Citrus Sinensis ID: 000873

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240-----

MAEDGLRIGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTSDQSESDFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGFGSSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKVDEKIE

ccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccEEEcccccccccEEEcccccEEEEcccEEEEEEcccccccEEEEEEEEEEcccEEEEEEccccccccccccccccccEEEcccccEEEcccccccccccccccEEEEEEEccccEEEEEEccEEcccccccccccccccEEEEEEEcccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHcccccccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEcccccccHHHHHHHHHccccccccHHHHHHHcccccccc

cccccccccccccccEEEEcccccccccccEEEEccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHccEEEEcccEEEcccccHHHHHHccccccEEEEcccccccEEEEcccEEEEEEEcEEEEEEEEEEEccEEEEEEEEEEcccEEEEEEccccccccccccccccccEEEccccEEEEcccccccccccccccEEEEEEEccccEEEEEEccccccHHHHHHHcccccccEEEEEEEcccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcEEEEccccHHHHHHHcccEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccEEccccEEEccccccccHHHHccHHHHHHHHccccHHHcHEEEEHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccHHEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccEEEEccccccHHHHHHHHHHcccccEEEEEEEEEEEEcccccc

maedglrigglsSGLALIlngddgkdnssksrfvsycddfghqSVEQTLEYIfglpnkslgpltcpvdnnlIRSIIKNdfskcylnsdavvanrdgigilengsgphivgleessicgdvriaKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSgvqqlgwatlscpftdhkgvgdaddsyafdgrrvkkwnkeaepygqswvaGDIIGCcidldsdeisfyrNGVSLGVAFSgirkmgpgfgyypavslsqgercvlnfgarpfkypincylplqesppvnVFATQLLQCLSRLLgmdkaersSVEKSRRLKRFVSLEKifnpvshgICEEFFSLLEADARIIEYVGWGILLSFMMEVFglqvphdysslDRVVDVFLQFQGSRSIFEHIIQALSCGCKtasmvltecpysgsypylaLACHILRREELMVLWWNSLDFEFIFEGflsrknpnrqdlqcmipsvwwpgscedisyessMMLTTTALSEAVSKIEEKHRELCLLVIQfippisppqfpgsvFRTFIQNILLknrgadrslpppgvssnsVLVSLYTVILHFLSEgfaigdtcswlkrsekngcnvgflhrggqqsfpiglflkndLLRADISRLggsfshllkshpvddqdaEVIRweegymddeetrvchlsehkpcccssydaefvrslkypvrnatkgsrghcssvpersahvaaecstgslndeiadkpstsdqsesdfgyhpvrHTMTVLRESNMSAATLKEEELLDALLLLYHIglapnfkqasyymshqsqSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVTFVVThfndprissaDLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALIsafdnrswipvTNILLRLCkghgfgsskhgessssSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCtheipqaflsgtdTNLRRLTELIVFILNHvtsaadaefFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLdasaesecgvqndvvgvfssmdcpdtihcgFQYLLEYnwagsfrgdtylsklgQLECFLSLVLCHIEAQEmertrcgretdaddgmccicyaseadaqfvpcshrschgcisrhlLNCLRCFFCNATVLEVVKVDEKIE

MAEDGLRIGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWnkeaepygqswvAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGmdkaerssveksrrlkrfvslekifnpvshGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSfshllkshpvddqdaEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTSDQSESDFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGfgsskhgesssSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIpqaflsgtdtNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKVDEKIE

MAEDglrigglssglalilngDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLViqfippisppqfpGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTSDQSESDFGYHPVRHTMTVLRESNMSaatlkeeelldallllYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCkghgfgsskhgesssssVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKVDEKIE

*************GLALIL************RFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGM*************LKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNR*************NSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVR*******************************************************MTVL********TLKEEELLDALLLLYHIGLAPNFKQASYYMS********************************NNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGF************VIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKV*****

******R***LSSGLALIL****************YCDDFGHQSVEQTLEYIFG******************RSIIKNDFSKCYLNSDAVVAN*D******NGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLL******************FVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSC*********MLTTTALSEAVSKIEEKHRELCLLVIQFIP*********SVFRTFIQNILLKNRGADR*LPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDA***************************CSSYDAEFVRSLKYPVRNATKG***************************************************************LKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEE********************RNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESN*****RLPKALISAFDNRSWIPVTNILLRLCKGHG****************QRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDA***********VVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVL**********************MCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKVD****

MAEDGLRIGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMD**********RRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVRN**********************CSTGSLNDEIAD**********DFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHG*************VIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKVDEKIE

*******IGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYP************************************************FGYHPV*HTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGFGSSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCG**TD*DDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKVD****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MAEDGLRIGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTSDQSESDFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRxxxxxxxxxxxxxxxxxxxxxVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGFGSSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKVDEKIE

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1245	2.2.26 [Sep-21-2011]
Q9SIZ8		1280	E3 ubiquitin-protein liga	yes	no	0.988	0.961	0.686	0.0
Q5XPI4		1314	E3 ubiquitin-protein liga	yes	no	0.841	0.797	0.260	2e-91
Q5XPI3		1314	E3 ubiquitin-protein liga	yes	no	0.844	0.800	0.255	2e-90
D3ZXK7		1318	E3 ubiquitin-protein liga	yes	no	0.265	0.251	0.335	3e-48
Q8BVR6		576	RING finger and SPRY doma	no	no	0.109	0.236	0.415	9e-22
Q5R881		576	RING finger and SPRY doma	no	no	0.109	0.236	0.408	2e-21
Q96DX4		576	RING finger and SPRY doma	no	no	0.109	0.236	0.408	3e-21
Q95LP3		576	RING finger and SPRY doma	N/A	no	0.109	0.236	0.408	3e-21
E9PZQ0		5035	Ryanodine receptor 1 OS=M	no	no	0.101	0.025	0.328	9e-14
P21817		5038	Ryanodine receptor 1 OS=H	no	no	0.112	0.027	0.303	2e-13

>sp\|Q9SIZ8\|RKP_ARATH E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana GN=RKP PE=2 SV=2	Back alignment and function desciption

 Score = 1791 bits (4638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 872/1271 (68%), Positives = 1034/1271 (81%), Gaps = 40/1271 (3%)

Query: 1    MAEDGLRIGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSL 60
            MAED LR+G +SSGLA++LNG+D K+NSSK+R V + D  GH+ +E+T+E+IFGL  KS+
Sbjct: 1    MAEDSLRVGMISSGLAVLLNGEDAKENSSKARIVPHFDYSGHRPLERTIEFIFGLAEKSV 60

Query: 61   GPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDV 120
            GPL   VD++LIR++IKN FSK + + D  V+ R+GI ++ +G GP IVGLEE SICGD+
Sbjct: 61   GPLDGQVDSSLIRAVIKNQFSKLHGDLDVSVSQREGISVVHHGVGPPIVGLEEFSICGDI 120

Query: 121  RIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGD 180
            RI K PL++ESLA+FSSARAN C+WKGKWMYEV LETSG+QQLGWATL+CPFTD KGVGD
Sbjct: 121  RIVKPPLVLESLALFSSARANACIWKGKWMYEVALETSGIQQLGWATLACPFTDQKGVGD 180

Query: 181  ADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIR 240
            ADDSYAFDGRRV KWNKEAEPYGQSWVAGD+IGCCIDL+ DEI FYRNGVSLG AF+GIR
Sbjct: 181  ADDSYAFDGRRVSKWNKEAEPYGQSWVAGDVIGCCIDLNCDEIYFYRNGVSLGAAFTGIR 240

