++..+.+.|+++++.|+|||+++|++.
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 59999999999999999999999999999999999999999999998777899999999976
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=306.10 Aligned_cols=192 Identities=32% Similarity=0.415 Sum_probs=158.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC-----cccceEEEecccc--ccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-----VPQRTAAYISQHD--IHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~--~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|+||||||||.++|+|+.+|+ +|+|.++|.+.... ..++.+-+++||| .+.|.+||+++|.....
T Consensus 319 ~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~ 395 (539)
T COG1123 319 TLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLR 395 (539)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHh
Confidence 47999999999999999999999997 99999999872111 1124556666664 68899999999987665
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
.+.... ..+.+++++++++..||+.. ..++.+..||||||||+
T Consensus 396 ~~~~~~---------------------------------~~~~~~rv~~ll~~VgL~~~----~l~ryP~elSGGQrQRv 438 (539)
T COG1123 396 IHGGGS---------------------------------GAERRARVAELLELVGLPPE----FLDRYPHELSGGQRQRV 438 (539)
T ss_pred hhcccc---------------------------------hHHHHHHHHHHHHHcCCCHH----HHhcCchhcCcchhHHH
Confidence 432110 01122357788999999852 33456667999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|+++++|||||+||+.++.++.+.|+++.++. +.+.+.|+||...+...||||+||++|+|++.|+.+++
T Consensus 439 aIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~-g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v 517 (539)
T COG1123 439 AIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-GLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKV 517 (539)
T ss_pred HHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999998764 67788899999999999999999999999999988877
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=335.39 Aligned_cols=193 Identities=25% Similarity=0.425 Sum_probs=151.4
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 2 ~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
++|+|+||||||||+++|+|.++|+ +|+|.+||.++++.. .++.++||||++.+|+ .|++|||.++..
T Consensus 372 ~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~----- 442 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYART----- 442 (582)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCCC-----
Confidence 7999999999999999999999988 999999999886654 3577999999988765 699999987421
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
+.++ ..+.+...+ .. ..++.++ .|++..||.+|+.+ ++||||||||++||||
T Consensus 443 ~~~~----~~~i~~al~---------------~~------~l~~~i~--~lp~Gldt~ig~~g-~~LSGGqrQRi~LARa 494 (582)
T PRK11176 443 EQYS----REQIEEAAR---------------MA------YAMDFIN--KMDNGLDTVIGENG-VLLSGGQRQRIAIARA 494 (582)
T ss_pred CCCC----HHHHHHHHH---------------Hh------CcHHHHH--hcccccCceeCCCC-CcCCHHHHHHHHHHHH
Confidence 0000 000000000 00 0011111 26778899999865 5699999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
|+++|++++||||||+||+.++..+.+.|+++.. ++|+++++|+.+ ..+.||+|++|++|++++.|+++++.+
T Consensus 495 ll~~~~ililDEptsaLD~~t~~~i~~~l~~~~~---~~tvI~VtHr~~-~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 495 LLRDSPILILDEATSALDTESERAIQAALDELQK---NRTSLVIAHRLS-TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC---CCEEEEEecchH-HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999988643 456677888874 556799999999999999999988753
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-31 Score=291.77 Aligned_cols=192 Identities=23% Similarity=0.259 Sum_probs=152.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCC-ceeeEEEECCccCCCCcc-cceEEEeccccc--cCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSL-KASGKVTYNGHDMHEFVP-QRTAAYISQHDI--HIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~-~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~~~--~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+||||||||||+++|+|..+|.. ..+|+|.++|+++..... ++.++||+|++. +.+..|+.+++.+.+...+
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~ 110 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG 110 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC
Confidence 479999999999999999999998710 039999999988753322 356999999974 4456799999876432211
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcc---cccccccCccccccccccchhh
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV---CADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
. . . ....++++++.+||.+ ..++.+ ..||||||||+
T Consensus 111 ~--~--------~--------------------------~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~Gq~qrv 149 (254)
T PRK10418 111 K--P--------A--------------------------DDATLTAALEAVGLENAARVLKLYP-----FEMSGGMLQRM 149 (254)
T ss_pred C--C--------h--------------------------HHHHHHHHHHHcCCCChhhhhhcCC-----cccCHHHHHHH
Confidence 0 0 0 0123456788888875 234433 46999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.+.+|++++|++|++++.|+.+++
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999998653 366788899999999999999999999999999998776
Q ss_pred H
Q 000872 234 E 234 (1245)
Q Consensus 234 ~ 234 (1245)
.
T Consensus 229 ~ 229 (254)
T PRK10418 229 F 229 (254)
T ss_pred h
Confidence 3
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=294.41 Aligned_cols=206 Identities=25% Similarity=0.320 Sum_probs=160.8
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEEECC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR---GYITGNITISG 751 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~---~~~~G~i~~~g 751 (1245)
.+.++|+++.+. .+.+|+++|++|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 578899987653 23599999999999999999999999999999999997542 13589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC---------CCC-HHHHHHHHHHHHHHcCCcccc
Q 000872 752 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS---------EVN-SKTREMFVEEVMELVELNPLR 816 (1245)
Q Consensus 752 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~---------~~~-~~~~~~~v~~~l~~l~l~~~~ 816 (1245)
.++.. ...++.++|++|+..+++ .||+|++.+....+... ... .+..++.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87642 134567999999988777 59999998865432100 011 123345678899999885322
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhh
Q 000872 817 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 896 (1245)
Q Consensus 817 ~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd 896 (1245)
+.... ...+.||||||||++||++|+.+|+||+|||||+|||..++..+.+.|+++++ ++|||+++|++. .+.+..|
T Consensus 191 ~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 22222 22457999999999999999999999999999999999999999999999876 589999999986 3445666
Q ss_pred h
Q 000872 897 A 897 (1245)
Q Consensus 897 ~ 897 (1245)
+
T Consensus 268 ~ 268 (305)
T PRK14264 268 Q 268 (305)
T ss_pred E
Confidence 5
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=288.73 Aligned_cols=200 Identities=26% Similarity=0.279 Sum_probs=156.5
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCee-
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP- 753 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~- 753 (1245)
.+.++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccc
Confidence 367888887652 23589999999999999999999999999999999998654 48999999975
Q ss_pred ----CCc---c----cccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000872 754 ----KNQ---E----TFTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQAL 819 (1245)
Q Consensus 754 ----~~~---~----~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~ 819 (1245)
... . ..++.++|++|++. ..+.+|+.|++.+..... . .....+.++.++++++.+|+.+ ..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 322 1 12346899999874 345679999986542211 1 1111234466789999999963 44443
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 820 ~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. .+.+..|+
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~ 218 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQR 218 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 3569999999999999999999999999999999999999999999998654 899999999975 44455565
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=287.82 Aligned_cols=184 Identities=23% Similarity=0.333 Sum_probs=151.8
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
-++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCc--
Confidence 367888887653 23599999999999999999999999999999999998654 4899999872
Q ss_pred CcccccceEEEEccCCCCCCC--CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000872 755 NQETFTRISGYCEQNDIHSPY--VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 832 (1245)
Q Consensus 755 ~~~~~~~~~~~v~q~~~~~~~--ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGe 832 (1245)
..++|++|+..+.+. .|+.|++.+. ... .++.+.++++.+|+.+..+..+ +.|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~----~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGT----KKEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------ccc----cHHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 358999999877665 4777776431 111 1234688999999988766543 4699999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000872 833 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 833 rqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~ 190 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDE 190 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998765 899999999986 45556676
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=294.24 Aligned_cols=195 Identities=19% Similarity=0.321 Sum_probs=151.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCC--CCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDS--SLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~--~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+||||||||||+++|+|.++| ....+|+|.++|+++... ..++.++|++|++.+++. ||+||+.+...
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~ 118 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPR 118 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHH
Confidence 4799999999999999999999863 212489999999987421 124579999999888875 99999987643
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
..+... .. +....++++++.+|+.+...... +..+++||||||||+
T Consensus 119 ~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~qrv 164 (259)
T PRK14274 119 IHGTKN---------KK------------------------KLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQRL 164 (259)
T ss_pred hcCCCC---------HH------------------------HHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHH
Confidence 221000 00 00122455677777753211111 233456999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||+|+.+|+++||||||+|||+.++..+.+.|++++. +.++++++|+.+++.+.||++++|++|+++.+|+++++
T Consensus 165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE---KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999998853 45778899999999999999999999999999998876
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=289.12 Aligned_cols=182 Identities=24% Similarity=0.344 Sum_probs=152.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCHH
Q 000872 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVTVY 779 (1245)
Q Consensus 703 ~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~ 779 (1245)
+|+|+|+++++||+++|+|+||||||||+++|+|..+ .+|+|.++|.+... ..+++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999763 27999999987643 23345689999998888889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh-------CCCeeEEe
Q 000872 780 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMD 852 (1245)
Q Consensus 780 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~-------~p~il~lD 852 (1245)
|++.+.... ....++..+.++++++.+|+.+..+..+ +.||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 1222334566889999999987666543 4699999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 853 EPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 853 EpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||+|||+.++..+.+.|++++++|+|||+++|++. ++-+..|+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~ 202 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADR 202 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999998777899999999986 44556665
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=257.56 Aligned_cols=183 Identities=24% Similarity=0.334 Sum_probs=155.0
Q ss_pred ccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCC-------------cc---ccc
Q 000872 697 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN-------------QE---TFT 760 (1245)
Q Consensus 697 ~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~-------------~~---~~~ 760 (1245)
+++...+||+||+..+.|+++.|+|.|||||||+|+|+.-... +..|.|.+||..+. .. ..|
T Consensus 15 ~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~R 92 (256)
T COG4598 15 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLR 92 (256)
T ss_pred hcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHH
Confidence 4566789999999999999999999999999999999986544 34899999996531 11 123
Q ss_pred ceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHH
Q 000872 761 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAV 840 (1245)
Q Consensus 761 ~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~ 840 (1245)
...|+|+|.-.++..+||.||+.-+. .+. .+.++.+..++.+..++.+|+.+.+|.... .|||||+||++|||
T Consensus 93 s~L~mVFQ~FNLWsHmtvLeNViEaP-vhV-Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~-----~LSGGQQQR~aIAR 165 (256)
T COG4598 93 TRLGMVFQHFNLWSHMTVLENVIEAP-VHV-LGVSKAEAIERAEKYLAKVGIAEKADAYPA-----HLSGGQQQRVAIAR 165 (256)
T ss_pred HHhhHhhhhcchhHHHHHHHHHHhcc-hHh-hcCCHHHHHHHHHHHHHHhCchhhhhcCcc-----ccCchHHHHHHHHH
Confidence 35699999999999999999986432 111 235667777888999999999998886643 59999999999999
Q ss_pred HHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000872 841 ELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 841 ~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 888 (1245)
||+-+|+++++|||||.||++---++.+.+++++++|+|.+++||...
T Consensus 166 aLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 166 ALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred HHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 999999999999999999999999999999999999999999999643
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=319.10 Aligned_cols=189 Identities=23% Similarity=0.309 Sum_probs=156.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCcc----cccceEEEEccCCCCCCCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE----TFTRISGYCEQNDIHSPYV 776 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~l 776 (1245)
+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|+..+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 4699999999999999999999999999999999998654 489999999876421 2346789999998888899
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCC
Q 000872 777 TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 856 (1245)
Q Consensus 777 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTs 856 (1245)
||.|++.+............++..++++++++.+|+.+..+..+ ..|||||||||+||++|+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532111111123334457889999999987666553 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 857 GLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 857 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||+.+...+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~ 203 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDE 203 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 99999999999999999878999999999985 44455676
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-31 Score=296.15 Aligned_cols=190 Identities=21% Similarity=0.295 Sum_probs=155.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDI-HIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~-~~~~~Tv~e~l~f~~~~~~ 76 (1245)
+++|+|+||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++. .++..||.||+.++....+
T Consensus 35 ~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (277)
T PRK13642 35 WVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQG 111 (277)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcC
Confidence 47999999999999999999999987 999999998875422 2457999999974 5778899999987543211
Q ss_pred CCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHH
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1245)
. ... +..+.++++++.+||.+..++.+. .||||||||++||
T Consensus 112 ~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~lA 152 (277)
T PRK13642 112 I----------PRE------------------------EMIKRVDEALLAVNMLDFKTREPA-----RLSGGQKQRVAVA 152 (277)
T ss_pred C----------CHH------------------------HHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHHHHH
Confidence 0 000 011235668888899877666554 5999999999999
Q ss_pred HHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
|||+.+|+++||||||+|||+.++..+.+.|+++++. .++++++++|+.+++. .+|++++|++|++++.|+++++.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK-YQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999988653 3567788999999886 59999999999999999987763
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=294.50 Aligned_cols=196 Identities=18% Similarity=0.279 Sum_probs=151.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD--SSLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+||||||||||+++|+|.++ |....+|+|.++|.++... ..++.++|++|++.+++ .|++||+.+...
T Consensus 41 ~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~ 119 (260)
T PRK10744 41 VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVR 119 (260)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHh
Confidence 479999999999999999999986 2112389999999887421 12457999999988777 899999987643
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
.... .+ .. +....++++++.+||.+...... ++....||||||||+
T Consensus 120 ~~~~---~~------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv 165 (260)
T PRK10744 120 LFEK---LS------RA------------------------EMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQQQRL 165 (260)
T ss_pred hcCC---CC------HH------------------------HHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHHHHHH
Confidence 2100 00 00 00123456777777743111111 123446999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|+++||||||+|||+.++..+.+.|++++. +.++++++|+.+++..++|++++|++|+++..|+.+++
T Consensus 166 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 166 CIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ---DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred HHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998852 45788899999999999999999999999999988776
Q ss_pred H
Q 000872 234 E 234 (1245)
Q Consensus 234 ~ 234 (1245)
.
T Consensus 243 ~ 243 (260)
T PRK10744 243 F 243 (260)
T ss_pred H
Confidence 3
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=289.84 Aligned_cols=202 Identities=24% Similarity=0.343 Sum_probs=155.2
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++++++.++.. .++.+|+|+|+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 78 (226)
T cd03248 11 IVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP--QGGQVLLDGKPI 78 (226)
T ss_pred eEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCCch
Confidence 47889998876321 123599999999999999999999999999999999998654 489999999865
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc--CCcccccccccCCCCCcCC
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV--ELNPLRQALVGLPGVNGLS 829 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l--~l~~~~~~~~g~~~~~~lS 829 (1245)
.. ..+++.++|++|+..+++ .|++||+.+..................+++.++.+ |+.+..+.. .+.||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~LS 152 (226)
T cd03248 79 SQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK-----GSQLS 152 (226)
T ss_pred HHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC-----CCcCC
Confidence 32 234567999999987765 69999997643211000000011112356777777 666554443 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|+++. + +..|+
T Consensus 153 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~ 217 (226)
T cd03248 153 GGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQ 217 (226)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999999865 6899999999863 3 33665
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=279.89 Aligned_cols=208 Identities=22% Similarity=0.307 Sum_probs=166.1
Q ss_pred EEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-C-C-eeEEEEEECCe
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT-R-G-YITGNITISGY 752 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~-~-~-~~~G~i~~~g~ 752 (1245)
++.+|++.++... .+...+++||||++++||++||+|.|||||||+.++|.|..+ + + ..+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 4677887776532 123469999999999999999999999999999999999775 2 3 46789999998
Q ss_pred eCC---ccc----ccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHcCCcccccccccC
Q 000872 753 PKN---QET----FTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEV-NSKTREMFVEEVMELVELNPLRQALVGL 822 (1245)
Q Consensus 753 ~~~---~~~----~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~lr~~~~~-~~~~~~~~v~~~l~~l~l~~~~~~~~g~ 822 (1245)
++- ++. +.+.+++++|++. +.|.+||.+.+.=...... .. .+++..+++.++++.+|+.+-.... +
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~--~ 148 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRL--K 148 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHH--h
Confidence 642 221 2357999999965 6788999888765544322 22 3556677889999999998753222 2
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhh
Q 000872 823 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 823 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.....|||||||||.||.||+.+|++|+.||||++||...+.+|++.|+++.+ .|.|+|++|||.. -+.+..|+
T Consensus 149 ~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDr 223 (316)
T COG0444 149 SYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADR 223 (316)
T ss_pred hCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcce
Confidence 23467999999999999999999999999999999999999999999999986 5999999999986 45667777
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=328.82 Aligned_cols=186 Identities=25% Similarity=0.408 Sum_probs=151.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCcc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~ 77 (1245)
.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+++ .|++||+.++..-
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~--- 440 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAAPN--- 440 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCCCc---
Confidence 37999999999999999999999988 9999999998876543 567999999988765 6999999875310
Q ss_pred CCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCC------cccccccccCccccccccccch
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDL------DVCADTVVGDEMLRGISGGQRK 151 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~~t~vg~~~~~~LSGGqrq 151 (1245)
... +.+++.++..|+ ++..||.+|+++. +|||||||
T Consensus 441 ---------~~~----------------------------~~i~~al~~~~l~~~i~~p~GldT~vge~g~-~LSgGqrq 482 (574)
T PRK11160 441 ---------ASD----------------------------EALIEVLQQVGLEKLLEDDKGLNAWLGEGGR-QLSGGEQR 482 (574)
T ss_pred ---------cCH----------------------------HHHHHHHHHcCCHHHHcCccccCchhcCCCC-CCCHHHHH
Confidence 000 001122222222 5678999997644 69999999
Q ss_pred hhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChh
Q 000872 152 RVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231 (1245)
Q Consensus 152 Rv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~ 231 (1245)
|++||||++++|++++||||||+||+.++..+.+.|+++.+ ++|+++++|+.+.+ ..||+|++|++|++++.|+++
T Consensus 483 RialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~---~~tviiitHr~~~~-~~~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ---NKTVLMITHRLTGL-EQFDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC---CCEEEEEecChhHH-HhCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999999988742 45666678887766 459999999999999999998
Q ss_pred hHHH
Q 000872 232 HVEQ 235 (1245)
Q Consensus 232 ~~~~ 235 (1245)
++.+
T Consensus 559 ~l~~ 562 (574)
T PRK11160 559 ELLA 562 (574)
T ss_pred HHHh
Confidence 8753
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=328.55 Aligned_cols=198 Identities=24% Similarity=0.342 Sum_probs=163.1
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++++++. .++++|+|+|++++|||+++|+|+||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 330 ~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~--~~G~I~i~g~~i 396 (571)
T TIGR02203 330 DVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP--DSGQILLDGHDL 396 (571)
T ss_pred eEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEeH
Confidence 6899999998742 123699999999999999999999999999999999998764 489999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-------RQALVGLPG 824 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~~ 824 (1245)
++ ..+++.++|++|++.+++ -|++||+.+.. +.+.+ +++++++++.+|+.+. .||.+|..
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~- 466 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGEN- 466 (571)
T ss_pred HhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCC-
Confidence 43 456788999999998775 59999997542 11122 3446777888877543 35667654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhc
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAG 898 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~~ 898 (1245)
.+.||||||||++|||+++++|+|++||||||+||..++..+.+.|++.+ +++|+|+++|+|+ ..+.+|+.
T Consensus 467 g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~i 537 (571)
T TIGR02203 467 GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRI 537 (571)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEE
Confidence 45799999999999999999999999999999999999999999999875 5799999999984 45677773
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-31 Score=292.34 Aligned_cols=191 Identities=23% Similarity=0.349 Sum_probs=153.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCcc-----CCCCcc-------cceEEEeccccc--cCCCCCHHH
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHD-----MHEFVP-------QRTAAYISQHDI--HIGEMTVRE 66 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~-----~~~~~~-------~~~~~yv~Q~~~--~~~~~Tv~e 66 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++|++. +.+.+|+.|
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 110 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGG 110 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHH
Confidence 47999999999999999999999987 9999999987 543221 245999999873 577789999
Q ss_pred HHHHHHhccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcc-cccccccCcccccc
Q 000872 67 TLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV-CADTVVGDEMLRGI 145 (1245)
Q Consensus 67 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~L 145 (1245)
|+.+....... . .. . +.+..++++++.+|+.+ ..++.+ ..|
T Consensus 111 ~i~~~~~~~~~--~-------~~-~-----------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 152 (258)
T PRK11701 111 NIGERLMAVGA--R-------HY-G-----------------------DIRATAGDWLERVEIDAARIDDLP-----TTF 152 (258)
T ss_pred HHHHHHHHhcc--C-------cH-H-----------------------HHHHHHHHHHHHcCCChhHHhCCC-----ccC
Confidence 99764321100 0 00 0 01123466888899864 455444 459
Q ss_pred ccccchhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEE
Q 000872 146 SGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIV 225 (1245)
Q Consensus 146 SGGqrqRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv 225 (1245)
|||||||++|||||+.+|+++||||||+|||+.+...+.+.|+++++. .+.++++++|+.+++...+|++++|++|+++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~isH~~~~~~~~~d~i~~l~~g~i~ 231 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-LGLAVVIVTHDLAVARLLAHRLLVMKQGRVV 231 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988653 3678888999999999999999999999999
Q ss_pred EecChhhH
Q 000872 226 YQGPLEHV 233 (1245)
Q Consensus 226 ~~G~~~~~ 233 (1245)
+.|+++++
T Consensus 232 ~~~~~~~~ 239 (258)
T PRK11701 232 ESGLTDQV 239 (258)
T ss_pred EeCCHHHH
Confidence 99988775
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-31 Score=291.80 Aligned_cols=196 Identities=20% Similarity=0.332 Sum_probs=150.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD--SSLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+||||||||||+++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.+++ .||+||+.++..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~ 111 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLR 111 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHH
Confidence 479999999999999999999853 4212389999999877421 22457999999988776 899999998643
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
..+.. .. . .....++.+++.+|+.+...+.. ++.+..||||||||+
T Consensus 112 ~~~~~--~~-------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv 157 (252)
T PRK14239 112 LKGIK--DK-------Q------------------------VLDEAVEKSLKGASIWDEVKDRL-HDSALGLSGGQQQRV 157 (252)
T ss_pred HcCCC--cH-------H------------------------HHHHHHHHHHHHcCCchhHHHHH-hcCcccCCHHHHHHH
Confidence 22100 00 0 00112345666777643111111 233456999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|+++||||||+|||+.++..+.+.|+++.+ ++++++++|+.+++...||++++|++|++++.|+.+++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 158 CIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD---DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh---CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998853 36788899999999999999999999999999998876
Q ss_pred H
Q 000872 234 E 234 (1245)
Q Consensus 234 ~ 234 (1245)
.
T Consensus 235 ~ 235 (252)
T PRK14239 235 F 235 (252)
T ss_pred H
Confidence 3
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-31 Score=327.11 Aligned_cols=195 Identities=26% Similarity=0.339 Sum_probs=161.3
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.++. ++.+|+|+|++++|||++||+|+||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 334 ~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~i 399 (588)
T PRK13657 334 AVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTDI 399 (588)
T ss_pred eEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEEh
Confidence 6899999998741 13599999999999999999999999999999999998764 489999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 824 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~~ 824 (1245)
++ ..+++.++||+|++.+++ -|++||+.++. + +.+ ++.++++++.+++.+ -.||.+|..
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~- 468 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR----P-DAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGER- 468 (588)
T ss_pred hhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC----C-CCC----HHHHHHHHHHhCHHHHHHhCcccccchhcCC-
Confidence 53 456788999999998875 59999997641 1 222 233566677766654 246666654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
.+.||||||||++|||+|+++|+|++||||||+||+.++..+.+.|++.. +++|||+++|+|+ ..+.+|+
T Consensus 469 g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ 538 (588)
T PRK13657 469 GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADR 538 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCE
Confidence 45699999999999999999999999999999999999999999999875 4799999999984 4577887
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-31 Score=288.82 Aligned_cols=196 Identities=25% Similarity=0.381 Sum_probs=151.2
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. +.+.+++|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeH
Confidence 467888887652 123599999999999999999999999999999999998654 489999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-c-----CCCC
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV-G-----LPGV 825 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~-g-----~~~~ 825 (1245)
.. ..+++.++|++|+..+++. |+.|++.+... ... ...+++.++.+++.+..+... | ....
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NAT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 42 2345679999999877765 99999976421 111 122344555555544333221 0 1124
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 826 ~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. +|+|||+++|++.. + +..|+
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~ 206 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADK 206 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCE
Confidence 6799999999999999999999999999999999999999999999985 58999999999863 3 34565
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=290.98 Aligned_cols=196 Identities=22% Similarity=0.369 Sum_probs=151.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSS--LKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|||||||||||++|+|..+|. ...+|+|.++|.++... ..++.++|++|++.+++ .|++||+.++..
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~ 109 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPR 109 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHH
Confidence 47999999999999999999998741 12389999999876431 12457999999988877 899999998653
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
..+... .. ..++.+++.++.+|+.+..+.. .++.+.+||||||||+
T Consensus 110 ~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 110 IHGVKS---------KH------------------------KLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGGQQQRL 155 (250)
T ss_pred HcCCCc---------HH------------------------HHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHHHHHHH
Confidence 221000 00 0011234566777775321111 1334557999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++++++++|+.+++...+|++++|++|+++..|+.+++
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE---NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc---CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999998853 36788899999999999999999999999999998776
Q ss_pred H
Q 000872 234 E 234 (1245)
Q Consensus 234 ~ 234 (1245)
.
T Consensus 233 ~ 233 (250)
T PRK14262 233 V 233 (250)
T ss_pred H
Confidence 4
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=289.62 Aligned_cols=180 Identities=27% Similarity=0.331 Sum_probs=141.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCH
Q 000872 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVTV 778 (1245)
Q Consensus 702 ~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv 778 (1245)
.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|+..+++ .|+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 589999999999999999999999999999999998654 48999999987532 234567899999988776 699
Q ss_pred HHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEE
Q 000872 779 YESLLYSAWLRLSSEVNSKTRE-----MFVEEVMELV--ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 851 (1245)
Q Consensus 779 ~e~l~~~~~lr~~~~~~~~~~~-----~~v~~~l~~l--~l~~~~~~~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~l 851 (1245)
+|++.+.... ....+.. ..+++.++.+ ++.+..+.. ...||||||||++||++|+.+|++++|
T Consensus 93 ~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 93 AENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999764321 1111111 1233444444 444433322 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 852 DEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 852 DEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
||||+|||+.+...+.+.|+++. +|+|||+++|++.. + +..|+
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~ 205 (234)
T cd03251 163 DEATSALDTESERLVQAALERLM-KNRTTFVIAHRLST-I-ENADR 205 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCE
Confidence 99999999999999999999986 48999999999963 3 33665
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-31 Score=291.33 Aligned_cols=196 Identities=19% Similarity=0.334 Sum_probs=152.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD--SSLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|+||||||||+++|+|..+ |....+|+|.++|+++... ..++.++|++|++.+++. |++||+.+...
T Consensus 33 ~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~ 111 (251)
T PRK14244 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPK 111 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHH
Confidence 479999999999999999999975 2112389999999876432 124579999999888875 99999987643
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
...... . .. +....++++++.+||.+...+.. +..+.+||||||||+
T Consensus 112 ~~~~~~--~------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 112 LHGLAK--N------KK------------------------KLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQQRL 158 (251)
T ss_pred hcCCCC--C------HH------------------------HHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHHHHH
Confidence 221000 0 00 00122456788888865322222 123456999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|+++||||||+|||+.++..+.+.|+++.+ ++++++++|+.+++.+.||++++|++|++++.|+++++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK---NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998742 56788899999999999999999999999999988766
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=323.14 Aligned_cols=197 Identities=27% Similarity=0.408 Sum_probs=158.5
Q ss_pred EEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeC
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++++++. +++++|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 316 ~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~i 382 (544)
T TIGR01842 316 HLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP--TSGSVRLDGADL 382 (544)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeh
Confidence 6899999998731 124689999999999999999999999999999999998664 489999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 824 (1245)
Q Consensus 755 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~~ 824 (1245)
.. ..+++.++||+|++.+++. |++||+.+.. .+.+++ .++++++..++.+ -.|+.+|..
T Consensus 383 ~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~- 451 (544)
T TIGR01842 383 KQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPE----KIIEAAKLAGVHELILRLPDGYDTVIGPG- 451 (544)
T ss_pred hhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHH----HHHHHHHHhChHHHHHhCccccccccCCC-
Confidence 43 3567889999999988875 9999997432 112222 2344444444432 235666654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
...||||||||++|||+|+++|++|+|||||||||+.++..+.+.|+++..+|+|+|+++|+++ ..+.+|+
T Consensus 452 g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~ 522 (544)
T TIGR01842 452 GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDK 522 (544)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCE
Confidence 4569999999999999999999999999999999999999999999988656899999999986 3466776
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=287.60 Aligned_cols=205 Identities=22% Similarity=0.255 Sum_probs=159.2
Q ss_pred eEEEEEeEEEEEecCccccccccccCcceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--C-eeEEEEEEC
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR--G-YITGNITIS 750 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~--~-~~~G~i~~~ 750 (1245)
..+.++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ + +.+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 3588999988763 23599999999999999999999999999999999997543 1 258999999
Q ss_pred CeeCC-------cccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000872 751 GYPKN-------QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 823 (1245)
Q Consensus 751 g~~~~-------~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~ 823 (1245)
|.+.+ ...+++.++|++|+..+++. |++|++.+...... .......++.++++++.+++.+....... .
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~ 157 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDRLG-D 157 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHHHh-C
Confidence 97642 12345678999999888875 99999987643321 11112234567788888887521111111 1
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 824 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
....||||||||++|||+|+.+|++++|||||+|||..+...+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 158 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~ 229 (265)
T PRK14252 158 LAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDY 229 (265)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCE
Confidence 2356999999999999999999999999999999999999999999999865 699999999985 45556676
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-31 Score=249.59 Aligned_cols=188 Identities=26% Similarity=0.359 Sum_probs=154.4
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCC---------cccceEEEeccccccCCCCCHHHHHHHHH
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF---------VPQRTAAYISQHDIHIGEMTVRETLAFSA 72 (1245)
Q Consensus 2 ~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~---------~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~ 72 (1245)
+.++||||+|||||++.|.=+..|. +|+..+.|...+-. ..++.+|+|+|+-.++|.+||.||+.-+.
T Consensus 31 lvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap 107 (242)
T COG4161 31 LVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP 107 (242)
T ss_pred EEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh
Confidence 5789999999999999998776676 99999987643211 12467999999999999999999997532
Q ss_pred hccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchh
Q 000872 73 RCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKR 152 (1245)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 152 (1245)
++ +..++ ..++.....++++.|.|.+.+|...- .|||||+||
T Consensus 108 -~k--------v~gl~------------------------~~qa~~~a~ellkrlrl~~~adr~pl-----hlsggqqqr 149 (242)
T COG4161 108 -CR--------VLGLS------------------------KDQALARAEKLLKRLRLKPYADRYPL-----HLSGGQQQR 149 (242)
T ss_pred -HH--------HhCCC------------------------HHHHHHHHHHHHHHhccccccccCce-----ecccchhhh
Confidence 11 00011 11233456779999999998885443 499999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhh
Q 000872 153 VTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEH 232 (1245)
Q Consensus 153 v~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~ 232 (1245)
|+|||||+.+|++|++||||++|||.-..++.+.+++++. .|.|-++++|..+.+.+.+.+|+-|++|+|++.|+.+.
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~--tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE--TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh--cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 9999999999999999999999999999999999999986 46677779999999999999999999999999998654
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=292.42 Aligned_cols=196 Identities=23% Similarity=0.326 Sum_probs=153.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCccCCCC----cccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSS--LKASGKVTYNGHDMHEF----VPQRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~--~~~~G~I~~~G~~~~~~----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~ 74 (1245)
+++|+||||||||||+++|+|+++|. ...+|+|.++|.++... ..++.++|++|++.+++ .|++||+.++...
T Consensus 49 ~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~ 127 (276)
T PRK14271 49 VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRA 127 (276)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHh
Confidence 47999999999999999999998751 02389999999887542 12467999999988787 8999999876432
Q ss_pred cCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhH
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1245)
.. .. ... +....++++++.+||.+..++.. +..+..||||||||++
T Consensus 128 ~~---~~------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 128 HK---LV------PRK------------------------EFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGGQQQLLC 173 (276)
T ss_pred cc---CC------CHH------------------------HHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHHHHHHHH
Confidence 10 00 000 00112345677788865332222 1334569999999999
Q ss_pred HHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHH
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 155 ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~ 234 (1245)
|||||+.+|+++||||||+|||+.++..+.+.|+++++ + .+|++++|+.+++.+.+|++++|++|++++.|+++++.
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999998864 3 57888999999999999999999999999999988764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=290.47 Aligned_cols=195 Identities=23% Similarity=0.372 Sum_probs=149.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCC--CCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDS--SLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~--~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+||||||||||+++|+|..++ ....+|+|.++|+++... ..++.++|++|++.+++ .|++||+.++..
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~ 109 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPR 109 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHH
Confidence 4799999999999999999998753 112489999999887531 12456999999988777 899999998653
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
..+... .. +.++.++++++.+++.+...... +..+..||||||||+
T Consensus 110 ~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv 155 (250)
T PRK14240 110 THGIKD---------KK------------------------KLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQRL 155 (250)
T ss_pred hcCCCC---------HH------------------------HHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHHHH
Confidence 221100 00 00122344566666542111111 123446999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++++++++|+.+++...+|++++|++|++++.|+.+++
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK---DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998843 45788899999999999999999999999999988765
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=290.30 Aligned_cols=193 Identities=23% Similarity=0.353 Sum_probs=150.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSL--KASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+||||||||||+++|+|.++|.. ..+|+|.++|.++... ..++.++|++|++.+++.+|++||+.++..
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~ 111 (252)
T PRK14272 32 VNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLK 111 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHH
Confidence 479999999999999999999987531 1379999999887531 124569999999999999999999987543
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc----ccccccccCcccccccccc
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD----VCADTVVGDEMLRGISGGQ 149 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~~t~vg~~~~~~LSGGq 149 (1245)
.... .. . + +..+.++++++.+++. +..++. ++.|||||
T Consensus 112 ~~~~---~~------~-~-----------------------~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LS~G~ 153 (252)
T PRK14272 112 LAGI---RD------R-D-----------------------HLMEVAERSLRGAALWDEVKDRLKTP-----ATGLSGGQ 153 (252)
T ss_pred hcCC---CC------H-H-----------------------HHHHHHHHHHHHcCcchhhhhhhcCC-----cccCCHHH
Confidence 2110 00 0 0 0011123344444442 223433 44699999
Q ss_pred chhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecC
Q 000872 150 RKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 229 (1245)
Q Consensus 150 rqRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~ 229 (1245)
|||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++++++++|+.+++.+.||++++|++|++++.|+
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK---VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGP 230 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998853 4678889999999999999999999999999999
Q ss_pred hhhHH
Q 000872 230 LEHVE 234 (1245)
Q Consensus 230 ~~~~~ 234 (1245)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14272 231 TDQLF 235 (252)
T ss_pred HHHHH
Confidence 87763
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=293.89 Aligned_cols=194 Identities=20% Similarity=0.310 Sum_probs=147.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSL--KASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|||||||||||++|+|.+++.. ..+|+|.++|.++... ..++.++|++|++.+++ .||+||+.+...
T Consensus 41 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~ 119 (269)
T PRK14259 41 VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGAR 119 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhh
Confidence 479999999999999999999986310 1399999999876421 12356999999998887 599999998654
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
..+. . .. .+..++++++.+++........ +..+..||||||||+
T Consensus 120 ~~~~----~------~~-------------------------~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrl 163 (269)
T PRK14259 120 INGY----T------GD-------------------------MDELVERSLRKAAVWDECKDKL-NESGYSLSGGQQQRL 163 (269)
T ss_pred hcCC----c------HH-------------------------HHHHHHHHHHHhCCcchhhhhh-CCCcccCCHHHHHHH
Confidence 3210 0 00 0011234556665532111111 233456999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecC-----------C
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSD-----------G 222 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~-----------G 222 (1245)
+|||||+.+|+++||||||+|||+.++..+.+.|+++++ +.++++++|+.+++...||++++|++ |
T Consensus 164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK---NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 999999999999999999999999999999999998853 46788899999999999999999996 6
Q ss_pred cEEEecChhhHH
Q 000872 223 QIVYQGPLEHVE 234 (1245)
Q Consensus 223 ~iv~~G~~~~~~ 234 (1245)
++++.|+++++.
T Consensus 241 ~~~~~~~~~~~~ 252 (269)
T PRK14259 241 YLVEFNETKKIF 252 (269)
T ss_pred eEEEeCCHHHHH
Confidence 689999888763
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=339.83 Aligned_cols=190 Identities=25% Similarity=0.337 Sum_probs=149.5
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCccCCCCc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 2 ~~ilG~~GsGKSTLL~~l~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~~~~~~ 78 (1245)
++|+||||||||||+++|+|.++|+ +|+|.+||.++.+.. .++.++||+|++.++ +.|++|||.++..
T Consensus 508 vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~gTi~eNi~l~~~----- 578 (710)
T TIGR03796 508 VALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLF-EGTVRDNLTLWDP----- 578 (710)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhh-hccHHHHhhCCCC-----
Confidence 7999999999999999999999988 999999999886554 367899999998866 5699999986421
Q ss_pred CccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhhHHHHH
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1245)
+ .+ ..+..+.. ... ..++.+ -.+++..||.+|+++ .+||||||||++||||
T Consensus 579 ~-~~----~~~i~~al---------------~~~------~l~~~i--~~lp~gl~t~i~e~G-~~LSGGQrQRiaLARa 629 (710)
T TIGR03796 579 T-IP----DADLVRAC---------------KDA------AIHDVI--TSRPGGYDAELAEGG-ANLSGGQRQRLEIARA 629 (710)
T ss_pred C-CC----HHHHHHHH---------------HHh------CCHHHH--HhCcCcccceeccCC-CCCCHHHHHHHHHHHH
Confidence 0 00 00000000 000 001111 136678899999765 4799999999999999
Q ss_pred HhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhHHH
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~~~ 235 (1245)
|+++|+|++||||||+||+.++..+.+.|++ .++|+++++|+.+.+ ..||+|++|++|++++.|+++++.+
T Consensus 630 ll~~p~iliLDEptS~LD~~te~~i~~~l~~-----~~~T~IiitHrl~~i-~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 630 LVRNPSILILDEATSALDPETEKIIDDNLRR-----RGCTCIIVAHRLSTI-RDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HhhCCCEEEEECccccCCHHHHHHHHHHHHh-----cCCEEEEEecCHHHH-HhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999975 145666788887655 5599999999999999999998854
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=294.70 Aligned_cols=192 Identities=20% Similarity=0.362 Sum_probs=149.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD--SSLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|||||||||||++|+|..+ |....+|+|.++|.++... ..++.++|++|++.+++. ||+||+.++..
T Consensus 67 ~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~ 145 (286)
T PRK14275 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPR 145 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHH
Confidence 479999999999999999999854 3001299999999876432 124579999999888874 99999998653
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCc----ccccccccCcccccccccc
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD----VCADTVVGDEMLRGISGGQ 149 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~~t~vg~~~~~~LSGGq 149 (1245)
..+... . . ..+..++++++.+|+. +..+. .+..|||||
T Consensus 146 ~~~~~~---------~-~-----------------------~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgGq 187 (286)
T PRK14275 146 LHGIND---------K-K-----------------------QLEEIVEKSLRKAALWDEVSDRLDK-----NALGLSGGQ 187 (286)
T ss_pred hcCCCc---------H-H-----------------------HHHHHHHHHHHHhCCccchhhHhhC-----ChhhCCHHH
Confidence 221000 0 0 0011234456666663 22333 345699999
Q ss_pred chhhHHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecC
Q 000872 150 RKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 229 (1245)
Q Consensus 150 rqRv~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~ 229 (1245)
|||++|||||+.+|+++||||||+|||+.++..+.+.|++++. +++|++++|+.+++.+.||++++|++|+++..|+
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~---~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~ 264 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG---SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAP 264 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998853 3678889999999999999999999999999999
Q ss_pred hhhHH
Q 000872 230 LEHVE 234 (1245)
Q Consensus 230 ~~~~~ 234 (1245)
.+++.
T Consensus 265 ~~~~~ 269 (286)
T PRK14275 265 TAQLF 269 (286)
T ss_pred HHHHH
Confidence 87763
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=290.41 Aligned_cols=194 Identities=20% Similarity=0.265 Sum_probs=152.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSL--KASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|+||||||||+++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++.++ .+|++||+.++..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~ 114 (261)
T PRK14263 36 ITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLR 114 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHh
Confidence 479999999999999999999997510 1389999999887431 2245699999998877 6999999998654
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
.... . . +....++++++.+||.+..+...+ ...+.||||||||+
T Consensus 115 ~~~~----~--~-----------------------------~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv 158 (261)
T PRK14263 115 LNRY----K--G-----------------------------DLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRL 158 (261)
T ss_pred hcCc----h--H-----------------------------HHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHH
Confidence 2210 0 0 001124556777777543222222 34557999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEec--------CCcEE
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVS--------DGQIV 225 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~--------~G~iv 225 (1245)
+|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++++++++|+.+++.++||++++|+ +|+++
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~---~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK---DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 999999999999999999999999999999999998842 4678889999999999999999995 89999
Q ss_pred EecChhhHH
Q 000872 226 YQGPLEHVE 234 (1245)
Q Consensus 226 ~~G~~~~~~ 234 (1245)
+.|+.+++.
T Consensus 236 ~~g~~~~~~ 244 (261)
T PRK14263 236 EMGPTAQIF 244 (261)
T ss_pred EeCCHHHHH
Confidence 999988763
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=291.17 Aligned_cols=195 Identities=21% Similarity=0.316 Sum_probs=152.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSS--LKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+++ .||+||+.++..
T Consensus 48 ~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~ 126 (267)
T PRK14237 48 ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALE 126 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHH
Confidence 47999999999999999999998641 12399999999887431 12457999999988777 699999988643
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
..+. .. .. +....++++++.++|.+..+... +..++.||||||||+
T Consensus 127 ~~~~---~~------~~------------------------~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl 172 (267)
T PRK14237 127 RAGV---KD------KK------------------------VLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRL 172 (267)
T ss_pred hcCC---CC------HH------------------------HHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHH
Confidence 2110 00 00 01123455777888754322222 234557999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.++++++|+.+++.++||++++|++|++++.|+++++
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 173 CIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK---NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998842 46788899999999999999999999999999998776
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-31 Score=289.52 Aligned_cols=181 Identities=29% Similarity=0.412 Sum_probs=140.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCC
Q 000872 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVT 777 (1245)
Q Consensus 701 ~~~L~~vs~~i~~Ge~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lt 777 (1245)
+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|+..+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 3599999999999999999999999999999999998653 48999999987532 233466999999987776 69
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCCcCCHHHHHHHHHHHHHhhCCCeeE
Q 000872 778 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA-------LVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 850 (1245)
Q Consensus 778 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~g~~~~~~lSgGerqr~~ia~~l~~~p~il~ 850 (1245)
++|++.+....+ ..+ ..++.++..++.+..+. ... ...+.||||||||++||++|+.+|++++
T Consensus 93 v~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 93 IAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred HHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceeec-cCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999997642111 111 12233333333322111 111 1245799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000872 851 MDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 851 lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~~~~~fd~ 897 (1245)
|||||+|||+.++..+.+.|+++. +|+|||+++|++.. + +..|+
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~ 206 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADL 206 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCE
Confidence 999999999999999999999986 78999999999863 3 35666
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=292.07 Aligned_cols=195 Identities=19% Similarity=0.307 Sum_probs=147.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCccCCCC-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD--SSLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ~~~ilG~~GsGKSTLL~~l~G~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~~~Tv~e~l~f~~~ 73 (1245)
+++|+||||||||||+++|+|..+ |....+|+|.++|+++... ..++.++|++|++.+++. |++||+.++..
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~ 127 (268)
T PRK14248 49 VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALK 127 (268)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHH
Confidence 479999999999999999999864 1001399999999887532 124569999999888874 99999987643
Q ss_pred ccCCCCccchhhhhhHHHHhhhcCCCchhHHHHHHHHhhccchhhhHHHHHHHcCCcccccccccCccccccccccchhh
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1245)
.... .. ... .+..++..++.+++.+...... +..+..||||||||+
T Consensus 128 ~~~~--~~-------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrl 173 (268)
T PRK14248 128 YAGE--RR-------KSV------------------------LDEIVEESLTKAALWDEVKDRL-HSSALSLSGGQQQRL 173 (268)
T ss_pred hcCC--Cc-------HHH------------------------HHHHHHHHHHHcCCCcchHHHH-hcCcccCCHHHHHHH
Confidence 2110 00 000 0112344566666642110111 233446999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCcCcChHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCcEEEecChhhH
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 ~ia~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~~~~~~~~~~ii~i~~~~~~~~~~~D~v~vl~~G~iv~~G~~~~~ 233 (1245)
+|||||+.+|+++||||||+|||+.++..+.+.|+++++ +++|++++|+.+++.+.||++++|++|++++.|+.+++
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE---EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc---CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999853 35788899999999999999999999999999988766
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1245 | ||||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 6e-08 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 9e-04 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-07 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-07 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-07 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-07 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-04 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-06 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-06 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-06 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-06 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-06 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 4e-06 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 4e-05 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-06 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 5e-06 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 6e-06 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 6e-06 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 6e-06 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-06 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 3e-05 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 4e-05 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 4e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 4e-05 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 6e-05 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 6e-05 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-04 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-04 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-04 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-04 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-04 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-04 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-04 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 6e-04 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 6e-04 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-04 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 8e-04 |
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1245 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-24 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 9e-17 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-21 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-10 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-21 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 7e-16 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-20 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 4e-12 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-20 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-12 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-07 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-05 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-18 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-11 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-06 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 9e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-17 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-10 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-17 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 5e-13 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-16 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 9e-10 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 7e-16 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-06 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-15 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 5e-15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 9e-09 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-14 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 1e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-09 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 8e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 8e-04 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-09 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 7e-04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 7e-05 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 5e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-07 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 7e-09 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 6e-05 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 9e-09 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 3e-05 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-08 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 6e-08 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 6e-04 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 9e-08 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 3e-07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-05 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 3e-07 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 5e-07 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 4e-05 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 8e-07 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-06 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 4e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-05 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 5e-06 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 5e-06 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 9e-06 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 9e-06 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 1e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 1e-04 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 2e-05 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-05 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 4e-05 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 4e-05 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 6e-05 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 4e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 1e-04 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 3e-04 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 4e-04 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 4e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 5e-04 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 5e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYP--KNQETF 759
L G+S G + L+G G+GKTT + +++ + + +G +T+ G +
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEV 86
Query: 760 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 819
++ Y + + E L + A +S E VE E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR 143
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 879
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 880 VVCTIH 885
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 9e-17
Identities = 48/248 (19%), Positives = 78/248 (31%), Gaps = 82/248 (33%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHE----------FVPQRTAAYIS 53
L+GP G+GKTT + ++ + S SG VT G ++ E ++P+ AY
Sbjct: 46 LIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY-- 100
Query: 54 QHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREG 113
M E L F A S E +
Sbjct: 101 ------RNMQGIEYLRFVAGFYA----------SSSSEIEEMV----------------- 127
Query: 114 QEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 173
+ ++ L + + S G +++ L+ +DE ++
Sbjct: 128 -------ERATEIAGL-----GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTS 175
Query: 174 GLDSSTTFHIVNSLGQFN----------HILNGTALISLLQPAPEVYNLFDDIILVSDGQ 223
GLD + L Q + H + EV L D I L+ +G
Sbjct: 176 GLDVLNAREVRKILKQASQEGLTILVSSHNM------------LEVEFLCDRIALIHNGT 223
Query: 224 IVYQGPLE 231
IV G +E
Sbjct: 224 IVETGTVE 231
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 1e-21
Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 25/195 (12%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKN 755
+ L ++ G + A++G G GK+TL+D+L G R +G I
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI------------ 62
Query: 756 QETFTRISGYCEQNDIHSPYVTVYESLLY--SAWLRLSSEVNSKTREMFVEEVMELVELN 813
E + I G+ Q +V + +L S + ++ S ++ + ++ + L
Sbjct: 63 -EVYQSI-GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV-AMQALDYLNLT 119
Query: 814 PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN- 872
L + LS QR+ + IA + + +I +DEPTS LD +V+ + +
Sbjct: 120 HLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDL 174
Query: 873 TVDTGRTVVCTIHQP 887
TVV T HQP
Sbjct: 175 AQSQNMTVVFTTHQP 189
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 54/235 (22%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
+ +LG G GK+TL+ L G GK+ ++ ++ Q
Sbjct: 33 ILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY----------QSIGFVPQFFSSPF 79
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
+V + +V + R + + +
Sbjct: 80 AYSVLD-----------------IVLMGRS-------------THINTFAKPKSHDYQVA 109
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
L L+L A +SGGQR+ + + + +DE ++ LD +
Sbjct: 110 MQALDYLNLTHLAKREFTS-----LSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 181 FHIVNSLGQFNHILNGTALISL--LQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
+++ L N T + + + + +L++ + G ++
Sbjct: 165 DIVLSLLIDLAQSQNMTVVFTTHQPNQVVAI---ANKTLLLNKQNFKF-GETRNI 215
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 3e-21
Identities = 37/186 (19%), Positives = 77/186 (41%), Gaps = 22/186 (11%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT---GNITISGYPKNQETFT 760
L ++ G + G G GKTTL+ ++ Y+ G I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVP-ITKVKG 78
Query: 761 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 820
+I + + I ++V + L A L K + + + +E VE+ L++
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK-- 130
Query: 821 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRT 879
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 880 VVCTIH 885
++ +
Sbjct: 187 IISSRE 192
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 7e-16
Identities = 34/231 (14%), Positives = 68/231 (29%), Gaps = 64/231 (27%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHE------FVPQRTAAYISQHDI 57
GP G GKTTL+ ++ L G++ YNG + + F+P+
Sbjct: 40 FHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGKIFFLPEEIIVP------ 90
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+++V + L A GV + +I
Sbjct: 91 --RKISVEDYLKAVASLYGV------------KVNKNEI--------------------- 115
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
L+ +++ + +S G +RV L+ A +D+ +D
Sbjct: 116 ---MDALESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
+ ++ S+ + + S E + D +
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISS-----REELSYCDVNENLHKYSTKIDK 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 2e-20
Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 24/192 (12%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG-RKTRGYIT-GNITISGYPKNQETFT 760
L +SG R G + L+G G+GK+TL+ +AG +G I + + +
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LA 72
Query: 761 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 820
Y Q V+ L KTR + +V + L+
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLGRST 124
Query: 821 GLPGVNGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT 873
N LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 125 -----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179
Query: 874 VDTGRTVVCTIH 885
G +V + H
Sbjct: 180 SQQGLAIVMSSH 191
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 4e-12
Identities = 43/254 (16%), Positives = 74/254 (29%), Gaps = 82/254 (32%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTA---AYISQHDI 57
+ L+GP G+GK+TL+ +AG G + + G + + + A AY+SQ
Sbjct: 28 ILHLVGPNGAGKSTLLARMAG----MTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQT 83
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
V + L + ++ +
Sbjct: 84 PPFATPVWH-----------------YLTLHQ-------HDKTR-----TELLND----- 109
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV--------TTGEMLVGPAHALFMD 169
+ L LD +SGG+ +RV T + L +D
Sbjct: 110 -----VAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAG-QLLLLD 158
Query: 170 EISTGLDSSTTFHIVNSLGQFN----------HILNGTALISLLQPAPEVYNLFDDIILV 219
E LD + + L + H LN T + L+
Sbjct: 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHA------------HRAWLL 206
Query: 220 SDGQIVYQGPLEHV 233
G+++ G E V
Sbjct: 207 KGGKMLASGRREEV 220
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 4e-20
Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 35/224 (15%)
Query: 667 MVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLV------LLNGVSGAFRPGVLTALM 720
L F +L F + D+ + R L +LN G F + +M
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 721 GVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTV 778
G G+GKTTL+ +LAG + G + +S P+ TV
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-------IAPKFPG-------TV 430
Query: 779 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTI 838
+ + + F +V++ + ++ + V LS + +R+ I
Sbjct: 431 RQLFFKKIRGQFLNP-------QFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAI 478
Query: 839 AVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVV 881
+ L I +DEP++ LD+ + + +R + +T
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 3e-12
Identities = 36/183 (19%), Positives = 71/183 (38%), Gaps = 21/183 (11%)
Query: 712 RPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNIT---ISGYPKNQETFTRISGYC 766
RPG + L+G G GK+T + +LAG + G I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 767 EQND---IHSPYV-----TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 818
E + I YV + + L ++ + V+ +++++L + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGR 878
+ LS + +R I + V + DEP+S LD + + +R+ + +
Sbjct: 218 -----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 879 TVV 881
V+
Sbjct: 273 YVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 54/270 (20%), Positives = 81/270 (30%), Gaps = 80/270 (29%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
++G G+GKTTL+ LAG L G+ +P+ + Q T
Sbjct: 383 MMGENGTGKTTLIKLLAGALKPD---EGQD----------IPKLNVSMKPQKIAPKFPGT 429
Query: 64 VRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYI 123
VR+ +F K + + TD +
Sbjct: 430 VRQ-------------------------------------LFFKKIRGQFLNPQFQTD-V 451
Query: 124 LKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHI 183
+K L +D D V +SGG+ +RV L PA +DE S LDS
Sbjct: 452 VKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIIC 506
Query: 184 VNSLGQFNHILNGTALI-----SLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFI 238
+ +F TA I + L D +I+
Sbjct: 507 SKVIRRFILHNKKTAFIVEHDFIM------ATYLADKVIVFEGIPSKNAHARAPES---- 556
Query: 239 SMGFKCPKRKGIADFLQE--VTSRKDQEQY 266
G FL+ VT R+D +
Sbjct: 557 -------LLTGCNRFLKNLNVTFRRDPNSF 579
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 45/316 (14%), Positives = 84/316 (26%), Gaps = 72/316 (22%)
Query: 2 TLLLGPPGSGKTTLMLALAGKL--------DSSLKASGKVTYNGHDMHEFVP-----QRT 48
L+G G GK+T + LAGK D + G ++ +
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIK 165
Query: 49 AAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKA 108
A Q+ +I ++ + L++L + +
Sbjct: 166 AIIKPQYVDNIP-RAIKGPVQKVGE----------LLKLRMEKSPEDV------------ 202
Query: 109 VVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 168
+K+L L+ V + +SGG+ +R G V A
Sbjct: 203 ------------KRYIKILQLE-----NVLKRDIEKLSGGELQRFAIGMSCVQEADVYMF 245
Query: 169 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPE-----VYNLFDDIILVSDGQ 223
DE S+ LD + + + E + L D + ++
Sbjct: 246 DEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICV------EHDLSVLDYLSDFVCIIYGVP 298
Query: 224 IVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFV 283
VY + + + R E R + +
Sbjct: 299 SVYGVVTLP-------ASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSAS 351
Query: 284 HAFQSFHVGRKLGDEL 299
AF + + GD +
Sbjct: 352 RAFSYPSLKKTQGDFV 367
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 2e-18
Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 35/240 (14%)
Query: 646 RNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFD-EITYSVDMPQEMKRRGVHDDKLVLL 704
RN ++ + ++ + + R + F S D E V+ P+ +K G L
Sbjct: 318 RNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF-----KL 372
Query: 705 NGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRI 762
G R G + ++G G GKTT + +LAG T G + ++T++ P+ I
Sbjct: 373 EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ------YI 426
Query: 763 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL 822
TVYE L + + + E+++ + + L V
Sbjct: 427 K--------AEYEGTVYELLS-------KIDSSKLNSNFYKTELLKPLGIIDLYDRNVE- 470
Query: 823 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVV 881
LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T +
Sbjct: 471 ----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-13
Identities = 48/212 (22%), Positives = 91/212 (42%), Gaps = 18/212 (8%)
Query: 678 FDEITYSVDMPQEMKRRGVH--DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 735
F+ I+ V++P+++ VH +L + + G++ ++G G+GKTT + +LA
Sbjct: 81 FNAISI-VNLPEQLDEDCVHRYGVNAFVLYRLPI-VKDGMVVGIVGPNGTGKTTAVKILA 138
Query: 736 GR----KTRGYITGNITISGYPKN--QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLR 789
G+ + + I + N Q F R+ + + YV + + +
Sbjct: 139 GQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG---K 195
Query: 790 LSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSII 849
+ + EEV++ +EL + + LS + +R+ IA L+
Sbjct: 196 VRELLKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFY 250
Query: 850 FMDEPTSGLDARAAAVVMRTVRNTVDTGRTVV 881
F DEP+S LD R V R +R + G+ V+
Sbjct: 251 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 4e-11
Identities = 55/268 (20%), Positives = 90/268 (33%), Gaps = 76/268 (28%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
++GP G GKTT + LAG + + GKV ++ T AY Q+ E T
Sbjct: 387 IVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL----------TVAYKPQYIKAEYEGT 433
Query: 64 VRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYI 123
V E L+ +L+ ++
Sbjct: 434 VYELLSKIDS-----------SKLNSNFYKTEL--------------------------- 455
Query: 124 LKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHI 183
LK L + D V D +SGG+ +RV L+ A +DE S LD +
Sbjct: 456 LKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 510
Query: 184 VNSLGQFNHILNGTAL-IS--LLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
++ TAL + + + + D ++V +G+ G
Sbjct: 511 SRAIRHLMEKNEKTALVVEHDV-----LMIDYVSDRLIVFEGEPGRHG---RALPPM--- 559
Query: 241 GFKCPKRKGIADFLQE--VTSRKDQEQY 266
R+G+ FL +T R+D +
Sbjct: 560 ----GMREGMNRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 40/188 (21%), Positives = 66/188 (35%), Gaps = 48/188 (25%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEM 62
++GP G+GKTT + LAG+L +L + + D I
Sbjct: 121 GIVGPNGTGKTTAVKILAGQLIPNL---CEDNDSW------------------DNVIRAF 159
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIP-DADIDVFMKAV---VREGQEANV 118
E + + + +D+ KAV VRE +
Sbjct: 160 RGNELQ---------------NYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD 204
Query: 119 IT---DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 175
+ ++K L+L+ D + +SGG+ +RV L+ AH F DE S+ L
Sbjct: 205 EVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYL 259
Query: 176 DSSTTFHI 183
D +
Sbjct: 260 DIRQRLKV 267
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-17
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 761
L G + G + ++G G GKTT + +LAG T G I ++T++ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 762 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG 821
I TVYE L + + + E+++ + + L V
Sbjct: 356 IK--------ADYEGTVYELLS-------KIDASKLNSNFYKTELLKPLGIIDLYDREV- 399
Query: 822 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTV 880
N LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 881 V 881
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-12
Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 42/208 (20%)
Query: 692 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR----KTRGYITGNI 747
R GV+ L L V + G++ ++G G+GK+T + +LAG+ + +
Sbjct: 29 HRYGVNAFVLYRLPVV----KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDG 84
Query: 748 TISGYPKN--QETFTRISGYCEQNDIH----SPYVTVYESLLYSAWLRLSSEVNSKTREM 801
I + N Q F ++ +I YV ++ K +
Sbjct: 85 VIRAFRGNELQNYFEKLKN----GEIRPVVKPQYV----------------DLIPKAVKG 124
Query: 802 FVEEVMELVELNPLRQALVGLPGVNG--------LSTEQRKRLTIAVELVANPSIIFMDE 853
V E+++ + + +V + LS + +R+ IA L+ N + F DE
Sbjct: 125 KVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDE 184
Query: 854 PTSGLDARAAAVVMRTVRNTVDTGRTVV 881
P+S LD R R +R + G++V+
Sbjct: 185 PSSYLDIRQRLNAARAIRRLSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 9e-10
Identities = 53/268 (19%), Positives = 89/268 (33%), Gaps = 76/268 (28%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
++GP G GKTT + LAG + + GK+ ++ + PQ YI E T
Sbjct: 317 IVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLT--VAYKPQ----YIKAD----YEGT 363
Query: 64 VRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYI 123
V E L+ +L+ +++ I RE
Sbjct: 364 VYELLSKIDAS-----------KLNSNFYKTELLKPLGIIDLYD---RE----------- 398
Query: 124 LKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHI 183
V +L SGG+ +RV L+ A +DE S LD +
Sbjct: 399 --VNEL----------------SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 440
Query: 184 VNSLGQFNHILNGTAL-IS--LLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
++ TAL + + + + D ++V +G+ G
Sbjct: 441 SRAIRHLMEKNEKTALVVEHDV-----LMIDYVSDRLMVFEGEPGKYGRALPPM------ 489
Query: 241 GFKCPKRKGIADFLQE--VTSRKDQEQY 266
R+G+ FL +T R+D +
Sbjct: 490 ----GMREGMNRFLASIGITFRRDPDTG 513
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-17
Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 27/230 (11%)
Query: 657 IETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVL 716
+ + K R + F ++ +++ + + + L+ +G + G +
Sbjct: 238 LPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVV-DNGEAKEGEI 296
Query: 717 TALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSP 774
++G G GKTT +L G G +T I Y K Q F +
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFP------------NY 343
Query: 775 YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834
TV + +L +S+ T F EEV + + L+ L ++ V N LS + +
Sbjct: 344 DGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392
Query: 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTI 884
+L IA L + +D+P+S LD +V + ++ + V I
Sbjct: 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-10
Identities = 48/268 (17%), Positives = 87/268 (32%), Gaps = 74/268 (27%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
+LGP G GKTT L G++ + G VT + +Y Q + T
Sbjct: 299 ILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL---------SYKPQRIFPNYDGT 346
Query: 64 VRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYI 123
V++ A ++ + +
Sbjct: 347 VQQ-------------------------------------YLENASKDALSTSSWFFEEV 369
Query: 124 LKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHI 183
K L+L ++ V D +SGG+ +++ L A +D+ S+ LD + +
Sbjct: 370 TKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIV 424
Query: 184 VNSLGQFNHILNGTAL-IS--LLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISM 240
++ + I L +++ D I+V G+ G
Sbjct: 425 AKAIKRVTRERKAVTFIIDHDL-----SIHDYIADRIIVFKGEPEKAGLATSPVTL---- 475
Query: 241 GFKCPKRKGIADFLQE--VTSRKDQEQY 266
+ G+ +FL+E VT R+D E
Sbjct: 476 ------KTGMNEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-10
Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 19/183 (10%)
Query: 712 RPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETF--TRISGY---- 765
+ + ++G G GKTT++ +LAG + N + G + + F I Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV-GKDEVLKRFRGKEIYNYFKEL 81
Query: 766 --CEQNDIHSPYVTVYESLLYSAWLR-LSSEVNSKTREMFVEEVMELVELNPLRQALVGL 822
E +H Y S + + ++++ + + +EV EL+ + L
Sbjct: 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGK---KDEVKELLNMTNLWN----- 133
Query: 823 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVC 882
N LS +RL +A L+ + D+P+S LD R + + +R + + V+
Sbjct: 134 KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIV 192
Query: 883 TIH 885
H
Sbjct: 193 VDH 195
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 3e-17
Identities = 45/256 (17%), Positives = 100/256 (39%), Gaps = 41/256 (16%)
Query: 656 TIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGV 715
+ + G+V + D+I + + +L +S G
Sbjct: 2 SSHHHHHHSSGLVPRGSHMLIQLDQIG---------RMKQ----GKTILKKISWQIAKGD 48
Query: 716 LTALMGVTGSGKTTLMDVLAGR--KTRGYITGNITISGYPKNQETFT------RISGYCE 767
L G+ G+GKTTL+++L T +G + + G + ++ I G+
Sbjct: 49 KWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGYSAETVRQHI-GFVS 103
Query: 768 QNDIHSPY---VTVYESLL--YSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL 822
+ + V + ++ + + +++ + R ++++LV ++ Q +G
Sbjct: 104 H-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVGMSAKAQQYIG- 160
Query: 823 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR--NTVDTGRTV 880
LST +++R+ IA L+ P ++ +DEP +GLD A ++ + + +
Sbjct: 161 ----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAM 216
Query: 881 VCTIHQPSIDIFEAFD 896
+ H +I F
Sbjct: 217 IYVTHFIE-EITANFS 231
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 5e-13
Identities = 51/253 (20%), Positives = 85/253 (33%), Gaps = 63/253 (24%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHE-------------FVPQRTAA 50
L G G+GKTTL+ L SG V G + FV
Sbjct: 52 LYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLE 108
Query: 51 YISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVV 110
+ V + + S + +G Y
Sbjct: 109 KFQEG------ERVIDVVI-SGAFKSIG-VYQ---------------------------- 132
Query: 111 REGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 170
E +LK++ + A +G +S G+++RV L+G L +DE
Sbjct: 133 DIDDEIRNEAHQLLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARALMGQPQVLILDE 187
Query: 171 ISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230
+ GLD +++ L + A+I + E+ F I+L+ DGQ + QG +
Sbjct: 188 PAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247
Query: 231 ------EHVEQFF 237
E++ +FF
Sbjct: 248 EDILTSENMSRFF 260
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 32/188 (17%)
Query: 713 PGVLTALMGVTGSGKTTLMDVLAG-RKTRGYIT-GNITISGYPKNQETFTRISGYCEQND 770
G ++G GSGKTTL+ ++G G I + + R S +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI----RYSTNLPEA- 83
Query: 771 IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL---RQALVGLPGVNG 827
+ VTV + + L+ E+++ ++L R+ +
Sbjct: 84 -YEIGVTVNDIVYLYEELK-------GLDRDLFLEMLKALKLGEEILRRK-------LYK 128
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQP 887
LS Q + ++ L + P I+ +DEP +DA V+ R ++ + G+ + H
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH-- 183
Query: 888 SIDIFEAF 895
++
Sbjct: 184 --ELDMLN 189
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 9e-10
Identities = 41/233 (17%), Positives = 75/233 (32%), Gaps = 70/233 (30%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ-RTAAYISQH-DIHIGE 61
+LGP GSGKTTL+ A++G L SG + NG ++ + R + + + +I
Sbjct: 35 ILGPNGSGKTTLLRAISGLLPY----SGNIFINGMEVRKIRNYIRYSTNLPEAYEIG--- 87
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
+TV + + +G+ + + E
Sbjct: 88 VTVNDIVYLYEELKGLD----------------------------RDLFLE--------- 110
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
+LK L L + L +S GQ V T L + +DE +D++
Sbjct: 111 -MLKALKL----GEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRH 165
Query: 182 HIVNSLGQFN-------HILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQ 227
I + ++ H L+ + + G +
Sbjct: 166 VISRYIKEYGKEGILVTHELD------------MLNLYKEYKAYFLVGNRLQG 206
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 7e-16
Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 24/191 (12%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 761
L VS G + G TGSGK+TL+ ++AG T G ++ G K R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG----DVLYDGERKKGYEIRR 78
Query: 762 ISGYCEQNDIHSP-----YVTVYESLLYSAW-LRLSSEVNSKTREMFVEEVMELVELNPL 815
G Q P V++ + ++ + V++ ME V L+
Sbjct: 79 NIGIAFQY----PEDQFFAERVFDEVAFAVKNFYPDRDPVPL-----VKKAMEFVGLDF- 128
Query: 816 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD 875
+ LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 129 -DSFKDRV-PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186
Query: 876 TGRTVVCTIHQ 886
G+TV+ H
Sbjct: 187 LGKTVILISHD 197
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 47/269 (17%), Positives = 95/269 (35%), Gaps = 58/269 (21%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQH-DIHIGEM 62
+ G GSGK+TL+ +AG ++ + SG V Y+G + +R Q+ +
Sbjct: 38 VAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE 94
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
V + +AF+ + ++ A
Sbjct: 95 RVFDEVAFAVKNFYP------------DRDPVPLVKKA---------------------- 120
Query: 123 ILKVLDLDVCADTVVGDEMLRG-----ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
++ + LD + + +SGG+++RV ++V L +DE GLD
Sbjct: 121 -MEFVGLDF--------DSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 171
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP----LEHV 233
++ + ++ G +I + V N D ++++ G+ V+ G LE
Sbjct: 172 EGKTDLLRIVEKWKT--LGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229
Query: 234 EQFFISMGFKCPKRKGIADFLQEVTSRKD 262
+ F + +R + S +
Sbjct: 230 DPRFFTSKMLVMRRLVLKGEDPFSMSDDE 258
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 1e-15
Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 39/204 (19%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG-YITGNITISGYPKNQETFT 760
L G+S + + G +++G +GSGK+TL+ +L T G + + + +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 761 R---ISGYCEQ--NDIHSPYVTVYES----LLYSAWLRLSSEVNSKTREMFVEEVMELVE 811
R + G+ Q I P +T E+ +L K + E ++ +
Sbjct: 80 RNRKL-GFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAKERGEYLLSELG 129
Query: 812 LN------PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 865
L P LS +++R+ IA L P ++F DEPT LD+
Sbjct: 130 LGDKLSRKP-----------YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR 178
Query: 866 VMRTVRNTVDTGRTVVCTIHQPSI 889
VM + G ++V H+ +
Sbjct: 179 VMDIFLKINEGGTSIVMVTHEREL 202
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 24/205 (11%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG-YITGNITISGYPK 754
++ + L V+ + G ++MG +GSGK+T+++++ + T G NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 755 NQETFTR---ISGYCEQ--NDIHSPYVTVYES----LLYSAWLRLSSEVNSKTREMFVEE 805
++ T R I G+ Q N I P +T E+ L++ + ++ + R E
Sbjct: 75 DELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIF----KYRGAMSGEERRKRALE 127
Query: 806 VMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 865
+++ EL R A P N LS Q++R+ IA L NP II D+PT LD++
Sbjct: 128 CLKMAELEE-RFAN-HKP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183
Query: 866 VMRTVRN-TVDTGRTVVCTIHQPSI 889
+M+ ++ + G+TVV H ++
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 5e-15
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 27/195 (13%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 760
L G++ + G +TA++G G GK+TL G + + G I N I K
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 761 RISGYCEQNDIHSP-----YVTVYESLLYSAW-LRLSSEVNSKTREMF--VEEVMELVEL 812
G Q+ P +VY+ + + A ++L + E+ V+ ++ +
Sbjct: 84 ESIGIVFQD----PDNQLFSASVYQDVSFGAVNMKLPED------EIRKRVDNALKRTGI 133
Query: 813 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 872
L+ + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 134 EHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE 188
Query: 873 -TVDTGRTVVCTIHQ 886
+ G T++ H
Sbjct: 189 MQKELGITIIIATHD 203
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 9e-09
Identities = 49/267 (18%), Positives = 99/267 (37%), Gaps = 62/267 (23%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQH-------- 55
+LG G GK+TL G L S SG++ ++ + ++ + +
Sbjct: 39 ILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKGIMKLRESIGIVFQDP 93
Query: 56 DIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQE 115
D + +V + ++F A + ++ K + +A
Sbjct: 94 DNQLFSASVYQDVSFGAVNMKL-----------PEDEIRKRVDNA--------------- 127
Query: 116 ANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 175
LK ++ D +S GQ+KRV +LV L +DE + GL
Sbjct: 128 --------LKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 176 DSSTTFHIVNSLGQFNHILNGTALIS---LLQPAPEVYNLFDDIILVSDGQIVYQGPLEH 232
D I+ L + L T +I+ + V D++ ++ +G+++ QG +
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDI----DIVPLYCDNVFVMKEGRVILQGNPKE 230
Query: 233 V---EQFFISMGFKCPKRKGIADFLQE 256
V ++ + + P+ + + L+E
Sbjct: 231 VFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 37/203 (18%)
Query: 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ- 756
L+GVS + G +T ++G GSGK+TL++V+ G + G + N I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 757 ------ETFTRISGYCEQNDIHS-PYVTVYE-----------SLLYSAWLRLSSEVNSKT 798
TF Q +TV E S L S + + +
Sbjct: 80 YHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM 130
Query: 799 REMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858
E +++E ++L+ L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 131 VEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 859 DARAAAVVMRTVRNTVDTGRTVV 881
A + V G T +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 46/182 (25%), Positives = 70/182 (38%), Gaps = 41/182 (22%)
Query: 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAY-IS---QHDI 57
TL++GP GSGK+TL+ + G L + G+V + D+ P Y I Q
Sbjct: 36 TLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQT-P 91
Query: 58 HI-GEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
EMTV E L C G + + ++ + +V + +
Sbjct: 92 QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE--------------EEMVEKAFK- 136
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM---LVGPAHALFMDEIST 173
IL+ L L D G+ +SGGQ K V E+ L+ + MDE
Sbjct: 137 ------ILEFLKLSHLYDRKAGE-----LSGGQMKLV---EIGRALMTNPKMIVMDEPIA 182
Query: 174 GL 175
G+
Sbjct: 183 GV 184
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 6e-12
Identities = 85/547 (15%), Positives = 155/547 (28%), Gaps = 176/547 (32%)
Query: 636 RSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRG 695
++E R + R+ +Q F Y+V Q +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQV--------FAK---------YNVSRLQPYLKL- 140
Query: 696 VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTL-MDVLAGRKTRGYITGNI---TISG 751
+ LL RP + GV GSGKT + +DV K + + I +
Sbjct: 141 ----RQALLE-----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 752 YPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 811
+ + Q D P T + LR+ S R L++
Sbjct: 192 CNSPETVLEMLQKLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRR---------LLK 239
Query: 812 LNPLRQALVGLPGVNG-------------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858
P L+ L V L T + K++T + A + I +D + L
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTL 298
Query: 859 -DARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDGYNPATWMLE 917
+++++ + V T + + I IRDG ATW
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES---------IRDG--LATW--- 344
Query: 918 VTAPSQEIALGVDFAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFF----- 972
D +L I ++ + L +PA ++++ LS F
Sbjct: 345 ------------DNWKHVNCDKLTTIIESSLNVL-EPA-EYRKMFDR----LSVFPPSAH 386
Query: 973 --TQCMACLWKQ-------------HWSYS---RNP------------------------ 990
T ++ +W H YS + P
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLH-KYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 991 ------HYTAVR--FLFTIFISLIFGTMFWDMG--TKTTKQQDLFNTMGFMYVAVYFLGV 1040
HY + + + + +G K + + +++ FL
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 1041 ------LNVSSVQPVVD-LERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLI 1093
++ +++ L++ FY+ PYI Y +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYK---------------------PYICDNDPKYERL 544
Query: 1094 VYAMIGF 1100
V A++ F
Sbjct: 545 VNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 1e-09
Identities = 62/459 (13%), Positives = 130/459 (28%), Gaps = 156/459 (33%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEM 62
L+ G GSGKT + L + K K+ + +++
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---------------------LNLK-- 190
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRR-EKAAKIIPDADIDVFMKAVVREGQEANVITD 121
C + +ML +L + + D ++ + R +
Sbjct: 191 ----------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL----RIHSIQAELRR 236
Query: 122 YI--------LKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 173
+ L VL +V + + + + +TT +++
Sbjct: 237 LLKSKPYENCLLVLL-NVQ-NA----KAWNAFNLSCKILLTTRFK-----------QVTD 279
Query: 174 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDG----QIVYQGP 229
L ++TT HI +H L P EV +L + +++ P
Sbjct: 280 FLSAATTTHIS-----LDHHSMT------LTP-DEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 230 LEHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSF 289
+S+ IA+ +++ + W + ++ V + +S
Sbjct: 328 R------RLSI---------IAESIRDGLAT------W----DNWKHVNCDKLTTIIESS 362
Query: 290 ------HVGRKLGDELGIPFDKKNSH-PAALTTRKYGVGKKE----LLKACFSREHLLMK 338
RK+ D L + F ++H P L + + K ++ L++
Sbjct: 363 LNVLEPAEYRKMFDRLSV-FP-PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY--SLVE 418
Query: 339 RNSFVYIFRLTQVMFLAVIGMTIFLRTKMHR--------------DSLT----DGVIYTG 380
+ + + + + + +HR D L D Y
Sbjct: 419 KQPKESTISIPSIYLE--LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY-- 474
Query: 381 ALFFILTTITFNG--MAEISMT--IAKLPVFYKQRDLRF 415
I G + I + + + D RF
Sbjct: 475 --SHI-------GHHLKNIEHPERMTLFRMVF--LDFRF 502
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 2e-09
Identities = 90/645 (13%), Positives = 179/645 (27%), Gaps = 228/645 (35%)
Query: 47 RTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVF- 105
T YI Q D + V F+ V SR ++L R+ ++ P ++ +
Sbjct: 108 MTRMYIEQRDRLYNDNQV-----FAKY--NV-SRLQPYLKL--RQALLELRPAKNVLIDG 157
Query: 106 MKAVVREGQEANVITDYILK-VLDLDVCADTVVGDEMLRGI---SGGQRKRVTTG-EMLV 160
+ G K + LDVC V +M I + T EML
Sbjct: 158 VLGS---G-----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 161 GPAHALFMDEISTGLDSSTTFHIVNSL-GQFNHILNGTALISLLQPAPEVYNLFDDIILV 219
+ + + S SS ++S+ + +L +P + + V
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-------KSKPYENCLLVLLN---V 253
Query: 220 SDGQIVYQGPLEHVEQFFISMGFKCP-----KRKGIADFLQEVTSRKDQEQYWVRNDEPY 274
+ + F C + K + DFL T+ + D
Sbjct: 254 QNA--------KAWNAF----NLSCKILLTTRFKQVTDFLSAATTTH------ISLDHHS 295
Query: 275 RFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRKYGVGKKELLKACFSREH 334
+T E + + + D +P + ++P L+ + E + R+
Sbjct: 296 MTLTPDEVKSLLLKY-LDCRPQD---LPREVLTTNPRRLSI----IA--ESI-----RDG 340
Query: 335 LLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGM 394
L + D LTTI
Sbjct: 341 LA---------------------------TWDNWKHVNCDK----------LTTI----- 358
Query: 395 AEISMTIAKL-PVFYKQR--DLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFD 451
I ++ L P Y++ L +P A IP ++ + +W + +
Sbjct: 359 --IESSLNVLEPAEYRKMFDRLSVFPPSA--------HIPTILLSL-IWFDVIKSDV--- 404
Query: 452 SNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV----LLLLF------- 500
+++VN++ S+V S + + L
Sbjct: 405 ------------MVVVNKLHK----------YSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 501 ------VLGGFVLSR----DDIKKWWKWGYWCSPLMY----AQNAIVVNEF----LGNSW 542
++ + + + DD+ + Y+ S + + ++ + F L +
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 543 KKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSK 602
L K + W G++ L+ L K
Sbjct: 503 ---LEQKIRHDSTA--------------WNASGSI--------------LNTLQQLKFYK 531
Query: 603 AFISEESQSTEHDSRTGGTVQ--LSTCANSSSHITRSESRDYVRR 645
+I + + R + L ++ S+ D +R
Sbjct: 532 PYICD---NDPKYERLVNAILDFLPKIE---ENLICSKYTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 5e-09
Identities = 97/653 (14%), Positives = 179/653 (27%), Gaps = 179/653 (27%)
Query: 219 VSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQEQ-YWVRNDEP--YR 275
+ Q Y+ L E F+ F C K + D + + S+++ + ++ R
Sbjct: 11 TGEHQYQYKDILSVFEDAFVD-NFDC---KDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 276 FVTV-----KEFVHAFQSFHVGRKLGDE---LGIPFDKKNSHPAALTT-------RKYGV 320
+E V F V L L P + P+ +T R Y
Sbjct: 67 LFWTLLSKQEEMVQKF----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 321 GKKELLKACFSREHLLMK-RNSFVYIFRLTQVMFLAVIGMTIF---------LRTKMHRD 370
+ K SR +K R + + L + + G+ + +
Sbjct: 123 NQV-FAKYNVSRLQPYLKLRQA---LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 371 SLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKI 430
+ + + + + L Q D P+W + I
Sbjct: 179 KMDFKIFW----------LNLKNCNSPETVLEMLQKLLYQID----PNWT-SRSDHSSNI 223
Query: 431 PISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLL---LLIVNQMSSAMFRLIAAVG-RSMV 486
+ I + + R K LL++ + +A + A +
Sbjct: 224 KLRIHSIQAEL-------------RRLLKSKPYENCLLVLLNVQNA--KAWNAFNLSCKI 268
Query: 487 VANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKIL 546
+ T V L +S D L + ++ ++L + L
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSM---------TLTPDEVKSLLLKYLDCRPQD-L 318
Query: 547 PN---KTKPLGIEV---LDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGT 600
P T P + + G T W + LT I L+ L P
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-------LNVLEPAEY 371
Query: 601 SKAF-----------ISEE------SQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYV 643
K F I + D V ++ S V
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM----VVVNKLHKYSL----------V 417
Query: 644 RRRNSSSQSR--------ETTIETDQPKNRGMV----LP--FEPFSLT--------FDEI 681
++ S + +E + +R +V +P F+ L + I
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 682 TY---SVDMPQEMKR-RGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR 737
+ +++ P+ M R V D + R + +GS TL + +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLD----FRFLEQKIRHD--STAWNASGSILNTLQQL---K 528
Query: 738 KTRGYITGNITISGYPKNQETFTR-ISGY------CEQNDIHSPYVTVYESLL 783
+ YI N + R ++ E+N I S Y + L
Sbjct: 529 FYKPYIC---------DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 8e-10
Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 47/203 (23%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-ITGNITISGYPKNQETFTRI 762
L ++ G AL+G TGSGK+T+ +L R Y G+I I G KN + R
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLL----YRFYDAEGDIKIGG--KNVNKYNRN 89
Query: 763 S-----GYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL 812
S G Q N+ T+ ++LY +L + T E EV++ +
Sbjct: 90 SIRSIIGIVPQDTILFNE------TIKYNILYG---KLDA-----TDE----EVIKATKS 131
Query: 813 NPLRQALVGLP----------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 862
L + LP G+ LS +R+R+ IA L+ +P I+ DE TS LD++
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190
Query: 863 AAVVMRTVRNTVDTGRTVVCTIH 885
+ + V + + RT++ H
Sbjct: 191 EYLFQKAVED-LRKNRTLIIIAH 212
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 53/243 (21%), Positives = 97/243 (39%), Gaps = 76/243 (31%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-----------VPQRTAAYI 52
L+G GSGK+T+ L D A G + G +++++ VPQ T +
Sbjct: 51 LVGHTGSGKSTIAKLLYRFYD----AEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILF- 105
Query: 53 SQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVRE 112
++ T++ + + + DA + V++
Sbjct: 106 --NE------TIKYNILY-GK------------------------LDAT----DEEVIKA 128
Query: 113 GQEANVITDYILKVLDLDVCADTVVGDEMLRGI--SGGQRKRVTTGEMLVGPAHALFMDE 170
+ A + D+I L DT+VG+ +G+ SGG+R+R+ L+ + DE
Sbjct: 129 TKSAQ-LYDFIEA---LPKKWDTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDE 181
Query: 171 ISTGLDSSTTFHIVNSLGQFNHILNGTALI-----SLLQPAPEVYNLFDDIILVSDGQIV 225
++ LDS T + ++ N T +I S + A + IIL++ G+IV
Sbjct: 182 ATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLSTISSA-------ESIILLNKGKIV 232
Query: 226 YQG 228
+G
Sbjct: 233 EKG 235
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 48/210 (22%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYPKN 755
D L VS PG AL+G +G+GK+T++ +L R Y +G I I G ++