Query: 241  KMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLL 300
            K+GPGFGYYPA+SLSQGERC LNFGA PFKYP++ + PLQE+P    FAT+LL+C SRLL
Sbjct: 241  KLGPGFGYYPAISLSQGERCELNFGAYPFKYPVDGFQPLQEAPTRFSFATELLRCFSRLL 300

Query: 301  GMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFM 360
              D+ +RS  +   RL+RF S+E++F PVS  IC+EFF +LE D  + EY+G G  LSF+
Sbjct: 301  --DRPDRSLADTLSRLRRFASVEELFCPVSSAICDEFFYILEQDPLLAEYLGRGAFLSFL 358

Query: 361  MEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYP 420
            +E F  Q PHD SSLD+V+DVFL+F  S  IFEH++ AL+CGCKTA+++LTECPYSG YP
Sbjct: 359  LETFRTQAPHDSSSLDKVLDVFLEFPQSHLIFEHVVNALACGCKTATLILTECPYSGPYP 418

Query: 421  YLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISY 480
            YLALACH+ +REELMV WW SL FEF+FEGFLS ++ N+ DLQ ++P VWWPGS EDISY
Sbjct: 419  YLALACHLFKREELMVQWWRSLHFEFLFEGFLSCRSSNKHDLQHLMPVVWWPGSSEDISY 478

Query: 481  ESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGA 540
            ESSM  T +ALSEA++KIEEK R LCLLVIQFIPP+SPPQ PGS FR F+QN+LLKNRGA
Sbjct: 479  ESSMGFTISALSEAINKIEEKQRNLCLLVIQFIPPVSPPQLPGSAFRGFLQNLLLKNRGA 538

Query: 541  DRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSF 600
            DR+L P GV+ NSVLVSL++VILHFLSEGFA+      LK SE    NVGFLHRGGQQ F
Sbjct: 539  DRTLAPSGVTRNSVLVSLFSVILHFLSEGFAM------LKSSEAVHHNVGFLHRGGQQKF 592

Query: 601  PIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHK 660
            P+ LFLKND  RADI+RLGG FSH+ KS+P DDQ+ E++RWEEG MDDE+ RV H +E K
Sbjct: 593  PLSLFLKNDPHRADITRLGGLFSHISKSYPTDDQEEEIMRWEEGCMDDEQNRVTHATEQK 652

Query: 661  PCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTS 720
            PCCC +YD +  +SLK   +N  + SRG CSS+PERS+HVAAECS GS ++EI DKPSTS
Sbjct: 653  PCCCLAYDTDLTKSLKDRGKNTAQSSRGRCSSIPERSSHVAAECSAGSFSEEIDDKPSTS 712

Query: 721  DQSESDFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQ 780
            +QS+ DFGY PVR   T L+ES +S+A L EEELLDALLLLYHI +APNFKQASYYMSHQ
Sbjct: 713  NQSDPDFGYRPVRFMRTALQESRISSAILSEEELLDALLLLYHIAVAPNFKQASYYMSHQ 772

Query: 781  SQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGM 840
            SQSISLLEETDKQIRERA  +Q+KRLKEARNNY+E+V+DCVRH AW+RISLFSRWKQRGM
Sbjct: 773  SQSISLLEETDKQIRERASCDQIKRLKEARNNYKEDVMDCVRHSAWFRISLFSRWKQRGM 832

Query: 841  YATCVWVVQLLLVLSKVDSVFIYIPEFYLEALV--------------------------- 873
            YA C+WVVQLLLVLSK+DSVF+YIPEFYLE+LV                           
Sbjct: 833  YALCMWVVQLLLVLSKMDSVFVYIPEFYLESLVDCFHVLRKSDPPFVPSTTFIKQGLSSF 892

Query: 874  -TFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNR 932
             TFVVTHFND RIS+ DL+DLLLQSISVLVQYK+YL AFE+NEAAT  +P AL++AFDNR
Sbjct: 893  ITFVVTHFNDSRISNTDLKDLLLQSISVLVQYKEYLEAFENNEAATRHMPAALLAAFDNR 952

Query: 933  SWIPVTNILLRLCKGHGFGSSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLS 992
            SWIPVTNI LRLCKG GF S K+GESS SS +FQ LLR+ACIND  L STFLNRLFNTLS
Sbjct: 953  SWIPVTNIFLRLCKGSGFSSLKNGESSFSSTVFQALLRDACINDGELLSTFLNRLFNTLS 1012

Query: 993  WTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNL 1052
            WT+TEFS+S+REMQEKYQV EFQQ+KCCVIF+LS NL RVLEFCT+ +PQAFL+GTDTNL
Sbjct: 1013 WTITEFSVSVREMQEKYQVMEFQQRKCCVIFELSSNLARVLEFCTYAMPQAFLAGTDTNL 1072

Query: 1053 RRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAES 1112
            RRLTELI+FILNH+TSA D EFFDLSLRR GQ  EKV+RG++LAPLVGIILNLL+AS +S
Sbjct: 1073 RRLTELILFILNHMTSAVDDEFFDLSLRRQGQPSEKVSRGILLAPLVGIILNLLEASEDS 1132

Query: 1113 ECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRG-DTYLSKLGQLECFLSLVLCH 1171
            +   Q+DV+G+F+SMDCPDT++ GFQYLLEYNW G   G D Y+ KLGQLE FLS ++  
Sbjct: 1133 KPKQQHDVIGLFASMDCPDTVYYGFQYLLEYNWDGCVSGDDAYVKKLGQLENFLSHLINR 1192

Query: 1172 IEAQEMERTR---CGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCF 1228
              +QE ER         TD +D  CCICYA EA+A   PCSHRSC+GCI+RHLLNC RCF
Sbjct: 1193 ASSQEPERKEESFNKDTTDIEDNTCCICYAGEANAMIAPCSHRSCYGCITRHLLNCQRCF 1252

Query: 1229 FCNATVLEVVK 1239
            FCNATV++V++
Sbjct: 1253 FCNATVIDVIR 1263

E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of KRP1 and KRP2.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q5XPI4\|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo sapiens GN=RNF123 PE=1 SV=1	Back alignment and function description

>sp\|Q5XPI3\|RN123_MOUSE E3 ubiquitin-protein ligase RNF123 OS=Mus musculus GN=Rnf123 PE=2 SV=1	Back alignment and function description

>sp\|D3ZXK7\|RN123_RAT E3 ubiquitin-protein ligase RNF123 OS=Rattus norvegicus GN=Rnf123 PE=1 SV=1	Back alignment and function description

>sp\|Q8BVR6\|RSPRY_MOUSE RING finger and SPRY domain-containing protein 1 OS=Mus musculus GN=Rspry1 PE=2 SV=1	Back alignment and function description

>sp\|Q5R881\|RSPRY_PONAB RING finger and SPRY domain-containing protein 1 OS=Pongo abelii GN=RSPRY1 PE=2 SV=1	Back alignment and function description

>sp\|Q96DX4\|RSPRY_HUMAN RING finger and SPRY domain-containing protein 1 OS=Homo sapiens GN=RSPRY1 PE=2 SV=1	Back alignment and function description

>sp\|Q95LP3\|RSPRY_MACFA RING finger and SPRY domain-containing protein 1 OS=Macaca fascicularis GN=RSPRY1 PE=2 SV=1	Back alignment and function description

>sp\|E9PZQ0\|RYR1_MOUSE Ryanodine receptor 1 OS=Mus musculus GN=Ryr1 PE=1 SV=1	Back alignment and function description