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF----RFYDISSGCIRIDG--QD 117
Query: 756 QETFTRIS-----GYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEE 805
T+ S G Q ND T+ +++ Y R+++ + E
Sbjct: 118 ISQVTQASLRSHIGVVPQDTVLFND------TIADNIRYG---RVTA-----GND----E 159
Query: 806 VMELVELNPLRQALVGLP----------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 855
V + + A++ P G+ LS +++R+ IA ++ P II +DE T
Sbjct: 160 VEAAAQAAGIHDAIMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEAT 218
Query: 856 SGLDARAAAVVMRTVRNTVDTGRTVVCTIH 885
S LD + ++ V RT + H
Sbjct: 219 SALDTSNERAIQASL-AKVCANRTTIVVAH 247
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 57/243 (23%), Positives = 94/243 (38%), Gaps = 75/243 (30%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF-----------VPQRTAAYI 52
L+GP G+GK+T++ L D S SG + +G D+ + VPQ T +
Sbjct: 85 LVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF- 140
Query: 53 SQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVRE 112
+D T+ + + + R A V
Sbjct: 141 --ND------TIADNIRY-GR------------------------VTAG----NDEVEAA 163
Query: 113 GQEANVITDYILKVLDLDVCADTVVGDEMLRG--ISGGQRKRVTTGEMLVGPAHALFMDE 170
Q A I D I+ + T VG+ RG +SGG+++RV ++ + +DE
Sbjct: 164 AQAAG-IHDAIMAFPE---GYRTQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDE 216
Query: 171 ISTGLDSSTTFHIVNSLGQFNHILNGTALI-----SLLQPAPEVYNLFDDIILVSDGQIV 225
++ LD+S I SL + N T ++ S + A D I+++ DG IV
Sbjct: 217 ATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTVVNA-------DQILVIKDGCIV 267
Query: 226 YQG 228
+G
Sbjct: 268 ERG 270
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 2e-09
Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 28/163 (17%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 762
LLN + + G G GK+TLM +A + G+ T + T
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPT--------QEECRT---- 497
Query: 763 SGYCEQN-DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG 821
Y E + D +V + + E T+E +++ + A+
Sbjct: 498 -VYVEHDIDGTHSDTSVLDFV---------FESGVGTKEA-IKDKLIEFGFTDEMIAMP- 545
Query: 822 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 864
++ LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 ---ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 7e-05
Identities = 41/291 (14%), Positives = 83/291 (28%), Gaps = 79/291 (27%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVT---------YNGHDMHEFVPQRTAAYISQ 54
++GP G+GK+TL+ L G+L + SG+V H
Sbjct: 704 VIGPNGAGKSTLINVLTGELLPT---SGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEY 760
Query: 55 HDIHIGEMTVRETLAFSARCQG---------VGSRYDMLVELSRREKAAKIIPDADIDVF 105
RET+ + R + ++ K + +
Sbjct: 761 IQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECS 820
Query: 106 MKAVVREGQEANVIT----------------DYILKVLDLDVCADTVVGDEM-------- 141
G ++ + K++ + + +
Sbjct: 821 FLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEI 880
Query: 142 ------------------LRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHI 183
+RG+SGGQ+ ++ H + +DE + LD + +
Sbjct: 881 EEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL 940
Query: 184 VNSLGQFNHILNGTALI-----SLLQPAPEVYNLFDDIILVSDGQIV-YQG 228
+L +F G +I + NL +++ V DG++
Sbjct: 941 SKALKEF----EGGVIIITHSAEFTK------NLTEEVWAVKDGRMTPSGH 981
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 5e-09
Identities = 54/200 (27%), Positives = 84/200 (42%), Gaps = 34/200 (17%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYP---KNQET 758
L G++ + G AL+G +G GK+T + ++ R Y + G ++I G N
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLM----QRLYDPLDGMVSIDGQDIRTINVRY 461
Query: 759 FTRISGYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 815
I G Q P + T+ E++ Y T + +E+ ++
Sbjct: 462 LREIIGVVSQE----PVLFATTIAENIRYGR--------EDVTMDE-IEKAVKEANAYDF 508
Query: 816 RQAL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR 868
L VG G LS Q++R+ IA LV NP I+ +DE TS LD + AVV
Sbjct: 509 IMKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567
Query: 869 TVRNTVDTGRTVVCTIHQPS 888
+ GRT + H+ S
Sbjct: 568 ALDK-AREGRTTIVIAHRLS 586
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 46/204 (22%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYP---KNQET 758
L G+S + G AL+G +G GK+T++ +L R Y + G++ + G N +
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE----RFYDPMAGSVFLDGKEIKQLNVQW 1104
Query: 759 FTRISGYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 815
G Q P + ++ E++ Y R+ S EE++
Sbjct: 1105 LRAQLGIVSQE----PILFDCSIAENIAYGDNSRVVSY----------EEIVRA-----A 1145
Query: 816 RQA-----LVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
++A + LP G G LS Q++R+ IA LV P I+ +DE TS LD
Sbjct: 1146 KEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205
Query: 862 AAAVVMRTVRNTVDTGRTVVCTIH 885
+ VV + + GRT + H
Sbjct: 1206 SEKVVQEAL-DKAREGRTCIVIAH 1228
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 7e-09
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 718 ALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFTRISGYCEQNDIHSP 774
L+G TG+GK+ ++++AG + RG + I+ P + R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 775 YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834
+++VY ++ Y LR V R V E+ E + + L LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 835 RLTIAVELVANPSIIFMDEPTSGLDAR 861
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 6e-05
Identities = 39/174 (22%), Positives = 64/174 (36%), Gaps = 57/174 (32%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQ------HD 56
LLGP G+GK+ + +AG + G+V NG D+ P +R ++ Q H
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH- 84
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
++V +A+ R + R E+ + VRE
Sbjct: 85 -----LSVYRNIAYGLR------------NVERVERDRR--------------VRE---- 109
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 170
+ + L + + D +SGG+R+RV LV L +DE
Sbjct: 110 ------MAEKLGIA-----HLLDRKPARLSGGERQRVALARALVIQPRLLLLDE 152
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 9e-09
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 41/197 (20%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYP---KNQET 758
L +S +P + A G +G GK+T+ +L R Y G ITI G P + E
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLL----ERFYQPTAGEITIDGQPIDNISLEN 73
Query: 759 FTRISGYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 815
+ G+ Q+ + T+ E+L Y + E ++ ++++L
Sbjct: 74 WRSQIGFVSQD----SAIMAGTIRENLTYGLEGDYTDE-----------DLWQVLDLAFA 118
Query: 816 RQALVGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 864
R + +P + L+TE QR+RL IA + NP I+ +DE T+ LD+ + +
Sbjct: 119 RSFVENMP--DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 865 VVMRTVRNTVDTGRTVV 881
+V + + +++ GRT +
Sbjct: 177 MVQKAL-DSLMKGRTTL 192
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 45.9 bits (110), Expect = 3e-05
Identities = 53/244 (21%), Positives = 91/244 (37%), Gaps = 76/244 (31%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSL------KASGKVTYNGHDMHEFVPQ--RTA-AYISQ 54
GP G GK+T+ SL +G++T +G + + R+ ++SQ
Sbjct: 33 FAGPSGGGKSTIF---------SLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQ 83
Query: 55 HDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE--KAAKIIPDADIDVFMKAVVRE 112
D I T+RE L + G D + + + + A F++ + +
Sbjct: 84 -DSAIMAGTIRENLTY-------GLEGD----YTDEDLWQVLDL---AFARSFVENM-PD 127
Query: 113 GQEANVITDYILKVLDLDVCADTVVGDEMLRGI--SGGQRKRVTTGEMLVGPAHALFMDE 170
+T VG+ RG+ SGGQR+R+ + L +DE
Sbjct: 128 Q--------L-----------NTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDE 165
Query: 171 ISTGLDSSTTFHIVNSLGQFNHILNG-TALI-----SLLQPAPEVYNLFDDIILVSDGQI 224
+ LDS + + +L + ++ G T L+ S + A D I + GQI
Sbjct: 166 ATASLDSESESMVQKAL---DSLMKGRTTLVIAHRLSTIVDA-------DKIYFIEKGQI 215
Query: 225 VYQG 228
G
Sbjct: 216 TGSG 219
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 5e-08
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 41/183 (22%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-IT-GNITISGYPKN 755
+K L + VS + G AL+G +GSGK+T+ ++ TR Y + G+I + G+ +
Sbjct: 354 KEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLF----TRFYDVDSGSICLDGH--D 406
Query: 756 QETFTRIS-----GYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEE 805
+ + Q ND T+ ++ Y+A + E +E+
Sbjct: 407 VRDYKLTNLRRHFALVSQNVHLFND------TIANNIAYAAEGEYTREQ--------IEQ 452
Query: 806 ------VMELVELNPLR-QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858
ME +E P ++G G + LS QR+R+ IA L+ + ++ +DE TS L
Sbjct: 453 AARQAHAMEFIENMPQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSAL 511
Query: 859 DAR 861
D
Sbjct: 512 DTE 514
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 6e-08
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 23/171 (13%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPK 754
+ GVS R G + L+G +GSGKTT++ ++AG R T+G + G ++ P
Sbjct: 25 PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP 84
Query: 755 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRL----SSEVNSKTREMFVEEVMELV 810
+ R G QN ++TVY+++ + LR E++++ V E++ +
Sbjct: 85 QK----RNVGLVFQNYALFQHMTVYDNVSFG--LREKRVPKDEMDAR-----VRELLRFM 133
Query: 811 ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
L + LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 134 RLESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 55/157 (35%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQ------HD 56
LLGP GSGKTT++ +AG + G V G + + P +R + Q H
Sbjct: 46 LLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQH- 101
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
MTV + ++F R + V P ++ A VRE
Sbjct: 102 -----MTVYDNVSFGLREKRV--------------------PKDEM----DARVRE---- 128
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153
+L+ + L+ + +SGGQ++RV
Sbjct: 129 ------LLRFMRLE-----SYANRFPHELSGGQQQRV 154
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 9e-08
Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 40/183 (21%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-IT-GNITISGYPKN 755
++ L ++ G AL+G +GSGK+T+ ++ TR Y I G+I + G+ +
Sbjct: 353 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI----TRFYDIDEGHILMDGH--D 406
Query: 756 QETFTRIS-----GYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEE 805
+T S Q ND TV ++ Y+ +RE +EE
Sbjct: 407 LREYTLASLRNQVALVSQNVHLFND------TVANNIAYA-------RTEEYSREQ-IEE 452
Query: 806 ------VMELVELNPLR-QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858
M+ + ++G GV LS QR+R+ IA L+ + I+ +DE TS L
Sbjct: 453 AARMAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSAL 511
Query: 859 DAR 861
D
Sbjct: 512 DTE 514
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 45/190 (23%)
Query: 700 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGYPKNQET 758
K+V L+ V+ G ++G +G+GKTT M ++AG + G +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNG 73
Query: 759 FTRISGYCEQNDIHS--------PYVTVYESLLYSAWLRLS----SEVNSKTREMFVEEV 806
+ E I P +T +E++ + L E+ + VEEV
Sbjct: 74 KLIVPP--EDRKIGMVFQTWALYPNLTAFENIAFP--LTNMKMSKEEIRKR-----VEEV 124
Query: 807 MELVELNPL-----RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA- 860
++++++ + R+ LS Q++R+ +A LV +PS++ +DEP S LDA
Sbjct: 125 AKILDIHHVLNHFPRE----------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
Query: 861 -RAAAVVMRT 869
R R
Sbjct: 175 MR---DSARA 181
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 36/182 (19%), Positives = 58/182 (31%), Gaps = 66/182 (36%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDI------ 57
+LGP G+GKTT M +AG S +G++ ++ + I
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPP--EDRKIGMVFQT 90
Query: 58 -----HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVRE 112
+ +T E +AF + +I V E
Sbjct: 91 WALYPN---LTAFENIAFPLTNMKM--------------------SKEEIR----KRVEE 123
Query: 113 GQEANVITDYILKVLDLDVCADTVVGDEML----RGISGGQRKRVTTGEMLVGPAHALFM 168
+ K+LD+ +L R +SG Q++RV LV L +
Sbjct: 124 ----------VAKILDIH---------HVLNHFPRELSGAQQQRVALARALVKDPSLLLL 164
Query: 169 DE 170
DE
Sbjct: 165 DE 166
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 28/199 (14%), Positives = 64/199 (32%), Gaps = 21/199 (10%)
Query: 727 KTTLMDVLAGRKTRGYITGNIT-ISGYPKNQETFTRISG-YCEQNDIHSPYVTVYESLLY 784
+ + +L + R + + + + + + + G ++
Sbjct: 140 QGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALARE 199
Query: 785 SAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG------LSTEQRKRLTI 838
+A ++ + E + E+V + + + LS +R L +
Sbjct: 200 AALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGL 259
Query: 839 AVEL------VANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIF 892
A L S++ +DEPT LD ++ + + V+ H ++
Sbjct: 260 AFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELK 317
Query: 893 EAFDAGI-----PGVSKIR 906
+A D I G SK+
Sbjct: 318 DAADHVIRISLENGSSKVE 336
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 5e-07
Identities = 54/277 (19%), Positives = 95/277 (34%), Gaps = 94/277 (33%)
Query: 6 GPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVR 65
G G GK++L+ AL ++D K G V G + AY+ Q I ++R
Sbjct: 38 GQVGCGKSSLLSALLAEMD---KVEGHVAIKG----------SVAYVPQQA-WIQNDSLR 83
Query: 66 ETLAFSARCQGVGSRYDMLVELSRREKAAKIIP----DADIDVFMKAVVREGQEANVITD 121
E + F G + + +I D+++
Sbjct: 84 ENILF-------GCQLE-------EPYYRSVIQACALLPDLEILPSG------------- 116
Query: 122 YILKVLDLDVCADTVVGDEMLRGI--SGGQRKRVTTGEMLVGPAHAL-------FMDEIS 172
D T +G+ +G+ SGGQ++RV+ A A+ D+
Sbjct: 117 ------DR-----TEIGE---KGVNLSGGQKQRVSL-------ARAVYSNADIYLFDDPL 155
Query: 173 TGLDSSTTFHIVNSLGQFNHILNGTALISL----LQPAPEVYNLFDDIILVSDGQIVYQG 228
+ +D+ HI ++ +L I L + P+V D II++S G+I G
Sbjct: 156 SAVDAHVGKHIFENVIGPKGMLKNKTRI-LVTHSMSYLPQV----DVIIVMSGGKISEMG 210
Query: 229 PLEHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQEQ 265
+ + + A+FL+ S
Sbjct: 211 SYQELLA----------RDGAFAEFLRTYASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 39/195 (20%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
LNG++ + G L A++G G GK++L+ L + + G++ I G ++
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVAIKG---------SVA 69
Query: 764 GYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LR--- 816
Y Q ++ ++ E++L+ + E + V++ L P L
Sbjct: 70 -YVPQ----QAWIQNDSLRENILF----------GCQLEEPYYRSVIQACALLPDLEILP 114
Query: 817 ---QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV--R 871
+ +G GVN LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 115 SGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGP 173
Query: 872 NTVDTGRTVVCTIHQ 886
+ +T + H
Sbjct: 174 KGMLKNKTRILVTHS 188
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 8e-07
Identities = 48/171 (28%), Positives = 73/171 (42%), Gaps = 31/171 (18%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 760
LN +S + PG + ++G +G GKTTL+ LAG + G I+ TI N
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 761 RISGYCEQNDIHSPYV-----TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 815
R GY Q V TVY ++ Y L + +E ++EL ++ L
Sbjct: 80 RRLGYLVQE-----GVLFPHLTVYRNIAYG--LGNGK-GRTAQERQRIEAMLELTGISEL 131
Query: 816 -----RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
+ LS Q++R +A L +P +I +DEP S LD +
Sbjct: 132 AGRYPHE----------LSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 52/203 (25%), Positives = 77/203 (37%), Gaps = 57/203 (28%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-IT-GNITISG---------- 751
L GV+ G + ALMG G+GK+TL +LAG Y + G I + G
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENILELSPDE 76
Query: 752 -----------YPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRE 800
YP + G VT+ L + +L EV
Sbjct: 77 RARKGLFLAFQYP------VEVPG-----------VTIANFLRLALQAKLGREVGVAEFW 119
Query: 801 MFVEEVMELVELNP---LRQALVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTS 856
V++ +EL++ + R +N G S ++KR I LV P+ +DE S
Sbjct: 120 TKVKKALELLDWDESYLSR-------YLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDS 172
Query: 857 GLDARAAAVVMRTVRNTVDTGRT 879
GLD A ++ V V+ R
Sbjct: 173 GLDIDA----LKVVARGVNAMRG 191
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 38/200 (19%), Positives = 76/200 (38%), Gaps = 29/200 (14%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ- 756
+L +S + PG L+G TGSGK+TL+ G I I G +
Sbjct: 32 GGNAIL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGVSWDSI 87
Query: 757 ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 813
+ V + ++S R + + N+ + + +V + V L
Sbjct: 88 TLEQWRKAFG------------VIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLR 135
Query: 814 PLRQAL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
+ + + G LS ++ + +A +++ I+ +DEP++ LD ++
Sbjct: 136 SVIEQFPGKLDFVLVDGGCV-LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQII 194
Query: 867 MRTVRNTVDTGRTVVCTIHQ 886
RT++ TV+ +
Sbjct: 195 RRTLKQAF-ADCTVILCEAR 213
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 39/193 (20%), Positives = 77/193 (39%), Gaps = 38/193 (19%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
L ++ G L A+ G TG+GKT+L+ ++ G G I SG RIS
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG---------RIS 102
Query: 764 GYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LR--- 816
+C Q + ++ T+ E+++ ++ E V++ +L +
Sbjct: 103 -FCSQ----NSWIMPGTIKENIIGVSY-----------DEYRYRSVIKACQLEEDISKFA 146
Query: 817 ---QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT 873
++G G+ LS QR R+++A + + + +D P LD + +
Sbjct: 147 EKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205
Query: 874 VDTGRTVVCTIHQ 886
+ +T + +
Sbjct: 206 LMANKTRILVTSK 218
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 51/248 (20%), Positives = 87/248 (35%), Gaps = 101/248 (40%)
Query: 6 GPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHD-IHIGEMTV 64
G G+GKT+L++ + G+L+ + GK+ ++G ++ SQ+ I G T+
Sbjct: 71 GSTGAGKTSLLMMIMGELE---PSEGKIKHSG----------RISFCSQNSWIMPG--TI 115
Query: 65 RETLAFSARCQGVGSRYDMLVELSRREKAAKIIP----DADIDVFMKAVVREGQEANVIT 120
+E + +G YD + +I + DI F E
Sbjct: 116 KENI--------IGVSYD-------EYRYRSVIKACQLEEDISKF-----AEK------- 148
Query: 121 DYILKVLDLDVCADTVVGDEMLRGI--SGGQRKRVTTGEMLVGPAHAL-------FMDEI 171
D V+G+ GI SGGQR R++ A A+ +D
Sbjct: 149 -------DN-----IVLGE---GGITLSGGQRARISL-------ARAVYKDADLYLLDSP 186
Query: 172 STGLDSSTTFHIVNSLGQFNHILNG----------TALISLLQPAPEVYNLFDDIILVSD 221
LD T I F + T+ + L+ A D I+++ +
Sbjct: 187 FGYLDVLTEKEI------FESCVCKLMANKTRILVTSKMEHLKKA-------DKILILHE 233
Query: 222 GQIVYQGP 229
G + G
Sbjct: 234 GSSYFYGT 241
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 5e-06
Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 38/171 (22%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 760
L+ +S G ++G TG+GKT ++++AG G I ++ +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 761 RISGYCEQNDIHSPYV-----TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 815
+ QN Y V ++L + +R+ ++ R V + +++ L
Sbjct: 72 HDIAFVYQN-----YSLFPHMNVKKNLEFG--MRMK-KIKDPKR---VLDTARDLKIEHL 120
Query: 816 -----RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 121 LDRNPLT----------LSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 5e-06
Identities = 51/246 (20%), Positives = 85/246 (34%), Gaps = 98/246 (39%)
Query: 6 GPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVR 65
G G+GKT+L++ + G+L+ + GK+ ++G ++ SQ I T++
Sbjct: 41 GSTGAGKTSLLMMIMGELE---PSEGKIKHSG----------RISFCSQFS-WIMPGTIK 86
Query: 66 ETLAFSARCQGVGSRYDMLVELSRREKAAKIIP----DADIDVFMKAVVREGQEANVITD 121
E + F G YD + +I + DI F E
Sbjct: 87 ENIIF-------GVSYD-------EYRYRSVIKACQLEEDISKF-----AEK-------- 119
Query: 122 YILKVLDLDVCADTVVGDEMLRGI--SGGQRKRVTTGEMLVGPAHAL-------FMDEIS 172
D V+G+ GI SGGQR R++ A A+ +D
Sbjct: 120 ------DN-----IVLGE---GGITLSGGQRARISL-------ARAVYKDADLYLLDSPF 158
Query: 173 TGLDSSTTFHIVNSLGQFNHILNG----------TALISLLQPAPEVYNLFDDIILVSDG 222
LD T I F + T+ + L+ A D I+++ +G
Sbjct: 159 GYLDVLTEKEI------FESCVCKLMANKTRILVTSKMEHLKKA-------DKILILHEG 205
Query: 223 QIVYQG 228
+ G
Sbjct: 206 SSYFYG 211
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 9e-06
Identities = 39/193 (20%), Positives = 75/193 (38%), Gaps = 37/193 (19%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
L ++ G L A+ G TG+GKT+L+ ++ G G I SG RIS
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG---------RIS 72
Query: 764 GYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LR--- 816
+C Q ++ T+ E++++ E V++ +L +
Sbjct: 73 -FCSQ----FSWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLEEDISKFA 117
Query: 817 ---QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT 873
++G G+ LS QR R+++A + + + +D P LD + +
Sbjct: 118 EKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 874 VDTGRTVVCTIHQ 886
+ +T + +
Sbjct: 177 LMANKTRILVTSK 189
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 9e-06
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGR 878
+VG G LS QR+R+ IA LV NP I+ DE TS LD + V+MR + GR
Sbjct: 138 IVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGR 195
Query: 879 TVVCTIH 885
TV+ H
Sbjct: 196 TVIIIAH 202
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 34/183 (18%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGY----- 752
LN ++ + G AL+G +GSGK+TL+ +AG T G I
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTEL 70
Query: 753 -PKNQET---FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVME 808
PK++ F QN P++TVY+++ + L L + + + V EV +
Sbjct: 71 PPKDRNVGLVF--------QNWALYPHMTVYKNIAFP--LELR-KAPREEIDKKVREVAK 119
Query: 809 LVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAVV 866
++ ++ L L P LS Q++R+ IA LV P ++ +DEP S LDA R +
Sbjct: 120 MLHIDKL---LNRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLR---LE 171
Query: 867 MRT 869
+R
Sbjct: 172 VRA 174
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 47/178 (26%), Positives = 70/178 (39%), Gaps = 63/178 (35%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ-RTAAYISQ------HD 56
LLGP GSGK+TL+ +AG + SGK+ ++ D+ E P+ R + Q H
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPH- 89
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
MTV + +AF + P +ID K V +E
Sbjct: 90 -----MTVYKNIAFPLELRKA--------------------PREEID---KKV----REV 117
Query: 117 NVITDYILKVLDLDVCADTVVGDEML----RGISGGQRKRVTTGEMLVGPAHALFMDE 170
K+L + D++L +SGGQ++RV LV L +DE
Sbjct: 118 A-------KMLHI---------DKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDE 159
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 52/207 (25%), Positives = 77/207 (37%), Gaps = 61/207 (29%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-IT-GNITISG---------- 751
L G+S PG + A+MG GSGK+TL LAGR+ Y +T G + G
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLLALSPED 93
Query: 752 -----------YPKNQETFTRISGYCEQNDIHSPYVTVYESLL--YSAWLRLSSEVNSKT 798
YP I G V+ L +A +
Sbjct: 94 RAGEGIFMAFQYP------VEIPG-----------VSNQFFLQTALNAVRSYRGQETLDR 136
Query: 799 REM--FVEEVMELVELNP---LRQALVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMD 852
+ +EE + L+++ R VN G S ++KR I V P + +D
Sbjct: 137 FDFQDLMEEKIALLKMPEDLLTRS-------VNVGFSGGEKKRNDILQMAVLEPELCILD 189
Query: 853 EPTSGLDARAAAVVMRTVRNTVDTGRT 879
E SGLD A ++ V + V++ R
Sbjct: 190 ESDSGLDIDA----LKVVADGVNSLRD 212
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 28/196 (14%)
Query: 696 VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGY 752
V+ + + G+ G + L+G G+GKTT + +AG R +G I I+
Sbjct: 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK 73
Query: 753 PKNQETFTRISGYCEQNDIHSP-------YVTVYESLLYSAWLRLSSEVNSKTREMFVEE 805
P + I+ P +TVYE+L+ A+ R E + +E
Sbjct: 74 PAHVINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD----LEW 121
Query: 806 VMELV-ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 864
+ L L + L G LS +++ L I L++ P ++ MDEP+ GL +
Sbjct: 122 IFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVS 176
Query: 865 VVMRTVRNTVDTGRTV 880
V ++ G T+
Sbjct: 177 EVFEVIQKINQEGTTI 192
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 4e-05
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 15/73 (20%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDI------ 57
L+G G+GKTT + A+AG + + GK+ +NG D+ I++ I
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV----INRMGIALVPEG 89
Query: 58 -HI-GEMTVRETL 68
I E+TV E L
Sbjct: 90 RRIFPELTVYENL 102
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV-RNTVDTG 877
VG G LS QR+ + +A L+ P ++ +D TS LDA V R + +
Sbjct: 149 EVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWAS 207
Query: 878 RTVVCTIH 885
RTV+
Sbjct: 208 RTVLLITQ 215
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 34/163 (20%)
Query: 719 LMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGY------PKNQE---TFTRISGYCEQ 768
L+G +G GKTT + ++AG + T G I PK++ F Q
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDRNISMVF--------Q 90
Query: 769 NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 828
+ P++TVYE++ + L++ + + V EL+++ L L P L
Sbjct: 91 SYAVWPHMTVYENIAFP--LKIK-KFPKDEIDKRVRWAAELLQIEEL---LNRYPA--QL 142
Query: 829 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAVVMRT 869
S QR+R+ +A +V P ++ MDEP S LDA R V MR
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR---VAMRA 182
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 44/178 (24%), Positives = 68/178 (38%), Gaps = 63/178 (35%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ-RTAAYISQ------HD 56
LLGP G GKTT + +AG + + G++ + D+ P+ R + + Q H
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPH- 97
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
MTV E +AF + + P +ID K V + A
Sbjct: 98 -----MTVYENIAFPLKIKKF--------------------PKDEID---KRV----RWA 125
Query: 117 NVITDYILKVLDLDVCADTVVGDEML----RGISGGQRKRVTTGEMLVGPAHALFMDE 170
++L + +E+L +SGGQR+RV +V L MDE
Sbjct: 126 A-------ELLQI---------EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 167
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 52/193 (26%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGY---- 752
K+ ++GVS + G AL+G +G GKTT + +LAG T G I
Sbjct: 13 FGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVND 69
Query: 753 --PKNQET---FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS----SEVNSKTREMFV 803
PK +E F QN P++TV+E++ + LR EV + V
Sbjct: 70 IPPKYREVGMVF--------QNYALYPHMTVFENIAFP--LRARRISKDEVEKR-----V 114
Query: 804 EEVMELVELNPL-----RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858
E+ + ++ L Q LS Q++R+ +A LV P ++ DEP S L
Sbjct: 115 VEIARKLLIDNLLDRKPTQ----------LSGGQQQRVALARALVKQPKVLLFDEPLSNL 164
Query: 859 DA--RAAAVVMRT 869
DA R ++MR
Sbjct: 165 DANLR---MIMRA 174
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 24/161 (14%)
Query: 719 LMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGYPKNQETFTRISGYCE-------QND 770
L+G +G GKTT + ++AG + + G I I + Q+
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY 90
Query: 771 IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 830
P++TVY+++ + L+L +V + + V EV EL+ L L L P LS
Sbjct: 91 ALYPHMTVYDNIAFP--LKLR-KVPRQEIDQRVREVAELLGLTEL---LNRKPR--ELSG 142
Query: 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAVVMRT 869
QR+R+ + +V P + MDEP S LDA R V MR
Sbjct: 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR---VRMRA 180
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 760
LN VS G + ++G +G+GK+TL+ + R T G + ++ +++ T
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 761 RIS-GYCEQ--NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 817
R G Q N + S TV+ ++ L L + + V E++ LV L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LELDN-TPKDEVKRRVTELLSLVGLGDKHD 158
Query: 818 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
+ P + LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 159 SY---P--SNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 885
RL +++ L S++ +DEPT LD ++ + + V+ H
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 121
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 861
GV LS Q++RL+IA + NP I+ +DE TS LD
Sbjct: 475 GVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1245 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-16 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-26 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-13 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-25 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-21 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-25 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-12 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-23 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-14 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 9e-16 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-17 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-22 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-17 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 8e-14 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-13 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-20 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-18 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-20 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-13 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-16 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 9e-19 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 7e-16 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-13 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 9e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-13 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-17 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 5e-15 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-14 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-12 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.003 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.004 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 8e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-05 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 1e-05 | |
| d1xjca_ | 165 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 3e-04 | |
| d2p67a1 | 327 | c.37.1.10 (A:1-327) LAO/AO transport system kinase | 9e-04 | |
| d2ak3a1 | 189 | c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow | 0.001 | |
| d1rkba_ | 173 | c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien | 0.001 | |
| d2cdna1 | 181 | c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium | 0.002 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.003 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 0.004 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 109 bits (275), Expect = 2e-27
Identities = 50/204 (24%), Positives = 96/204 (47%), Gaps = 10/204 (4%)
Query: 692 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNIT 748
K + ++ + L V+ + G ++MG +GSGK+T+++++ + T G + NI
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 749 ISGYPKNQETFTRIS--GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEV 806
+ ++ T R G+ Q P +T E++ + ++ + R E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 807 MELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 866
+++ EL + P N LS Q++R+ IA L NP II D+PT LD++ +
Sbjct: 129 LKMAEL--EERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI 184
Query: 867 MRTVRNTVD-TGRTVVCTIHQPSI 889
M+ ++ + G+TVV H ++
Sbjct: 185 MQLLKKLNEEDGKTVVVVTHDINV 208
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 76.4 bits (188), Expect = 6e-16
Identities = 39/234 (16%), Positives = 78/234 (33%), Gaps = 47/234 (20%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTA-------AYISQHD 56
++GP GSGK+T++ + + G+V + ++ ++ Q
Sbjct: 36 IMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
I +T E + + G +S E+ + + E
Sbjct: 93 NLIPLLTALENVELPLIFKYRG-------AMSGEERRKRAL-----------------EC 128
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
+ + + + +SGGQ++RV L + D+ + LD
Sbjct: 129 LKMAELEERFAN-----------HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 177 SSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230
S T I+ L + N T ++ V + II + DG++ + L
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHD--INVARFGERIIYLKDGEVEREEKL 229
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 105 bits (263), Expect = 7e-26
Identities = 44/203 (21%), Positives = 75/203 (36%), Gaps = 14/203 (6%)
Query: 696 VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYP 753
V+ + + G+ G + L+G G+GKTT + +AG R +G I N
Sbjct: 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK 73
Query: 754 KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 813
+ P +TVYE+L+ A+ R E + L
Sbjct: 74 PAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE---GIKRDLEWIFSLFPRLK 130
Query: 814 PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT 873
+ L G LS +++ L I L++ P ++ MDEP+ GL + V ++
Sbjct: 131 ERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI 185
Query: 874 VDTGRTVVCTIHQPSIDIFEAFD 896
G T++ + A
Sbjct: 186 NQEGTTILLVEQ----NALGALK 204
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 69.6 bits (170), Expect = 2e-13
Identities = 43/231 (18%), Positives = 74/231 (32%), Gaps = 42/231 (18%)
Query: 4 LLGPPGSGKTTLMLALAGKLD-SSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEM 62
L+G G+GKTT + A+AG + K + + + A + + E+
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
TV E L A + + I
Sbjct: 97 TVYENLMMGAYNRKDKEG--------IKRDLEWIF------------------------- 123
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 182
L + G +SGG+++ + G L+ L MDE S GL
Sbjct: 124 -SLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 177
Query: 183 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
+ + + N GT ++ + Q A + ++ GQIV +G +
Sbjct: 178 VFEVIQKINQ--EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 105 bits (262), Expect = 1e-25
Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 11/191 (5%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 761
L+GVS + G +T ++G GSGK+TL++V+ G + G + + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 762 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNS-------KTREMFVEEVMELVELNP 814
Q +TV E+LL S +NS E VE+ +++E
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 815 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 874
L G LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAG--ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 197
Query: 875 DTGRTVVCTIH 885
G T + H
Sbjct: 198 AKGITFLIIEH 208
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 91.6 bits (227), Expect = 5e-21
Identities = 55/234 (23%), Positives = 85/234 (36%), Gaps = 35/234 (14%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP----QRTAAYISQHDIHI 59
++GP GSGK+TL+ + G L + G+V + D+ P Q +
Sbjct: 35 IIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 91
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVI 119
EMTV E L C G + F K + + +E
Sbjct: 92 KEMTVLENLLIGEICPGESPLNSL---------------------FYKKWIPKEEEMVEK 130
Query: 120 TDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 179
IL+ L L D G+ +SGGQ K V G L+ + MDE G+
Sbjct: 131 AFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 185
Query: 180 TFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
I N + + G + + V N D + ++ +GQI+ +G E
Sbjct: 186 AHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEE 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 103 bits (259), Expect = 3e-25
Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 20/200 (10%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQ 756
+N ++ + G L+G +G GKTT + ++AG T G I
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT----EGRIYFGDRDVTY 72
Query: 757 -ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 815
R Q+ P++TVYE++ + ++ + + V EL+++ L
Sbjct: 73 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL 129
Query: 816 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN-TV 874
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 130 LNRYPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 875 DTGRTVVCTIHQPSIDIFEA 894
T + H D EA
Sbjct: 185 KLKVTTIYVTH----DQVEA 200
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 96.8 bits (241), Expect = 7e-23
Identities = 50/252 (19%), Positives = 91/252 (36%), Gaps = 52/252 (20%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ-RTAAYISQHDIHIGEM 62
LLGP G GKTT + +AG + + G++ + D+ P+ R + + Q M
Sbjct: 37 LLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM 93
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
TV E +AF + + + E ++ +
Sbjct: 94 TVYENIAFPLKIKK----------FPKDEIDKRV------------------------RW 119
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 182
++L ++ + +SGGQR+RV +V L MDE + LD+
Sbjct: 120 AAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 174
Query: 183 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGF 242
+ + + L T + E + D I +++ GQ++ G V +
Sbjct: 175 MRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEV--------Y 225
Query: 243 KCPKRKGIADFL 254
P +A F+
Sbjct: 226 LRPNSVFVATFI 237
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 98.8 bits (246), Expect = 6e-24
Identities = 36/187 (19%), Positives = 76/187 (40%), Gaps = 16/187 (8%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
L ++ G + G G GKTTL+ ++ + G I +G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKI 72
Query: 764 GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 823
+ + I ++V + L A L K + + + +E VE+ L++
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK----- 122
Query: 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVVC 882
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G ++
Sbjct: 123 -LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 883 TIHQPSI 889
+ + S
Sbjct: 182 SREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 64.9 bits (158), Expect = 3e-12
Identities = 30/201 (14%), Positives = 67/201 (33%), Gaps = 47/201 (23%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
+ GP G GKTTL+ ++ L G++ YNG + + + ++ + I
Sbjct: 29 VVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPR 83
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
+++V + L A GV + +++
Sbjct: 84 KISVEDYLKAVASLYGVKVNKNEIMDA--------------------------------- 110
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
L+ +++ + +S G +RV L+ A +D+ +D +
Sbjct: 111 ---LESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 181 FHIVNSLGQFNHILNGTALIS 201
++ S+ + + S
Sbjct: 162 HKVLKSILEILKEKGIVIISS 182
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 98.8 bits (246), Expect = 2e-23
Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 20/196 (10%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 760
L GVS R G + +++G +GSGK+T + + + + G I I+
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 761 RIS-----------GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL 809
Q+ ++TV E+++ ++ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSKHDARERALKYLAK 135
Query: 810 VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 869
V ++ Q LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 870 VRNTVDTGRTVVCTIH 885
++ + G+T+V H
Sbjct: 192 MQQLAEEGKTMVVVTH 207
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 72.2 bits (177), Expect = 3e-14
Identities = 49/268 (18%), Positives = 89/268 (33%), Gaps = 66/268 (24%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ----------------R 47
++G GSGK+T + + S G + NG +++ +
Sbjct: 33 IIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 89
Query: 48 TAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMK 107
+ QH MTV E + + S++D RE+A K
Sbjct: 90 RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHD------ARERALKY----------- 132
Query: 108 AVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALF 167
L + +D A + +SGGQ++RV+ L L
Sbjct: 133 ----------------LAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLL 172
Query: 168 MDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQ 227
DE ++ LD ++ + Q G ++ + ++ +I + G+I +
Sbjct: 173 FDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 230
Query: 228 GPLEHVEQFFISMGFKCPKRKGIADFLQ 255
G E V F P+ + FL+
Sbjct: 231 GDPEQV--------FGNPQSPRLQQFLK 250
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 98.8 bits (246), Expect = 3e-23
Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 17/185 (9%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
L ++ G + A+ G TGSGKT+L+ ++ G G I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 764 GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 823
+C Q P T+ E++++ E K+ + ++ + ++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCT 883
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 884 IHQPS 888
+
Sbjct: 215 TSKME 219
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.9 bits (189), Expect = 9e-16
Identities = 41/233 (17%), Positives = 79/233 (33%), Gaps = 52/233 (22%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
M + G GSGKT+L++ + G+L++S G + ++G F Q I
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGRVS--FCSQ---------FSWIM 109
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
T++E + F + ++ + +
Sbjct: 110 PGTIKENIIFGVSYDE--------------YRYKSVVKACQLQQDI-------------- 141
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
+TV+G+ + +SGGQR R++ + A +D LD T
Sbjct: 142 ------TKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE 194
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
+ S + N T ++ + E D I+++ G + G +
Sbjct: 195 EQVFESC-VCKLMANKTRILVTSK--MEHLRKADKILILHQGSSYFYGTFSEL 244
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 97.3 bits (242), Expect = 4e-23
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 13/203 (6%)
Query: 692 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNIT 748
K + LN VS G + ++G +G+GK+TL+ + R T G +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 68
Query: 749 ISGYPKNQET-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVM 807
++ +++ T R G Q+ TV+ ++ L + + K R V E++
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELL 125
Query: 808 ELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVM 867
LV L + LS Q++R+ IA L +NP ++ DE TS LD ++
Sbjct: 126 SLVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 868 RTVRNTVD-TGRTVVCTIHQPSI 889
+++ G T++ H+ +
Sbjct: 181 ELLKDINRRLGLTILLITHEMDV 203
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 79.9 bits (197), Expect = 4e-17
Identities = 49/256 (19%), Positives = 87/256 (33%), Gaps = 57/256 (22%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTA------AYISQHDI 57
++G G+GK+TL+ + + G V +G ++ I QH
Sbjct: 36 VIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+ TV +A + E ++
Sbjct: 93 LLSSRTVFGNVALPLELDNT----------PKDEVKRRV--------------------- 121
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
+L ++ L D+ + +SGGQ++RV L L DE ++ LD
Sbjct: 122 ---TELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFF 237
+TT I+ L N L T L+ + V + D + ++S+G+++ Q + V
Sbjct: 174 ATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEV---- 228
Query: 238 ISMGFKCPKRKGIADF 253
F PK F
Sbjct: 229 ----FSHPKTPLAQKF 240
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 95.8 bits (238), Expect = 1e-22
Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 12/189 (6%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQ 756
K +L G+S G + L+G G+GKTT + +++ + + G +T + +
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 757 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 816
++ Y + + E L + A +S E VE E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKI 127
Query: 817 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 876
+ V S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 877 GRTVVCTIH 885
G T++ + H
Sbjct: 183 GLTILVSSH 191
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 80.0 bits (197), Expect = 3e-17
Identities = 50/257 (19%), Positives = 87/257 (33%), Gaps = 54/257 (21%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ--RTAAYISQHDIHIGE 61
L+GP G+GKTT + ++ + S SG VT G ++ E + + +Y+ +
Sbjct: 33 LIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 89
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
M E L F A S E + +
Sbjct: 90 MQGIEYLRFVAGFYA----------SSSSEIEEMV------------------------E 115
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
++ L + + S G +++ L+ +DE ++GLD
Sbjct: 116 RATEIAGLGEKIK-----DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAR 170
Query: 182 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMG 241
+ L Q + + S EV L D I L+ +G IV G +E +
Sbjct: 171 EVRKILKQASQEGLTILVSS--HNMLEVEFLCDRIALIHNGTIVETGTVEEL-------- 220
Query: 242 FKCPKRKGIADFLQEVT 258
+ K + I + +EV
Sbjct: 221 KERYKAQNIEEVFEEVV 237
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 93.8 bits (233), Expect = 9e-22
Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 11/196 (5%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP---K 754
++ L ++ G AL+G +GSGK+T+ ++ G+I + G+
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREY 82
Query: 755 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP 814
+ QN ++ R + M+ +
Sbjct: 83 TLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR---MAYAMDFINKMD 139
Query: 815 LR-QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT 873
++G GV LS QR+R+ IA L+ + I+ +DE TS LD + + +
Sbjct: 140 NGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE- 197
Query: 874 VDTGRTVVCTIHQPSI 889
+ RT + H+ S
Sbjct: 198 LQKNRTSLVIAHRLST 213
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 70.6 bits (173), Expect = 8e-14
Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 44/236 (18%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDI 57
L+G GSGK+T+ + D G + +GHD+ E+ + A +SQ+
Sbjct: 43 TVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVH 99
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+ + E+AA++ A F
Sbjct: 100 LFNDTVANNIAYARTE----------EYSREQIEEAARM---AYAMDF------------ 134
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
+ +D DT++G E +SGGQR+R+ L+ + L +DE ++ LD+
Sbjct: 135 --------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 185
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
+ I +L + N T+L+ + D+I++V DG IV +G +
Sbjct: 186 ESERAIQAALDELQK--NRTSLVIAHR--LSTIEQADEIVVVEDGIIVERGTHSEL 237
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 92.7 bits (230), Expect = 2e-21
Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 10/195 (5%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP---K 754
D V+L+ ++ + + G + ++G +GSGK+TL ++ + I G+
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLALA 70
Query: 755 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP 814
+ R G Q D ++ +++ + +V + + + +
Sbjct: 71 DPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAK---LAGAHDFISELR 126
Query: 815 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 874
+ GLS QR+R+ IA LV NP I+ DE TS LD + V+MR + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 185
Query: 875 DTGRTVVCTIHQPSI 889
GRTV+ H+ S
Sbjct: 186 CKGRTVIIIAHRLST 200
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 67.6 bits (165), Expect = 7e-13
Identities = 49/236 (20%), Positives = 91/236 (38%), Gaps = 45/236 (19%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQHDI 57
+ ++G GSGK+TL + +G+V +GHD+ P R + Q D
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQ-DN 86
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+ ++ + ++ + V ++ K A
Sbjct: 87 VLLNRSIIDNISLANPGMSVE-------KVIYAAKLAGAH-------------------- 119
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
+ +L +T+VG++ G+SGGQR+R+ LV L DE ++ LD
Sbjct: 120 ------DFISELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDY 172
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
+ I+ ++ + I G +I + D II++ G+IV QG + +
Sbjct: 173 ESEHVIMRNM---HKICKGRTVIIIAH-RLSTVKNADRIIVMEKGKIVEQGKHKEL 224
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 90.6 bits (225), Expect = 1e-20
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 21/223 (9%)
Query: 669 LPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKT 728
+ + + D +++ + D++ +L ++ + G A +G++G GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 729 TLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCE--QNDIHSPYVTVYESLLYSA 786
TL++++ +G I I G+ + Q D TV E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR 116
Query: 787 WLRLSSEVNSKTREMFVEEVMELVELNPLR-QALVGLPGVNGLSTEQRKRLTIAVELVAN 845
EV + + + + P VG GV LS Q++RL+IA + N
Sbjct: 117 PTATDEEVVEAAK---MANAHDFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNN 172
Query: 846 PSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888
P I+ +DE TS LD + +++ + + RT + H+ S
Sbjct: 173 PPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS 214
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 83.3 bits (206), Expect = 3e-18
Identities = 50/231 (21%), Positives = 90/231 (38%), Gaps = 43/231 (18%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYIS--QHDIH 58
+G G GK+TL+ + D + SG++ +GH++ +F+ I Q D
Sbjct: 46 TVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNI 102
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANV 118
+ TV+E + +AAK+ A+ F
Sbjct: 103 LFSDTVKENILLG----------RPTATDEEVVEAAKM---ANAHDF------------- 136
Query: 119 ITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS 178
+++L DT VG E +SGGQ++R++ + + L +DE ++ LD
Sbjct: 137 -------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 179 TTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 229
+ I +L + + T LI + D I+++ +G IV G
Sbjct: 189 SESIIQEALDVLSK--DRTTLIVAHR--LSTITHADKIVVIENGHIVETGT 235
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 90.0 bits (223), Expect = 1e-20
Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 24/194 (12%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG-RKTRGYIT-GNITISGYPKNQETFTR 761
L +SG R G + L+G G+GK+TL+ +AG +G I + + +
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LAL 72
Query: 762 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG 821
Y Q V+ L + KTR + +V + L+
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQ--------HDKTRTELLNDVAGALALDDKLGRSTN 124
Query: 822 LPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAVVMRTVRNTV 874
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 125 -----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC 179
Query: 875 DTGRTVVCTIHQPS 888
G +V + H +
Sbjct: 180 QQGLAIVMSSHDLN 193
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 68.4 bits (167), Expect = 3e-13
Identities = 39/238 (16%), Positives = 68/238 (28%), Gaps = 56/238 (23%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTA---AYISQHDIHIG 60
L+GP G+GK+TL+ +AG G + + G + + + A AY+SQ
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF 85
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
V L + + +
Sbjct: 86 ATPVWHYLTLH---------------------------------------QHDKTRTELL 106
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
+ + L LD +SGG+ +RV +++ LD
Sbjct: 107 NDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMN 161
Query: 181 FHIVNSLGQFNHIL-----NGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
V + IL G A++ L+ G+++ G E V
Sbjct: 162 SLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 87.3 bits (216), Expect = 1e-19
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 12/193 (6%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQET 758
++V+ ++ G +G +G GK+TL+ ++AG +T + I N
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTP 68
Query: 759 FTRIS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 817
G Q+ P+++V E++ + L + V +V E+++L L
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLD 125
Query: 818 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DT 876
LS QR+R+ I LVA PS+ +DEP S LDA + +
Sbjct: 126 RKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 877 GRTVVCTIHQPSI 889
GRT++ H
Sbjct: 181 GRTMIYVTHDQVE 193
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 76.9 bits (189), Expect = 4e-16
Identities = 47/252 (18%), Positives = 87/252 (34%), Gaps = 52/252 (20%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTA-AYISQHDIHIGEM 62
+GP G GK+TL+ +AG + SG + M++ P + Q +
Sbjct: 31 FVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 87
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
+V E ++F + G ++ ++
Sbjct: 88 SVAENMSFGLKLAGAKKE-------VINQRVNQV-------------------------- 114
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 182
+VL L D +SGGQR+RV G LV +DE + LD++
Sbjct: 115 -AEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 168
Query: 183 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGF 242
+ + + + L T + E L D I+++ G++ G + +
Sbjct: 169 MRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLEL--------Y 219
Query: 243 KCPKRKGIADFL 254
P + +A F+
Sbjct: 220 HYPADRFVAGFI 231
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.0 bits (210), Expect = 9e-19
Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 9/190 (4%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP---KNQETFT 760
L G++ RPG +TAL+G GSGK+T+ +L G + + G P
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHRYLH 87
Query: 761 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 820
R Q ++ E++ Y + + E + + L V
Sbjct: 88 RQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVK-SGAHSFISGLPQGYDTEV 145
Query: 821 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRT 879
G LS QR+ + +A L+ P ++ +D+ TS LDA + V + + + + R+
Sbjct: 146 DEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 204
Query: 880 VVCTIHQPSI 889
V+ S+
Sbjct: 205 VLLITQHLSL 214
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.5 bits (188), Expect = 7e-16
Identities = 44/236 (18%), Positives = 87/236 (36%), Gaps = 42/236 (17%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQHDI 57
+T L+GP GSGK+T+ L + G++ +G + ++ + R A + Q +
Sbjct: 42 VTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQ-EP 97
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+ +++E +A+ K + E A
Sbjct: 98 QVFGRSLQENIAYGLT--------------------------------QKPTMEEITAAA 125
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
V + + L DT V E +SGGQR+ V L+ L +D+ ++ LD+
Sbjct: 126 VKSGAHSFISGLPQGYDTEVD-EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 184
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
++ + L + + + L+ + D I+ + G I G + +
Sbjct: 185 NSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFLEGGAIREGGTHQQL 238
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 83.4 bits (206), Expect = 3e-18
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 11/196 (5%)
Query: 697 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYP 753
+DD +L +S +P + A G +G GK+T+ +L + T G IT I
Sbjct: 11 YDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNI- 69
Query: 754 KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 813
+ E + G+ Q+ T+ E+L Y + E + ++ VE
Sbjct: 70 -SLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDL--AFARSFVENM 125
Query: 814 PLRQA-LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 872
P + VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + +
Sbjct: 126 PDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184
Query: 873 TVDTGRTVVCTIHQPS 888
+ GRT + H+ S
Sbjct: 185 -LMKGRTTLVIAHRLS 199
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 68.0 bits (166), Expect = 6e-13
Identities = 46/231 (19%), Positives = 77/231 (33%), Gaps = 42/231 (18%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYIS--QHDIH 58
+ GP G GK+T+ L + +G++T +G + + + I D
Sbjct: 30 IIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSA 86
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANV 118
I T+RE L + +++L+ + +PD
Sbjct: 87 IMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL----------------- 129
Query: 119 ITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS 178
+T VG E ISGGQR+R+ + L +DE + LDS
Sbjct: 130 ---------------NTEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173
Query: 179 TTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 229
+ + +L T L+ + D I + GQI G
Sbjct: 174 SESMVQKALDSLMK--GRTTLVIAHR--LSTIVDADKIYFIEKGQITGSGK 220
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 81.9 bits (202), Expect = 9e-18
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKN 755
++ + +S + G L+G +G GKTT + ++AG +RG I G+ ++ K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 756 QETFTRISG--YCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 813
+ Q+ P++TVY+++ + LR +V + + V EV EL+ L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLT 130
Query: 814 PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT 873
L LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 131 ELLNRKPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 874 V-DTGRTVVCTIHQPS 888
G T + H
Sbjct: 186 QRQLGVTTIYVTHDQV 201
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 69.6 bits (170), Expect = 1e-13
Identities = 47/251 (18%), Positives = 84/251 (33%), Gaps = 44/251 (17%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
LLGP G GKTT + +AG + S G++ + ++ D I +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVA---DPEKGIFVPPKDRDIAMVF 87
Query: 64 VRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYI 123
L + L ++ R+E ++ +
Sbjct: 88 QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV------------------------REV 123
Query: 124 LKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHI 183
++L L + + +SGGQR+RV G +V MDE + LD+ +
Sbjct: 124 AELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 184 VNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFK 243
L + L T + E + D I +++ G + G + V +
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEV--------YD 229
Query: 244 CPKRKGIADFL 254
P +A F+
Sbjct: 230 KPANTFVAGFI 240
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 80.5 bits (198), Expect = 3e-17
Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 13/194 (6%)
Query: 700 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT--GNITISGYPKN 755
K+V L+ V+ G ++G +G+GKTT M ++AG + G + + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 756 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 815
R G Q P +T +E++ + +++ + VEEV ++++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHV 133
Query: 816 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV- 874
LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 875 DTGRTVVCTIHQPS 888
G T++ H P+
Sbjct: 189 RLGVTLLVVSHDPA 202
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 74.0 bits (181), Expect = 5e-15
Identities = 48/257 (18%), Positives = 88/257 (34%), Gaps = 57/257 (22%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ------RTAAYISQHDI 57
+LGP G+GKTT M +AG S +G++ ++ + R + Q
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+T E +AF + R++ ++ DI + RE
Sbjct: 93 LYPNLTAFENIAFPLTNMKMSKEE-------IRKRVEEVAKILDIHHVLNHFPRE----- 140
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
+SG Q++RV LV L +DE + LD+
Sbjct: 141 ---------------------------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFF 237
+ + L T L+ PA +++ + D + ++ G++V G E +
Sbjct: 174 RMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDL---- 228
Query: 238 ISMGFKCPKRKGIADFL 254
+ P +A +
Sbjct: 229 ----YDNPVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 71.6 bits (175), Expect = 3e-14
Identities = 39/188 (20%), Positives = 71/188 (37%), Gaps = 15/188 (7%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG-YPKNQETFTRI 762
L+ +S G ++G TG+GKT ++++AG I + G +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 763 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL 822
+ QN P++ V ++L + + V + +++ L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRM------KKIKDPKRVLDTARDLKIEHLLDRN--- 124
Query: 823 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVV 881
LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 --PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 882 CTIHQPSI 889
H +
Sbjct: 183 HITHDQTE 190
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 68.5 bits (167), Expect = 2e-13
Identities = 51/252 (20%), Positives = 91/252 (36%), Gaps = 55/252 (21%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQR-TAAYISQHDIHIGEM 62
+LGP G+GKT + +AG SG++ +G D+ + P++ A++ Q+ M
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM 87
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
V++ L F R + + ++
Sbjct: 88 NVKKNLEFGMRMKKI----------KDPKRVLDT-------------------------- 111
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 182
+ L ++ D +SGG+++RV LV L +DE + LD T +
Sbjct: 112 -ARDLKIEHLLD-----RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 183 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGF 242
L + T L E + D I +V DG+++ G E + F
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEI--------F 216
Query: 243 KCPKRKGIADFL 254
+ P +A F+
Sbjct: 217 EKPVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 67.7 bits (165), Expect = 5e-13
Identities = 46/231 (19%), Positives = 82/231 (35%), Gaps = 46/231 (19%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTA-AYISQHDIHIGEM 62
LLGP G+GK+ + +AG + G+V NG D+ P+R ++ Q +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
+V +A+ R R + E+
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREM----------------------------------- 110
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 182
+ + D +SGG+R+RV LV L +DE + +D T
Sbjct: 111 ------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 183 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
++ L + L E L D++ ++ +G+IV +G L+ +
Sbjct: 165 LMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 64.6 bits (157), Expect = 6e-12
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 18/180 (10%)
Query: 713 PGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFTRISGYCEQN 769
L+G TG+GK+ ++++AG + RG + I+ P + R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 770 DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 829
P+++VY ++ Y V R+ V E+ E + + L LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLS 128
Query: 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPS 888
+R+R+ +A LV P ++ +DEP S +D + V+M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 45.8 bits (107), Expect = 8e-06
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEM 62
++ G PG GKTTL+ + +L + E + I+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFM 106
+ T GV +Y + + E+A + V +
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVII 104
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 42.3 bits (98), Expect = 9e-05
Identities = 18/175 (10%), Positives = 32/175 (18%), Gaps = 33/175 (18%)
Query: 718 ALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVT 777
+ G G GKTTL+ + R + R ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR--AIGFWTEE--------VRDPETKKRTGFRIITTE 53
Query: 778 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLT 837
+ + + L +
Sbjct: 54 GKKKIF----------------------SSKFFTSKKLVGSYGVNVQYFEELAIPILERA 91
Query: 838 IAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIF 892
+I +DE + D VV TI +
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL 145
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 45.0 bits (105), Expect = 1e-05
Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 3/137 (2%)
Query: 6 GPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVR 65
G+GKTTL+ L L + H H+ + + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALC---ARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 66 ETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILK 125
+ A ++ ++ + ++ F + + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 126 VLDLDVCADTVVGDEML 142
L +D V D L
Sbjct: 126 ELVIDRHVIAVASDVPL 142
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Score = 40.6 bits (94), Expect = 3e-04
Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 3/128 (2%)
Query: 6 GPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVR 65
G SGKTTLM G V ++GH P+ + + +
Sbjct: 8 GYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVATAVEG 67
Query: 66 ETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVR---EGQEANVITDY 122
+ L + + D+L + ++ + K V+ E +
Sbjct: 68 DGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKVVLVRSEEDWASLQHLAN 127
Query: 123 ILKVLDLD 130
I V+ +
Sbjct: 128 IRAVIAWE 135
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Score = 40.6 bits (94), Expect = 9e-04
Identities = 25/130 (19%), Positives = 40/130 (30%), Gaps = 10/130 (7%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
+ G PG+GK+T + A L ++ KV D D
Sbjct: 59 VTGTPGAGKSTFLEAFGMLL---IREGLKVAVIAVDPSS----PVTGGSILGDKTRMNDL 111
Query: 64 VRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYI 123
R AF + V S + R + + A DV + V GQ + +
Sbjct: 112 ARAEAAF---IRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMV 168
Query: 124 LKVLDLDVCA 133
+ L +
Sbjct: 169 DCFISLQIAG 178
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Score = 39.4 bits (91), Expect = 0.001
Identities = 15/97 (15%), Positives = 30/97 (30%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEM 62
++G PGSGK T+ + + +SG + + + +I Q + ++
Sbjct: 10 AIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDV 69
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPD 99
R L D + +A
Sbjct: 70 MTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQ 106
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Score = 39.2 bits (90), Expect = 0.001
Identities = 29/119 (24%), Positives = 37/119 (31%), Gaps = 7/119 (5%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEM 62
LL G PG GKTTL LA K G N D+ + E
Sbjct: 8 LLTGTPGVGKTTLGKELASKS-------GLKYINVGDLAREEQLYDGYDEEYDCPILDED 60
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
V + L R GV Y R + D +V + + G +TD
Sbjct: 61 RVVDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTD 119
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 38.3 bits (88), Expect = 0.002
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEM 62
LLLGPPG+GK T + LA KL ++G++ + + Y+ D+ ++
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDL 63
Query: 63 TVR 65
T
Sbjct: 64 TNE 66
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.3 bits (90), Expect = 0.003
Identities = 17/127 (13%), Positives = 34/127 (26%), Gaps = 11/127 (8%)
Query: 784 YSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELV 843
+A L + E + L + G V L+ L A+
Sbjct: 299 GNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALA------LLFAINSY 352
Query: 844 ANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI-----DIFEAFDAG 898
+DE + LD + +R + + + ++ + +
Sbjct: 353 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYRQQ 412
Query: 899 IPGVSKI 905
SKI
Sbjct: 413 QENSSKI 419
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 37.3 bits (85), Expect = 0.004
Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 6/95 (6%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEM 62
++ GP G GK+T LA +LD G ++ V ++
Sbjct: 6 IITGPAGVGKSTTCKRLAAQLD------NSAYIEGDIINHMVVGGYRPPWESDELLALTW 59
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKII 97
L + D + E A+ +
Sbjct: 60 KNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTV 94
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1245 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.78 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.75 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.55 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.46 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.31 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.04 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.98 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.91 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.75 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.6 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.58 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.35 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.71 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.68 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.63 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.57 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.55 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.29 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.28 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.1 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 97.0 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.98 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.96 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.87 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.74 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.68 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.67 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.63 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.63 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.62 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.59 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.52 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.49 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.46 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.46 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.45 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.42 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.36 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.31 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.28 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.28 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.25 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.23 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.23 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.22 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.18 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.18 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.16 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.16 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.16 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.12 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.1 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.1 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.07 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.06 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.04 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.04 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.02 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.02 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.01 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.99 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.99 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.99 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.98 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.97 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.95 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.94 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.92 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.9 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.9 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.88 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.88 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.87 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.86 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.86 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.85 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.84 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.84 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.83 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.83 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.83 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.79 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.78 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.78 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.76 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.75 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.73 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.73 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.7 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.69 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.66 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.66 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.66 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.65 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.64 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.62 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.62 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.61 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.59 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.59 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.58 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.58 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.57 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.56 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.54 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.54 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.53 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.53 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.52 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.51 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.51 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.51 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.51 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.5 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.5 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.46 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.43 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.43 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.41 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.39 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.38 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.38 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.37 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.35 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.31 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.3 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.3 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.29 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.28 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.25 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.25 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.24 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.19 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 95.19 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.19 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.16 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.15 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.14 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.11 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.11 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.1 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.1 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.08 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.04 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.01 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.97 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.97 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.95 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.93 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.92 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.92 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.91 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.9 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.85 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.83 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.81 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.81 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.8 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.79 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.79 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.77 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.75 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.73 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.73 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.73 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.73 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.71 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.67 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 94.63 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.62 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.62 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.57 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.56 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.46 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.43 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.42 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.42 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.41 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.4 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.4 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.35 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.33 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.31 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.3 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.3 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.25 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.25 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.19 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.18 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.16 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.16 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.12 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.11 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.09 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.06 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.91 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.91 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.89 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.89 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.89 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.89 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.87 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.86 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.85 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.85 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.82 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.82 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.81 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.8 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.79 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.77 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.76 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.75 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.75 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.74 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.71 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.69 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.69 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.67 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.67 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.66 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.64 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.61 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.54 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.54 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.54 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.47 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.46 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.44 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.42 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.41 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.41 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.36 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.36 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.33 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 93.28 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.28 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.27 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.27 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.24 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.17 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.17 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.16 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.12 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 93.1 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.09 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 93.09 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.08 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.07 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.05 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.04 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.03 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.02 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.01 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.99 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.98 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.97 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.96 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.95 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.94 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 92.91 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.9 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.89 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.87 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.86 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.82 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.81 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.81 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.79 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.78 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.77 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.71 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.69 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.69 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.64 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.63 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.61 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.61 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.6 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.58 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.57 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.56 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.55 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.54 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.5 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.49 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.46 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.43 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.4 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.4 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.39 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.38 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.36 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.36 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.35 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.31 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.3 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.28 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.26 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.25 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.25 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.25 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.23 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.19 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.18 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.16 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.15 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.13 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.12 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.1 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.1 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.09 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.06 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.04 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.03 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 92.0 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.97 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.95 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.89 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.89 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.89 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 91.88 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.86 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 91.83 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.82 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 91.81 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.76 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.74 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.73 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 91.72 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.71 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.7 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.63 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.61 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.56 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.55 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.53 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.52 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.44 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.44 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.38 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 91.37 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.36 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.34 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 91.32 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.29 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.25 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 91.25 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.24 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 91.23 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.17 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.16 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.05 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.02 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.01 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.98 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.94 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.94 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.92 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.9 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.86 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.86 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.85 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.84 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.83 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.81 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.79 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.78 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 90.75 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 90.75 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.75 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 90.67 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.65 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.53 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 90.52 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.49 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 90.42 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.41 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 90.33 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.28 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.2 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 90.09 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 90.08 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.99 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.91 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.91 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.87 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.8 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 89.75 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.69 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 89.48 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.37 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.36 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.33 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.08 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 88.96 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 88.91 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.9 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 88.88 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 88.85 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.67 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.45 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.37 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 87.82 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.59 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 87.57 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 87.4 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 87.32 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.89 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.71 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.67 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.12 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.11 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 85.8 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 85.68 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 85.48 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 85.47 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 85.45 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 85.35 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 85.29 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.09 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 84.82 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 84.45 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 84.24 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 83.99 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 83.54 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 81.91 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.47 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 80.95 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 80.6 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.4 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=310.91 Aligned_cols=198 Identities=25% Similarity=0.355 Sum_probs=151.4
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 99995999994571000135346742022241799948849999869999789999999699999805799999795089
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++++. ...+|+|+|+.+++||+++|+||||||||||+++|+|..++ .+|+|.+||.+..
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p--~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEECC
T ss_conf 99999999989-------------99998111778869989999989998299999999658788--8888999999778
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 4-433341899724887899999999999998702998898778999999999982994322222368888867978999
Q 000872 756 Q-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834 (1245)
Q Consensus 756 ~-~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 834 (1245)
. ...++.+|||+|+..+++.+||+|++.|...++. .+.++.+++++++++.++|.+..+..+. .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHH
T ss_conf 886444322234334202643337889789998759---9889999999999975788656648965-----69999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHH
Q ss_conf 99999999629976589489999999999999999999873-8988999915888899998640
Q 000872 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 835 r~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~-~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
|++|||+|+.+|++|+|||||+|||+.++..+++.++++.+ .|.|+|+++|+.. ++..+=|+
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dr 200 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADK 200 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 9999999703998899758887889889989999999998742987999948999-99996999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=308.66 Aligned_cols=199 Identities=22% Similarity=0.334 Sum_probs=172.9
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 89999599999457100013534674202224179994884999986999978999999969999980579999979508
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++.++. ...+|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p--~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 499987999999-------------99998130678879989999999998299999999758999--878799916413
Q ss_pred CC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 94-43334189972488789999999999999870299889877899999999998299432222236888886797899
Q 000872 755 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 755 ~~-~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 833 (1245)
.. ...++.+|||+|+..+++.+||+|++.|.+.++ ..+.++.+++++++++.++|.+..+..+ ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHH
T ss_conf 547700015899800335342220999999999873---9999999999999998759855660995-----46999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHH
Q ss_conf 9999999996299765894899999999999999999998738-988999915888899998640
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 834 kr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~-~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
||++|||+|+.+|++|+|||||+|||+.++..+++.++++.++ |.|+|+++|++. ++.++-|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dr 206 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDR 206 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 89999766404998243068866689899989999999998731980799948999-99986999
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=308.28 Aligned_cols=190 Identities=25% Similarity=0.402 Sum_probs=162.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999837999995899979819989999612599989914898765-4228976655465778898999999976228887
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~-~~~i~yv~Q~d~l~~~lTVrEnL~f~~~l~~~~~ 79 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... ++.+|||+|++.+++++||+||+.|+.+ ..
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~--~~-- 98 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR--NV-- 98 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCT--TS--
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHHHC--CC--
T ss_conf 99999799980999999997399989---628999999988699899285225231443522015576665323--36--
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 63023451199985103998225789999883112212369999988197333444336865434661100145899998
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRlsIAraL 159 (1245)
.+.+ .++.++++++.+||.+..+..+. .||||||||++||||+
T Consensus 99 --------~~~~------------------------~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral 141 (240)
T d2onka1 99 --------ERVE------------------------RDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARAL 141 (240)
T ss_dssp --------CHHH------------------------HHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHH
T ss_pred --------CHHH------------------------HHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHH
T ss_conf --------7788------------------------99999999986383756657944-----4899998999998777
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCHHHHHH
Q ss_conf 4497074552798683759899999999997661598899994389846896201368834872888669104999
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 160 ~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~~~l~~ 235 (1245)
+.+|++++|||||||||+.++..+++.++.+.+.. +++++.++|...++..++|+|++|++|+++++|+.+++.+
T Consensus 142 ~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~-g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF-DVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHH-TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHC
T ss_conf 51677067528655588799999999999998743-9769998189999999699999998999999906999832
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=305.62 Aligned_cols=194 Identities=21% Similarity=0.281 Sum_probs=155.9
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 99995999994571000135346742022241799948849999869999789999999699999805799999795089
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++.+|+++++. . .+|+||||.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p--~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------C-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEECC
T ss_conf 89998999949-------------9-788433789879989999989998299999999647688--8788999567346
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 4-433341899724887899999999999998702998898778999999999982994322222368888867978999
Q 000872 756 Q-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834 (1245)
Q Consensus 756 ~-~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 834 (1245)
. ...++.+|||+|+..++|.+||+|++.|...++... . +++++++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC---H---HHHHHHHHHHHCCHHHHHCCH-----HHCCHHHHC
T ss_conf 52165740561512111174665778888877640553---8---999999999825655575895-----547999840
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHH
Q ss_conf 99999999629976589489999999999999999999873-8988999915888899998640
Q 000872 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 835 r~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~-~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
|++|||+|+.+|++|+|||||+|||+.++..+++.++++.+ .|.|||+++|++. ++.++-|+
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~dr 197 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADR 197 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSE
T ss_pred CHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCE
T ss_conf 1403043443677144347876799899999999999998647968999749999-99996999
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=305.82 Aligned_cols=199 Identities=25% Similarity=0.336 Sum_probs=173.0
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 89999599999457100013534674202224179994884999986999978999999969999980579999979508
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++.++. ...+|+|||+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p--~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred CEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEE
T ss_conf 189986999989-------------99998560668869989999999998099999999648788--989899999980
Q ss_pred CC---C----CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 94---4----3334189972488789999999999999870299889877899999999998299432222236888886
Q 000872 755 NQ---E----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 827 (1245)
Q Consensus 755 ~~---~----~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~ 827 (1245)
.. . ..++.+|||+|+..++|.+||+|++.|...++ ..+.++.+++++++++.++|.+..+..+ +.
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HH
T ss_conf 356644424532255120022122231011667633068772---9998999999999998759966762993-----34
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHH
Q ss_conf 7978999999999996299765894899999999999999999998738-988999915888899998640
Q 000872 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 828 lSgGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~-~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
||||||||++|||+|+.+|++|++||||+|||+.++..+++.++++.++ |.|||+++|+.. ++...-|+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~dr 209 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDR 209 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-99996999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.4e-45 Score=300.04 Aligned_cols=192 Identities=24% Similarity=0.386 Sum_probs=166.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999837999995899979819989999612599989914898765-4228976655465778898999999976228887
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~-~~~i~yv~Q~d~l~~~lTVrEnL~f~~~l~~~~~ 79 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... ++.+|||+|++.+++++||+||+.|+..+++.
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~-- 108 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF-- 108 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CC--
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHCCC--
T ss_conf 99999999982999999997589998---7879991641354770001589980033534222099999999987399--
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 63023451199985103998225789999883112212369999988197333444336865434661100145899998
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRlsIAraL 159 (1245)
.+. +.+..++++++.++|++..|..+ ..||||||||++|||||
T Consensus 109 --------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRvaiAraL 151 (239)
T d1v43a3 109 --------PKD------------------------EIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAI 151 (239)
T ss_dssp --------CHH------------------------HHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHH
T ss_pred --------CHH------------------------HHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHH
T ss_conf --------999------------------------99999999998759855660995-----46999998899997664
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCHHHHHH
Q ss_conf 4497074552798683759899999999997661598899994389846896201368834872888669104999
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 160 ~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~~~l~~ 235 (1245)
+.+|+|++|||||+|||+.++..+++.++++.+.. +.+++.++|...++..++|+|++|++|++++.|+.+++..
T Consensus 152 ~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~-g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 152 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 04998243068866689899989999999998731-9807999489999998699999998999999859999986
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=9.8e-45 Score=295.35 Aligned_cols=192 Identities=26% Similarity=0.374 Sum_probs=165.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC-------CCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99983799999589997981998999961259998991489876-------54228976655465778898999999976
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV-------PQRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~-------~~~~i~yv~Q~d~l~~~lTVrEnL~f~~~ 73 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.+|||+|++.+++.+||+||+.|+..
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~ 107 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHH
T ss_conf 99999999980999999996487889---898999999803566444245322551200221222310116676330687
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 22888763023451199985103998225789999883112212369999988197333444336865434661100145
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRV 153 (1245)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRl 153 (1245)
.++. ... +.++.++++++.++|++..|..++ .||||||||+
T Consensus 108 ~~~~----------~~~------------------------e~~~~v~~~l~~~~l~~~~~~~p~-----~LSGGqkQRv 148 (240)
T d1g2912 108 LRKV----------PRQ------------------------EIDQRVREVAELLGLTELLNRKPR-----ELSGGQRQRV 148 (240)
T ss_dssp HTTC----------CHH------------------------HHHHHHHHHHHHHTCGGGTTCCGG-----GSCHHHHHHH
T ss_pred HCCC----------CHH------------------------HHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHH
T ss_conf 7299----------989------------------------999999999987599667629933-----4999999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCHHHH
Q ss_conf 89999844970745527986837598999999999976615988999943898468962013688348728886691049
Q 000872 154 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 154 sIAraL~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~~~l 233 (1245)
+|||||+.+|++++|||||+|||+.++..+++.++++.+.. +++++.++|...++..++|+|++|.+|++++.|+++++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el 227 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 99999826998898258876569899989999999998636-98899995999999996999999989999998599999
Q ss_pred HH
Q ss_conf 99
Q 000872 234 EQ 235 (1245)
Q Consensus 234 ~~ 235 (1245)
..