>sp\|P21817\|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens GN=RYR1 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1245
255575543		1348	protein binding protein, putative [Ricin	1.0	0.923	0.758	0.0
359480715		1276	PREDICTED: E3 ubiquitin-protein ligase R	0.997	0.973	0.756	0.0
296082494		1259	unnamed protein product [Vitis vinifera]	0.983	0.972	0.747	0.0
356516283		1269	PREDICTED: E3 ubiquitin-protein ligase R	0.992	0.973	0.729	0.0
356509046		1269	PREDICTED: E3 ubiquitin-protein ligase R	0.992	0.973	0.731	0.0
357464385		1301	RING finger and SPRY domain-containing p	0.990	0.947	0.686	0.0
449448406		1270	PREDICTED: E3 ubiquitin-protein ligase R	0.991	0.971	0.699	0.0
30681590		1280	ubiquitination-promoting complex protein	0.988	0.961	0.686	0.0
334184361		1283	ubiquitination-promoting complex protein	0.988	0.959	0.684	0.0
297825061		1276	zinc finger family protein [Arabidopsis	0.991	0.967	0.679	0.0

>gi\|255575543\|ref\|XP_002528672.1\| protein binding protein, putative [Ricinus communis] gi\|223531895\|gb\|EEF33711.1\| protein binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1974 bits (5113), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 970/1278 (75%), Positives = 1085/1278 (84%), Gaps = 33/1278 (2%)

Query: 1    MAEDGLRIGG-LSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKS 59
            MA+DG+R+GG +S+GLA+ILNG+DGK++SSK+R VSYCDDFG+Q VE+ LEY+FGLPNK 
Sbjct: 1    MADDGIRVGGGISAGLAVILNGEDGKESSSKTRLVSYCDDFGNQPVERALEYVFGLPNKL 60

Query: 60   LGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGD 119
            L PLT  VDNNL+RSIIKN+F K ++ SD + ++RDGI I +NG  PH VGLEE SICGD
Sbjct: 61   LSPLTASVDNNLVRSIIKNEFQKVHVKSDTLGSDRDGICIFDNGCRPHKVGLEELSICGD 120

Query: 120  VRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVG 179
            +RI K P ++ESLAMFSS RANVCVW+GKWMYEV L TSGVQQLGWAT+SCPFTDHKGVG
Sbjct: 121  IRIIKPPFVLESLAMFSSTRANVCVWEGKWMYEVILATSGVQQLGWATVSCPFTDHKGVG 180

Query: 180  DADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGI 239
            DADDSYAFDG+RV+KWNK+AEPYGQSWV GD+IGCCIDLD D+I FYRNGVSLGVAF GI
Sbjct: 181  DADDSYAFDGKRVRKWNKDAEPYGQSWVVGDVIGCCIDLDQDKILFYRNGVSLGVAFCGI 240

Query: 240  RKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRL 299
            RKMGPGFGY+PA+SLSQGERC LNFG RPFKYPI  +LPLQE P VN+ AT+LL+ LSRL
Sbjct: 241  RKMGPGFGYHPAISLSQGERCELNFGGRPFKYPIQGFLPLQEPPAVNLLATELLRALSRL 300

Query: 300  ---LGMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGIL 356
                 M++A+ S V K RRLKRFVSLE++F PV  GICEE F LLE+DA   EYV WG L
Sbjct: 301  SEMYCMERADSSIVGKFRRLKRFVSLEELFYPVCRGICEELFFLLESDAGRTEYVAWGPL 360

Query: 357  LSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYS 416
            LSFMME+F +Q PH YSSLDR +D+ L+FQ S  +FE +I ALSCGCKT S+VLTECPYS
Sbjct: 361  LSFMMEIFRVQPPHGYSSLDRFIDILLEFQESHLMFECVINALSCGCKTTSLVLTECPYS 420

Query: 417  GSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCE 476
            GSY YLALAC+ILRREELM LWW   DFEF+FEGFLS+K+ N+QDL C++PSVWWPGSCE
Sbjct: 421  GSYTYLALACYILRREELMGLWWKLPDFEFLFEGFLSQKSLNKQDLHCLMPSVWWPGSCE 480

Query: 477  DISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLK 536
            DISYESSM+LTTTALSEAVSKIEEKHR+LCLLVIQF+PP +PPQ PGSVFRTF+QN+LLK
Sbjct: 481  DISYESSMLLTTTALSEAVSKIEEKHRDLCLLVIQFVPPTTPPQLPGSVFRTFLQNLLLK 540

Query: 537  NRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGG 596
             RGADR++PPPGVSSNSVLVSLYTVILHFLSEGFA+ D C WLK  E N  +VGFLHRGG
Sbjct: 541  KRGADRNVPPPGVSSNSVLVSLYTVILHFLSEGFAMRDICGWLKSCETNNYDVGFLHRGG 600

Query: 597  QQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHL 656
            +QSFP+ LFLKND  R DISRLGGSFSHL KSHPV DQ+ E +RWEEG MDDEE RV H 
Sbjct: 601  EQSFPVDLFLKNDSYRTDISRLGGSFSHLSKSHPVYDQEVEAVRWEEGCMDDEEIRVTHK 660

Query: 657  SEHKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADK 716
            +  KPCCCSSYD E  +  K+  R  +KGSR HC+ +PERS HVAAECS GSLNDEIADK
Sbjct: 661  TIQKPCCCSSYDVELSKMSKHQTRYISKGSRVHCTPIPERSTHVAAECSAGSLNDEIADK 720

Query: 717  PSTSDQSESDFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYY 776
            PSTSDQSES+FGYHP+R    V RESNMS+ TL+EEELLD LLLLYHIG+APNFKQASYY
Sbjct: 721  PSTSDQSESEFGYHPMRDMRIVPRESNMSSDTLREEELLDTLLLLYHIGVAPNFKQASYY 780

Query: 777  MSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWK 836
            MSHQSQSISLL+ETDKQIRER CSEQL+RLKE RN+YREEVIDCVRHCAWYRISLFSRWK
Sbjct: 781  MSHQSQSISLLDETDKQIRERGCSEQLRRLKEVRNDYREEVIDCVRHCAWYRISLFSRWK 840

Query: 837  QRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEAL------------------------ 872
            QRGMYATC+W+VQL+LVLSKVDS+FIYIPEFYLE L                        
Sbjct: 841  QRGMYATCMWIVQLVLVLSKVDSLFIYIPEFYLETLVDCFHVLRKSDPPFVPPAIFIKQG 900

Query: 873  ----VTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISA 928
                VTFVV+HFNDPRI SADLRDLLLQSISVLVQYK+YLAAFESNEAA  R+PKAL+SA
Sbjct: 901  LASFVTFVVSHFNDPRILSADLRDLLLQSISVLVQYKEYLAAFESNEAAIQRMPKALLSA 960

Query: 929  FDNRSWIPVTNILLRLCKGHGFG-SSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRL 987
            FDNRSWIPVTNILLRLCKG  FG S     SSSSSV+FQ LLREACIND  LFS FLNRL
Sbjct: 961  FDNRSWIPVTNILLRLCKGSRFGSSKHGESSSSSSVVFQNLLREACINDGELFSAFLNRL 1020

Query: 988  FNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSG 1047
            FNTLSWTMTEFS+SIREMQEKYQV EFQQ+KCCVIFDLSCNL R+LEFCT EIPQAFLSG
Sbjct: 1021 FNTLSWTMTEFSVSIREMQEKYQVLEFQQRKCCVIFDLSCNLARLLEFCTREIPQAFLSG 1080