T Consensus 228 ~~ 229 (240)
T d1g2912 228 YD 229 (240)
T ss_dssp HH
T ss_pred HH
T ss_conf 82
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=300.33 Aligned_cols=192 Identities=24% Similarity=0.394 Sum_probs=167.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999837999995899979819989999612599989914898765-4228976655465778898999999976228887
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~-~~~i~yv~Q~d~l~~~lTVrEnL~f~~~l~~~~~ 79 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.+... ++.+|||+|++.+++.+||+||+.|+..+++..
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~- 103 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK- 103 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------------
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC-
T ss_conf 99999899982999999996587888---88899999977888644432223433420264333788978999875998-
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 63023451199985103998225789999883112212369999988197333444336865434661100145899998
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRlsIAraL 159 (1245)
.++.++.++.+++.++|.+..|..+. .||||||||++|||||
T Consensus 104 ---------------------------------~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQRvaiAraL 145 (232)
T d2awna2 104 ---------------------------------KEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ----------------------------------CHHHHHHHHHHHHC--------------------------CHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHH
T ss_conf ---------------------------------89999999999975788656648965-----6999999999999997
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCHHHHHH
Q ss_conf 4497074552798683759899999999997661598899994389846896201368834872888669104999
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 160 ~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~~~l~~ 235 (1245)
+.+|++++|||||+|||+.++.++++.|+++.+. .++|++.++|...++..++|+|++|++|++++.|+++++.+
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~-~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR-LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-SCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 0399889975888788988998999999999874-29879999489999999699999997999999808999973
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.2e-44 Score=292.29 Aligned_cols=204 Identities=23% Similarity=0.377 Sum_probs=171.2
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 99995999994571000135346742022241799948849999869999789999999699999805799999795089
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|+++++... .....+|+|+|+.+++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p--~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCC--CCCEEEECCEECC
T ss_conf 8999079994899---------8208987133778849979999889999821655750688777--7662699999857
Q ss_pred CC---C----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 44---3----33418997248878999999999999987029988987789999999999829943-2222236888886
Q 000872 756 QE---T----FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNG 827 (1245)
Q Consensus 756 ~~---~----~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~g~~~~~~ 827 (1245)
.. . .++.+|||+|+..+.|.+||.|++.+....+.....+.+++.+++.+.++.++|.+ ..+..+ ..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HH
T ss_conf 6885551231255577880412417686688877578887224789999999999998876242345534880-----23
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHH
Q ss_conf 7978999999999996299765894899999999999999999998738-988999915888899998640
Q 000872 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 828 lSgGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~-~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
||||||||++|||+|+.+|++|++||||++||+.++..+++.|+++.++ |.|+|+++|++. +-...|+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~dr 214 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGER 214 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHH--HHHHCCE
T ss_conf 89999999998756522788899468765469899999999999999843999999878889--9986998
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.2e-45 Score=297.51 Aligned_cols=201 Identities=26% Similarity=0.384 Sum_probs=173.7
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 89999599999457100013534674202224179994884999986999978999999969999980579999979508
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++.+|++++++. +...+|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p--~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEEEEEEECC-----------CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEE
T ss_conf 8999757999889-----------998998040789879989999989998099999999758688--874599999995
Q ss_pred CC------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 94------433341899724887899999999999998702998898778999999999982994322222368888867
Q 000872 755 NQ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 828 (1245)
Q Consensus 755 ~~------~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~l 828 (1245)
.. ...++.+|||+|+..++|.+||+|++.|....+ ..+.++.+++++++++.+||.+..+..++ .|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----EL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCHH-----HC
T ss_conf 13731115312045147730433466665777766556761---37999999999999866591766648954-----59
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHH
Q ss_conf 978999999999996299765894899999999999999999998738-988999915888899998640
Q 000872 829 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 829 SgGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~-~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
|||||||++|||+|+.+|++|++||||+|||+.++..+++.++++.++ |.|+|+++|++. ++.+.-|+
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dr 210 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADR 210 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-99996999
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=301.36 Aligned_cols=202 Identities=22% Similarity=0.293 Sum_probs=172.5
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 99995999994571000135346742022241799948849999869999789999999699999805799999795089
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|++.++... .....+|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p--~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC--SEEEEEETTEEEC
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCC--CCCCEEECCEEEE
T ss_conf 7998279996999---------8148986150578869979999899989888999987588636--6773288676852
Q ss_pred C------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4------4333418997248878999999999999987029988987789999999999829943222223688888679
Q 000872 756 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 829 (1245)
Q Consensus 756 ~------~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lS 829 (1245)
. ..+++.+|||+|+..+++.+||+|++.+...++. .+.++.+++++++++.+||.+..+..+ ..||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHHCCH-----HHCC
T ss_conf 08755511554166430225222799649999999999849---998999999999999769903554894-----3499
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHH
Q ss_conf 78999999999996299765894899999999999999999998738-988999915888899998640
Q 000872 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 830 gGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~-~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
||||||++|||+|+.+|++|++||||+|||+.++..+++.|+++.++ |.|||+++|+.. ++...-|+
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dr 210 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDC 210 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-99986999
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-44 Score=294.10 Aligned_cols=190 Identities=24% Similarity=0.356 Sum_probs=165.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC------CCEEEEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 999837999995899979819989999612599989914898765------42289766554657788989999999762
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP------QRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~------~~~i~yv~Q~d~l~~~lTVrEnL~f~~~l 74 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... |+.+|||+|+..+++.+||+||+.|+..+
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~ 109 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99998999898889999875886366---773288676852087555115541664302252227996499999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 28887630234511999851039982257899998831122123699999881973334443368654346611001458
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRls 154 (1245)
.+.. .+++++.++.+++.+||++..|...+ .||||||||++
T Consensus 110 ~~~~----------------------------------~~~~~~~v~~~L~~vgL~~~~~~~~~-----~LSGG~~QRva 150 (240)
T d3dhwc1 110 DNTP----------------------------------KDEVKRRVTELLSLVGLGDKHDSYPS-----NLSGGQKQRVA 150 (240)
T ss_dssp TTCC----------------------------------TTHHHHHHHHHHHHHSTTTTTSSCBS-----CCCHHHHHHHH
T ss_pred CCCC----------------------------------HHHHHHHHHHHHHHCCCCHHHHCCHH-----HCCHHHHHHHH
T ss_conf 4999----------------------------------89999999999997699035548943-----49999998999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCHHHH
Q ss_conf 9999844970745527986837598999999999976615988999943898468962013688348728886691049
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233 (1245)
Q Consensus 155 IAraL~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~~~l 233 (1245)
|||||+.+|+++++||||+|||+.++..|++.|+.+.+.. +.+++.++|...++..++|+|++|++|++++.|+.+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHH-CCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 8640105898687446556589888567999999998646-97899983899999986999999979999998799999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=303.59 Aligned_cols=192 Identities=23% Similarity=0.319 Sum_probs=164.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC------CCCEEEEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99983799999589997981998999961259998991489876------542289766554657788989999999762
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARC 74 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~------~~~~i~yv~Q~d~l~~~lTVrEnL~f~~~l 74 (1245)
+.+|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.+|||+|++.+++.+||+||+.|+...
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~ 109 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN 109 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999899980999999997586888---745999999951373111531204514773043346666577776655676
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 28887630234511999851039982257899998831122123699999881973334443368654346611001458
Q 000872 75 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVT 154 (1245)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRls 154 (1245)
.+. .+ ++.++.++++++.+||.+..|...+ .||||||||++
T Consensus 110 ~~~----------~~------------------------~~~~~~v~~~l~~~gL~~~~~~~p~-----~LSGGqkQRva 150 (242)
T d1oxxk2 110 MKM----------SK------------------------EEIRKRVEEVAKILDIHHVLNHFPR-----ELSGAQQQRVA 150 (242)
T ss_dssp SSC----------CH------------------------HHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHH
T ss_pred HCC----------CH------------------------HHHHHHHHHHHHHCCHHHHHHCCHH-----HCCHHHHHHHH
T ss_conf 137----------99------------------------9999999999866591766648954-----59999985899
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCHHHHH
Q ss_conf 99998449707455279868375989999999999766159889999438984689620136883487288866910499
Q 000872 155 TGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 155 IAraL~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~~~l~ 234 (1245)
|||||+.+|+++++||||+|||+.++..+++.++++.+.. +.+++.++|...++..++|+|++|++|++++.|+++++.
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~-g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 8757760466145447866799899889989999998635-987999979999999969999999899999986999998
Q ss_pred H
Q ss_conf 9
Q 000872 235 Q 235 (1245)
Q Consensus 235 ~ 235 (1245)
.
T Consensus 230 ~ 230 (242)
T d1oxxk2 230 D 230 (242)
T ss_dssp H
T ss_pred H
T ss_conf 6
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=302.02 Aligned_cols=191 Identities=23% Similarity=0.376 Sum_probs=82.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 99837999995899979819989999612599989914898765---422897665546577889899999997622888
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~---~~~i~yv~Q~d~l~~~lTVrEnL~f~~~l~~~~ 78 (1245)
++|+||||||||||+++|+|.++|+ +|+|.+||.++..... ++.++||+|++.++ +.||+|||.++.+-..
T Consensus 32 vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~-- 105 (241)
T d2pmka1 32 IGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLANPGMS-- 105 (241)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTSTTCC--
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCCCCCC--
T ss_conf 9999999998999999997357888---889999999944002465535288982446557-8400035223575543--
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 76302345119998510399822578999988311221236999998819733344433686543466110014589999
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRlsIAra 158 (1245)
.+.....++. ....-....+++..+|.+|+.+. .||||||||++||||
T Consensus 106 --~~~~~~~~~~-----------------------------~~~~~~i~~~~~~~~t~i~~~g~-~LSGGq~QRvalARa 153 (241)
T d2pmka1 106 --VEKVIYAAKL-----------------------------AGAHDFISELREGYNTIVGEQGA-GLSGGQRQRIAIARA 153 (241)
T ss_dssp --HHHHHHHHHH-----------------------------HTCHHHHTTSTTGGGSBCSTTTT-CCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHH-----------------------------HHHHHHHHHHHCCHHHHCCCCCC-CCCHHHHHHHHHHHH
T ss_conf --8889999999-----------------------------75578887632013443278788-669889898754434
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCHHHHH
Q ss_conf 8449707455279868375989999999999766159889999438984689620136883487288866910499
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 159 L~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~~~l~ 234 (1245)
++.+|+|++||||||+||+.++..|++.|+...+ ++|++.++|.... ...+|+|++|++|+++++|+++++.
T Consensus 154 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~---~~Tvi~itH~l~~-~~~~D~i~vl~~G~Iv~~G~~~ell 225 (241)
T d2pmka1 154 LVNNPKILIFDEATSALDYESEHVIMRNMHKICK---GRTVIIIAHRLST-VKNADRIIVMEKGKIVEQGKHKELL 225 (241)
T ss_dssp HTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT---TSEEEEECSSGGG-GTTSSEEEEEETTEEEEEECHHHHH
T ss_pred HHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC---CCEEEEEECCHHH-HHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 4416513556477655598999999999999858---9989999788999-9849999999899999988999998
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-45 Score=302.00 Aligned_cols=201 Identities=23% Similarity=0.336 Sum_probs=145.0
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 89999599999457100013534674202224179994884999986999978999999969999980579999979508
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++++|+.. ....+|+|+|+.+++||++||+||||||||||+++|.|...+ .+|+|.+||.+.
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p--~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP--TGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred EEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 69999989988999----------999767443899849989999999998499999998614378--768998899853
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 94---43334189972488789999999999999870299889877899-----99999999829943222223688888
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRE-----MFVEEVMELVELNPLRQALVGLPGVN 826 (1245)
Q Consensus 755 ~~---~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~~~~g~~~~~ 826 (1245)
.. ..+++.++||+|+..+++ .|++|++.+.... ........ ....+.++ ++.+..++.++..+ .
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~~-~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEAG-S 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSSC-S
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCCC-C
T ss_conf 11013788877654045650027-6346554542101----302788999999998999998--56121113675167-6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHH
Q ss_conf 67978999999999996299765894899999999999999999998738-988999915888899998640
Q 000872 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 827 ~lSgGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~-~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
.||||||||++|||+|+.+|+|++|||||++||+.++..+++.|+++.++ ++|+|+++|+++ ..+..|+
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDr 220 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADH 220 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSE
T ss_pred CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCE
T ss_conf 689547048998604456870787167576568536899999999976506989999959799--9985999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.9e-44 Score=291.11 Aligned_cols=188 Identities=24% Similarity=0.374 Sum_probs=164.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999837999995899979819989999612599989914898765-4228976655465778898999999976228887
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~-~~~i~yv~Q~d~l~~~lTVrEnL~f~~~l~~~~~ 79 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++++... ++.+||++|++.+++.+||+||+.|+...++...
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~ 104 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD 104 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCH
T ss_conf 99999899982999999996476888---788999567346521657405615121111746657788888776405538
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 63023451199985103998225789999883112212369999988197333444336865434661100145899998
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRlsIAraL 159 (1245)
++.++.+++.++|.+..|..++ .||||||||++|||||
T Consensus 105 -------------------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~QRvaiAraL 142 (229)
T d3d31a2 105 -------------------------------------PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALARAL 142 (229)
T ss_dssp -------------------------------------HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHHHHHHHHT
T ss_pred -------------------------------------HHHHHHHHHHHCCHHHHHCCHH-----HCCHHHHCCHHHHHHH
T ss_conf -------------------------------------9999999998256555758955-----4799984014030434
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCHHHHH
Q ss_conf 449707455279868375989999999999766159889999438984689620136883487288866910499
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 160 ~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~~~l~ 234 (1245)
+.+|++++|||||||||+.++.++++.++++.+. .+.+++.++|...++..++|+|++|.+|+++++|+++++.
T Consensus 143 ~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~-~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKK-NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 4367714434787679989999999999999864-7968999749999999969999999799999986999998
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.8e-43 Score=287.59 Aligned_cols=198 Identities=24% Similarity=0.318 Sum_probs=171.6
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 99995999994571000135346742022241799948849999869999789999999699999805799999795089
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++.+|++.++ +++.+|+|+|+.+++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 I~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p--~~G~i~i~G~~i~ 67 (238)
T d1vpla_ 3 VVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNVV 67 (238)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEETT
T ss_pred EEEEEEEEEE-------------CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEECC
T ss_conf 8999589999-------------999998062568848979999999999999999999669887--8887999867244
Q ss_pred C--CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 4--43334189972488789999999999999870299889877899999999998299432222236888886797899
Q 000872 756 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 833 (1245)
Q Consensus 756 ~--~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 833 (1245)
. ...++.++|+||+..+++.+|+.|++.|.+.++. ....+.++.++.+++.+++.+..+..++ .+|||||
T Consensus 68 ~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~ 139 (238)
T d1vpla_ 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMV 139 (238)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHH
T ss_pred CCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHHH
T ss_conf 6839887218675001546878667788898998617---9989999999999986797888850453-----3799898
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 9999999996299765894899999999999999999998738988999915888899998640
Q 000872 834 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 834 kr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
||++||++|+.+|++++|||||+|||+.++..+++.+++++++|+||++++|+.. ++...-|+
T Consensus 140 qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~dr 202 (238)
T d1vpla_ 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDR 202 (238)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSE
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 9999999986599988733798897989999999999999965998999959899-99996999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2e-44 Score=293.66 Aligned_cols=189 Identities=22% Similarity=0.293 Sum_probs=155.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-------CCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 999837999995899979819989999612599989914898765-------4228976655465778898999999976
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP-------QRTAAYISQHDIHIGEMTVRETLAFSAR 73 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~-------~~~i~yv~Q~d~l~~~lTVrEnL~f~~~ 73 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... ++.+|||+|++.+++.+||+||+.++..
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~ 109 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI 109 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHCCCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHH
T ss_conf 99998899998216557506887777---662699999857688555123125557788041241768668887757888
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCHH
Q ss_conf 22888763023451199985103998225789999883112212369999988197333-44433686543466110014
Q 000872 74 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVC-ADTVVGDEMLRGISGGQRKR 152 (1245)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~-~~T~VG~~~~~~LSGGQKqR 152 (1245)
.+..... .. ++..+.+.+.++.++|++. .+..+ ..||||||||
T Consensus 110 ~~~~~~~-------~~------------------------~~~~~~~~~~l~~~~L~~~~~~~~p-----~~LSGGqkQR 153 (230)
T d1l2ta_ 110 FKYRGAM-------SG------------------------EERRKRALECLKMAELEERFANHKP-----NQLSGGQQQR 153 (230)
T ss_dssp TCCSSCC-------CH------------------------HHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHH
T ss_pred HHCCCCC-------CH------------------------HHHHHHHHHHHHHHCHHHHHHCCCH-----HHCCHHHHHH
T ss_conf 7224789-------99------------------------9999999998876242345534880-----2389999999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCH
Q ss_conf 589999844970745527986837598999999999976615988999943898468962013688348728886691
Q 000872 153 VTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230 (1245)
Q Consensus 153 lsIAraL~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~ 230 (1245)
++|||||+.+|++++||||||+||+.++..|++.|+.+.+.. +++++.++|...++ ..+|+|++|++|+++++|+.
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~-g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED-GKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT-CCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHH-CCEEEEECCCHHHH-HHCCEEEEEECCEEEEECCC
T ss_conf 998756522788899468765469899999999999999843-99999987888999-86998999989999995257
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.2e-45 Score=297.59 Aligned_cols=197 Identities=23% Similarity=0.311 Sum_probs=149.7
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 89999599999457100013534674202224179994884999986999978999999969999980579999979508
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++|+++. ....+|+|||+.|++||++||+||||||||||+++|+|...+ .+|+|.+||.+.
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEET
T ss_pred EEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCCCC
T ss_conf 7999988999299-----------997635332899859999999999998599999998621688--846898788012
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCC
Q ss_conf 94---43334189972488789999999999999870299889877899999999998299432-------222236888
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-------RQALVGLPG 824 (1245)
Q Consensus 755 ~~---~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~g~~~ 824 (1245)
.. ..+++.++||+|+..++. .|+++++.+.. +..... +.++++++..++.+. .++.++..
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~----~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~- 149 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR----TEEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGEN- 149 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT----TSCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred CHHHHHHHHHEEEEEEECCCCCC-CCHHHHHHHCC----CCCCCH----HHHHHHHHHHHHHHHHHHCCCCCHHHHCCC-
T ss_conf 11106654206879950254478-62024332057----220899----999999999817999973554410143488-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 8867978999999999996299765894899999999999999999998738988999915888899998640
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
...||||||||++|||+|+.+|+|++|||||++||+.++..+++.|+++. +++|+|+++|+++ ..+.+|+
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~ 219 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADE 219 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCE
T ss_conf 89849999999999999954998899516444589889999999998752-2788999988799--9985999
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.1e-44 Score=293.42 Aligned_cols=193 Identities=24% Similarity=0.307 Sum_probs=166.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 99983799999589997981998999961259998991489876--5422897665546577889899999997622888
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~--~~~~i~yv~Q~d~l~~~lTVrEnL~f~~~l~~~~ 78 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.+.. .++.++||||++.+++++|++||+.|.+.+.+.
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~- 105 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS- 105 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCCC-
T ss_conf 99999999999999999996698878---88799986724468398872186750015468786677888989986179-
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 76302345119998510399822578999988311221236999998819733344433686543466110014589999
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 158 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRlsIAra 158 (1245)
... +.++.++..++.++|.+..+..++ .||||||||++||||
T Consensus 106 ---------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv~iA~a 147 (238)
T d1vpla_ 106 ---------SSS------------------------EIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARA 147 (238)
T ss_dssp ---------CHH------------------------HHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHH
T ss_pred ---------CHH------------------------HHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHHHHHHHHHHH
T ss_conf ---------989------------------------999999999986797888850453-----379989899999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCHHHHHHHH
Q ss_conf 8449707455279868375989999999999766159889999438984689620136883487288866910499999
Q 000872 159 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFF 237 (1245)
Q Consensus 159 L~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~~~l~~~f 237 (1245)
++.+|++++|||||+|||+.++..+++.++.++. .+.+++.++|...++..++|+|++|++|++++.|+++++...+
T Consensus 148 l~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~--~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 148 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 8659998873379889798999999999999996--5998999959899999969999999899999992899998652
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4.2e-45 Score=297.57 Aligned_cols=196 Identities=24% Similarity=0.367 Sum_probs=153.1
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 89999599999457100013534674202224179994884999986999978999999969999980579999979508
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|++|+++. ..+.+|+|||+.|++||++||+|+||||||||+++|+|...+ .+|+|.+||.+.
T Consensus 16 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 82 (255)
T d2hyda1 16 RIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNI 82 (255)
T ss_dssp CEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEEG
T ss_pred EEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCCEEC
T ss_conf 7999988999599-----------997606443899839989999889998099999999712786--300015399875
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCC
Q ss_conf 94---4333418997248878999999999999987029988987789999999999829943-------2222236888
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 824 (1245)
Q Consensus 755 ~~---~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~g~~~ 824 (1245)
.. ..+++.++||+|+..+++ .||+|++.|.. + .... +.+.++++..++.+ ..++.++..+
T Consensus 83 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g 152 (255)
T d2hyda1 83 KDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERG 152 (255)
T ss_dssp GGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGG
T ss_pred CCCCHHHHHHEEEEEECCCCCCC-CCHHHHHHCCC----C-CCCH----HHHHHHHHHHCCHHHHHHCCCCCCCHHCCCC
T ss_conf 30788886341456510156899-87999985158----6-7999----9999999996979999736242010333888
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 8867978999999999996299765894899999999999999999998738988999915888899998640
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
..||||||||++|||+|+.+|+|++|||||++||+.++..+++.|+++. +++|+|+++|+++ ....+|+
T Consensus 153 -~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ 221 (255)
T d2hyda1 153 -VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADK 221 (255)
T ss_dssp -TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSE
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCE
T ss_conf -9849999999999999855998999837654479779999999999875-3888999968999--9985999
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=305.50 Aligned_cols=195 Identities=27% Similarity=0.411 Sum_probs=105.2
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 99995999994571000135346742022241799948849999869999789999999699999805799999795089
Q 000872 676 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 755 (1245)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~ 755 (1245)
++++|++|+|+. .+.+|+|||+.++|||++||+||||||||||+++|+|...+ .+|+|.+||.+..
T Consensus 2 le~knvsf~Y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYDD------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSSS------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEECCC------------CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCC--CCCEEEECCEEEC
T ss_conf 799988998799------------98414225899859999999999999799999999996098--9877988998844
Q ss_pred C---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCCC
Q ss_conf 4---43334189972488789999999999999870299889877899999999998299-------4322222368888
Q 000872 756 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-------NPLRQALVGLPGV 825 (1245)
Q Consensus 756 ~---~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~g~~~~ 825 (1245)
. ..+++.++||+|+..+++. |++|++.+... .....+. +++.++..++ .+..++.++..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCC----CCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 24678887436797566545785-34543012445----5542356----77899999755542037421015236878-
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 867978999999999996299765894899999999999999999998738988999915888899998640
Q 000872 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 826 ~~lSgGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
..||||||||++|||+|+.+|+|++|||||++||+.++..+++.|++++ +|+|+|+++|+++ ....+|+
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~ 206 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADK 206 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCE
T ss_conf 9879999999999999852998999658865569889999988788871-7998999978799--9984999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.5e-44 Score=292.94 Aligned_cols=199 Identities=22% Similarity=0.321 Sum_probs=165.2
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEE
Q ss_conf 08999959999945710001353467420222417999488499998699997899999996999998057999997950
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 753 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~ 753 (1245)
.-++.+|++.++. ...+|+||||.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p--~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred EEEEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCCC
T ss_conf 0799961899989-------------98888302578889979999999998599999999678888--80389842443
Q ss_pred CCCC---C-CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 8944---3-3341899724887899999999999998702998898778999999999982-994322222368888867
Q 000872 754 KNQE---T-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV-ELNPLRQALVGLPGVNGL 828 (1245)
Q Consensus 754 ~~~~---~-~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~g~~~~~~l 828 (1245)
.... . .+..++|++|+..+++.+||+|++.+.+..+.. .+..++.++++++.+ ++.+..+..++ .|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLGG-----TL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBSS-----SS
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCHHHHHHCCHH-----HC
T ss_conf 446608888874235567655457763699999988873278----889999999999874176888758543-----38
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 978999999999996299765894899999999999999999998738988999915888899998640
Q 000872 829 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 829 SgGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
|||||||++||++|+.+|++|+|||||+|||+.++..+++.+++++++|+||++++|+.. ++.+.-|+
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~dr 208 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHY 208 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSE
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 999999999999998299874003988679999999999999999968998999958899-99996999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.9e-44 Score=292.55 Aligned_cols=202 Identities=24% Similarity=0.259 Sum_probs=161.6
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 89999599999457100013534674202224179994884999986999978999999969999980579999979508
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
-++.+|++.++. ...+|+|||+.+++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 iL~v~nlsk~yg-------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p--~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 699977899979-------------96887121799889979999999998499999999779768--873799999966
Q ss_pred CCC----CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCC----------CCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 944----3334189972488789999999999999870299----------88987789999999999829943222223
Q 000872 755 NQE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS----------SEVNSKTREMFVEEVMELVELNPLRQALV 820 (1245)
Q Consensus 755 ~~~----~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~----------~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 820 (1245)
... ..+..++|++|+..+++.+||.|++.++...+.. .....++..++++++++.+++.+..+..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH
T ss_conf 40569999983387257764247887423214301333034504566542135328999999999987619630205953
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 68888867978999999999996299765894899999999999999999998738988999915888899998640
Q 000872 821 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 821 g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
+ .||||||||++||++|+.+|++|+|||||+|||+.++..+++.+++++++|.||++++|+.. ++.+.-|+
T Consensus 149 ~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Dr 219 (254)
T d1g6ha_ 149 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDH 219 (254)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSE
T ss_pred H-----HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 5-----69918888999999997592723243976569999999999999999978998999947699-99986999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.4e-42 Score=279.46 Aligned_cols=200 Identities=22% Similarity=0.263 Sum_probs=167.9
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 89999599999457100013534674202224179994884999986999978999999969999980579999979508
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++.+|++.++. ...+|+|||+.+++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p--~~G~I~~~G~~i 66 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNI 66 (258)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCCEEECCEEE
T ss_conf 699997899989-------------99988150668869979999989998299999999747667--899779999993
Q ss_pred CCC----------------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-CC
Q ss_conf 944----------------3334189972488789999999999999870299889877899999999998299432-22
Q 000872 755 NQE----------------TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-RQ 817 (1245)
Q Consensus 755 ~~~----------------~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~ 817 (1245)
... ..++.+|||+|+..+++.+||.|++.+...... ..+..+.++++.++++.+++.+. .+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~ 144 (258)
T d1b0ua_ 67 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQG 144 (258)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred CCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 3677520000235176799974544899833231411010213656578762--99989999999999998299524430
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 22368888867978999999999996299765894899999999999999999998738988999915888899998640
Q 000872 818 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 818 ~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
..+ ..||||||||++||++|+.+|++|++||||+|||+.++..+++.+++++++|.|||+++|+.. ++..+-|+
T Consensus 145 ~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adr 218 (258)
T d1b0ua_ 145 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 218 (258)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCE
T ss_conf 682-----205677888989999984399878852455568878888998765541036883389948999-99986999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.5e-42 Score=281.67 Aligned_cols=189 Identities=25% Similarity=0.377 Sum_probs=157.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC----CCEEEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 999837999995899979819989999612599989914898765----4228976655465778898999999976228
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~----~~~i~yv~Q~d~l~~~lTVrEnL~f~~~l~~ 76 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... +..++|+||+..+++.+||+||+.+++....
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~ 110 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK 110 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 99999999985999999996788888---038984244344660888887423556765545776369999998887327
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 887630234511999851039982257899998831122123699999881-9733344433686543466110014589
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVL-DLDVCADTVVGDEMLRGISGGQRKRVTT 155 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l-~L~~~~~T~VG~~~~~~LSGGQKqRlsI 155 (1245)
. . ... ++..+.+++.+ +|.+..+..++ .||||||||++|
T Consensus 111 ~--~-------~~~--------------------------~~~~~~~~~~~~~l~~~~~~~~~-----~LSGG~~Qrv~i 150 (240)
T d1ji0a_ 111 D--K-------EGI--------------------------KRDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAI 150 (240)
T ss_dssp C--S-------SHH--------------------------HHHHHHHHHHCHHHHTTTTSBSS-----SSCHHHHHHHHH
T ss_pred C--H-------HHH--------------------------HHHHHHHHHHHHCHHHHHHCCHH-----HCCHHHHHHHHH
T ss_conf 8--8-------899--------------------------99999999874176888758543-----389999999999
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCHHHHH
Q ss_conf 9998449707455279868375989999999999766159889999438984689620136883487288866910499
Q 000872 156 GEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 156 AraL~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~~~l~ 234 (1245)
||||+.+|++++|||||+|||+.++.++++.++.+++ .+++++.++|...++..++|+|++|++|++++.|+++++.
T Consensus 151 AraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 9999829987400398867999999999999999996--8998999958899999969999999899999984899984
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.7e-43 Score=284.91 Aligned_cols=191 Identities=22% Similarity=0.295 Sum_probs=159.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC----------------CCCEEEEECCCCCCCCCCCH
Q ss_conf 99983799999589997981998999961259998991489876----------------54228976655465778898
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV----------------PQRTAAYISQHDIHIGEMTV 64 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~----------------~~~~i~yv~Q~d~l~~~lTV 64 (1245)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.+|||+|++.+++.+||
T Consensus 30 i~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv 106 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 106 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHC
T ss_conf 99999899982999999997476678---997799999933677520000235176799974544899833231411010
Q ss_pred HHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC-CCCCCCCCC
Q ss_conf 999999976-228887630234511999851039982257899998831122123699999881973334-443368654
Q 000872 65 RETLAFSAR-CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCA-DTVVGDEML 142 (1245)
Q Consensus 65 rEnL~f~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~-~T~VG~~~~ 142 (1245)
+||+.++.. ..+. ... +..+.++++++.++|.+.. +.. .
T Consensus 107 ~env~~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----p 147 (258)
T d1b0ua_ 107 LENVMEAPIQVLGL----------SKH------------------------DARERALKYLAKVGIDERAQGKY-----P 147 (258)
T ss_dssp HHHHHHHHHHTTCC----------CHH------------------------HHHHHHHHHHHHTTCCHHHHTSC-----G
T ss_pred CHHHHHHHHHHCCC----------CHH------------------------HHHHHHHHHHHHCCCCHHHHCCC-----C
T ss_conf 21365657876299----------989------------------------99999999999829952443068-----2
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCC
Q ss_conf 34661100145899998449707455279868375989999999999766159889999438984689620136883487
Q 000872 143 RGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDG 222 (1245)
Q Consensus 143 ~~LSGGQKqRlsIAraL~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G 222 (1245)
..||||||||++|||||+.+|++++|||||+|||+.++..|++.|+.+++ .+++++.++|...++..++|+|++|.+|
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~--~g~til~vtHdl~~~~~~adri~vm~~G 225 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGFARHVSSHVIFLHQG 225 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--TTCCEEEECSCHHHHHHHCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCCCEEEEECCHHHHHHHCCEEEEEECC
T ss_conf 20567788898999998439987885245556887888899876554103--6883389948999999869999999799
Q ss_pred CEEEECCHHHHHH
Q ss_conf 2888669104999
Q 000872 223 QIVYQGPLEHVEQ 235 (1245)
Q Consensus 223 ~iv~~G~~~~l~~ 235 (1245)
++++.|+++++..
T Consensus 226 ~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 226 KIEEEGDPEQVFG 238 (258)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999849999983
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.1e-42 Score=280.76 Aligned_cols=204 Identities=28% Similarity=0.396 Sum_probs=165.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 9998379999958999798199899996125999899148987654----228976655465778898999999976228
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ----RTAAYISQHDIHIGEMTVRETLAFSARCQG 76 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~~----~~i~yv~Q~d~l~~~lTVrEnL~f~~~l~~ 76 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++....++ +.++|++|++.+++++||+||+.++...++
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~ 108 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG 108 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCC
T ss_conf 99999999984999999997797688---737999999664056999998338725776424788742321430133303
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 88763023451199985103998225789999883112212369999988197333444336865434661100145899
Q 000872 77 VGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTG 156 (1245)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRlsIA 156 (1245)
.... ...... ...++. ++....++.+++.+++.+..|..++ .||||||||++||
T Consensus 109 ~~~~-------~~~~~~-~~~~~~-------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA 162 (254)
T d1g6ha_ 109 ESPL-------NSLFYK-KWIPKE-------------EEMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIG 162 (254)
T ss_dssp SCHH-------HHHHHC-SSCCCC-------------HHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHH
T ss_pred CCCH-------HHHHHH-CCCCCH-------------HHHHHHHHHHHHHCCCCHHCCCCHH-----HCCCHHHHHHHHH
T ss_conf 4504-------566542-135328-------------9999999999876196302059535-----6991888899999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCHHHHHH
Q ss_conf 9984497074552798683759899999999997661598899994389846896201368834872888669104999
Q 000872 157 EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 157 raL~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~~~l~~ 235 (1245)
|||..+|++++|||||+|||+.++.++++.++.++. .+++++.++|...++..++|+|++|++|++++.|+.+++.+
T Consensus 163 raL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 163 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred HHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 999759272324397656999999999999999997--89989999476999998699999996998999966899865
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-42 Score=281.02 Aligned_cols=196 Identities=28% Similarity=0.420 Sum_probs=155.8
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 89999599999457100013534674202224179994884999986999978999999969999980579999979508
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++|+|++|+|+. ..+.+|+|||+.+++||.+||+|+||||||||+++|.|...+ .+|+|.+||.+.
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred CEEEEEEEEEECC-----------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC--CCCEEEECCEEE
T ss_conf 9299999999089-----------996037424899849999999999999899999999735788--888999999994
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCC
Q ss_conf 94---43334189972488789999999999999870299889877899999999998299-------432222236888
Q 000872 755 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-------NPLRQALVGLPG 824 (1245)
Q Consensus 755 ~~---~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~g~~~ 824 (1245)
.. ..+++.++||+|+..++ ..|++|++.+.. .....++ +++..+..++ ....++.++..+
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQG 137 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTT
T ss_pred CCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCC-----CCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf 4002465535288982446557-840003522357-----5543888----99999997557888763201344327878
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 8867978999999999996299765894899999999999999999998738988999915888899998640
Q 000872 825 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 825 ~~~lSgGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
..||||||||++|||+|+.+|+|++|||||++||+.++..+++.|+++. +++|+|+++|+++ ....+|+
T Consensus 138 -~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~ 206 (241)
T d2pmka1 138 -AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADR 206 (241)
T ss_dssp -TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSE
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCE
T ss_conf -8669889898754434441651355647765559899999999999985-8998999978899--9984999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=9.1e-44 Score=289.41 Aligned_cols=181 Identities=23% Similarity=0.363 Sum_probs=79.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 99837999995899979819989999612599989914898765422897665546577889899999997622888763
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRY 81 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~~~~i~yv~Q~d~l~~~lTVrEnL~f~~~l~~~~~~~ 81 (1245)
++|+||||||||||+++|+|.++|+ +|.|.++| .++||+|++++++ .||+|||.|+..... .++
T Consensus 65 vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~eni~~~~~~~~--~~~ 128 (281)
T d1r0wa_ 65 LAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTIKENIIFGVSYDE--YRY 128 (281)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEHHHHHTTTSCCCH--HHH
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCCCCC-CEEECCCCCCCCCCC--HHH
T ss_conf 9999899982999999995797478---82899999----------9999816430267-603214203334560--579
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 02345119998510399822578999988311221236999998819733344433686543466110014589999844
Q 000872 82 DMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVG 161 (1245)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRlsIAraL~~ 161 (1245)
+.+.+.+ +.......+++..+|.+|+.+. +||||||||++|||||+.
T Consensus 129 ~~~~~~~--------------------------------~~~~~i~~l~~~~~~~~~~~~~-~LSgGqkQRv~lARaL~~ 175 (281)
T d1r0wa_ 129 KSVVKAC--------------------------------QLQQDITKFAEQDNTVLGEGGV-TLSGGQRARISLARAVYK 175 (281)
T ss_dssp HHHHHHT--------------------------------TCHHHHTTSTTGGGCEECTTCT-TSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHH--------------------------------HHHHHHHHCHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHH
T ss_conf 9999997--------------------------------7699998461233235555423-779999999999999986
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCHHHHH
Q ss_conf 9707455279868375989999999999766159889999438984689620136883487288866910499
Q 000872 162 PAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 234 (1245)
Q Consensus 162 ~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~~~l~ 234 (1245)
+|+|++||||||+||+.++..+++.+... ...+++++.++|+. +....||+|++|++|+++++|+++++.
T Consensus 176 ~p~illLDEPts~LD~~~~~~i~~~~~~~--~~~~~tvi~itH~~-~~l~~aDrI~vl~~G~i~~~Gt~~eL~ 245 (281)
T d1r0wa_ 176 DADLYLLDSPFGYLDVFTEEQVFESCVCK--LMANKTRILVTSKM-EHLRKADKILILHQGSSYFYGTFSELQ 245 (281)
T ss_dssp CCSEEEEESCCCSSCHHHHHHHHHHCCCC--CTTTSEEEEECSCH-HHHHTCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCCHHHCCCCCCCCHHHHHHHHHHHHHH--HHCCCEEEEEECHH-HHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 96351333855448989999999999988--62899999992528-999859999999899999987899996
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.5e-41 Score=275.40 Aligned_cols=193 Identities=22% Similarity=0.402 Sum_probs=153.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 99983799999589997981998999961259998991489876---542289766554657788989999999762288
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~---~~~~i~yv~Q~d~l~~~lTVrEnL~f~~~l~~~ 77 (1245)
.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+.. .|+.++||+|++.++ +.||+|||.|+.....
T Consensus 46 ~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~~~~~- 120 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGRPTAT- 120 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGCSSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCCCCC-CCCHHHHHHCCCCCCC-
T ss_conf 99998899980999999997127863---000153998753078888634145651015689-9879999851586799-
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 87630234511999851039982257899998831122123699999881973334443368654346611001458999
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRlsIAr 157 (1245)
.+.+ ..++. .....+. ...|+++.+|.+|+.+. .||||||||++|||
T Consensus 121 ---~~~~---------------------~~al~-----~~~l~~~---i~~lp~gl~t~i~~~g~-~LSgGq~QRi~iAR 167 (255)
T d2hyda1 121 ---DEEV---------------------VEAAK-----MANAHDF---IMNLPQGYDTEVGERGV-KLSGGQKQRLSIAR 167 (255)
T ss_dssp ---HHHH---------------------HHHHH-----HTTCHHH---HHTSTTGGGCBCCGGGT-TSCHHHHHHHHHHH
T ss_pred ---HHHH---------------------HHHHH-----HHCCHHH---HHHCCCCCCCHHCCCCC-CCCHHHHHHHHHHH
T ss_conf ---9999---------------------99999-----9697999---97362420103338889-84999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCHHHHHH
Q ss_conf 984497074552798683759899999999997661598899994389846896201368834872888669104999
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 158 aL~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~~~l~~ 235 (1245)
|++.+|+|++||||||+||+.++..|++.|+.+.+ ++ |++.++|... ....||+|++|++|++++.|+++++.+
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~-TvI~itH~~~-~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQEALDVLSK--DR-TTLIVAHRLS-TITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TS-EEEEECSSGG-GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CC-EEEEEECCHH-HHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 98559989998376544797799999999998753--88-8999968999-998599999998999999889999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.2e-42 Score=280.66 Aligned_cols=194 Identities=22% Similarity=0.335 Sum_probs=152.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 99983799999589997981998999961259998991489876---542289766554657788989999999762288
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~---~~~~i~yv~Q~d~l~~~lTVrEnL~f~~~l~~~ 77 (1245)
.++|+||||||||||+++|+|.++|+ +|+|.+||.+++... .++.++||+|++.+++. ||+||+.++.....
T Consensus 30 ~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~- 104 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDY- 104 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTSCS-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCCCCC-
T ss_conf 99999999997999999999960989---87798899884424678887436797566545785-34543012445554-
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 87630234511999851039982257899998831122123699999881973334443368654346611001458999
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRlsIAr 157 (1245)
.+. ..... .. .+........+++..+|.+|+.+. .||||||||++|||
T Consensus 105 ---~~~-----~~~~~---------------~~--------~~~~~~~~~~~~~~~~~~i~~~g~-~LSGGqkQRv~iAR 152 (242)
T d1mv5a_ 105 ---TDE-----DLWQV---------------LD--------LAFARSFVENMPDQLNTEVGERGV-KISGGQRQRLAIAR 152 (242)
T ss_dssp ---CHH-----HHHHH---------------HH--------HHTCTTTTTSSTTGGGCEESTTSB-CCCHHHHHHHHHHH
T ss_pred ---CHH-----HHHHH---------------HH--------HHHHHHHHCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHH
T ss_conf ---235-----67789---------------99--------997555420374210152368789-87999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCHHHHHH
Q ss_conf 984497074552798683759899999999997661598899994389846896201368834872888669104999
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 158 aL~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~~~l~~ 235 (1245)
|++.+|+|++||||||+||+.++..|++.|+.+.+ ++|++.++|....+ ..||+|++|++|+++++|+++++.+
T Consensus 153 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~---~~Tvi~itH~l~~~-~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 153 AFLRNPKILMLDEATASLDSESESMVQKALDSLMK---GRTTLVIAHRLSTI-VDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp HHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT---TSEEEEECCSHHHH-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC---CCEEEEEECCHHHH-HHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 98529989996588655698899999887888717---99899997879999-8499999998999999999999986
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.7e-41 Score=275.07 Aligned_cols=178 Identities=24% Similarity=0.367 Sum_probs=156.9
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCC-CCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 417999488499998699997899999996999998057999997950894-4333418997248878999999999999
Q 000872 706 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-ETFTRISGYCEQNDIHSPYVTVYESLLY 784 (1245)
Q Consensus 706 ~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~yv~q~d~~~~~ltv~e~l~~ 784 (1245)
|+|+.++ +|.++|+||||||||||+++|+|..++ .+|+|.+||.+... ...++.+|||+|+..++|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCC--CCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-979999979998099999999739998--9628999999988699899285225231443522015576665
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 98702998898778999999999982994322222368888867978999999999996299765894899999999999
Q 000872 785 SAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 864 (1245)
Q Consensus 785 ~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~ 864 (1245)
.. + .....+++++++++++.+||.+..+..+ +.||||||||++|||+|+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32--3---3677889999999998638375665794-----448999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHH
Q ss_conf 999999998738-988999915888899998640
Q 000872 865 VVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 865 ~i~~~l~~~~~~-~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
.+++.++++.++ |.|||+++|++. ++.+.-|+
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adr 196 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADE 196 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 9999999998743976999818999-99996999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.8e-41 Score=271.73 Aligned_cols=194 Identities=25% Similarity=0.409 Sum_probs=152.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989999612599989914898765---42289766554657788989999999762288
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~---~~~i~yv~Q~d~l~~~lTVrEnL~f~~~l~~~ 77 (1245)
.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+... ++.++||+|++.++ +.|+++|+.++..-..
T Consensus 43 ~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~~~~~- 117 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLF-NDTVANNIAYARTEEY- 117 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTTTSCC-
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECCCCC-CCCHHHHHHHCCCCCC-
T ss_conf 99999999985999999986216888---468987880121110665420687995025447-8620243320572208-
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 87630234511999851039982257899998831122123699999881973334443368654346611001458999
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRlsIAr 157 (1245)
..+ ..+.+ .. .....|.+. .|+++.+|.+|+.+. .||||||||++|||
T Consensus 118 --~~~------~i~~a---------------~~-----~~~l~~~i~---~l~~gl~t~~~~~~~-~LSGGqkQRvaiAR 165 (253)
T d3b60a1 118 --SRE------QIEEA---------------AR-----MAYAMDFIN---KMDNGLDTIIGENGV-LLSGGQRQRIAIAR 165 (253)
T ss_dssp --CHH------HHHHH---------------HH-----TTTCHHHHH---HSTTGGGSBCCTTSC-SSCHHHHHHHHHHH
T ss_pred --CHH------HHHHH---------------HH-----HHHHHHHHH---HCCCCCHHHHCCCCC-CCCHHHHHHHHHHH
T ss_conf --999------99999---------------99-----981799997---355441014348889-84999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCHHHHHH
Q ss_conf 984497074552798683759899999999997661598899994389846896201368834872888669104999
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 158 aL~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~~~l~~ 235 (1245)
||+.+|+|++||||||+||+.++..|++.|+.+.+ ++|++.++|.... ...||+|++|++|+++++|+++++.+
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~---~~Tvi~itH~l~~-~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQK---NRTSLVIAHRLST-IEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT---TSEEEEECSCGGG-TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC---CCEEEEEECCHHH-HHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99549988995164445898899999999987522---7889999887999-98599999998999999889999986
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-41 Score=273.99 Aligned_cols=196 Identities=21% Similarity=0.350 Sum_probs=154.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989999612599989914898765---42289766554657788989999999762288
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~---~~~i~yv~Q~d~l~~~lTVrEnL~f~~~l~~~ 77 (1245)
.++|+||||||||||+++|+|.++|+ +|+|.+||.++..... ++.++||+|++.+++ .||+||+.|+...+.
T Consensus 42 ~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~~- 116 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKP- 116 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCC-
T ss_conf 99999999984999999986143787---6899889985311013788877654045650027-634655454210130-
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 87630234511999851039982257899998831122123699999881973334443368654346611001458999
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRlsIAr 157 (1245)
..+.... +... ........+|++..+|.+++.+. .||||||||++|||
T Consensus 117 --~~~~~~~---------------------~~~~--------~~~~~~i~~l~~g~~~~i~~~~~-~LSGGqkQRvaiAR 164 (251)
T d1jj7a_ 117 --TMEEITA---------------------AAVK--------SGAHSFISGLPQGYDTEVDEAGS-QLSGGQRQAVALAR 164 (251)
T ss_dssp --CHHHHHH---------------------HHHH--------HTCHHHHHTSTTGGGCBCCSSCS-SSCHHHHHHHHHHH
T ss_pred --HHHHHHH---------------------HHHH--------HHHHHHHHHCCCCCHHHHHCCCC-CCCHHHCEEEEEEE
T ss_conf --2788999---------------------9999--------98999998561211136751676-68954704899860
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCHHHHHH
Q ss_conf 984497074552798683759899999999997661598899994389846896201368834872888669104999
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235 (1245)
Q Consensus 158 aL~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~~~l~~ 235 (1245)
|++.+|+|++||||||+||+.++..|++.|+.+.+.. ++|++.++|... ....||+|++|++|+++++|+++++.+
T Consensus 165 al~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~-~~Tvi~itH~l~-~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 165 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERY-SRSVLLITQHLS-LVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGG-GCEEEEECSCHH-HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCHH-HHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 4456870787167576568536899999999976506-989999959799-998599999998999999889999985
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.4e-38 Score=253.52 Aligned_cols=183 Identities=21% Similarity=0.308 Sum_probs=151.0
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 89999599999457100013534674202224179994884999986999978999999969999980579999979508
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++.+|+++.++ +++|+|+|+.+++||+++|+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p--~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred EEEEEEEEEEEC--------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEH
T ss_conf 599998999939--------------9288420889859989999999997199999999662056--778899998962
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 94433341899724887899999999999998702998898778999999999982994322222368888867978999
Q 000872 755 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834 (1245)
Q Consensus 755 ~~~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 834 (1245)
.. .+..++|+||+..+...+|++|++.+.+.++... ... ..+.+.++.+++.+..+ .+ ..|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~-~~-----~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNK----NEIMDALESVEVLDLKK-KL-----GELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCTTS-BG-----GGSCHHHHH
T ss_pred HH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-CCH----HHHHHHHHHCCCCCCCC-CC-----CCCCCCHHH
T ss_conf 67--3670899950135788828999999999754886-379----99999998748856301-26-----868971888
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 9999999962997658948999999999999999999987389889999158
Q 000872 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQ 886 (1245)
Q Consensus 835 r~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~ 886 (1245)
|++||++|+.+|++++|||||+|||..++..+++.++++.+++.++++++|+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~ 184 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 184 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 8999998864998999868620169999999999999998679999999916
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-38 Score=254.47 Aligned_cols=179 Identities=22% Similarity=0.353 Sum_probs=149.3
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCC---CCCCCEEEEECCCCCCCCCCCH
Q ss_conf 0222417999488499998699997899999996999998057999997950894---4333418997248878999999
Q 000872 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVTV 778 (1245)
Q Consensus 702 ~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~q~d~~~~~ltv 778 (1245)
..|++||+.|++||++||+||||||||||+++|+|..+ .+|+|.++|.+... ...+...+|++|........++
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCH
T ss_conf 15558888994898999998999809999999948879---955999999999869989998640245121357744209
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEEE
Q ss_conf 999999987029988987789999999999829943222223688888679789999999999962-------9976589
Q 000872 779 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFM 851 (1245)
Q Consensus 779 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~-------~p~il~l 851 (1245)
.+.+.+... .+.+.+.++++++.+++.+..+..+ +.+|||||||++||++|+. +|++++|
T Consensus 90 ~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llll 156 (231)
T d1l7vc_ 90 WHYLTLHQH--------DKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 156 (231)
T ss_dssp HHHHHHHCS--------CTTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHCCC--------HHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 887641001--------4668999999998659876767684-----456998899999999998517133899889997
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 4899999999999999999998738988999915888899998640
Q 000872 852 DEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 852 DEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
||||+|||+.++..+.+.+++++++|+|||+++|+.. ++.+.-|+
T Consensus 157 DEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dr 201 (231)
T d1l7vc_ 157 DEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHR 201 (231)
T ss_dssp SSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSB
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 1877778989999999999999867999999967799-99997999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.2e-38 Score=252.19 Aligned_cols=172 Identities=22% Similarity=0.339 Sum_probs=135.5
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 42022241799948849999869999789999999699999805799999795089443334189972488789999999
Q 000872 700 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVY 779 (1245)
Q Consensus 700 ~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~d~~~~~ltv~ 779 (1245)
.+++|+|+|+.|++||++||+||||||||||+++|+|...+ .+|.|.++|. ++|++|+..+++ .|++
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSGR----------VSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEECCSC----------EEEECSSCCCCS-EEHH
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCE----------EEEEECCCCCCC-CEEE
T ss_conf 97677375999859999999989998299999999579747--8828999999----------999816430267-6032
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHH-------HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99999987029988987789999999999-------82994322222368888867978999999999996299765894
Q 000872 780 ESLLYSAWLRLSSEVNSKTREMFVEEVME-------LVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 852 (1245)
Q Consensus 780 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~-------~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lD 852 (1245)
|++.|.. ...... .+++++ ...+.+..++.++..+ ..||||||||++|||+|+.+|+|++||
T Consensus 115 eni~~~~------~~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~LSgGqkQRv~lARaL~~~p~illLD 183 (281)
T d1r0wa_ 115 ENIIFGV------SYDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYLLD 183 (281)
T ss_dssp HHHTTTS------CCCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTTC-TTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred CCCCCCC------CCCCHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf 1420333------456057----99999997769999846123323555542-377999999999999998696351333
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 899999999999999999998738988999915888899998640
Q 000872 853 EPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 853 EptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
|||++||+.+...+++.+......++|+|+++|++ +.....|+
T Consensus 184 EPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDr 226 (281)
T d1r0wa_ 184 SPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADK 226 (281)
T ss_dssp SCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCE
T ss_conf 85544898999999999998862899999992528--99985999
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.9e-37 Score=245.99 Aligned_cols=184 Identities=22% Similarity=0.330 Sum_probs=153.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989999612599989914898765---42289766554657788989999999762288
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGV 77 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~---~~~i~yv~Q~d~l~~~lTVrEnL~f~~~l~~~ 77 (1245)
+++|+||||||||||+++|+|.. |+ +|+|.++|.++..... +...+|.+|+.......++.+++.++..-+
T Consensus 27 i~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 100 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK-- 100 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCT--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CC---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCHH--
T ss_conf 99999899980999999994887-99---5599999999986998999864024512135774420988764100146--
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 87630234511999851039982257899998831122123699999881973334443368654346611001458999
Q 000872 78 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRlsIAr 157 (1245)
..++.++.+++.++|.+..+..++ .||||||||++|||
T Consensus 101 -------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~ 138 (231)
T d1l7vc_ 101 -------------------------------------TRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAA 138 (231)
T ss_dssp -------------------------------------TCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHH
T ss_conf -------------------------------------689999999986598767676844-----56998899999999
Q ss_pred HHHC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCH
Q ss_conf 9844-------970745527986837598999999999976615988999943898468962013688348728886691
Q 000872 158 MLVG-------PAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 230 (1245)
Q Consensus 158 aL~~-------~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~~ 230 (1245)
+++. +|++++|||||+|||+.++..+++.++.++. .+++++.++|...++...+|++++|++|++++.|+.
T Consensus 139 al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~--~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~ 216 (231)
T d1l7vc_ 139 VVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 216 (231)
T ss_dssp HHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH--TTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBH
T ss_pred HHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 998517133899889997187777898999999999999986--799999996779999997999999979989998899
Q ss_pred HHHH
Q ss_conf 0499
Q 000872 231 EHVE 234 (1245)
Q Consensus 231 ~~l~ 234 (1245)
+++.
T Consensus 217 ~ev~ 220 (231)
T d1l7vc_ 217 EEVL 220 (231)
T ss_dssp HHHS
T ss_pred HHHH
T ss_conf 9981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.8e-34 Score=230.78 Aligned_cols=169 Identities=20% Similarity=0.256 Sum_probs=133.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99983799999589997981998999961259998991489876542289766554657788989999999762288876
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSR 80 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~~~~i~yv~Q~d~l~~~lTVrEnL~f~~~l~~~~~~ 80 (1245)
+++|+||||||||||+++|+|.++|+ +|+|.+||.++.. .+..++|+||+..+...+|++|++.+.+.+.+....
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~ 103 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN 103 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 99999999971999999996620567---7889999896267--367089995013578882899999999975488637
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 30234511999851039982257899998831122123699999881973334443368654346611001458999984
Q 000872 81 YDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV 160 (1245)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRlsIAraL~ 160 (1245)
. ..+...++.+++.+. +..+ ..||||||||++||||++
T Consensus 104 --------~----------------------------~~~~~~l~~~~~~~~-~~~~-----~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 104 --------K----------------------------NEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLASTLL 141 (200)
T ss_dssp --------H----------------------------HHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHHHTT
T ss_pred --------H----------------------------HHHHHHHHHCCCCCC-CCCC-----CCCCCCHHHHHHHHHHHH
T ss_conf --------9----------------------------999999987488563-0126-----868971888899999886
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECC
Q ss_conf 4970745527986837598999999999976615988999943898468962013688348
Q 000872 161 GPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSD 221 (1245)
Q Consensus 161 ~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~ 221 (1245)
.+|++++|||||+|||+.++..+++.++...+. +++++++.||.. ..||.+.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECHH----HHCCHHHHEEE
T ss_conf 499899986862016999999999999999867-999999991625----44161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.46 E-value=1.2e-15 Score=111.95 Aligned_cols=158 Identities=14% Similarity=0.072 Sum_probs=91.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCE--EEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 99837999995899979819989999612599989914898765422--8976655465778898999999976228887
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRT--AAYISQHDIHIGEMTVRETLAFSARCQGVGS 79 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~~~~--i~yv~Q~d~l~~~lTVrEnL~f~~~l~~~~~ 79 (1245)
.+|+||||||||||++.|+|.+++. .|.+...+.+......+.. +.+...........+..+...+ .
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 71 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLV--------G 71 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEE--------T
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCC---CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
T ss_conf 9999899938999999998148888---6469987713288887653112336677788754113455443--------0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 63023451199985103998225789999883112212369999988197333444336865434661100145899998
Q 000872 80 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEML 159 (1245)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKqRlsIAraL 159 (1245)
++ .+. .....+++|+++|.++++++
T Consensus 72 ~~------------------------------------------------------~~~-~~~~~~~~~~~~~~~l~~~~ 96 (178)
T d1ye8a1 72 SY------------------------------------------------------GVN-VQYFEELAIPILERAYREAK 96 (178)
T ss_dssp TE------------------------------------------------------EEC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HH------------------------------------------------------HCC-CCHHHHHHHHHHHHHHHHHH
T ss_conf 23------------------------------------------------------037-62566532013789999997
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECC
Q ss_conf 4497074552798683759899999999997661598899994389846896201368834872888669
Q 000872 160 VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 229 (1245)
Q Consensus 160 ~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv~~G~ 229 (1245)
..+|+++++|||....+. ....++.+...-.. .+++++.++|.. +...++|++..+.+|+++.-++
T Consensus 97 ~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~-~~~~il~~~h~~-~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 97 KDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHD-PNVNVVATIPIR-DVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTC-TTSEEEEECCSS-CCSHHHHHHHTCTTCEEEECCT
T ss_pred HCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCC-CCCEEEEEECCH-HHHHHHCEEEEEECCEEEEECC
T ss_conf 409974230277731004--57999999987505-797899997447-7898636599871999999899
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.31 E-value=1e-12 Score=93.42 Aligned_cols=139 Identities=14% Similarity=0.017 Sum_probs=81.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99998699997899999996999998057999997950894433341899724887899999999999998702998898
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVN 795 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~ 795 (1245)
+++|.||||||||||+++++|.... ..|.+...+.+......+ .++..............+. ........
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~--~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKKR--TGFRIITTEGKKKIFSSKF------FTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC------C--CEEEEEETTCCEEEEEETT------CCCSSEET
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCC--CCCEEEECCCCHHHHHHH--HHHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_conf 8999989993899999999814888--864699877132888876--5311233667778875411------34554430
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 77899999999998299432222236888886797899999999999629976589489999999999999999999873
Q 000872 796 SKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD 875 (1245)
Q Consensus 796 ~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~ 875 (1245)
. . .. +......++|++++.++++++..+|+++++|||+...+ ........+.+..+
T Consensus 72 ~-------------~---~~------~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~ 127 (178)
T d1ye8a1 72 S-------------Y---GV------NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMH 127 (178)
T ss_dssp T-------------E---EE------CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHT
T ss_pred H-------------H---HC------CCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHC
T ss_conf 2-------------3---03------76256653201378999999740997423027773100--45799999998750
Q ss_pred -CCCEEEEEECCCC
Q ss_conf -8988999915888
Q 000872 876 -TGRTVVCTIHQPS 888 (1245)
Q Consensus 876 -~~~tvi~~~h~p~ 888 (1245)
.+.+++.++|+..
T Consensus 128 ~~~~~il~~~h~~~ 141 (178)
T d1ye8a1 128 DPNVNVVATIPIRD 141 (178)
T ss_dssp CTTSEEEEECCSSC
T ss_pred CCCCEEEEEECCHH
T ss_conf 57978999974477
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=1.7e-09 Score=73.08 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 86797899999999999----6299765894899999999999999999998738988999915888899998640
Q 000872 826 NGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 826 ~~lSgGerkr~~ia~~l----~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
..+|+|||+...++..+ ..++++++.|||-++|++.....+.+.|+..++ +.-||+|+|.|. +.+.+|+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~ 290 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADL 290 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCC
T ss_conf 102577766777776655654226744554320335797899999999998554-887999989889--9973242
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.91 E-value=2.6e-08 Score=65.72 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=59.4
Q ss_pred CCCCCCCCCHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEE
Q ss_conf 434661100145899998----4497074552798683759899999999997661598899994389846896201368
Q 000872 142 LRGISGGQRKRVTTGEML----VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDII 217 (1245)
Q Consensus 142 ~~~LSGGQKqRlsIAraL----~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~ 217 (1245)
...+|+|||+...++..+ ..+++++++|||-++|+|.....+.+.|+..+. +.-++ +++|+++++..+|++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~Qvi--itTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFI--VITHNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEE--EECCCTTGGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEE--EEECCHHHHHHCCCEE
T ss_conf 1102577766777776655654226744554320335797899999999998554--88799--9989889997324289
Q ss_pred E--ECCCC
Q ss_conf 8--34872
Q 000872 218 L--VSDGQ 223 (1245)
Q Consensus 218 v--L~~G~ 223 (1245)
. +.+|.
T Consensus 293 ~v~~~~g~ 300 (308)
T d1e69a_ 293 GVTMVNGV 300 (308)
T ss_dssp EEEESSSC
T ss_pred EEEEECCE
T ss_conf 99996999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.75 E-value=1.5e-08 Score=67.19 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 86797899999999999----6299765894899999999999999999998738988999915888899998640
Q 000872 826 NGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 826 ~~lSgGerkr~~ia~~l----~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
..+|||||.++++|.-+ ..+++++++|||+++||+.....+.+.|++++..+.-+|+++|+| ++.+..|.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~ 404 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDA 404 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCC
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878--99973661
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=6.9e-08 Score=63.00 Aligned_cols=75 Identities=16% Similarity=0.327 Sum_probs=56.2
Q ss_pred CCCCCCCCCHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEE
Q ss_conf 434661100145899998----4497074552798683759899999999997661598899994389846896201368
Q 000872 142 LRGISGGQRKRVTTGEML----VGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDII 217 (1245)
Q Consensus 142 ~~~LSGGQKqRlsIAraL----~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~ 217 (1245)
...+|||||.++++|..+ +.++++++||||+++||+..+..+.+.|...+. ..+=++ +++|.+.+.+.+|+++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I-~iTH~~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFI-VISLKNTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEE-EECSCHHHHTTCSEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEE-EEECCHHHHHHCCCEE
T ss_conf 3332230479999999999954799977999688777899999999999999728--998899-9958789997366179
Q ss_pred EE
Q ss_conf 83
Q 000872 218 LV 219 (1245)
Q Consensus 218 vL 219 (1245)
..
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.71 E-value=0.00013 Score=42.34 Aligned_cols=57 Identities=11% Similarity=0.187 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHHCCCEEEEEECCC
Q ss_conf 8999999999996299765894899999999999999999-99873898899991588
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV-RNTVDTGRTVVCTIHQP 887 (1245)
Q Consensus 831 Gerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l-~~~~~~~~tvi~~~h~p 887 (1245)
.|-++++-......+.+++++||..+|-|+.....+...+ ..+.+.+..+++++|..
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~ 157 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF 157 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH
T ss_conf 8678898775028977278554545686233200258888888862376137865202
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.68 E-value=0.00021 Score=41.00 Aligned_cols=158 Identities=15% Similarity=0.097 Sum_probs=74.4
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC--CCCEEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 222417999488499998699997899999996999--998057999997950894433341899724887899999999
Q 000872 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK--TRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 780 (1245)
Q Consensus 703 ~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~--~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~d~~~~~ltv~e 780 (1245)
-|+++.+-++||+++.|.|++|+||||++.-++-.. ..+ ..+.|+.- .++..+
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g-------------------~~v~~~s~------E~~~~~ 78 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-------------------KKVGLAML------EESVEE 78 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC-------------------CCEEEEES------SSCHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCEEEEEE------CCCHHH
T ss_conf 68887469789808999947999799999999972655336-------------------63457640------111135
Q ss_pred HH-HHHHH-HCCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 99-99987-0299889877899-----99999999829943222223688888679789999999999962997658948
Q 000872 781 SL-LYSAW-LRLSSEVNSKTRE-----MFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 853 (1245)
Q Consensus 781 ~l-~~~~~-l~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDE 853 (1245)
.. ++.+. ...+.......+. ...++..+.+.-........ .....+..+.....-...--.+|+++++|-
T Consensus 79 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vvID~ 155 (277)
T d1cr2a_ 79 TAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYD---SFAEAETDRLLAKLAYMRSGLGCDVIILDH 155 (277)
T ss_dssp HHHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEEC---CC-CCCHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC---CCCCHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 77699998645871010122222145677888988740352146621---433106899999865432136762599705
Q ss_pred CC-----CCC--CHHHHHHHHHHHHHHHHC-CCEEEEEECCCC
Q ss_conf 99-----999--999999999999998738-988999915888
Q 000872 854 PT-----SGL--DARAAAVVMRTVRNTVDT-GRTVVCTIHQPS 888 (1245)
Q Consensus 854 pt-----sgl--D~~~~~~i~~~l~~~~~~-~~tvi~~~h~p~ 888 (1245)
.+ .+- +......+++.+++++++ +++|++++|-.+
T Consensus 156 l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r 198 (277)
T d1cr2a_ 156 ISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKN 198 (277)
T ss_dssp EEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 4212034654430677899999999976501655203103563
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.63 E-value=0.0003 Score=40.05 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=27.9
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 497074552798683759899999999-9976615988999943898468962
Q 000872 161 GPAHALFMDEISTGLDSSTTFHIVNSL-GQFNHILNGTALISLLQPAPEVYNL 212 (1245)
Q Consensus 161 ~~~~IllLDEpTSgLD~~s~~~I~~~L-~~~~~~~~~t~iv~i~q~~~ei~~l 212 (1245)
+..+++++||..+|=|+.....+...+ ..+.. .+..+++++|+ .++..+
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~--~eL~~l 162 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHY--FELTAL 162 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCC--HHHHTC
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH-CCCCEEEEEEC--HHHHHH
T ss_conf 977278554545686233200258888888862-37613786520--233322
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=0.00039 Score=39.30 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHC-CCEEEEEECCCC
Q ss_conf 899999999999629976589489999999999999999-9998738-988999915888
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT-VRNTVDT-GRTVVCTIHQPS 888 (1245)
Q Consensus 831 Gerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~-l~~~~~~-~~tvi~~~h~p~ 888 (1245)
.|-+|++-......+.+++++||+.+|-++.....+... +..+..+ +..+++++|...
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 999999999974546608853222358774566678987645432045442898524687
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=0.00038 Score=39.40 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=25.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEECC
Q ss_conf 49707455279868375989999999-999766159889999438
Q 000872 161 GPAHALFMDEISTGLDSSTTFHIVNS-LGQFNHILNGTALISLLQ 204 (1245)
Q Consensus 161 ~~~~IllLDEpTSgLD~~s~~~I~~~-L~~~~~~~~~t~iv~i~q 204 (1245)
...+++++||+.+|=++.....+... +..+....+..+++++|+
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~ 163 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHY 163 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf 466088532223587745666789876454320454428985246
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.0029 Score=33.79 Aligned_cols=153 Identities=17% Similarity=0.142 Sum_probs=73.9
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 22241799948849999869999789999999699999805799999795089443334189972488789999999999
Q 000872 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESL 782 (1245)
Q Consensus 703 ~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~d~~~~~ltv~e~l 782 (1245)
++.+ +.||+++.|.|++|+|||||+.-|+.....+ .-...+... -...+-|+.-++ +..+..
T Consensus 22 li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g----~~~~~~~~~----~~~~vl~~~~E~------~~~~~~ 83 (274)
T d1nlfa_ 22 VLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIAGG----PDLLEVGEL----PTGPVIYLPAED------PPTAIH 83 (274)
T ss_dssp EETT----EETTSEEEEEESTTSSHHHHHHHHHHHHHTC----CCTTCCCCC----CCCCEEEEESSS------CHHHHH
T ss_pred HHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHHCC----CCCCCCCCC----CCCCEEEEECCC------HHHHHH
T ss_conf 8689----5589589999289998999999999999769----972111235----787368985123------499999
Q ss_pred -HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC-----
Q ss_conf -99987029988987789999999999829943222223688888679789999999999962997658948999-----
Q 000872 783 -LYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS----- 856 (1245)
Q Consensus 783 -~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEpts----- 856 (1245)
++.+... ....... ......+.+....+.. ........+.-......+++++++|.-+.
T Consensus 84 ~Rl~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~ 148 (274)
T d1nlfa_ 84 HRLHALGA---HLSAEER----QAVADGLLIQPLIGSL--------PNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEE 148 (274)
T ss_dssp HHHHHHHT---TSCHHHH----HHHHHHEEECCCTTSC--------CCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSC
T ss_pred HHHHHHHH---CCCHHHH----HCCCCCCEECCCCCCC--------CHHHHHHHHHHHHHHCCCCCEEECCCHHHHCCCC
T ss_conf 99999862---3686665----3123332321456742--------0357899999988752676589628135422665
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCC
Q ss_conf 99999999999999998738-988999915888
Q 000872 857 GLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPS 888 (1245)
Q Consensus 857 glD~~~~~~i~~~l~~~~~~-~~tvi~~~h~p~ 888 (1245)
--|......+++.|+.+++. +++++++.|...
T Consensus 149 ~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K 181 (274)
T d1nlfa_ 149 ENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 181 (274)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCCC
T ss_conf 232256899998877776447975401310055
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.28 E-value=0.00016 Score=41.83 Aligned_cols=34 Identities=18% Similarity=0.471 Sum_probs=26.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 884999986999978999999969999980579999
Q 000872 713 PGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNIT 748 (1245)
Q Consensus 713 ~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~ 748 (1245)
+|...+++|+||.|||||+|.|.+.... -+|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~--~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKL--RVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC--C-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHH--HCCCCC
T ss_conf 6980899788987788887730535550--106842
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.10 E-value=0.00022 Score=40.92 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=22.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 998379999958999798199899996125999
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVT 34 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~ 34 (1245)
++++|+||.|||||+|.|.|...-. .|.|.
T Consensus 98 ~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 98 STMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp EEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred EEEECCCCCCHHHHHHHHCCHHHHH---CCCCC
T ss_conf 8997889877888877305355501---06842
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=97.00 E-value=0.0065 Score=31.63 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=36.8
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHHH
Q ss_conf 999996299765894899999999999999999998738988999915888-89999864
Q 000872 838 IAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS-IDIFEAFD 896 (1245)
Q Consensus 838 ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~-~~i~~~fd 896 (1245)
+..+|=.+|.+++..|.. |..++...+ +.+..|..|+.|+|..+ ..+++.+-
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~a~~~~~Rl~ 272 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNTAVGAVTRLR 272 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSSSHHHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCCHHHHHHHHH
T ss_conf 999984138889845768---759999999----99724985899833676676654321
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.98 E-value=0.0068 Score=31.50 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=26.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 799948849999869999789999999699999
Q 000872 708 SGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR 740 (1245)
Q Consensus 708 s~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~ 740 (1245)
...++.+.-+.|.|++||||||++++|.+..+.
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~ 192 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK 192 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 999983788899940356625789998653014
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.00013 Score=42.41 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=19.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
+++|+|++|||||||++.|+.++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.87 E-value=7e-05 Score=44.03 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=26.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 884999986999978999999969999980579999
Q 000872 713 PGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNIT 748 (1245)
Q Consensus 713 ~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~ 748 (1245)
+|....++|+||.|||||+|.|.+.... .+|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~--~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGL--RTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHH--HHCCCC
T ss_conf 3564999877873487898751517676--403555
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.74 E-value=0.00051 Score=38.60 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|+|||||||||+++.|..+.+
T Consensus 5 ivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999999999999984589
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.68 E-value=0.00074 Score=37.56 Aligned_cols=25 Identities=40% Similarity=0.567 Sum_probs=14.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8849999869999789999999699
Q 000872 713 PGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 713 ~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.|+++.|.|++||||||+.+.|+.+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9859999889999889999999999
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.67 E-value=0.00039 Score=39.30 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=20.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
+++|+||+|||||||++.|+....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.63 E-value=0.00046 Score=38.85 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.63 E-value=0.00076 Score=37.50 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=32.0
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEECCCC-HHHHHHHH
Q ss_conf 99999629976589489999999999999999999873898-8999915888-89999864
Q 000872 838 IAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGR-TVVCTIHQPS-IDIFEAFD 896 (1245)
Q Consensus 838 ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~-tvi~~~h~p~-~~i~~~fd 896 (1245)
+-.+|=.+|..++++|--.+ ++. .+ ++.+ ..|. -++.|+|..+ .+.++.+-
T Consensus 228 l~~~lR~~pd~iivgEiR~~---ea~-~~---l~a~-~tGh~g~~tT~Ha~s~~~a~~Rl~ 280 (323)
T d1g6oa_ 228 LKSCLRMRPDRIILGELRSS---EAY-DF---YNVL-CSGHKGTLTTLHAGSSEEAFIRLA 280 (323)
T ss_dssp HHHHTTSCCSEEEESCCCST---HHH-HH---HHHH-HTTCSCEEEEECCSSHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCH---HHH-HH---HHHH-HHCCCCEEEEECCCCHHHHHHHHH
T ss_conf 99974349985457866746---599-99---9999-816985799878799999999999
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.62 E-value=0.00084 Score=37.24 Aligned_cols=24 Identities=50% Similarity=0.653 Sum_probs=21.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
+.+|.||+||||||+.+.|+.++.
T Consensus 6 iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999988999988999999999959
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.00074 Score=37.59 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++|.|++|||||||++.|...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.52 E-value=0.00038 Score=39.39 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 84999986999978999999969999
Q 000872 714 GVLTALMGVTGSGKTTLMDVLAGRKT 739 (1245)
Q Consensus 714 G~~~ai~G~sGsGKsTLl~~L~g~~~ 739 (1245)
|.++.|+||||||||||.+.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.49 E-value=0.00086 Score=37.16 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+|++|+|||||++.|+|+-
T Consensus 26 I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCCCHHHHHHHHCCCC
T ss_conf 9998999987999999852987
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.46 E-value=0.00027 Score=40.34 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=11.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
++++|+||.|||||+|.|.|..
T Consensus 100 ~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 100 TVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp EEEEESHHHHHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHCCHH
T ss_conf 9998778734878987515176
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=8e-05 Score=43.68 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=17.9
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 22417999488499998699997899999996
Q 000872 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 735 (1245)
Q Consensus 704 L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~ 735 (1245)
.++.++.+.+| ++.|+|+|||||||+|++|.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 70279974998-08998899998799999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.0011 Score=36.48 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=12.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 84999986999978999999969
Q 000872 714 GVLTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 714 G~~~ai~G~sGsGKsTLl~~L~g 736 (1245)
|.++.|+||||+||+||.+.|..
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~ 24 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLK 24 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 80999999999999999999986
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.42 E-value=0.00042 Score=39.11 Aligned_cols=36 Identities=31% Similarity=0.222 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 998379999958999798199899996125999899
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNG 37 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG 37 (1245)
..|+|++|||||||+.-|+.++...+..-|.|..++
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 999809999899999999999986798379998316
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.36 E-value=0.00076 Score=37.50 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=14.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.+.+.||+|+|||||.+.|++..
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99988979988999999999986
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.0015 Score=35.70 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=16.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48849999869999789999999699
Q 000872 712 RPGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 712 ~~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+.+.++.|+|++||||||+.+.|+.+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98718999899998989999999998
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.28 E-value=0.0011 Score=36.46 Aligned_cols=22 Identities=59% Similarity=0.714 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+||+||||||+.+.|+-++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9898999999899999999997
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.28 E-value=0.00097 Score=36.84 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=20.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
+.+|+|++||||||+.+.|+.++.
T Consensus 8 iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899989999898999999999869
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.25 E-value=0.00067 Score=37.83 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|.||+||||||+.+.|+..+
T Consensus 5 I~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999980
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.23 E-value=0.0017 Score=35.24 Aligned_cols=25 Identities=28% Similarity=0.635 Sum_probs=13.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8849999869999789999999699
Q 000872 713 PGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 713 ~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+|-.+.|.|++||||||+.+.|+.+
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9888999828999889999999998
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.23 E-value=0.0017 Score=35.26 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488499998699997899999996999
Q 000872 712 RPGVLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 712 ~~G~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+.|.++.|.|++||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.22 E-value=0.0014 Score=35.86 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.+||+|.+|+|||||++.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.18 E-value=0.0012 Score=36.29 Aligned_cols=19 Identities=42% Similarity=0.635 Sum_probs=9.5
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9983799999589997981
Q 000872 2 TLLLGPPGSGKTTLMLALA 20 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~ 20 (1245)
.++.|++||||||+.+.|.
T Consensus 5 Iii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998999999999999999
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.18 E-value=0.001 Score=36.70 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=11.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999995899979819
Q 000872 2 TLLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G 21 (1245)
.+|+||+||||||+.+.|+-
T Consensus 9 I~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 9 VFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989999988999999999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.16 E-value=0.0014 Score=35.90 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.++|+|++|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.0012 Score=36.14 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=20.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
|.+|+||||+||+||++.|.-+.+
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999999999999999999986398
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.16 E-value=0.0011 Score=36.58 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|.||+|||||||.+.|+-.+
T Consensus 10 I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 10 VAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998999999999984
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.12 E-value=0.0016 Score=35.53 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999978999999969
Q 000872 716 LTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g 736 (1245)
+++|.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.10 E-value=0.0014 Score=35.83 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|++|+|||||++.|.|+.
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999988999999996898
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.10 E-value=0.002 Score=34.81 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=25.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC-CCEEEEEEEECC
Q ss_conf 4999986999978999999969999-980579999979
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGRKT-RGYITGNITISG 751 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~~~-~~~~~G~i~~~g 751 (1245)
..++|+|++|||||||+..|..+.. .|..-|.|.-++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 09999809999899999999999986798379998316
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.07 E-value=0.0017 Score=35.30 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.+||+|.+|+|||||+|+|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79998999997899999995888
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.0019 Score=34.96 Aligned_cols=23 Identities=48% Similarity=0.768 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
..|.||+|+|||||++.++..+.
T Consensus 4 v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 4 VFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988999719999999999999
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.04 E-value=0.0018 Score=35.15 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|+|||||||+||++.|+-+.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.04 E-value=0.0013 Score=35.95 Aligned_cols=21 Identities=38% Similarity=0.289 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+|.||+|||||||.+.|.-.
T Consensus 25 IgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 25 LGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 997898878999999999998
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.001 Score=36.65 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|+||||+||+||++.|..+.+
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999899999999999997097
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.02 E-value=0.0015 Score=35.56 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=10.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999978999999969
Q 000872 716 LTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g 736 (1245)
++.|+||+||||||+-+.|+.
T Consensus 10 iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899989999998999999999
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.01 E-value=0.002 Score=34.83 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|++|+|||||++.|+|..
T Consensus 3 V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999998999999996777
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.99 E-value=0.0019 Score=35.01 Aligned_cols=23 Identities=43% Similarity=0.801 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|.||+||||||+.+.|+-++.
T Consensus 8 I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 8 ILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp EEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 99982899988999999999858
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.99 E-value=0.0022 Score=34.64 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998699997899999996999
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
..++|.|++|+|||||.+.|+...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.99 E-value=0.0019 Score=34.92 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|+|||||||+|+++.|+-+.+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.98 E-value=0.0016 Score=35.54 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|+|++|+|||||++.|.|.-.
T Consensus 6 V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 6 IIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999889999999967999
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.97 E-value=9.6e-05 Score=43.17 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=18.4
Q ss_pred CEEEECCCCCCHHHHHHHHHC
Q ss_conf 999837999995899979819
Q 000872 1 MTLLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G 21 (1245)
+|+|+|+|||||||+|.+|.-
T Consensus 26 ~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 089988999987999999999
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.95 E-value=0.0012 Score=36.35 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=12.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999869999789999999699
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.++.|.|++||||||+-+.|+.+
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 59999899999989999999997
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.94 E-value=0.0025 Score=34.25 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|+|.+|+|||||+|+|.|...
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999978999999958886
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.92 E-value=0.0025 Score=34.25 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
++||-|++|||||||.+.|+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9997898878999999999998
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.90 E-value=0.0025 Score=34.28 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
-++|+|++|+|||||++.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.90 E-value=0.0021 Score=34.76 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+||+||||||+.+.|+-.+
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.002 Score=34.90 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+||+||||||..+.|+-.+
T Consensus 4 I~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 4 VFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997999999899999999986
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.88 E-value=0.0026 Score=34.12 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|+|.+|+|||||+|.|.|+..
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999869999999858984
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.87 E-value=0.0015 Score=35.63 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+|+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.86 E-value=0.0032 Score=33.52 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.++++|++|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0034 Score=33.38 Aligned_cols=21 Identities=43% Similarity=0.795 Sum_probs=13.2
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 983799999589997981998
Q 000872 3 LLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 3 aIlG~sGSGKSTLL~~L~G~~ 23 (1245)
+++|++++|||||++.|+|.-
T Consensus 5 ~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 5 VIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEESTTSSHHHHHHHHHTSC
T ss_pred EEECCCCCCHHHHHHHHHCCC
T ss_conf 998999998999999996888
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.85 E-value=0.0021 Score=34.70 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=18.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
+.+|.|++||||||+.+.|+-++.
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989999898999999999998
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.84 E-value=0.0024 Score=34.33 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+||+||||||+.+.|+-++
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.84 E-value=0.0027 Score=34.05 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=15.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.++++|.+|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0026 Score=34.17 Aligned_cols=23 Identities=43% Similarity=0.732 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.++.||+||||||+.+.|+-++.
T Consensus 5 I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999999999999999969
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.0041 Score=32.87 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=25.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99948849999869999789999999699
Q 000872 709 GAFRPGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 709 ~~i~~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
|-++||+++.|.|++|+|||+|..-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 89859979999958999999999999999
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.033 Score=27.17 Aligned_cols=49 Identities=6% Similarity=0.070 Sum_probs=30.4
Q ss_pred HHHCCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 98449707455279868-----375989999999999766159889999438984
Q 000872 158 MLVGPAHALFMDEISTG-----LDSSTTFHIVNSLGQFNHILNGTALISLLQPAP 207 (1245)
Q Consensus 158 aL~~~~~IllLDEpTSg-----LD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ 207 (1245)
.-..+++++++|.-+.- -|......++..|+.++...+ .+++.+||...
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~-~~vi~v~H~~K 181 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTG-CSIVFLHHASK 181 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHC-CEEEEEEEC--
T ss_pred HHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC-CCEEHHHHCCC
T ss_conf 7526765896281354226652322568999988777764479-75401310055
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.79 E-value=0.034 Score=27.08 Aligned_cols=137 Identities=18% Similarity=0.127 Sum_probs=67.8
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 7999488499998699997899999996999-998057999997950894433341899724887899999999999998
Q 000872 708 SGAFRPGVLTALMGVTGSGKTTLMDVLAGRK-TRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSA 786 (1245)
Q Consensus 708 s~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~-~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~ 786 (1245)
.|-+++|..+.|.|++|+|||++..-++... ..+ ..+.|+.-+ .+..+......
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~-------------------~~~~~is~e------~~~~~~~~~~~ 74 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVENACANK-------------------ERAILFAYE------ESRAQLLRNAY 74 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTT-------------------CCEEEEESS------SCHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC-------------------CCCCEEECC------CCHHHHHHHHH
T ss_conf 68986984999991899999999999999998723-------------------244112126------79999999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHCCCEEEEECCCC---CCCHHH
Q ss_conf 7029988987789999999999829943222223688888679789999999999-962997658948999---999999
Q 000872 787 WLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVE-LVANPSIIFMDEPTS---GLDARA 862 (1245)
Q Consensus 787 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~-l~~~p~il~lDEpts---glD~~~ 862 (1245)
.... ... +. ...+.....+... ......+. .-.+... --.+|++++.|.-+. +.+...
T Consensus 75 ~~~~----~~~-------~~-~~~~~~~~~~~~~-----~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~ 136 (242)
T d1tf7a2 75 SWGM----DFE-------EM-ERQNLLKIVCAYP-----ESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNNA 136 (242)
T ss_dssp TTSC----CHH-------HH-HHTTSEEECCCCG-----GGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHHH
T ss_pred HCCC----CHH-------HH-HHCCCEEEEEEEC-----CHHHHHHH-HHHHHHHHHHCCCCEEEEECCHHHHCCCCHHH
T ss_conf 8299----869-------98-5458617997300-----01017999-99999999840885332204314304899999
Q ss_pred HHHHHHHHHHHH-HCCCEEEEEECCC
Q ss_conf 999999999987-3898899991588
Q 000872 863 AAVVMRTVRNTV-DTGRTVVCTIHQP 887 (1245)
Q Consensus 863 ~~~i~~~l~~~~-~~~~tvi~~~h~p 887 (1245)
....+..+.+.+ +.+.+++++.|..
T Consensus 137 ~~~~~~~l~~~~~~~~~~~i~~~~~~ 162 (242)
T d1tf7a2 137 FRQFVIGVTGYAKQEEITGLFTNTSD 162 (242)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 99999999999998698399998567
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.78 E-value=0.0016 Score=35.53 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999789999999699
Q 000872 717 TALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+||+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.0026 Score=34.15 Aligned_cols=25 Identities=36% Similarity=0.737 Sum_probs=22.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8499998699997899999996999
Q 000872 714 GVLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 714 G~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
|=.++++|++++|||||++.|.|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.76 E-value=0.004 Score=32.97 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|++|+|||||++.|+|..
T Consensus 11 V~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTST
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999997787
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.75 E-value=0.0039 Score=33.02 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999986999978999999969
Q 000872 715 VLTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g 736 (1245)
+++.|.|++||||||+.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.73 E-value=0.0017 Score=35.31 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=21.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4884999986999978999999969
Q 000872 712 RPGVLTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 712 ~~G~~~ai~G~sGsGKsTLl~~L~g 736 (1245)
...-.+||.|++|||||||++.|..
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9832897438999989999999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.73 E-value=0.0028 Score=33.93 Aligned_cols=42 Identities=24% Similarity=0.470 Sum_probs=26.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECC
Q ss_conf 99837999995899979819989999612599989914898765422897665
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQ 54 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~~~~i~yv~Q 54 (1245)
..++||+|+|||-|.+.|++.+. ---+..++...+ ..|||..
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~-----VPFv~~daT~fT------eaGYvG~ 93 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFT------EVGYVGK 93 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEGGGGC----------CCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC-----CCEEEEECCEEE------ECCEEEC
T ss_conf 79989999889999999998738-----988986255114------1111104
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.70 E-value=0.003 Score=33.69 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=11.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 88499998699997899999996
Q 000872 713 PGVLTALMGVTGSGKTTLMDVLA 735 (1245)
Q Consensus 713 ~G~~~ai~G~sGsGKsTLl~~L~ 735 (1245)
+|-.+.|+||+||||||.-+.|+
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 96389998999998899999999
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.0033 Score=33.47 Aligned_cols=20 Identities=40% Similarity=0.680 Sum_probs=9.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999978999999969
Q 000872 717 TALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g 736 (1245)
++++|.+++|||||++.|.|
T Consensus 8 I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99997999989999999958
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.66 E-value=0.0027 Score=33.99 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=20.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4884999986999978999999969
Q 000872 712 RPGVLTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 712 ~~G~~~ai~G~sGsGKsTLl~~L~g 736 (1245)
++-+++.++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.66 E-value=0.0031 Score=33.61 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+||+||||||+.+.|+-++
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998799999999987
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.66 E-value=0.0027 Score=34.05 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=19.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
+.+|.|++||||||+.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.65 E-value=0.0024 Score=34.32 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=10.4
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 98379999958999798199
Q 000872 3 LLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 3 aIlG~sGSGKSTLL~~L~G~ 22 (1245)
.|+||+||||||+.+.|+-+
T Consensus 12 ~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 12 FVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp EEEECTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 99899999879999999998
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.002 Score=34.87 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999869999789999999699
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
=++||.|++||||||+-+.|...
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHHH
T ss_conf 89999689999876899999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.62 E-value=0.0034 Score=33.39 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=13.7
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 983799999589997981998
Q 000872 3 LLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 3 aIlG~sGSGKSTLL~~L~G~~ 23 (1245)
+++|++||||||+.+.|+-.+
T Consensus 6 il~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 6 FMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEESCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 998899998899999999994
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.62 E-value=0.0024 Score=34.32 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+|.+++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.61 E-value=0.0045 Score=32.65 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|.+|+|||||++.|.|..
T Consensus 8 I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999799998999999995898
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.59 E-value=0.0044 Score=32.68 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
++||-|++||||||+-+.|+...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999787999999999996
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.59 E-value=0.0023 Score=34.50 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+|++.||||||++.|++..
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999699854999999998236
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.58 E-value=0.0049 Score=32.37 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+|++|+|||||++.|+|..
T Consensus 8 I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 8 VAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999996888
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.58 E-value=0.005 Score=32.31 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
+.+|.|++||||||+.+.|+.++.
T Consensus 5 iI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999989999998999999999728
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.57 E-value=0.0042 Score=32.84 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999978999999969999
Q 000872 717 TALMGVTGSGKTTLMDVLAGRKT 739 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g~~~ 739 (1245)
+.|+|||||||+||.+.|....+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.56 E-value=0.0034 Score=33.38 Aligned_cols=20 Identities=40% Similarity=0.544 Sum_probs=11.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999978999999969
Q 000872 717 TALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g 736 (1245)
+||+|++.+|||||++.|.+
T Consensus 8 IaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99990778709999999997
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.54 E-value=0.0036 Score=33.24 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999978999999969999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRKT 739 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~~ 739 (1245)
.++|+|++++|||||++.|.+...
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999889999999967999
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.0043 Score=32.75 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|.||+|||||||++.|+..+.
T Consensus 57 IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 57 LGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 97438999989999999999997
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.0051 Score=32.30 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998699997899999996999
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
..+.|+||||+||+||.+.|..+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.53 E-value=0.0032 Score=33.57 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|.||+||||||..+.|+-++.
T Consensus 6 IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99789998798999999999969
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.52 E-value=0.0033 Score=33.47 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|.+||||||+.+.|+..+
T Consensus 5 i~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999999999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.51 E-value=0.0054 Score=32.12 Aligned_cols=22 Identities=50% Similarity=0.821 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++||+||||||..+.|+-++
T Consensus 6 iil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 6 AVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999986
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.51 E-value=0.0026 Score=34.08 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699997899999996999
Q 000872 717 TALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+||+|++++|||||++.|.|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.51 E-value=0.004 Score=32.93 Aligned_cols=22 Identities=50% Similarity=0.641 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+|++||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.51 E-value=0.0049 Score=32.39 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+++|++.+|||||++.|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99993458849999999970344
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.50 E-value=0.0054 Score=32.14 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998699997899999996999
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.++.|.|++||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 089998999999899999999980
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.50 E-value=0.0045 Score=32.64 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.+.|+|++||||||+.+.|+.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.46 E-value=0.0042 Score=32.83 Aligned_cols=22 Identities=64% Similarity=0.978 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999799999999998
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.43 E-value=0.0036 Score=33.25 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
..+.|++||||||+.+.|+-++.
T Consensus 9 I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 9 IFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889999999999999999986
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.43 E-value=0.0043 Score=32.72 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+||+||||||+.+.|+-++
T Consensus 9 IiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 9 AAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998799999999997
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.41 E-value=0.047 Score=26.20 Aligned_cols=149 Identities=14% Similarity=0.078 Sum_probs=69.3
Q ss_pred EECE-EEEEECCEEEEEECCCCCCHHHHHHHHHCC-CCCCEEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 2241-799948849999869999789999999699-99980579999979508944333418997248878999999999
Q 000872 704 LNGV-SGAFRPGVLTALMGVTGSGKTTLMDVLAGR-KTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYES 781 (1245)
Q Consensus 704 L~~v-s~~i~~G~~~ai~G~sGsGKsTLl~~L~g~-~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~d~~~~~ltv~e~ 781 (1245)
|+++ .|-+++|+++.|.|++|+|||+|..-++.. ...+ ...+.|+.-+ .+..+.
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~------------------~~~~~~~s~e------~~~~~~ 70 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF------------------DEPGVFVTFE------ETPQDI 70 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH------------------CCCEEEEESS------SCHHHH
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC------------------CCCCCCCCCC------CCHHHH
T ss_conf 9885568996983999994799999999999999999856------------------8874201266------799999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHH--HCCCEEEEECCCCCC
Q ss_conf 99998702998898778999999999982994322222368888867978999-999999996--299765894899999
Q 000872 782 LLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK-RLTIAVELV--ANPSIIFMDEPTSGL 858 (1245)
Q Consensus 782 l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk-r~~ia~~l~--~~p~il~lDEptsgl 858 (1245)
......... .. +...+.............. .....+..... .+.-....+ .+|++++.|--+.-.
T Consensus 71 ~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~ 138 (242)
T d1tf7a1 71 IKNARSFGW----DL-------AKLVDEGKLFILDASPDPE-GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVF 138 (242)
T ss_dssp HHHHGGGTC----CH-------HHHHHTTSEEEEECCCCSS-CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTS
T ss_pred HHHHHHCCC----CH-------HHHHHHCCHHHHHHCCCHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999998499----84-------8988714302444210335-44443024589999999999886312220020788998
Q ss_pred ----CHHHH-HHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf ----99999-9999999998738988999915888
Q 000872 859 ----DARAA-AVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 859 ----D~~~~-~~i~~~l~~~~~~~~tvi~~~h~p~ 888 (1245)
+.... ..+...++...+.++|++++.|...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (242)
T d1tf7a1 139 QQYDASSVVRRELFRLVARLKQIGATTVMTTERIE 173 (242)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred HHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 76057267899999999999863971688421025
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.39 E-value=0.007 Score=31.40 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.+.+.||+|+||||+.++++...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998799998889999999998
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.38 E-value=0.0062 Score=31.74 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999869999789999999699
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.++.|+||+||||||+-+.|+..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48999899999889999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.004 Score=32.96 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++||+||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998799999899999999986
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.37 E-value=0.0036 Score=33.21 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=10.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999978999999969
Q 000872 716 LTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g 736 (1245)
.++++|++|+|||||++.|.+
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999967
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.35 E-value=0.0054 Score=32.10 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999789999999699
Q 000872 717 TALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+.|+|||||||+||.+.|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.31 E-value=0.0049 Score=32.42 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998699997899999996999
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
..+.|.||+|+|||||++.++...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998899971999999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.30 E-value=0.0049 Score=32.36 Aligned_cols=21 Identities=52% Similarity=0.754 Sum_probs=11.7
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 983799999589997981998
Q 000872 3 LLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 3 aIlG~sGSGKSTLL~~L~G~~ 23 (1245)
+++|++||||||+.+.|+-++
T Consensus 5 vliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 5 VLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 998899998899999999984
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.30 E-value=0.0043 Score=32.73 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+++|++|+|||||++.|.|...
T Consensus 16 I~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 16 LVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999898999999967887
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.29 E-value=0.0069 Score=31.44 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99983799999589997981998
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~ 23 (1245)
+.+|+||+||||||+.+.|+-.+
T Consensus 10 iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999999899999999985
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.28 E-value=0.0052 Score=32.24 Aligned_cols=21 Identities=43% Similarity=0.827 Sum_probs=15.1
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 983799999589997981998
Q 000872 3 LLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 3 aIlG~sGSGKSTLL~~L~G~~ 23 (1245)
+++||+||||||+.+.|+-++
T Consensus 6 vl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 6 VLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 998999999899999999996
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.0032 Score=33.53 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998699997899999996999
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
-.++|+|++++|||||++.|.+..
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.0046 Score=32.57 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=20.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
+.+|.||+||||||+.+.|+-++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.0036 Score=33.24 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=22.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8849999869999789999999699
Q 000872 713 PGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 713 ~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.|.++.+.|++||||||+-+.|+.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9969998899999999999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.19 E-value=0.0072 Score=31.35 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999869999789999999699
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.+++|.|++||||||+.+.|+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998989999999999
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.19 E-value=0.0054 Score=32.10 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.++++|.-.||||||+++|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.19 E-value=0.0088 Score=30.80 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=26.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEEC
Q ss_conf 88499998699997899999996999-998057999997
Q 000872 713 PGVLTALMGVTGSGKTTLMDVLAGRK-TRGYITGNITIS 750 (1245)
Q Consensus 713 ~G~~~ai~G~sGsGKsTLl~~L~g~~-~~~~~~G~i~~~ 750 (1245)
..-.++|.|++|+|||||++.|.... ..+.--|-+.+|
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 815986117998889999999999876368751344346
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.16 E-value=0.0061 Score=31.80 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
..|.||+|||||||++.|...+
T Consensus 54 igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 54 VGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8611799888999999999987
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.15 E-value=0.0074 Score=31.27 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|+||+.+|||||++.|+|...
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 99997248869999999970412
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.14 E-value=0.0046 Score=32.57 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|++|+|||||++.+.+.-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996598
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.11 E-value=0.007 Score=31.41 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+++|++|+|||||++.|.|...
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHCCCCC
T ss_conf 99999999899999999808998
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.11 E-value=0.0047 Score=32.48 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+|++|+|||||++.+.+..
T Consensus 3 V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 3 VLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999998099
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.10 E-value=0.0069 Score=31.44 Aligned_cols=22 Identities=32% Similarity=0.271 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+|++.||||||++.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.10 E-value=0.0054 Score=32.12 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=23.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488499998699997899999996999
Q 000872 712 RPGVLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 712 ~~G~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.|+-++.+.||+||||||++..+....
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~ 182 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQEL 182 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 410548987678777447799986662
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.08 E-value=0.0055 Score=32.07 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699997899999996999
Q 000872 717 TALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+.+.||+|+||||+.++|+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 8987999973889999998503
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.04 E-value=0.0051 Score=32.26 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|.|++||||||+.+.|+.++.
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989899898999999999998
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.01 E-value=0.0039 Score=33.01 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+++|++++|||||++.|.|...
T Consensus 19 I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 19 VAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99988999989999999858985
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.97 E-value=0.0064 Score=31.67 Aligned_cols=21 Identities=48% Similarity=0.613 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999789999999699
Q 000872 717 TALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+.+-||+|.||||+.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 898897998788899999998
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.97 E-value=0.0057 Score=31.96 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+++|++|+|||||++.+.+...
T Consensus 3 I~liG~~nvGKSSLln~l~~~~~ 25 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDRL 25 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999999999999958998
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.95 E-value=0.0071 Score=31.36 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+++++|++++|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.93 E-value=0.0053 Score=32.19 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=18.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999869999789999999699
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.-+.++||+|+|||.|-++|+..
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 66999899998888999998621
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.0088 Score=30.78 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=30.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 9998379999958999798199899996125999899148987654228976655465778
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGE 61 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~~~~i~yv~Q~d~l~~~ 61 (1245)
+.+|.|++||||||+.+.|...+... .....+..+++++.+.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH-----------------CCCCCEEEEEEEEEECCC
T ss_conf 99996899998768999999997304-----------------689965999521568984
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.92 E-value=0.0026 Score=34.16 Aligned_cols=23 Identities=43% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
..++|++||||||+.+.|+-++.
T Consensus 22 I~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 22 VWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889999999999999999997
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.91 E-value=0.052 Score=25.90 Aligned_cols=24 Identities=46% Similarity=0.401 Sum_probs=19.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 849999869999789999999699
Q 000872 714 GVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 714 G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
..++.++||+|+||||.+-=|+.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.90 E-value=0.0074 Score=31.25 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
++.++|++|+|||||++.|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.85 E-value=0.0072 Score=31.33 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.++++|.-.||||||+++|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.83 E-value=0.011 Score=30.29 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999869999789999999699
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.++.++|.+||||||+.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.81 E-value=0.0066 Score=31.56 Aligned_cols=20 Identities=45% Similarity=0.689 Sum_probs=11.5
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 98379999958999798199
Q 000872 3 LLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 3 aIlG~sGSGKSTLL~~L~G~ 22 (1245)
+++|.+|+|||||++.+.+.
T Consensus 9 ~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 9 LILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHCC
T ss_conf 99999998999999999679
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.81 E-value=0.0085 Score=30.87 Aligned_cols=21 Identities=38% Similarity=0.384 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999789999999699
Q 000872 717 TALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+.+.||+|+||||+.++++..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999789997487999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.80 E-value=0.0049 Score=32.39 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|-|+.||||||+++.|+..+.
T Consensus 12 I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 12 VLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99889999888999999998707
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.79 E-value=0.0087 Score=30.83 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.++++|.+|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.79 E-value=0.0096 Score=30.56 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488499998699997899999996999
Q 000872 712 RPGVLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 712 ~~G~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+.+.++.|+||+||||||+-+.|+...
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 678289998999998799999999986
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.77 E-value=0.071 Score=25.05 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=33.6
Q ss_pred CCCCEEEEECCCCCC---CHHHHHHHHHHHHHHHHHCCCEEEEEECCC---------CHHHHHHCCCEEEEC
Q ss_conf 497074552798683---759899999999997661598899994389---------846896201368834
Q 000872 161 GPAHALFMDEISTGL---DSSTTFHIVNSLGQFNHILNGTALISLLQP---------APEVYNLFDDIILVS 220 (1245)
Q Consensus 161 ~~~~IllLDEpTSgL---D~~s~~~I~~~L~~~~~~~~~t~iv~i~q~---------~~ei~~l~D~I~vL~ 220 (1245)
.++++++.|..+.-+ +..........|....+..+.+.+++.|.+ .....+.+|.++.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred CCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 088533220431430489999999999999999998698399998567512554457764046421699999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.75 E-value=0.0091 Score=30.70 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.+.|+||+||||||+.+.|+..
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889999989999999998
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.73 E-value=0.012 Score=29.82 Aligned_cols=29 Identities=34% Similarity=0.517 Sum_probs=25.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99948849999869999789999999699
Q 000872 709 GAFRPGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 709 ~~i~~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
|-+++|+++.|.|++|+|||||..-++-.
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99869969999838999889999999998
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.73 E-value=0.012 Score=30.02 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.+.|+||+||||||.-+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.73 E-value=0.011 Score=30.13 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.73 E-value=0.011 Score=30.08 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.++|.||+||||||.-+.|+...
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.71 E-value=0.012 Score=30.00 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.2
Q ss_pred CEEEECCCCCCHHHHHHHHHC
Q ss_conf 999837999995899979819
Q 000872 1 MTLLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G 21 (1245)
+.+++|++||||||+.+-++-
T Consensus 16 liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 16 VVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999989999999997
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.67 E-value=0.0093 Score=30.65 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.++++|.+|+|||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999668
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.63 E-value=0.0097 Score=30.51 Aligned_cols=21 Identities=38% Similarity=0.303 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++||++||||||++.|++.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999947898499999999998
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.011 Score=30.08 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.+.+.|++||||||+-+.|+.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.62 E-value=0.0087 Score=30.83 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
-++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.57 E-value=0.012 Score=29.96 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699997899999996999
Q 000872 717 TALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+.|+|++||||||+.+.|+.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.56 E-value=0.015 Score=29.25 Aligned_cols=41 Identities=27% Similarity=0.318 Sum_probs=27.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCE
Q ss_conf 48849999869999789999999699999805799999795
Q 000872 712 RPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY 752 (1245)
Q Consensus 712 ~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~ 752 (1245)
+.|.++-+.|.|||||||+-+.|..+.......-.+.+||-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD 62 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 62 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 99869999899999989999999988777427508997536
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.46 E-value=0.017 Score=29.03 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+++|.+|||||||++.|.+...
T Consensus 18 I~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 18 VIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999898999999966888
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.044 Score=26.35 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.42 E-value=0.04 Score=26.66 Aligned_cols=34 Identities=29% Similarity=0.268 Sum_probs=25.6
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 22241799948849999869999789999999699
Q 000872 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 703 ~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.++..... -.|.-+.|.|+||+|||||...|..+
T Consensus 5 ~~H~~~v~-~~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLE-VFGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEE-ETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 17899999-99999999818999989999999985
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.42 E-value=0.02 Score=28.53 Aligned_cols=28 Identities=39% Similarity=0.602 Sum_probs=23.9
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 7999488499998699997899999996
Q 000872 708 SGAFRPGVLTALMGVTGSGKTTLMDVLA 735 (1245)
Q Consensus 708 s~~i~~G~~~ai~G~sGsGKsTLl~~L~ 735 (1245)
.|-+++|+++.|.|++|+||||+..-++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.41 E-value=0.015 Score=29.32 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.+.|+|++||||||+-+.|+..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999989999999998
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.40 E-value=0.0091 Score=30.69 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=15.8
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 99983799999589997981
Q 000872 1 MTLLLGPPGSGKTTLMLALA 20 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~ 20 (1245)
+.+|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.40 E-value=0.02 Score=28.53 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=25.9
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 799948849999869999789999999699
Q 000872 708 SGAFRPGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 708 s~~i~~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.|-+++|+++.|.|++|+|||++..-++-.
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 798628859999917999989999999999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.35 E-value=0.012 Score=29.85 Aligned_cols=33 Identities=33% Similarity=0.462 Sum_probs=25.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 99837999995899979819989999612599989914
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHD 39 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~ 39 (1245)
.++.||+|+||||+.+.|++++. .+-+.+|+.+
T Consensus 35 ilL~GpPGtGKT~la~~la~~~~-----~~~~~i~~d~ 67 (273)
T d1gvnb_ 35 FLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDNDT 67 (273)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTT-----TCCEEECTHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-----CCEEEEECHH
T ss_conf 99889799889999999999865-----1548983289
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.33 E-value=0.012 Score=29.86 Aligned_cols=26 Identities=35% Similarity=0.647 Sum_probs=21.4
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 948849999869999789999999699
Q 000872 711 FRPGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 711 i~~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++. .+||+|...+|||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.31 E-value=0.0054 Score=32.11 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=19.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
+.+|.|+|||||||+.+.|.-.+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989997809999999999971
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.30 E-value=0.0083 Score=30.96 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699997899999996999
Q 000872 717 TALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+.+.||+|+|||+|.+++++..
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 8876689888359999999873
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.30 E-value=0.0064 Score=31.65 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.25 E-value=0.016 Score=29.21 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.+.++|++||||||+-+.|+.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.25 E-value=0.017 Score=28.98 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.+.|+|++||||||+-+.|+.+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.19 E-value=0.014 Score=29.52 Aligned_cols=23 Identities=39% Similarity=0.390 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999869999789999999699
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.-+.+.||+|+|||++.++|+..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 07998896999889999998620
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.18 E-value=0.016 Score=29.22 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999986999978999999969
Q 000872 715 VLTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g 736 (1245)
-++||.|++||||||+.+.|..
T Consensus 4 ~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989887789999999998
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.16 E-value=0.016 Score=29.22 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=24.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 99837999995899979819989999612599989914
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHD 39 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~ 39 (1245)
..++||+|+|||.|.++|+.... .--+.+++.+
T Consensus 52 iLl~GPpG~GKT~lAkalA~~~~-----~~~~~i~~s~ 84 (309)
T d1ofha_ 52 ILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATK 84 (309)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGG
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-----CCHHCCCCCC
T ss_conf 99989999888899999862132-----2100034433
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.16 E-value=0.014 Score=29.59 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.++++|++|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999648
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.12 E-value=0.015 Score=29.26 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=21.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48849999869999789999999699
Q 000872 712 RPGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 712 ~~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
++..-+.+.||+|+|||++.++|+..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 98886786689988822899999998
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.11 E-value=0.019 Score=28.71 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+|-+-+|||||+|+|+|--
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 7688999998999999997889
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.09 E-value=0.019 Score=28.71 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=18.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48849999869999789999999699
Q 000872 712 RPGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 712 ~~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+.|-+++|-|+.||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98059999899888999999999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.06 E-value=0.02 Score=28.60 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
++.|.|++||||||+.+.|+.+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.91 E-value=0.022 Score=28.24 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.91 E-value=0.016 Score=29.14 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998699997899999996999
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
-.++|-|+.||||||+++.|+...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.89 E-value=0.02 Score=28.55 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.+.|+||+||||||.-+.|+..
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.89 E-value=0.015 Score=29.32 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
++.|.||+||||||++.-++....
T Consensus 25 v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999995899999999999999998
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.89 E-value=0.025 Score=27.94 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=25.1
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 79994884999986999978999999969
Q 000872 708 SGAFRPGVLTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 708 s~~i~~G~~~ai~G~sGsGKsTLl~~L~g 736 (1245)
.|-+++|+++.|.|++|+|||++..-++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69976897999988998878899999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.89 E-value=0.02 Score=28.56 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699997899999996999
Q 000872 717 TALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+.++|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.87 E-value=0.003 Score=33.72 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|++++|||||++.|+|+.
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.86 E-value=0.015 Score=29.30 Aligned_cols=19 Identities=42% Similarity=0.436 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9983799999589997981
Q 000872 2 TLLLGPPGSGKTTLMLALA 20 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~ 20 (1245)
.+|.|+.||||||+.+.+.
T Consensus 5 IgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9988888788999999999
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.85 E-value=0.023 Score=28.13 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998699997899999996
Q 000872 716 LTALMGVTGSGKTTLMDVLA 735 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~ 735 (1245)
++||.|++|||||||-+.|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99837998788999999999
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.85 E-value=0.016 Score=29.08 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=13.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998699997899999996
Q 000872 717 TALMGVTGSGKTTLMDVLA 735 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~ 735 (1245)
+||+|..|||||||...|.
T Consensus 9 i~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999589899899999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.82 E-value=0.024 Score=28.08 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.+.|+|++||||||+-+.|+.+.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.82 E-value=0.012 Score=29.87 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
-+.+.||+|+|||++.++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHHHH
T ss_conf 46876699888308999999874
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.81 E-value=0.015 Score=29.31 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|++|+|||||++.+.+..
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999969899999997098
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.06 Score=25.53 Aligned_cols=18 Identities=28% Similarity=0.528 Sum_probs=8.8
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 983799999589997981
Q 000872 3 LLLGPPGSGKTTLMLALA 20 (1245)
Q Consensus 3 aIlG~sGSGKSTLL~~L~ 20 (1245)
+|+|++|+|||||++.+.
T Consensus 8 ~liG~~~vGKTsLl~~~~ 25 (167)
T d1xtqa1 8 AILGYRSVGKSSLTIQFV 25 (167)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999989929899999997
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.79 E-value=0.016 Score=29.11 Aligned_cols=20 Identities=55% Similarity=0.597 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999995899979819
Q 000872 2 TLLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G 21 (1245)
.+|+||.|||||||...|+.
T Consensus 5 v~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99994889809999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.77 E-value=0.014 Score=29.43 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.76 E-value=0.019 Score=28.69 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999789999999699
Q 000872 717 TALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+.+-||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.75 E-value=0.012 Score=29.87 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=22.4
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9488499998699997899999996999
Q 000872 711 FRPGVLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 711 i~~G~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+++..-+.+.||+|+|||+|.+++++..
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 9988757887899876304778878771
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.75 E-value=0.017 Score=29.05 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=31.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 99983799999589997981998999961259998991489876542289766554657788989999999
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFS 71 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~~~~~~~~~~i~yv~Q~d~l~~~lTVrEnL~f~ 71 (1245)
+.+|.|++|||||||...|.-.+... .| ....++.++.+|.. +|-.|-...+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---~~-------------~~~~v~~iS~DdfY---~t~~~r~~L~ 80 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---YG-------------GEKSIGYASIDDFY---LTHEDQLKLN 80 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---HG-------------GGSCEEEEEGGGGB---CCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---HC-------------CCCCEEEECCCCCC---CCHHHHHHHH
T ss_conf 99837998788999999999999987---27-------------78606763567777---8889999985
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=93.74 E-value=0.015 Score=29.34 Aligned_cols=21 Identities=33% Similarity=0.324 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++||+++|||||++.|++.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999958898099999999999
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.71 E-value=0.026 Score=27.87 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.+.|+||+||||||+-+.|+...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.69 E-value=0.0038 Score=33.06 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.++++|++++|||||++.|.|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.69 E-value=0.024 Score=27.98 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=21.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88499998699997899999996999
Q 000872 713 PGVLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 713 ~G~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.+..+.|.|++|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.67 E-value=0.016 Score=29.12 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.67 E-value=0.043 Score=26.47 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=24.8
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 22241799948849999869999789999999699
Q 000872 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 703 ~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.++. +...-.|.-+.++|+||+|||||...|..+
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 2899-999999999999808999989999999985
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.66 E-value=0.026 Score=27.86 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+|..+||||||+|+|+|.-
T Consensus 27 ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCHHHHHHHHHCCC
T ss_conf 9998189897999999996899
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.023 Score=28.21 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999978999999969999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRKT 739 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~~ 739 (1245)
+++++|.+|+|||||++.+.+...
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~~ 30 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNKF 30 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999198999999961999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.61 E-value=0.011 Score=30.23 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|-|+.||||||+++.|+..++
T Consensus 5 I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 5 ISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99987888779999999999973
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.54 E-value=0.023 Score=28.16 Aligned_cols=22 Identities=50% Similarity=0.604 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|++|+|||||++.+.+..
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989999999996487
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.54 E-value=0.019 Score=28.66 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
++|.||+|+|||||++.++.+..
T Consensus 32 i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 32 TLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99986999829999999999779
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.54 E-value=0.021 Score=28.35 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.47 E-value=0.022 Score=28.24 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999997197
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.46 E-value=0.02 Score=28.54 Aligned_cols=20 Identities=45% Similarity=0.566 Sum_probs=16.8
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 99983799999589997981
Q 000872 1 MTLLLGPPGSGKTTLMLALA 20 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~ 20 (1245)
+.+|.|+.||||||..+.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.44 E-value=0.031 Score=27.29 Aligned_cols=23 Identities=48% Similarity=0.758 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.++.||+|+||||++.+++.+..
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99987999988899999999987
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.42 E-value=0.031 Score=27.37 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.+.|+||+||||||+.+.|+.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.41 E-value=0.023 Score=28.10 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999789999999699
Q 000872 717 TALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+.+-||+|+||||+.++++..
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHH
T ss_conf 999889998705469999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.41 E-value=0.026 Score=27.76 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+++++|++|+|||||++.+.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.36 E-value=0.019 Score=28.70 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.36 E-value=0.025 Score=27.94 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8499998699997899999996999
Q 000872 714 GVLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 714 G~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
...+.|.||+|.||||+++.++...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8816888989998999999999997
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.33 E-value=0.03 Score=27.39 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+|.-+||||||+|+|+|.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9997689897999999996898
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=93.28 E-value=0.026 Score=27.82 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++||+.+|||||++.|+..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.28 E-value=0.019 Score=28.64 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=23.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 884999986999978999999969999
Q 000872 713 PGVLTALMGVTGSGKTTLMDVLAGRKT 739 (1245)
Q Consensus 713 ~G~~~ai~G~sGsGKsTLl~~L~g~~~ 739 (1245)
.+..++|-|+.||||||+++.|+....
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.27 E-value=0.028 Score=27.59 Aligned_cols=33 Identities=39% Similarity=0.727 Sum_probs=26.2
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 222417999488499998699997899999996999
Q 000872 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 703 ~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+|+.++. |=-+++|+|+.++||||||+.|.|..
T Consensus 24 ~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 9970799---87999988999997999999980998
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.27 E-value=0.03 Score=27.46 Aligned_cols=23 Identities=48% Similarity=0.777 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+++|.+|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.02 Score=28.52 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
+.+|+||-++|||||||.|.|...
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999889999979999999809987
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.17 E-value=0.032 Score=27.23 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999978999999969
Q 000872 716 LTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g 736 (1245)
++||.|+.||||||..+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.17 E-value=0.032 Score=27.27 Aligned_cols=23 Identities=61% Similarity=0.816 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
..+.||+|+||||++++++.++.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99978999748799999999987
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.16 E-value=0.027 Score=27.70 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999995899979819
Q 000872 2 TLLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G 21 (1245)
.+++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.12 E-value=0.052 Score=25.90 Aligned_cols=34 Identities=29% Similarity=0.213 Sum_probs=26.1
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 22241799948849999869999789999999699
Q 000872 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 703 ~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.++. ++..-.|.-+.|.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=93.10 E-value=0.02 Score=28.57 Aligned_cols=27 Identities=30% Similarity=0.159 Sum_probs=23.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488499998699997899999996999
Q 000872 712 RPGVLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 712 ~~G~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+.+.++.+.||+|+|||++.++|++..
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 976769998999988899999999985
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.09 E-value=0.025 Score=27.92 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999995899979819
Q 000872 2 TLLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G 21 (1245)
+.|+|-+.+|||||+++|++
T Consensus 13 iGivG~Pn~GKSTlfnalT~ 32 (296)
T d1ni3a1 13 TGIVGMPNVGKSTFFRAITK 32 (296)
T ss_dssp EEEEECSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99978999989999999977
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.09 E-value=0.025 Score=27.94 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999995899979819
Q 000872 2 TLLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G 21 (1245)
.+++||+++|||||+..|+.
T Consensus 6 i~viGHVd~GKTTL~~~Ll~ 25 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLLM 25 (224)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99994479999999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.08 E-value=0.036 Score=26.90 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=12.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 84999986999978999999969
Q 000872 714 GVLTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 714 G~~~ai~G~sGsGKsTLl~~L~g 736 (1245)
|..++|-|+.||||||+.+.|..
T Consensus 2 gkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 87899989988879999999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.07 E-value=0.043 Score=26.42 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=19.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8849999869999789999999699
Q 000872 713 PGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 713 ~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+..+++++||+|+||||.+-=|+.+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999889999999999
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.05 E-value=0.027 Score=27.72 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|++|+|||||++.+.+..