Query: 1048 TDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLD 1107
             DTNLRRLTELIVFIL+H+TSAAD+EFFDLSLRRHGQSLEKVNRGMILAPLVG+ILNLLD
Sbjct: 1081 ADTNLRRLTELIVFILSHITSAADSEFFDLSLRRHGQSLEKVNRGMILAPLVGVILNLLD 1140

Query: 1108 ASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSL 1167
            AS E ECG QNDVVGVF+SMDCPDT+HCGFQYLLEYNW  SFRG+ YL KL QLE FLSL
Sbjct: 1141 ASVEMECGEQNDVVGVFASMDCPDTMHCGFQYLLEYNWVRSFRGEAYLGKLVQLENFLSL 1200

Query: 1168 VLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRC 1227
            ++  IE ++ E  RCG ETD DD +CCICY  EADAQF PCSHRSC+GCI+RHLLNC RC
Sbjct: 1201 LVSRIELEQTEMMRCGGETDGDDSICCICYTCEADAQFAPCSHRSCYGCITRHLLNCHRC 1260

Query: 1228 FFCNATVLEVVKVDEKIE 1245
            FFCNATVLEV+K+ E +E
Sbjct: 1261 FFCNATVLEVIKLREPME 1278

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359480715\|ref\|XP_002276278.2\| PREDICTED: E3 ubiquitin-protein ligase RKP-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296082494\|emb\|CBI21499.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356516283\|ref\|XP_003526825.1\| PREDICTED: E3 ubiquitin-protein ligase RKP-like [Glycine max]	Back alignment and taxonomy information

>gi\|356509046\|ref\|XP_003523263.1\| PREDICTED: E3 ubiquitin-protein ligase RKP-like [Glycine max]	Back alignment and taxonomy information

>gi\|357464385\|ref\|XP_003602474.1\| RING finger and SPRY domain-containing protein [Medicago truncatula] gi\|355491522\|gb\|AES72725.1\| RING finger and SPRY domain-containing protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449448406\|ref\|XP_004141957.1\| PREDICTED: E3 ubiquitin-protein ligase RKP-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|30681590\|ref\|NP_850020.1\| ubiquitination-promoting complex protein 1 [Arabidopsis thaliana] gi\|300681232\|sp\|Q9SIZ8.2\|RKP_ARATH RecName: Full=E3 ubiquitin-protein ligase RKP; Short=AtKPC1; AltName: Full=Protein RELATED TO KPC1 gi\|330252157\|gb\|AEC07251.1\| ubiquitination-promoting complex protein 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|334184361\|ref\|NP_001189573.1\| ubiquitination-promoting complex protein 1 [Arabidopsis thaliana] gi\|330252158\|gb\|AEC07252.1\| ubiquitination-promoting complex protein 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297825061\|ref\|XP_002880413.1\| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi\|297326252\|gb\|EFH56672.1\| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1245
UNIPROTKB\|F1LMI7		1312	Rnf123 "E3 ubiquitin-protein l	0.300	0.285	0.326	4.5e-81
RGD\|2301394		1318	Rnf123 "ring finger protein 12	0.300	0.283	0.326	4.7e-81
MGI\|MGI:2148796		1314	Rnf123 "ring finger protein 12	0.294	0.279	0.332	8.3e-81
UNIPROTKB\|Q5XPI4		1314	RNF123 "E3 ubiquitin-protein l	0.309	0.292	0.337	1e-80
UNIPROTKB\|E2R3P7		1314	RNF123 "Uncharacterized protei	0.292	0.277	0.347	5.5e-80
UNIPROTKB\|E1BL26		1313	RNF123 "Uncharacterized protei	0.293	0.278	0.337	9.1e-80
UNIPROTKB\|F1SPR6		1314	RNF123 "Uncharacterized protei	0.295	0.280	0.333	1.2e-78
UNIPROTKB\|E1C5W8		1309	RNF123 "Uncharacterized protei	0.294	0.280	0.351	1.5e-78
FB\|FBgn0038296		1332	CG6752 [Drosophila melanogaste	0.235	0.219	0.332	2e-62
ZFIN\|ZDB-GENE-050208-529		789	rnf123 "ring finger protein 12	0.212	0.335	0.341	1.8e-32

UNIPROTKB\|F1LMI7 Rnf123 "E3 ubiquitin-protein ligase RNF123" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

 Score = 514 (186.0 bits), Expect = 4.5e-81, Sum P(5) = 4.5e-81
 Identities = 128/392 (32%), Positives = 200/392 (51%)

Query:    91 VANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLL-VESLAMFSSARANVCVWKGKW 149
             V + +  G +E   GP  V L+ +     + +    LL V   + F + R++ CV+KGKW
Sbjct:    74 VDDEESQGQVEGRLGPSTVVLDHTGGFEGLLLVDDDLLGVIGHSNFGTIRSSTCVYKGKW 133

Query:   150 MYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAG 209
             +YEV + + G+ Q+GW T++C F   +GVGD  +SYA+DG RV+KWN     YG++W AG
Sbjct:   134 VYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAG 193

Query:   210 DIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPF 269
             DI+ C IDLD   +SF  NGVSLG AF  + + G G  Y+PA+SLS  E    NFG+RP 
Sbjct:   194 DIVSCLIDLDDGTLSFCLNGVSLGTAFENLSR-GLGMAYFPAISLSFKESVAFNFGSRPL 252

Query:   270 KYPINCYLPLQESPPVN-VFATQLLQCLSRLLG--MDKAERSSVEKSRRLKRFVSLEKIF 326
             +YP+  + PLQ+ P  + V A +LL C   +L   +D  E   VEK     +      + 
Sbjct:   253 RYPVAGFRPLQDPPFADLVRAQRLLGCFQTVLSVELDPVEGRLVEKESSEWQLHGQPTVL 312

Query:   327 NPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSL-DRVVDVFLQF 385
               ++H I   F  LL     ++E     +L+SF++ +     P    S+  +++D+   F
Sbjct:   313 LTLAH-IFHHFAPLLRK-VYLVE----AVLMSFLLGIVEKGTPEQAQSVVHQILDLLWLF 366

Query:   386 QGSRSIFEHIIQALSCGCKTASMVLTECPYSG-SYPYLALACHILRREELMVLWWNSLDF 444
                  + +  ++ L              P  G    YL L   +LR E+      +++ F
Sbjct:   367 MEDYEV-QDCLKQLMMSLLRLYRFSPIVPDLGLQIHYLRLTMAVLRHEKSRKFLLSNVLF 425

Query:   445 EFIFEG-FLSRKNPNRQD---LQCMIPSVWWP 472
             + +    F   K+P R +   L+ +IP+ WWP
Sbjct:   426 DMLRSVVFFYIKSPLRVEEAGLKELIPTTWWP 457

GO:0008270 "zinc ion binding" evidence=IEA

RGD\|2301394 Rnf123 "ring finger protein 123" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:2148796 Rnf123 "ring finger protein 123" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5XPI4 RNF123 "E3 ubiquitin-protein ligase RNF123" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R3P7 RNF123 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BL26 RNF123 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SPR6 RNF123 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C5W8 RNF123 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