T Consensus 6 i~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999979989999999998098
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.04 E-value=0.028 Score=27.62 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.+||+|.+.+|||||+++|+|-.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.03 E-value=0.023 Score=28.15 Aligned_cols=21 Identities=43% Similarity=0.700 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|.+|+|||||++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999719
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.02 E-value=0.023 Score=28.18 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.032 Score=27.26 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|.+|+|||||++-+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.99 E-value=0.031 Score=27.32 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.++.|+||+||||+...|..+-
T Consensus 17 vl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 17 VLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9998089999899999999859
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.044 Score=26.36 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.97 E-value=0.038 Score=26.78 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=16.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88499998699997899999996999
Q 000872 713 PGVLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 713 ~G~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
.|..+++-|+.||||||+.+.|+.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 76899998998886999999999999
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.96 E-value=0.029 Score=27.51 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.++.|+||+||||+...|..+-.
T Consensus 18 vli~G~sG~GKS~lal~l~~~G~ 40 (177)
T d1knxa2 18 VLLTGRSGIGKSECALDLINKNH 40 (177)
T ss_dssp EEEEESSSSSHHHHHHHHHTTTC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99981899998999999998597
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.95 E-value=0.03 Score=27.42 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++++|++|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.94 E-value=0.12 Score=23.70 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|++|+|||||++.+.+.
T Consensus 8 i~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999719
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=92.91 E-value=0.013 Score=29.74 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=12.7
Q ss_pred EEECCCCCCHHHHHHHHHCCCC
Q ss_conf 9837999995899979819989
Q 000872 3 LLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 3 aIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+.|++|+||||+++.+++.++
T Consensus 32 Ll~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 32 LVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp EEECCGGGCTTHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHHHCC
T ss_conf 9988998529999999987379
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.90 E-value=0.03 Score=27.38 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999789999999699
Q 000872 717 TALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+.+.||+|+||||+.++++..
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999889987755899999998
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=0.043 Score=26.42 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+++++|.+|+|||||++-+.+..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~ 26 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGT 26 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989979899999997099
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.87 E-value=0.021 Score=28.38 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=14.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999978999999969
Q 000872 716 LTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g 736 (1245)
.++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999988733
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.86 E-value=0.041 Score=26.59 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++++|.+|+|||||++-+.+.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999829
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.82 E-value=0.028 Score=27.65 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|-|.-||||||+++.|..++.
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989987899999999999998
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.81 E-value=0.024 Score=28.08 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|.+|+|||||++.+.+..
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999967899999998688
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.81 E-value=0.029 Score=27.51 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.79 E-value=0.033 Score=27.15 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++++|.+|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.044 Score=26.39 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989929999999997286
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.77 E-value=0.037 Score=26.86 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+++++|.+|+|||||++.+.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.71 E-value=0.029 Score=27.50 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=19.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8849999869999789999999699
Q 000872 713 PGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 713 ~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.+..++++||+|+||||.+-=|+.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9779999899999889999999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.69 E-value=0.025 Score=27.91 Aligned_cols=20 Identities=40% Similarity=0.757 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999995899979819
Q 000872 2 TLLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G 21 (1245)
.+|+|++|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999961
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.69 E-value=0.03 Score=27.40 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++||+|+||||.+-=|+-++
T Consensus 14 i~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999999
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.64 E-value=0.071 Score=25.06 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999869999789999999699
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
-.+||+|-+.+|||||+++|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 37999789999899999999778
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.63 E-value=0.028 Score=27.58 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=28.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99765894899999999999999999998738988999915888
Q 000872 845 NPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 845 ~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~ 888 (1245)
+.+++++||.-. |...+...+.+.+... .....+|++++.+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~-~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSC
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCC-CCCCCCEEEECCCC
T ss_conf 724999424333-4543111221002213-56643000102111
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.61 E-value=0.031 Score=27.37 Aligned_cols=37 Identities=27% Similarity=0.385 Sum_probs=23.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 99837999995899979819989999612599989914
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHD 39 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~ 39 (1245)
.-+.|.|||||||+.+.|.-++... .---.+.++|..
T Consensus 27 IwltGlsGsGKTTia~~L~~~l~~~-~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 27 IWLTGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDN 63 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCHH
T ss_conf 9998999999899999999887774-275089975367
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.61 E-value=0.059 Score=25.56 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=25.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9994884999986999978999999969
Q 000872 709 GAFRPGVLTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 709 ~~i~~G~~~ai~G~sGsGKsTLl~~L~g 736 (1245)
|-+++|.++-|.|++|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.032 Score=27.26 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.58 E-value=0.047 Score=26.18 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999978999999969
Q 000872 716 LTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g 736 (1245)
++||.|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.57 E-value=0.03 Score=27.39 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|.+|+|||||++.+.+..
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989939999999997199
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.56 E-value=0.024 Score=28.05 Aligned_cols=23 Identities=43% Similarity=0.569 Sum_probs=18.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99983799999589997981998
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~ 23 (1245)
+++|.|.-|||||||++-++...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.55 E-value=0.042 Score=26.48 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=27.1
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 41799948849999869999789999999699
Q 000872 706 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 706 ~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
|.=..+-.|+..+|.|++|+|||+|+..++..
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 41256457875568679998878999999997
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.54 E-value=0.033 Score=27.14 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=15.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999869999789999999699
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.+++++||+|+||||.+-=|+.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999989999999999
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.50 E-value=0.029 Score=27.56 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=19.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99983799999589997981998
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~ 23 (1245)
++.|.|++||||||+..-++-..
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~~ 58 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVTC 58 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998389998899999999986
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.49 E-value=0.045 Score=26.30 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=18.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8849999869999789999999699
Q 000872 713 PGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 713 ~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
...+++++||+|+||||.+-=|+.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999989999999999
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.46 E-value=0.031 Score=27.32 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+|.+|+|||||++.+.+..
T Consensus 7 ivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999949899999997299
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.43 E-value=0.055 Score=25.75 Aligned_cols=23 Identities=52% Similarity=0.947 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
..+.||+|+|||++.+.|+.+..
T Consensus 48 iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCCCHHHHHHHHHCC
T ss_conf 78668998882289999999829
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.046 Score=26.26 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
++.++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.06 Score=25.54 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
++.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.39 E-value=0.028 Score=27.64 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999995899979819
Q 000872 2 TLLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G 21 (1245)
.+++|.+|+|||||++-+.+
T Consensus 8 i~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999799999999973
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.38 E-value=0.04 Score=26.66 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+++++|.+|+|||||++.+.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999939999999996299
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.36 E-value=0.029 Score=27.55 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=26.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC---CE-----EEEEEEECCEE
Q ss_conf 49999869999789999999699999---80-----57999997950
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGRKTR---GY-----ITGNITISGYP 753 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~~~~---~~-----~~G~i~~~g~~ 753 (1245)
-+++|+|.+|+|||||++.+.+.... .+ ..-.+.+||.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 51 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE 51 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEE
T ss_conf 38999998992989999999719888544754211310388317679
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.36 E-value=0.031 Score=27.30 Aligned_cols=19 Identities=37% Similarity=0.831 Sum_probs=11.5
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9837999995899979819
Q 000872 3 LLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 3 aIlG~sGSGKSTLL~~L~G 21 (1245)
+++|.+|+|||||++.+.+
T Consensus 11 ~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 11 LIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999899088999999971
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.35 E-value=0.023 Score=28.10 Aligned_cols=19 Identities=37% Similarity=0.751 Sum_probs=10.8
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9837999995899979819
Q 000872 3 LLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 3 aIlG~sGSGKSTLL~~L~G 21 (1245)
+++|.+|+|||||++.+++
T Consensus 10 ~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 10 LLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEECCCCC-----------
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999999499999999970
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.31 E-value=0.048 Score=26.15 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++|+|++|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.30 E-value=0.048 Score=26.14 Aligned_cols=23 Identities=57% Similarity=0.872 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
..+.||+|+||||+.++++.++.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 89879999738899999985038
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.28 E-value=0.063 Score=25.41 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=21.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48849999869999789999999699
Q 000872 712 RPGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 712 ~~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+|...+.++||+|+|||.|.+.|+..
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87658999778750069999999863
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.26 E-value=0.063 Score=25.39 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=24.4
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 948849999869999789999999699
Q 000872 711 FRPGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 711 i~~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.+||.++++-|+=||||||+.+.++.-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 799829999668776588999998764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.25 E-value=0.048 Score=26.14 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+++++|.+|+|||||++-+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.25 E-value=0.038 Score=26.78 Aligned_cols=23 Identities=43% Similarity=0.419 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+++||+|+||||.+-=|+-++.
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999988999999999999
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.25 E-value=0.026 Score=27.86 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
++.+.||+|.||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8996789998999999999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.23 E-value=0.067 Score=25.24 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+++||+|+||||.+-=|+-++.
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999998999999999999
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.19 E-value=0.031 Score=27.37 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+++||+|+||||.+-=|+-++.
T Consensus 15 i~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp EEEECSCCC----HHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999998999999999999
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.18 E-value=0.045 Score=26.31 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|.+|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.064 Score=25.36 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++++|.+|+|||||++-+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.15 E-value=0.03 Score=27.39 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|++|+|||||++.+.+..
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~~ 41 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIGE 41 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCSE
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999998899998873387
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.13 E-value=0.062 Score=25.43 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|.||+|+||||+++.++..+.
T Consensus 46 lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 46 ATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 68889899989999999999975
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.12 E-value=0.045 Score=26.29 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
+.|+|-+-+|||||+++|++-
T Consensus 5 ~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 5 CGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 888899999889999999779
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.10 E-value=0.045 Score=26.28 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+|+|.+|+|||||++.+.+.
T Consensus 8 ivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 8 CVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999749
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.10 E-value=0.032 Score=27.21 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=12.7
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 983799999589997981998
Q 000872 3 LLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 3 aIlG~sGSGKSTLL~~L~G~~ 23 (1245)
+++|++|+|||||++.+.+..
T Consensus 16 vlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 16 LMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEETTSSHHHHHHHTTCCC
T ss_pred EEECCCCCCHHHHHHHHHCCC
T ss_conf 999999987899999984488
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.09 E-value=0.06 Score=25.55 Aligned_cols=23 Identities=48% Similarity=0.697 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
..+.||+|+|||++.++|+.+..
T Consensus 43 vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99889699988999999862010
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.055 Score=25.78 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++++|.+|+|||||++-+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.04 E-value=0.057 Score=25.68 Aligned_cols=22 Identities=36% Similarity=0.506 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699997899999996999
Q 000872 717 TALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.046 Score=26.25 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++++|.+|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.00 E-value=0.029 Score=27.54 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998699997899999996
Q 000872 717 TALMGVTGSGKTTLMDVLA 735 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~ 735 (1245)
++|+|.-++|||||++.|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHH
T ss_conf 9999527989999999999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.97 E-value=0.063 Score=25.39 Aligned_cols=20 Identities=25% Similarity=0.502 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999995899979819
Q 000872 2 TLLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G 21 (1245)
.+++|.+|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999298999999973
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.95 E-value=0.044 Score=26.40 Aligned_cols=19 Identities=42% Similarity=0.683 Sum_probs=9.8
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9983799999589997981
Q 000872 2 TLLLGPPGSGKTTLMLALA 20 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~ 20 (1245)
++|+|++|||||+++..+.
T Consensus 53 ~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 53 LLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 8999079996899999999
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.89 E-value=0.055 Score=25.78 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.89 E-value=0.063 Score=25.37 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+++++|.+|+|||||++.+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.89 E-value=0.051 Score=25.97 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++++|.+|+|||||++.+.+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.88 E-value=0.057 Score=25.65 Aligned_cols=22 Identities=55% Similarity=0.990 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
..+.||+|+||||++++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.86 E-value=0.041 Score=26.58 Aligned_cols=23 Identities=48% Similarity=0.801 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
..+.||+|+|||++.++++++..
T Consensus 44 iLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 44 VLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp EEEBCCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 78878998763047788787718
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=91.83 E-value=0.043 Score=26.41 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998379999958999798199
Q 000872 1 MTLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~ 22 (1245)
+++|.|++|+||||++.-++-.
T Consensus 37 l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 37 VIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8999947999799999999972
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.82 E-value=0.045 Score=26.32 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+|+|.+|+|||||++.+.+..
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989938899999997199
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.81 E-value=0.066 Score=25.28 Aligned_cols=23 Identities=48% Similarity=0.736 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+++|-|.-||||||+.+.|..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.76 E-value=0.039 Score=26.70 Aligned_cols=21 Identities=48% Similarity=0.548 Sum_probs=17.6
Q ss_pred CEEEECCCCCCHHHHHHHHHC
Q ss_conf 999837999995899979819
Q 000872 1 MTLLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G 21 (1245)
++.|.||+||||||+..-++-
T Consensus 38 ~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999985898988999999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.74 E-value=0.048 Score=26.15 Aligned_cols=43 Identities=30% Similarity=0.435 Sum_probs=27.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCCCCCCCEEEEECCC
Q ss_conf 99986999978999999969999980579999979508944333418997248
Q 000872 717 TALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQN 769 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~ 769 (1245)
+.++||+|+|||-|.+.|++..... =+..++ ..|. ..|||-.+
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~VP----Fv~~da-----T~fT-eaGYvG~D 94 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLANAP----FIKVEA-----TKFT-EVGYVGKE 94 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCC----EEEEEG-----GGGC-----CCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC----EEEEEC-----CEEE-ECCEEECC
T ss_conf 7998999988999999999873898----898625-----5114-11111044
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.73 E-value=0.046 Score=26.26 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|.+|+|||||++-+.+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999993989999999829
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.72 E-value=0.049 Score=26.07 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9983799999589997981
Q 000872 2 TLLLGPPGSGKTTLMLALA 20 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~ 20 (1245)
.+++||+++|||||...|+
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999478998999999999
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.71 E-value=0.047 Score=26.19 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.++.|+||+||||+...+..+
T Consensus 18 vli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 18 VLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999808999999999999984
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.70 E-value=0.036 Score=26.89 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999995899979819
Q 000872 2 TLLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G 21 (1245)
.+++|.+|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999099999999970
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.064 Score=25.36 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998699997899999996999
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
-++.++|.+|+|||||++.+.+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 799999989938899999997199
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.61 E-value=0.073 Score=25.00 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|.+|+|||||++-+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.56 E-value=0.065 Score=25.29 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++++|.+|+|||||++-+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.55 E-value=0.038 Score=26.81 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+++++|.+|+|||||++.+.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~ 30 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSEDA 30 (173)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999949999999997098
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.53 E-value=0.034 Score=27.06 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|++|+|||||++.+++..
T Consensus 6 i~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC---
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999908899999998498
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.52 E-value=0.057 Score=25.65 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|.+|+|||||++.+.+..
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989909899999998499
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.44 E-value=0.04 Score=26.62 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+++++|.+|+|||||++.+.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989909899999998499
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.44 E-value=0.048 Score=26.14 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|.+|+|||||++-+.+.
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.38 E-value=0.033 Score=27.16 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+++++|.+|+|||||++.+.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999908899999998498
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=91.37 E-value=0.055 Score=25.78 Aligned_cols=23 Identities=57% Similarity=0.875 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
..+.||+|+||||+.++++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.36 E-value=0.075 Score=24.92 Aligned_cols=23 Identities=48% Similarity=0.800 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
..+.||+|+|||++.++++.+..
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 68766998883089999998748
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.34 E-value=0.063 Score=25.38 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.32 E-value=0.043 Score=26.45 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=9.1
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 983799999589997981
Q 000872 3 LLLGPPGSGKTTLMLALA 20 (1245)
Q Consensus 3 aIlG~sGSGKSTLL~~L~ 20 (1245)
+|+||.|+|||||++.|.
T Consensus 21 ~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 21 SVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEECCGGGTHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHH
T ss_conf 999688886999999999
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.29 E-value=0.074 Score=24.94 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999995899979819
Q 000872 2 TLLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G 21 (1245)
.+++|.+|+|||||++-+.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999799698999999973
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.25 E-value=0.073 Score=25.00 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++++|.+|+|||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.25 E-value=0.09 Score=24.43 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999869999789999999699
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
-.+||+|-+.+|||||+++|++-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.24 E-value=0.054 Score=25.81 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999869999789999999699
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
=.++++|.+|+|||||++.+.+.
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.23 E-value=0.048 Score=26.14 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=20.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
+|.|.|++|+|||+++.-++-..-
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999991799998999999999998
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.17 E-value=0.067 Score=25.21 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++++|.+|+|||||++-+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.16 E-value=0.059 Score=25.55 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++++|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.05 E-value=0.051 Score=25.96 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|-|+.||||||+.+.|.-.+.
T Consensus 6 I~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989988899999999999998
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.02 E-value=0.084 Score=24.61 Aligned_cols=17 Identities=47% Similarity=0.733 Sum_probs=10.3
Q ss_pred EEECCCCCCHHHHHHHH
Q ss_conf 98379999958999798
Q 000872 3 LLLGPPGSGKTTLMLAL 19 (1245)
Q Consensus 3 aIlG~sGSGKSTLL~~L 19 (1245)
+++|.+|+|||||++-+
T Consensus 10 lllG~~~vGKTsll~~~ 26 (221)
T d1azta2 10 LLLGAGESGKSTIVKQM 26 (221)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
T ss_conf 99989999889999989
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.01 E-value=0.054 Score=25.79 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.++-|+.||||||+++.|.-.+.
T Consensus 5 IviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989988879999999999999
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.00 E-value=0.069 Score=25.16 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.00 E-value=0.089 Score=24.44 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999995899979819
Q 000872 2 TLLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G 21 (1245)
.+++|.+|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899588999999972
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=90.98 E-value=0.052 Score=25.93 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998699997899999996999
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
=.+.++|++|+|||||++.+.+..
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999987899999984488
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.94 E-value=0.086 Score=24.54 Aligned_cols=18 Identities=44% Similarity=0.689 Sum_probs=12.4
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 998379999958999798
Q 000872 2 TLLLGPPGSGKTTLMLAL 19 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L 19 (1245)
.+++|.+|+|||||++-+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999989999988
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.94 E-value=0.064 Score=25.33 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=18.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998379999958999798199
Q 000872 1 MTLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~ 22 (1245)
++.|.|++|||||++..-++..
T Consensus 39 ~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 39 ITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889988788999999999
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.92 E-value=0.059 Score=25.56 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|.+|+|||||++-+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999709
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.90 E-value=0.072 Score=25.01 Aligned_cols=19 Identities=37% Similarity=0.735 Sum_probs=10.7
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9983799999589997981
Q 000872 2 TLLLGPPGSGKTTLMLALA 20 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~ 20 (1245)
.+++|++|+|||||++-+.
T Consensus 9 i~vvG~~~vGKTsli~~~~ 27 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFK 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999929999999997
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.86 E-value=0.27 Score=21.42 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=19.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
+.+++||+|+||||.+-=|+.++.
T Consensus 8 vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 8 VVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999988999999999999
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.86 E-value=0.086 Score=24.52 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999995899979819
Q 000872 2 TLLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G 21 (1245)
.+|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999899999999964
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.85 E-value=0.073 Score=24.97 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
++.++|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.84 E-value=0.073 Score=25.00 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999986999978999999969
Q 000872 715 VLTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g 736 (1245)
-++.++|.+|+|||||++-+..
T Consensus 7 ~KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 7799998999988999998950
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.83 E-value=0.094 Score=24.28 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999978999999969
Q 000872 716 LTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g 736 (1245)
+++++|++|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.81 E-value=0.065 Score=25.31 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=16.2
Q ss_pred CEEEECCCCCCHHHHHHHHHC
Q ss_conf 999837999995899979819
Q 000872 1 MTLLLGPPGSGKTTLMLALAG 21 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G 21 (1245)
+.+|.|+.||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999889999999998
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.79 E-value=0.098 Score=24.18 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
++.++|.+|+|||||++-+.+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~ 26 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKR 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999997398
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.78 E-value=0.075 Score=24.90 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|.+|+|||||++-+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999859
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.75 E-value=0.08 Score=24.74 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHH---CCCC
Q ss_conf 9983799999589997981---9989
Q 000872 2 TLLLGPPGSGKTTLMLALA---GKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~---G~~~ 24 (1245)
.+|+||.|||||||...|+ |...
T Consensus 9 i~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 99995898998999999999648534
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=90.75 E-value=0.09 Score=24.43 Aligned_cols=23 Identities=57% Similarity=0.915 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
..+.||+|+|||++.++++.+..
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 88766898883599999998739
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.75 E-value=0.097 Score=24.20 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
++.++|.+|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=90.67 E-value=0.081 Score=24.71 Aligned_cols=21 Identities=52% Similarity=0.643 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999978999999969
Q 000872 716 LTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g 736 (1245)
-++|+|..|+|||||.+.|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999994889809999999999
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.65 E-value=0.071 Score=25.07 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+++|+|.+|+|||||++.+....
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~~ 33 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYANDA 33 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999989999999996499
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.53 E-value=0.08 Score=24.75 Aligned_cols=49 Identities=4% Similarity=0.059 Sum_probs=36.5
Q ss_pred HHCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 629976589489999-9999999999999998738988999915888899
Q 000872 843 VANPSIIFMDEPTSG-LDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDI 891 (1245)
Q Consensus 843 ~~~p~il~lDEptsg-lD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~~~i 891 (1245)
+.+..++++|+--.= -+...+..+..++....+.|+.+|+++..|..++
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHC
T ss_conf 76213010112655058657788999999987631663899548751001
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=90.52 E-value=0.063 Score=25.37 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHH
Q ss_conf 99837999995899979
Q 000872 2 TLLLGPPGSGKTTLMLA 18 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~ 18 (1245)
..|.|++||||||+|--
T Consensus 17 ~lI~g~aGTGKTt~l~~ 33 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITN 33 (306)
T ss_dssp EEECCCTTSCHHHHHHH
T ss_pred EEEEEECCCCHHHHHHH
T ss_conf 89996288438999999
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.49 E-value=0.07 Score=25.09 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=20.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
+|.+.||+||||||++..++....
T Consensus 56 itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 56 IVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 899805777478999999999987
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=90.42 E-value=0.043 Score=26.46 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=22.1
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9488499998699997899999996999
Q 000872 711 FRPGVLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 711 i~~G~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
-.|.-.+.+.||+|+|||.|-+.|++..
T Consensus 120 ~~~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 120 RYASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3688638887799850889999999986
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.41 E-value=0.084 Score=24.61 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998699997899999996
Q 000872 716 LTALMGVTGSGKTTLMDVLA 735 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~ 735 (1245)
++.++|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999899999899999884
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.33 E-value=0.1 Score=24.13 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
..+.||+|+||||+..+++.++.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.28 E-value=0.089 Score=24.44 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
++.++|.+|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.20 E-value=0.1 Score=24.09 Aligned_cols=23 Identities=48% Similarity=0.875 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
..+.||+|+||||++.+++.++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=90.09 E-value=0.069 Score=25.14 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=11.5
Q ss_pred EEEECCCCCCHHHHHH
Q ss_conf 9983799999589997
Q 000872 2 TLLLGPPGSGKTTLML 17 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~ 17 (1245)
+.|.|++||||||.|-
T Consensus 27 ~lV~g~aGSGKTt~l~ 42 (318)
T d1pjra1 27 LLIMAGAGSGKTRVLT 42 (318)
T ss_dssp EEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCHHHHHH
T ss_conf 8999529866899999
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=90.08 E-value=0.1 Score=24.13 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=4.4
Q ss_pred HHCCCCEEEEE
Q ss_conf 84497074552
Q 000872 159 LVGPAHALFMD 169 (1245)
Q Consensus 159 L~~~~~IllLD 169 (1245)
+..+.++++.|
T Consensus 75 ~~~g~~~iiiD 85 (433)
T d1e9ra_ 75 LLRGDRMVIVD 85 (433)
T ss_dssp HHTTCEEEEEE
T ss_pred HHCCCCEEEEE
T ss_conf 84799889996
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.00 E-value=0.085 Score=24.58 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|.+|+|||||++-+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999995989999999729
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.99 E-value=0.11 Score=23.83 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|.+|+|||||++-+.+..
T Consensus 6 vvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999969999999997199
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.91 E-value=0.076 Score=24.89 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|=|+-||||||+++.|.-.+.
T Consensus 5 IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989988859999999999873
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.91 E-value=0.087 Score=24.50 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+++++|.+|+|||||++-+.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.87 E-value=0.062 Score=25.46 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=18.7
Q ss_pred EEECCCCCCHHHHHHHHHCCCC
Q ss_conf 9837999995899979819989
Q 000872 3 LLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 3 aIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+.||+|+||||+++.++..+.
T Consensus 50 ~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 50 GSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp ECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
T ss_conf 9678999899999999999987
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.80 E-value=0.1 Score=24.06 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.+++|.+|+|||||++-+.+..
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999989989999999997098
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=89.75 E-value=0.17 Score=22.69 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=23.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4884999986999978999999969999
Q 000872 712 RPGVLTALMGVTGSGKTTLMDVLAGRKT 739 (1245)
Q Consensus 712 ~~G~~~ai~G~sGsGKsTLl~~L~g~~~ 739 (1245)
+.+-.++|+|.+.+|||||+|.|.|+..
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 7752789986675443555425426615
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.69 E-value=0.13 Score=23.31 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+++++|.+|+|||||++-+....
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999989989999999997098
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.48 E-value=0.18 Score=22.58 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=26.3
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 41799948849999869999789999999699
Q 000872 706 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 706 ~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
|.=..+-.|+..+|.|++|.|||+|+..++..
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 10256367887776679998989999999998
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.37 E-value=0.1 Score=24.03 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=24.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 99837999995899979819989999612599989914
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHD 39 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~~~~~~sG~V~inG~~ 39 (1245)
.+++||+|+|||.|.+.|+-.+. .--+.++...
T Consensus 55 ~lf~Gp~GvGKT~lak~la~~l~-----~~~i~~d~s~ 87 (315)
T d1r6bx3 55 FLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSE 87 (315)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGG
T ss_pred EEEECCCCCHHHHHHHHHHHHCC-----CCEEEECCCC
T ss_conf 99977875006999999986336-----7706741544
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.36 E-value=0.086 Score=24.53 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=20.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
+.++-|+-||||||+.+.|+-.+.
T Consensus 5 ~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 5 LILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989988869999999999997
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.33 E-value=0.13 Score=23.32 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
++.++|.+|+|||||++-+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.08 E-value=0.16 Score=22.83 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=20.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 884999986999978999999969
Q 000872 713 PGVLTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 713 ~G~~~ai~G~sGsGKsTLl~~L~g 736 (1245)
|-=-++++|..++|||||++.|..
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 971999994789849999999999
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.96 E-value=0.16 Score=22.76 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998699997899999996999
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
..++|=|.-||||||+++.|+...
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.91 E-value=0.12 Score=23.67 Aligned_cols=22 Identities=45% Similarity=0.720 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
..+.||+|+||||+..+++-++
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.90 E-value=0.13 Score=23.33 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699997899999996999
Q 000872 716 LTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
=..++|++|.|||++..-|+.+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHH
T ss_conf 96798889886779999999999
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=88.88 E-value=0.18 Score=22.45 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998379999958999798199899
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDS 25 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~~ 25 (1245)
.+|=|+-|+||||+++.|+..+..
T Consensus 9 I~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 9 IYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999888667899999999998656
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=88.85 E-value=0.12 Score=23.71 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=16.6
Q ss_pred CEEEEEECCCCCCHHHHHHH
Q ss_conf 84999986999978999999
Q 000872 714 GVLTALMGVTGSGKTTLMDV 733 (1245)
Q Consensus 714 G~~~ai~G~sGsGKsTLl~~ 733 (1245)
+..+.|.|+.|+||||++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHHH
T ss_conf 88599976898875216999
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.67 E-value=0.22 Score=21.97 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=22.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488499998699997899999996999
Q 000872 712 RPGVLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 712 ~~G~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+|.=-+||+|.-.+|||||++.|.+..
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 997089999724886999999997041
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.45 E-value=0.17 Score=22.62 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=29.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC-CCCCEEEEEEEECCEE
Q ss_conf 99948849999869999789999999699-9998057999997950
Q 000872 709 GAFRPGVLTALMGVTGSGKTTLMDVLAGR-KTRGYITGNITISGYP 753 (1245)
Q Consensus 709 ~~i~~G~~~ai~G~sGsGKsTLl~~L~g~-~~~~~~~G~i~~~g~~ 753 (1245)
+-+++|.++.+.|++|+||||+.-.++.. ...+ .-.+++|...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g--~~~vyIDtE~ 98 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG--GVAAFIDAEH 98 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC--CEEEEEECCC
T ss_conf 9866633699964887488999999999875489--8899998976
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.37 E-value=0.21 Score=22.08 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999869999789999999699
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.++||.|+-||||||..+.|...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=87.82 E-value=0.17 Score=22.62 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999995899979819989
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
.+|=|+-||||||+++.|+....
T Consensus 7 I~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 7 VYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEECSCTTSSHHHHHHHHTC---
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989867789999999999817
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.59 E-value=0.26 Score=21.47 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=25.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99948849999869999789999999699
Q 000872 709 GAFRPGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 709 ~~i~~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
|-++.|.++-+-|++|+|||||...++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98667547898058765227999999999
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.57 E-value=0.16 Score=22.87 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998699997899999996999
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
-++.|-|.-|||||||++-|....
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889986488899999999998567
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.40 E-value=0.21 Score=22.14 Aligned_cols=49 Identities=8% Similarity=0.132 Sum_probs=24.5
Q ss_pred HCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 449707455279868-37598999999999976615988999943898468
Q 000872 160 VGPAHALFMDEISTG-LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEV 209 (1245)
Q Consensus 160 ~~~~~IllLDEpTSg-LD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei 209 (1245)
+...+++++||.-.= -+...+..+++.+..... .++.++++...+..+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCCCHHC
T ss_conf 7621301011265505865778899999998763-1663899548751001
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=87.32 E-value=0.24 Score=21.72 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=20.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48849999869999789999999699
Q 000872 712 RPGVLTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 712 ~~G~~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
+|.-.+.++||+|+|||.+.+.|+..
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~ 76 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAAT 76 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87669999788862489999999998
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.89 E-value=0.25 Score=21.64 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998379999958999798199899
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDS 25 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~~ 25 (1245)
.+++|..|+|||||++-+.....|
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~ 28 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEA 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 999999998889999988408979
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.71 E-value=0.23 Score=21.82 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999958999798199
Q 000872 2 TLLLGPPGSGKTTLMLALAGK 22 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~ 22 (1245)
.+++|..|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999999679
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.67 E-value=0.23 Score=21.86 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCC-------CCCHHH-HHHHHHHHHHH---H-HCCCEEEEEECC
Q ss_conf 89999999999962997658948999-------999999-99999999998---7-389889999158
Q 000872 831 EQRKRLTIAVELVANPSIIFMDEPTS-------GLDARA-AAVVMRTVRNT---V-DTGRTVVCTIHQ 886 (1245)
Q Consensus 831 Gerkr~~ia~~l~~~p~il~lDEpts-------glD~~~-~~~i~~~l~~~---~-~~~~tvi~~~h~ 886 (1245)
+|++.-.+=.+ +.+|.|+|+||--+ +.++.. .+.+-+.|.++ . ..+.-||.++..
T Consensus 169 ~e~~~~~~f~~-a~~~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~ 235 (321)
T d1w44a_ 169 FNVFVDDIARA-MLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (321)
T ss_dssp HHHHHHHHHHH-HHHCSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHHHH-HHHCCEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 78999999999-86265897410122212345678987413345156652035566788499983797
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.12 E-value=0.21 Score=22.14 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
++.++|.+|+|||||+.-+...
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999999679
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.11 E-value=0.2 Score=22.25 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=18.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
+|.+.||+|+||||++..++....
T Consensus 62 i~e~~G~~~~GKT~l~l~~~~~~q 85 (269)
T d1mo6a1 62 VIEIYGPESSGKTTVALHAVANAQ 85 (269)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 699964887488999999999875
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.80 E-value=0.24 Score=21.75 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699997899999996999
Q 000872 717 TALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
..++|++|.|||++..-|+.+.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 3998358754479999999999
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=85.68 E-value=0.22 Score=21.97 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999589997981998
Q 000872 2 TLLLGPPGSGKTTLMLALAGKL 23 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~ 23 (1245)
.++-|+-||||||+.+.++..+
T Consensus 36 i~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9996687765889999987642
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.48 E-value=0.27 Score=21.43 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=26.5
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9765894899999999999999999998738988999915888
Q 000872 846 PSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 846 p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~ 888 (1245)
.+++++||.-. |+..+...+.+.+..-. .+..+|+++++++
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~ 156 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQ 156 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGG
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCCC-CCEEEEEECCCCC
T ss_conf 87999978110-89999999999985689-8869999738856
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=85.47 E-value=0.31 Score=20.98 Aligned_cols=26 Identities=38% Similarity=0.463 Sum_probs=18.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488499998699997899999996999
Q 000872 712 RPGVLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 712 ~~G~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
+|+. +..+||+|+|||-|-+.|+...
T Consensus 67 p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 67 SKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCC-EEEECCCCCCHHHHHHHHHHHC
T ss_conf 8753-2441899863789999998644
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.45 E-value=0.28 Score=21.28 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
.+.+.||+|+||||+...++..
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~ 47 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRY 47 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 7988899987599999999982
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.35 E-value=0.23 Score=21.85 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999789999999699
Q 000872 716 LTALMGVTGSGKTTLMDVLAGR 737 (1245)
Q Consensus 716 ~~ai~G~sGsGKsTLl~~L~g~ 737 (1245)
++.++|..|+|||||++-+...
T Consensus 4 KivllG~~~vGKTsl~~r~~~~ 25 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKII 25 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998889999988408
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=85.29 E-value=0.23 Score=21.86 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHC--CCEEEEECCCCCCCHHH---HHHHHHHHHHH-HHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 999999999629--97658948999999999---99999999998-738988999915888899998640
Q 000872 834 KRLTIAVELVAN--PSIIFMDEPTSGLDARA---AAVVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 834 kr~~ia~~l~~~--p~il~lDEptsglD~~~---~~~i~~~l~~~-~~~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
+...|..++... +-|||.||.-+=++..+ ....-+.|+-. ++..-.+|.++.. +-|..|.+
T Consensus 102 r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~---~ey~~~e~ 168 (387)
T d1qvra2 102 RLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTL---DEYREIEK 168 (387)
T ss_dssp HHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECH---HHHHHHTT
T ss_pred HHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCH---HHHHHHCC
T ss_conf 99999998505899669872408888427778774138999999973788516663689---99987633
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=85.09 E-value=0.29 Score=21.25 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=20.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 884999986999978999999969
Q 000872 713 PGVLTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 713 ~G~~~ai~G~sGsGKsTLl~~L~g 736 (1245)
|.=-+|++|.-++|||||++.|.+
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 971899995889809999999999
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=84.82 E-value=0.22 Score=22.00 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998379999958999798199899
Q 000872 2 TLLLGPPGSGKTTLMLALAGKLDS 25 (1245)
Q Consensus 2 taIlG~sGSGKSTLL~~L~G~~~~ 25 (1245)
.+|=|+-||||||+++.|.-.+..
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999888778899999999998734
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=84.45 E-value=0.24 Score=21.75 Aligned_cols=24 Identities=42% Similarity=0.675 Sum_probs=20.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999995899979819989
Q 000872 1 MTLLLGPPGSGKTTLMLALAGKLD 24 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G~~~ 24 (1245)
+|.+-||+||||||++..++....
T Consensus 59 itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 59 ITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 789805876522799999999997
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=84.24 E-value=0.24 Score=21.75 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=7.5
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 999869999789999
Q 000872 717 TALMGVTGSGKTTLM 731 (1245)
Q Consensus 717 ~ai~G~sGsGKsTLl 731 (1245)
+.|.|+.||||||.+
T Consensus 27 ~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 27 LLIMAGAGSGKTRVL 41 (318)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHH
T ss_conf 899952986689999
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=83.99 E-value=0.18 Score=22.50 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999986999978999999969999
Q 000872 715 VLTALMGVTGSGKTTLMDVLAGRKT 739 (1245)
Q Consensus 715 ~~~ai~G~sGsGKsTLl~~L~g~~~ 739 (1245)
.-+.+.|++|+|||||.+.+++..+
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7089988998529999999987379
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.54 E-value=0.28 Score=21.29 Aligned_cols=69 Identities=19% Similarity=0.370 Sum_probs=39.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC----------CCC
Q ss_conf 2368888867978999999999996299765894899999999999999999998738988999915----------888
Q 000872 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH----------QPS 888 (1245)
Q Consensus 819 ~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h----------~p~ 888 (1245)
++..||...+++.-..-+. +.+..+++. .+..|+-+.|...+-...+ .+..+++.+. .+.
T Consensus 100 liDtPGh~dF~~ev~~al~-----~~D~allVV-da~eGv~~qT~~~~~~a~~----~~~p~i~viNKiDr~~~el~~~~ 169 (341)
T d1n0ua2 100 LIDSPGHVDFSSEVTAALR-----VTDGALVVV-DTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRALLELQVSK 169 (341)
T ss_dssp EECCCCCCSSCHHHHHHHH-----TCSEEEEEE-ETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHHHHTSCCCH
T ss_pred EECCCCCHHHHHHHHHHHH-----HCCCEEEEE-ECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHH
T ss_conf 9737873889999998875-----237249998-6566820469999999987----69986999877265554277669
Q ss_pred HHHHHHHHH
Q ss_conf 899998640
Q 000872 889 IDIFEAFDA 897 (1245)
Q Consensus 889 ~~i~~~fd~ 897 (1245)
.++++.|.+
T Consensus 170 ~~~~~~l~~ 178 (341)
T d1n0ua2 170 EDLYQTFAR 178 (341)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHCC
T ss_conf 999999757
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.91 E-value=0.33 Score=20.88 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=25.5
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4179994884999986999978999999969
Q 000872 706 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAG 736 (1245)
Q Consensus 706 ~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g 736 (1245)
|.-..+-.|++.+|.|++|.|||+|+.-++.
T Consensus 60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred ECCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 4346766787787656888885899999997
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=81.47 E-value=0.43 Score=20.10 Aligned_cols=15 Identities=47% Similarity=0.813 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 998379999958999
Q 000872 2 TLLLGPPGSGKTTLM 16 (1245)
Q Consensus 2 taIlG~sGSGKSTLL 16 (1245)
++..|-||+|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (313)
T d2olra1 17 AVFFGLSGTGKTTLS 31 (313)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCCCCCE
T ss_conf 999704779856023
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=80.60 E-value=0.55 Score=19.46 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=23.6
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99488499998699997899999996999
Q 000872 710 AFRPGVLTALMGVTGSGKTTLMDVLAGRK 738 (1245)
Q Consensus 710 ~i~~G~~~ai~G~sGsGKsTLl~~L~g~~ 738 (1245)
..+.-.++.+.||.++|||+++++|....
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99761799998589887789999999983
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=80.40 E-value=0.45 Score=20.01 Aligned_cols=15 Identities=47% Similarity=0.813 Sum_probs=11.2
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 998379999958999
Q 000872 2 TLLLGPPGSGKTTLM 16 (1245)
Q Consensus 2 taIlG~sGSGKSTLL 16 (1245)
++..|-||+|||||-
T Consensus 17 alffGLSGTGKTTLs 31 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLS 31 (318)
T ss_dssp EEEEECTTSCHHHHT
T ss_pred EEEECCCCCCCCCCC
T ss_conf 999736879814221
|