FB\|FBgn0038296 CG6752 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050208-529 rnf123 "ring finger protein 123" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SIZ8	RKP_ARATH	6, ., 3, ., 2, ., -	0.6860	0.9887	0.9617	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019405001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1276 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1245
cd12882		128	cd12882, SPRY_RNF123, SPRY domain at N-terminus of	6e-80
cd11709		118	cd11709, SPRY, SPRY domain	1e-36
smart00449		122	smart00449, SPRY, Domain in SPla and the RYanodine	2e-33
pfam00622		125	pfam00622, SPRY, SPRY domain	5e-32
cd12878		133	cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryano	2e-28
cd12872		149	cd12872, SPRY_Ash2, SPRY domain in Ash2	5e-26
cd12873		155	cd12873, SPRY_DDX1, SPRY domain associated with DE	9e-26
cd12883		121	cd12883, SPRY_RING, SPRY domain at N-terminus of R	2e-25
cd12884		176	cd12884, SPRY_hnRNP, SPRY domain in heterogeneous	4e-22
cd12885		132	cd12885, SPRY_RanBP_like, SPRY domain in Ran bindi	8e-17
cd12877		151	cd12877, SPRY1_RyR, SPRY domain 1 (SPRY1) of ryano	3e-14
cd12886		128	cd12886, SPRY_like, SPRY domain-like in bacteria	1e-13
cd12909		153	cd12909, SPRY_RanBP9_10, SPRY domain in Ran bindin	2e-13
pfam13920		49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	8e-07
cd12876		187	cd12876, SPRY_SOCS3, SPRY domain in the suppressor	2e-06
pfam13923		45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	9e-06
pfam13639		46	pfam13639, zf-RING_2, Ring finger domain	1e-04
cd12906		174	cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppre	0.001
cd00162		45	cd00162, RING, RING-finger (Really Interesting New	0.003

>gnl\|CDD\|240462 cd12882, SPRY_RNF123, SPRY domain at N-terminus of ring finger protein 123	Back alignment and domain information

 Score =  257 bits (659), Expect = 6e-80
 Identities = 87/129 (67%), Positives = 100/129 (77%), Gaps = 1/129 (0%)

Query: 137 SARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWN 196
           S RAN CV+KGKWMYEVTL T G+ Q+GWAT+SC FT  +GVGD  DSYA+DG RV+KWN
Sbjct: 1   SIRANACVYKGKWMYEVTLGTKGIMQIGWATISCRFTQEEGVGDTPDSYAYDGNRVRKWN 60

Query: 197 KEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQ 256
              + YG+ WVAGD+IGCCIDLD   ISFYRNG SLGVAF  +R+ GPG  Y+PAVSLS 
Sbjct: 61  VSTQKYGEPWVAGDVIGCCIDLDEGTISFYRNGRSLGVAFDNVRR-GPGLAYFPAVSLSF 119

Query: 257 GERCVLNFG 265
           GE   LNFG
Sbjct: 120 GESVELNFG 128

This SPRY domain is found at the N-terminus of RING finger protein 123 domain (also known as E3 ubiquitin-protein ligase RNF123). The ring finger domain motif is present in a variety of functionally distinct proteins and known to be involved in protein-protein and protein-DNA interactions. RNF123 displays E3 ubiquitin ligase activity toward the cyclin-dependent kinase inhibitor p27 (Kip1). Length = 128

>gnl\|CDD\|240451 cd11709, SPRY, SPRY domain	Back alignment and domain information

>gnl\|CDD\|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor	Back alignment and domain information

>gnl\|CDD\|216029 pfam00622, SPRY, SPRY domain	Back alignment and domain information

>gnl\|CDD\|240458 cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)	Back alignment and domain information

>gnl\|CDD\|240452 cd12872, SPRY_Ash2, SPRY domain in Ash2	Back alignment and domain information

>gnl\|CDD\|240453 cd12873, SPRY_DDX1, SPRY domain associated with DEAD box gene DDX1	Back alignment and domain information

>gnl\|CDD\|240463 cd12883, SPRY_RING, SPRY domain at N-terminus of Really Interesting New Gene (RING) finger domain	Back alignment and domain information

>gnl\|CDD\|240464 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1	Back alignment and domain information

>gnl\|CDD\|240465 cd12885, SPRY_RanBP_like, SPRY domain in Ran binding proteins, SSH4, HECT E3 and SPRYD3	Back alignment and domain information

>gnl\|CDD\|240457 cd12877, SPRY1_RyR, SPRY domain 1 (SPRY1) of ryanodine receptor (RyR)	Back alignment and domain information

>gnl\|CDD\|240466 cd12886, SPRY_like, SPRY domain-like in bacteria	Back alignment and domain information

>gnl\|CDD\|240489 cd12909, SPRY_RanBP9_10, SPRY domain in Ran binding proteins 9 and 10	Back alignment and domain information

>gnl\|CDD\|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)	Back alignment and domain information

>gnl\|CDD\|240456 cd12876, SPRY_SOCS3, SPRY domain in the suppressor of cytokine signaling 3 (SOCS3) family	Back alignment and domain information

>gnl\|CDD\|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)	Back alignment and domain information

>gnl\|CDD\|222279 pfam13639, zf-RING_2, Ring finger domain	Back alignment and domain information

>gnl\|CDD\|240486 cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppressor of cytokine signaling 1, 2, 4 families (SOCS1, SOCS2, SOCS4)	Back alignment and domain information

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1245
KOG4692		489	consensus Predicted E3 ubiquitin ligase [Posttrans	100.0
COG5113		929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	100.0
PF10408		629	Ufd2P_core: Ubiquitin elongating factor core; Inte	100.0
KOG2042		943	consensus Ubiquitin fusion degradation protein-2 [	100.0
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	99.97
KOG2626		544	consensus Histone H3 (Lys4) methyltransferase comp	99.94
smart00449		122	SPRY Domain in SPla and the RYanodine Receptor. Do	99.85
PF00622		124	SPRY: SPRY domain; InterPro: IPR003877 The SPRY do	99.85
KOG4030		197	consensus Uncharacterized conserved protein, conta	99.68
KOG2243		5019	consensus Ca2+ release channel (ryanodine receptor	99.66
KOG2242		558	consensus Scaffold/matrix specific factor hnRNP-U/	99.59
KOG3953		242	consensus SOCS box protein SSB-1, contains SPRY do	99.47
KOG4367		699	consensus Predicted Zn-finger protein [Function un	99.44
KOG2243		5019	consensus Ca2+ release channel (ryanodine receptor	99.25
PF13920		50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.97
PLN03208		193	E3 ubiquitin-protein ligase RMA2; Provisional	98.94
PF04564		73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.89
smart00504		63	Ubox Modified RING finger domain. Modified RING fi	98.85
PF15227		42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.78
KOG0823		230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.7
KOG1477		469	consensus SPRY domain-containing proteins [General	98.69
PF13923		39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.65
PHA02929		238	N1R/p28-like protein; Provisional	98.59
KOG0317		293	consensus Predicted E3 ubiquitin ligase, integral	98.58
PF13639		44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.47
KOG4172		62	consensus Predicted E3 ubiquitin ligase [Posttrans	98.47
TIGR00599		397	rad18 DNA repair protein rad18. This family is bas	98.43
PF00097		41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.24
PHA02926		242	zinc finger-like protein; Provisional	98.23
KOG0320		187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.21
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	98.17
COG5432		391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.14
KOG0287		442	consensus Postreplication repair protein RAD18 [Re	98.12
smart00184		39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.05
PF14634		44	zf-RING_5: zinc-RING finger domain	98.0
KOG4265		349	consensus Predicted E3 ubiquitin ligase [Posttrans	98.0
PF13445		43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.99
KOG2177		386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.98
COG5243		491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.97
COG5574		271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.93
KOG4275		350	consensus Predicted E3 ubiquitin ligase [Posttrans	97.83
KOG2164		513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.82
KOG0824		324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.77
PF12678		73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.77
PF14835		65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.68
KOG1477		469	consensus SPRY domain-containing proteins [General	97.62
KOG0802		543	consensus E3 ubiquitin ligase [Posttranslational m	97.57
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	97.54
KOG4159		398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.51
KOG4628		348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.25
KOG0311		381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.22
KOG1785		563	consensus Tyrosine kinase negative regulator CBL [	97.19
COG5540		374	RING-finger-containing ubiquitin ligase [Posttrans	97.14
KOG1571		355	consensus Predicted E3 ubiquitin ligase [Posttrans	97.11
KOG2660		331	consensus Locus-specific chromosome binding protei	96.92
KOG2879		298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.9
PF12861		85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	96.74
KOG1039		344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.67
COG5222		427	Uncharacterized conserved protein, contains RING Z	96.47
KOG0297		391	consensus TNF receptor-associated factor [Signal t	96.37
COG5236		493	Uncharacterized conserved protein, contains RING Z	96.08
PF11789		57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.07
TIGR00570		309	cdk7 CDK-activating kinase assembly factor MAT1. A	95.99
PF14447		55	Prok-RING_4: Prokaryotic RING finger family 4	95.61
KOG1813		313	consensus Predicted E3 ubiquitin ligase [Posttrans	95.25
KOG2242		558	consensus Scaffold/matrix specific factor hnRNP-U/	95.18
COG5152		259	Uncharacterized conserved protein, contains RING a	95.07
KOG1734		328	consensus Predicted RING-containing E3 ubiquitin l	94.85
KOG0825		1134	consensus PHD Zn-finger protein [General function	94.72
PF04641		260	Rtf2: Rtf2 RING-finger	94.63
KOG1002		791	consensus Nucleotide excision repair protein RAD16	94.26
PF14570		48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.05
KOG0828		636	consensus Predicted E3 ubiquitin ligase [Posttrans	93.86
KOG3039		303	consensus Uncharacterized conserved protein [Funct	93.6
KOG1001		674	consensus Helicase-like transcription factor HLTF/	93.41
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	93.36
COG5219		1525	Uncharacterized conserved protein, contains RING Z	92.92
PF11793		70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	92.55
PF05883		134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	92.03
COG5194		88	APC11 Component of SCF ubiquitin ligase and anapha	91.5
smart00744		49	RINGv The RING-variant domain is a C4HC3 zinc-fing	91.22
KOG0826		357	consensus Predicted E3 ubiquitin ligase involved i	90.75
KOG1814		445	consensus Predicted E3 ubiquitin ligase [Posttrans	90.66
COG5175		480	MOT2 Transcriptional repressor [Transcription]	90.12
KOG1100		207	consensus Predicted E3 ubiquitin ligase [Posttrans	90.07
KOG2932		389	consensus E3 ubiquitin ligase involved in ubiquiti	89.9
KOG2817		394	consensus Predicted E3 ubiquitin ligase [Posttrans	89.41
KOG3002		299	consensus Zn finger protein [General function pred	85.73
KOG3161		861	consensus Predicted E3 ubiquitin ligase [Posttrans	84.57
KOG4185		296	consensus Predicted E3 ubiquitin ligase [Posttrans	83.05
PF05290		140	Baculo_IE-1: Baculovirus immediate-early protein (	83.04
PF10367		109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	82.47
PF13765		49	PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2V	81.46

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=6.1e-78  Score=656.22  Aligned_cols=387  Identities=44%  Similarity=0.746  Sum_probs=345.0

Q ss_pred             HHHHHH----hhccCCCCCccccchHHHHHH------------------------------HHHHHhhhccCCcccChhh
Q 000873          845 VWVVQL----LLVLSKVDSVFIYIPEFYLEA------------------------------LVTFVVTHFNDPRISSADL  890 (1245)
Q Consensus       845 ~WLlrl----~~~~s~~~~~F~~lPEfylE~------------------------------iv~Fl~~~~~~p~I~~~~~  890 (1245)
                      +||++.    +..+++++++|+|+||+|+.+                              .++||..|++||||+.+++
T Consensus         2 ~wll~~~lrtl~~~~~tgslfsfvpe~yvn~~~~~~~av~d~~~~l~a~~e~~~~e~sv~~~a~~l~~h~ad~riv~a~~   81 (489)
T KOG4692|consen    2 IWLLERMLRTLTTASNTGSLFSFVPEVYVNTLPILLDAVMDFSHDLKAQFEASDAECSVNAAAEFLGIHSADPRIVLASC   81 (489)
T ss_pred             hHHHHHHHHHhhccCCCcchhhhchHHHHHhhHHHHHHHHHhCcchhhhhcCCCchhhHHHHHHHHhhccCCceeeechh
Confidence            488775    456899999999999999998                              7899999999999999999


Q ss_pred             HHHHHHHHHHHhcChhhHHHhhcC-HHHHHhhHHHhhccccCCCcccchhHHhhhccccCCccCcCCC------------
Q 000873          891 RDLLLQSISVLVQYKDYLAAFESN-EAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGFGSSKHGE------------  957 (1245)
Q Consensus       891 ~d~lvq~l~~~l~~~~~i~~fe~n-~~~~~~Lv~aLl~~y~~R~wi~~~~iLlrl~~g~gFa~rk~~~------------  957 (1245)
                      ||.|+|++.+++|+|..++++|+. +..|+.||++||++|+||.|||+||||+|+|+|+||+|++++.            
T Consensus        82 kdsllqal~t~~c~~~~vraler~~k~sq~smvraLLapyenR~W~q~nwillRlw~G~Gf~y~~~r~phl~rsr~~n~~  161 (489)
T KOG4692|consen   82 KDSLLQALGTLTCHKSGVRALERTSKRSQASMVRALLAPYENRSWIQVNWILLRLWKGSGFSYLKNREPHLCRSRSRNET  161 (489)
T ss_pred             HHHHHHHhhheeechhhhhHHHhccHhhHHHHHHHHhhhhhcCCchhhhHHHHHHHccCCccccccCCchhhhhhhcccc
Confidence            999999999999999999999999 6899999999999999999999999999999999999985542            


Q ss_pred             -----CCCCcHHHHHHHHHHHHhCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhH------HHhhhhhhHHHhH
Q 000873          958 -----SSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSE------FQQKKCCVIFDLS 1026 (1245)
Q Consensus       958 -----~~~~s~~~q~~l~~~~~~n~~fF~rFlN~LlNDl~~lldEfl~~l~eIq~~~~~~e------~qqr~c~s~f~Ls 1026 (1245)
                           ..|||++||++++..+.+|+++...|+|++||++||+|+||+.++||||++.|..|      +|+|+|.+||+|+
T Consensus       162 ~~sl~~p~pst~fQ~ll~a~ll~dgp~a~tFLNsvlnqLnWafsEFi~~vqEiQ~~aqr~E~~~~e~~Qlk~C~~cFeLs  241 (489)
T KOG4692|consen  162 HTSLSSPAPSTVFQALLRAALLNDGPLASTFLNSVLNQLNWAFSEFIVSVQEIQEKAQRMENTLFEPFQLKKCCVCFELS  241 (489)
T ss_pred             cccccCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccCHHHHhHhhhhHHHH
Confidence                 35699999999999999999999999999999999999999999999999877655      8899999999999


Q ss_pred             HHHHHHHHHHhhhcccccCCC----hhhHHHHHHHHHHHHHhhhcCCcccccchhccccccCCccccCchhhhhhHHHHH
Q 000873         1027 CNLTRVLEFCTHEIPQAFLSG----TDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGII 1102 (1245)
Q Consensus      1027 ~~t~r~Le~~T~~ip~~F~~p----~~~iv~RLa~MLnynL~~l~~~~~~~~~~~~lk~~~~~~ek~~~~~lL~~i~gIy 1102 (1245)
                      ++++|+|||.++.+|++|++.    ++.+++||+++||++|++++.++  ++|+..|+..+|++|||+|++||++++||+
T Consensus       242 vsL~RvLEm~it~~Peifld~trpns~~Ll~ri~qllnqvlsrVt~e~--~lf~rvv~~~~~~le~V~hypil~a~~GIl  319 (489)
T KOG4692|consen  242 VSLARVLEMCITAMPEIFLDGTRPNSRRLLERILQLLNQVLSRVTDEF--FLFVRVVRRQGQPLEKVSHYPILAALVGIL  319 (489)
T ss_pred             HHHHHHHHHHHHhhhHHHhcCCCCcHHHHHHHHHHHHHHHHHhhcccc--chhHHHHHhhcCChhhhcccchHHHHHHHH
Confidence            999999999999999999964    68899999999999999999876  488888999999999999999999999999


Q ss_pred             HHhcccccccccCcccceeeeeeccCCCchhhhhHHHHHhhccc---------------cC-----cCCCCCHHHHHHHH
Q 000873         1103 LNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWA---------------GS-----FRGDTYLSKLGQLE 1162 (1245)
Q Consensus      1103 LnL~~~~~f~~~~~~~~~~~avas~D~~sf~~~~f~~l~~i~~~---------------~~-----~~~~~~~~~i~~l~ 1162 (1245)
                      |||+..+...+.+.+.+++..+|+.|+|+|+..+|+|+++++|.               ++     +.+.++..++.+++
T Consensus       320 l~Ll~~~~~S~~r~Q~~~~~~~a~l~dP~fq~~~~~ylLg~~~pdpp~p~t~~~p~pd~krfal~~~~~~~s~~e~~~V~  399 (489)
T KOG4692|consen  320 LNLLEASEDSKPRQQHDVIGLFASLDDPDFQYYGFQYLLGYNWPDPPDPLTDGCPSPDDKRFALVKKLGQLSNFESHLVN  399 (489)
T ss_pred             HHHHHhCcccCcccchhhhhhheeccCcchHHHHHHHHHhcCCCCCCCccccCCCCCCccchHHhhhhhhhhHHHHHHHH
Confidence            99999998887777766655666678899999999999999874               11     23455667777777


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCCccCccccccccCcEEeCCCCcccHHHHHHhhcCCCCCCCCcccccccc
Q 000873         1163 CFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVV 1238 (1245)
Q Consensus      1163 ~~~~~l~~~~~~~e~e~~~~~~~~~~de~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~~v~ 1238 (1245)
                      ++.+.+.+++.+....    + -.+.+|.+|||||.-+.++|+.||||..|+.||.+|++|++.|+||++++.+|+
T Consensus       400 r~~~~l~~~~~~~~~~----~-lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~~  470 (489)
T KOG4692|consen  400 RASSQLPERKEESFNK----D-LPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDVI  470 (489)
T ss_pred             HHHhhcchhhHHhhcC----C-CCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeehh
Confidence            7777777665543322    2 223578999999999999999999999999999999999999999999998854

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38	Back alignment and domain information

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>smart00449 SPRY Domain in SPla and the RYanodine Receptor	Back alignment and domain information

>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function	Back alignment and domain information

>KOG4030 consensus Uncharacterized conserved protein, contains SPRY domain [Function unknown]	Back alignment and domain information

>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]	Back alignment and domain information

>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification]	Back alignment and domain information

>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]	Back alignment and domain information

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]	Back alignment and domain information

>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]	Back alignment and domain information

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A	Back alignment and domain information

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional	Back alignment and domain information

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis	Back alignment and domain information

>smart00504 Ubox Modified RING finger domain	Back alignment and domain information

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A	Back alignment and domain information

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]	Back alignment and domain information

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A	Back alignment and domain information

>PHA02929 N1R/p28-like protein; Provisional	Back alignment and domain information

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A	Back alignment and domain information

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00599 rad18 DNA repair protein rad18	Back alignment and domain information

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PHA02926 zinc finger-like protein; Provisional	Back alignment and domain information

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]	Back alignment and domain information

>smart00184 RING Ring finger	Back alignment and domain information

>PF14634 zf-RING_5: zinc-RING finger domain	Back alignment and domain information

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A	Back alignment and domain information

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B	Back alignment and domain information

>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]	Back alignment and domain information

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]	Back alignment and domain information

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]	Back alignment and domain information

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger	Back alignment and domain information

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]	Back alignment and domain information

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C	Back alignment and domain information

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1	Back alignment and domain information

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4	Back alignment and domain information

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification]	Back alignment and domain information

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]	Back alignment and domain information

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>PF04641 Rtf2: Rtf2 RING-finger	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B	Back alignment and domain information

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A	Back alignment and domain information

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length	Back alignment and domain information

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]	Back alignment and domain information

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins	Back alignment and domain information

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5175 MOT2 Transcriptional repressor [Transcription]	Back alignment and domain information

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3002 consensus Zn finger protein [General function prediction only]	Back alignment and domain information

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0	Back alignment and domain information

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1	Back alignment and domain information

>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1245
3toj_A		213	Structure Of The Spry Domain Of Human Ash2l Length		7e-09

>pdb|3TOJ|A Chain A, Structure Of The Spry Domain Of Human Ash2l Length = 213

Back alignment and structure

Iteration: 1

Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 31/181 (17%) Query: 120 VRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLE---TSGVQQLGWA----TLSCPF 172 ++I+ L V +S RA+ V KG W +E+T++ +LGW+ L P Sbjct: 24 LKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAP- 82 Query: 173 TDHKGVGDADDSYAFDGRRVKKWNKE-AEPYGQSWVAGDIIGCCIDLDSDEIS------- 224 +G SY++ ++ K+++ + Y + GD++G I+L D IS Sbjct: 83 -----LGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEI 137 Query: 225 -FYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARP-FKYPIN--CYLPLQ 280 FY+NGV+ GVA+ I + Y+PA+SL + +NFG P FKYP Y P+ Sbjct: 138 IFYKNGVNQGVAYKDIFEG----VYFPAISLYKSCTVSINFG--PCFKYPPKDLTYRPMS 191 Query: 281 E 281 + Sbjct: 192 D 192

PyMOL of 3toj

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1245
3toj_A		213	SET1/ASH2 histone methyltransferase complex subun;	3e-45
2yyo_A		171	SPRY domain-containing protein 3; NPPSFA, national	1e-34
3emw_A		217	SPRY domain-containing SOCS box protein 2; apoptos	5e-29
3m62_A		968	Ubiquitin conjugation factor E4; armadillo-like re	1e-27
2jk9_A		212	SPRY domain-containing SOCS box protein 1; transcr	1e-27
2afj_A		226	Gene rich cluster, C9 gene; beta sandwich, gene re	4e-26
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2vje_A		64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	3e-06
2vje_B		63	MDM4 protein; proto-oncogene, phosphorylation, alt	7e-06
2yho_A		79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	8e-06
2ecg_A		75	Baculoviral IAP repeat-containing protein 4; BIRC4	4e-05
4epo_C		149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-04
2ea5_A		68	Cell growth regulator with ring finger domain prot	2e-04
2csy_A		81	Zinc finger protein 183-like 1; ring finger protei	4e-04
2y1n_A		389	E3 ubiquitin-protein ligase; ligase-transferase co	4e-04
2djb_A		72	Polycomb group ring finger protein 6; PCGF6, ring	7e-04

>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} Length = 213	Back alignment and structure

 Score =  161 bits (409), Expect = 3e-45
 Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 21/200 (10%)

Query: 98  GILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLE- 156
           G L        V L        ++I+   L V     +S  RA+  V KG W +E+T++ 
Sbjct: 2   GDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDE 61

Query: 157 --TSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNK-EAEPYGQSWVAGDIIG 213
                  +LGW+           +G    SY++  ++  K+++   + Y   +  GD++G
Sbjct: 62  MPPDTAARLGWSQPLGNLQ--APLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLG 119

Query: 214 CCIDLDSDEIS--------FYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFG 265
             I+L  D IS        FY+NGV+ GVA+  I        Y+PA+SL +     +NFG
Sbjct: 120 FYINLPEDTISGRGSSEIIFYKNGVNQGVAYKDI----FEGVYFPAISLYKSCTVSINFG 175

Query: 266 ARPFKYPIN--CYLPLQESP 283
              FKYP     Y P+ +  
Sbjct: 176 P-CFKYPPKDLTYRPMSDMG 194

PyMOL of 3toj

>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} Length = 171	Back alignment and structure

>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Length = 217	Back alignment and structure

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968	Back alignment and structure

>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Length = 212	Back alignment and structure

>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Length = 226	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64	Back alignment and structure

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63	Back alignment and structure

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79	Back alignment and structure

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75	Back alignment and structure

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149	Back alignment and structure

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68	Back alignment and structure

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81	Back alignment and structure

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389	Back alignment and structure

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1245
d2fnja1		217	b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophi	4e-20
d2afja1		213	b.29.1.22 (A:12-224) SPRY domain-containing SOCS b	1e-19
d1fbva4		79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-06
d1chca_		68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-04
d1bora_		56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-04

>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217	Back information, alignment and structure


class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: LD34464p
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 88.3 bits (218), Expect = 4e-20
 Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 25/164 (15%)

Query: 135 FSSARANVCVWKGKWMYEVTLE---TSGVQQLGWATLSCPFTDHK---GVGDADDSYAFD 188
               R  V + KG  ++E+            +G  T   P         VG  + S+ +D
Sbjct: 54  TDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQSLVGSTEQSWGWD 113

Query: 189 GRRVKKWNKEAE----------PYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSG 238
             R K ++                 ++++  D     +D+D   +SF  +   LG+AF G
Sbjct: 114 LGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGIAFRG 173

Query: 239 IRKMGPGFGYYPAVSLSQGERCV-LNFGARPFKYPINCYLPLQE 281
           +     G   YP VS   G   + + +       P    LPL +
Sbjct: 174 L----RGKKLYPIVSAVWGHCEITMRYIGGLDPEP----LPLMD 209

PyMOL of d2fnja1

>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 213	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68	Back information, alignment and structure

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1245
d2fnja1		217	LD34464p {Fruit fly (Drosophila melanogaster) [Tax	99.95
d2afja1		213	SPRY domain-containing SOCS box protein 2 {Mouse (	99.94
d2fbea1		188	Similar to Ret finger protein-like 1 {Human (Homo	99.6
d2iwgb1		179	52 kDa Ro protein {Human (Homo sapiens) [TaxId: 96	99.57
d1wgma_		98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.12
d2c2la2		80	STIP1 homology and U box-containing protein 1, STU	99.09
d1t1ha_		78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.05
d1fbva4		79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1rmda2		86	V(D)J recombination activating protein 1 (RAG1), d	98.91
d1jm7a_		103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.84
d2baya1		56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.7
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	98.69
d1jm7b_		97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.56
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.52
d1bora_		56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.47
d1iyma_		55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.43
d1v87a_		114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.42
d3dplr1		88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.3
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	98.15
d1vyxa_		60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.8
d1wima_		94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	96.59

>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: LD34464p
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=3.6e-27  Score=205.21  Aligned_cols=159  Identities=20%  Similarity=0.270  Sum_probs=132.9

Q ss_pred             EEEECCCCCCCCEEEECCCCEEEEE----CCEEEEEECCEEECCEEEEEEEEEEC---CEEEEEEECCCCCCCC---CCC
Q ss_conf             2884877688983992899389950----65205982921215979999999841---9189998449999999---999
Q 000873          108 IVGLEESSICGDVRIAKLPLLVESL----AMFSSARANVCVWKGKWMYEVTLETS---GVQQLGWATLSCPFTD---HKG  177 (1245)
Q Consensus       108 ~V~LD~~~~~~~l~IS~d~L~v~~~----~~~ssvRAt~~V~sGkwYFEV~I~s~---G~irIGvat~~~~l~~---~~g  177 (1245)
                      ...||+.+++.++.++++++.+...    .++.++|++.++.+|||||||+|.+.   +.++|||++..++.+.   ...
T Consensus        23 ~~~wn~~~~~~~~~ls~~~~~~~~~~~~~~~~~~vrgt~g~ssGk~YWEV~v~~~~~~~~~~IGV~~~~~~~~~~~~~~~  102 (217)
T d2fnja1          23 KHSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQSL  102 (217)
T ss_dssp             HTSEEEEEECTTEEEETTEEEEEEECCCTTEEEEEEESCCBCSSEEEEEEECCGGGCTTCCEEEEECTTSCSEEESSCCC
T ss_pred             CCCCCHHCCCCCEEEECCCCEEEEECCCCCCCCEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCC
T ss_conf             55378001788779818993699858865447748876454587389999991278987058999944657445775343


Q ss_pred             CCCCCCCEEEECCCCCEECCCC----------CCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCC
Q ss_conf             7689984268279940004887----------677987789999999996899769999879042010003334689983
Q 000873          178 VGDADDSYAFDGRRVKKWNKEA----------EPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFG  247 (1245)
Q Consensus       178 iG~d~~Sygy~g~~g~~~h~~~----------~~yG~~f~~GDVIGC~IDld~gtI~FtkNG~~LGvAF~~i~~~~~~~~  247 (1245)
                      +|++.+||+|++.++..||++.          ..|+++|..||||||+||+++|+|+||+||+.+|+||++++    +..
T Consensus       103 ~G~~~~s~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~gDvIGV~LD~d~gtLsF~kNG~~lGvAf~~l~----~~~  178 (217)
T d2fnja1         103 VGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGIAFRGLR----GKK  178 (217)
T ss_dssp             TTSSTTEEEEETTTTEEEESTTTSCCEESSTTCCTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCT----TCC
T ss_pred             CCCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEEEEEECCC----CCE
T ss_conf             3678876337449987982488856432575445677667999999999679988999999979567773799----981


Q ss_pred             EEEEEEE-CCCCEEEEECCCCCCCC
Q ss_conf             8999993-79978999529999745
Q 000873          248 YYPAVSL-SQGERCVLNFGARPFKY  271 (1245)
Q Consensus       248 lYPaVSl-~~g~~V~vNFG~~PFkY  271 (1245)
                      |||+||. ..+..|+++|... +..
T Consensus       179 lyP~vs~~~~~~~v~~~~~~~-~~~  202 (217)
T d2fnja1         179 LYPIVSAVWGHCEITMRYIGG-LDP  202 (217)
T ss_dssp             BEEEEEECCTTCEEEEEEEEE-ECS
T ss_pred             EEEEEEECCCCCEEEEEECCC-CCC
T ss_conf             888999535884899997687-688

PyMOL of d2fnja1

>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}	Back information, alignment and structure

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure