Citrus Sinensis ID: 000878

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240-
MTTLLPELQRRDAVVTESVETTSPSSSKSSDLDEEEDDDSPILIFCFFHKAVRNELDALHQLAMNFATGHRVDILSLSERYRFLHSVYKHHSNAEDEVIFPALDIRVKNVARKYSLEHEGESNLFDHLFQLLNSYTQNDESFPKELASCSRALQTSINQHMSKEEQQVFPLLTQHFSLEEQASLVWQFFCSIPVNMMAEFLPWLSSSISTNEYQDMRKCLSKIVPEEKLLQQVVFTWMKRRNDADKTGSCVDDSRVQCPLDSIANRLIQQMDRINCACDSPKSGKRKYLEPINEVSSIHGTYPIDEILLWHNAIRQELNEIAEESRKIQLSGDFTNLLAFNERLQFIAEVLIFHCIAEVNVIFPAVDGASSFSQKHAEEESQFNDFRLLIESIQNEGAISTSAEFYAKLCSHADQIMETIERHFHKVEVQVLPLARNHFSFKRQREILYQSLCEMPLKLIERVLPWLMGSLTENEARSVLKNMQSAAPATDAALIILFSGWGCKGRNQSLCLSPNAVGCCPVKRLTDIEEKFSCSCCTRVATLCTNAGLISIHGDEITRPLKKNISLSCKNGNTLLPLESVTSHVGSCSDQSCCVPGLGVNSNNLGLSSHSTAKSLRSLSFSSSAPSLNSSLFMWETDNSSYDVVSAERPIDTIFKFHKAISKDLEYLDMESAKLSDCDETFLRQFIGRFRLLWGLYRAHSNAEDEIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSEVSQLHESLPNADSEKEDKFSADYGSDNRRKYNELATKLQGMCKSIKVTLDQHILGEELELWPLFGRHFSVEEQDKIVGRIIGSTGAEVLQSMLPWVTSALTQDEQSKLIDTWKHATKNTMFNEWLDECWKGPHESSFLTETPDANISHKDSDLHESLDQSDLMFKPGWKDIFRMNQNELEAEIRKVYRDPTLDPRRKAYLAQNLMTSRWIATQQKLPQATAGESSKGEEGLDCYASYRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKLLNHKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSYNTRLIKNDTTVSNSSTSHK
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHcHHHHHHHccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccHcccccccccccccccccccHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccEEEccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHcHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHccccccEcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHccccEEEEccccccEEEccccccccccccccHHHHHHHHHHHccccccccHHcccccccccEHHHHHHHHEEEcccccccEcccccccEEcccccccccEEccccccEEEEEccccccHHccccccccccHHHHccccccEEEcccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccHHHcccEEEEEEccccccccEEEEEEEEEcccccccccEEEEccccccccccccc
mttllpelqrrdavvtesvettspssskssdldeeedddspilIFCFFHKAVRNELDALHQLAMNFATGHRVDILSLSERYRFLHSVYKhhsnaedevifpaldIRVKNVARKYSlehegesnlFDHLFQLLNSytqndesfpkELASCSRALQTSINQHMSKEEQQVFPLLTQHFSLEEQASLVWQFFCSipvnmmaeflpwlsssistneYQDMRKCLSKIVPEEKLLQQVVFTWMKrrndadktgscvddsrvqcplDSIANRLIQQMDrincacdspksgkrkylepinevssihgtypidEILLWHNAIRQELNEIAEESRKIQLSGDFTNLLAFNERLQFIAEVLIFHCIAEvnvifpavdgassfsqkhaeeesqFNDFRLLIESIQNEGAISTSAEFYAKLCSHADQIMETIERHFHKVEVQVLPLARNHFSFKRQREILYQSLCEMPLKLIERVLPWLMGSLTENEARSVLKNMQSAAPATDAALIILFSgwgckgrnqslclspnavgccpvkrltdieekfscscctrVATLCtnaglisihgdeitrplkknislsckngntllplesvtshvgscsdqsccvpglgvnsnnlglsshsTAKSLrslsfsssapslnsslfmwetdnssydvvsaerpiDTIFKFHKAISKDLeyldmesaklsdcdETFLRQFIGRFRLLWGLYrahsnaedeivfpaleskealhnvshsytldhkqeEKLFEDISCVLSEVSQlheslpnadsekedkfsadygsdnrRKYNELATKLQGMCKSIKVTLDqhilgeelelwplfgrhfsveEQDKIVGRIIGSTGAEVLQSMLPWVTSALTQDEQSKLIDTWKHATKNTMFNEWLdecwkgphessfltetpdanishkdsdlhesldqsdlmfkpgWKDIFRMNQNELEAEIRKvyrdptldprRKAYLAQNLMTSRWIATqqklpqatagesskgeegldcyasyrdpekqvfgcehykrnckiraaccgklftcrfchdkasdhsmdrkaTSEMMCMHCLKiqaigpncttpscnglsmAKYYCNICKffddertvyhcpfcnlcrvggglgvdffhcmtcncclglkllnHKCLEKcletncpiccdflftssetvralpcghymhlacfqaytcshytcpicskslgdMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWlyhkcgfcgsyntrlikndttvsnsstshk
mttllpelqrrdavvtesvettspssskssdldeeeDDDSPILIFCFFHKAVRNELDALHQLAMNFATGHRVDILSLSERYRFLHSVYKHhsnaedevifpaLDIRVKNVARKYSLEHEGESNLFDHLFQLLNSYTQNDESFPKELASCSRALQTSINQHMSKEEQQVFPLLTQHFSLEEQASLVWQFFCSIPVNMMAEFLPWLSSSISTNEYQDMRKCLSKIVPEEKLLQQVVFTWmkrrndadktgscvddsrvqCPLDSIANRLIQQMDRINCACDSPKSGKRKYLEPINEVSSIHGTYPIDEILLWHNAIRQELNEIAEESRKIQLSGDFTNLLAFNERLQFIAEVLIFHCIAEVNVIFPAVDGASSFSQKHAEEESQFNDFRLLIESIQNEGAISTSAEFYAKLCSHADQIMETIERHFHKVEVQVLPLARNHFSFKRQREILYQSLCEMPLKLIERVLPWLMGSLTENEARSVLKNMQSAAPATDAALIILFSGWGCKGRNQSLCLSPNAVGCCPVKRLTDIEEKFSCSCCTRVATLCTNAGLISIHGDEITRPLKKNISLSCKNGNTLLPLESVTSHVGSCSDQSCCVPGLGVNSNNLGLSSHSTAKSLRSLSFSSSAPSLNSSLFMWETDNSSYDVVSAERPIDTIFKFHKAISKDLEYLDMESAKLSDCDETFLRQFIGRFRLLWGLYRAHSNAEDEIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSEVSQLheslpnadsekedkfsadygsdnrRKYNELATKLQGMCKSIKVTLDQHILGEELELWPLFGRHFSVEEQDKIVGRIIGSTGAEVLQSMLPWVTSALTQDEQSKLIDTWKHATKNTMFNEWLDECWKGPHESSFLTETPDANISHKDSDLHESLDQSDLMFKPGWKDIFRMNQNELEAEirkvyrdptldprRKAYLAQNLMTSRWIATqqklpqatagesskgeeGLDCYASYRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKLLNHKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSyntrlikndttvsnsstshk
MTTLLPELQRRDAvvtesvettspssskssdldeeedddsPILIFCFFHKAVRNELDALHQLAMNFATGHRVDILSLSERYRFLHSVYKHHSNAEDEVIFPALDIRVKNVARKYSLEHEGESNLFDHLFQLLNSYTQNDESFPKELASCSRALQTSINQHMSKEEQQVFPLLTQHFSLEEQASLVWQFFCSIPVNMMAEFLPWLSSSISTNEYQDMRKCLSKIVPEEKLLQQVVFTWMKRRNDADKTGSCVDDSRVQCPLDSIANRLIQQMDRINCACDSPKSGKRKYLEPINEVSSIHGTYPIDEILLWHNAIRQELNEIAEESRKIQLSGDFTNLLAFNERLQFIAEVLIFHCIAEVNVIFPAVDGASSFSQKHAEEESQFNDFRLLIESIQNEGAISTSAEFYAKLCSHADQIMETIERHFHKVEVQVLPLARNHFSFKRQREILYQSLCEMPLKLIERVLPWLMGSLTENEARSVLKNMQSAAPATDAALIILFSGWGCKGRNQSLCLSPNAVGCCPVKRLTDIEEKFSCSCCTRVATLCTNAGLISIHGDEITRPLKKNISLSCKNGNTLLPLESVTSHVGSCSDQSCCVPGLGVNSNNLGLSSHSTAKslrslsfsssapslnsslFMWETDNSSYDVVSAERPIDTIFKFHKAISKDLEYLDMESAKLSDCDETFLRQFIGRFRLLWGLYRAHSNAEDEIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSEVSQLHESLPNADSEKEDKFSADYGSDNRRKYNELATKLQGMCKSIKVTLDQHILGEELELWPLFGRHFSVEEQDKIVGRIIGSTGAEVLQSMLPWVTSALTQDEQSKLIDTWKHATKNTMFNEWLDECWKGPHESSFLTETPDANISHKDSDLHESLDQSDLMFKPGWKDIFRMNQNELEAEIRKVYRDPTLDPRRKAYLAQNLMTSRWIATQQKLPQATAGESSKGEEGLDCYASYRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKLLNHKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDallaaeelpeeYRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSYNTRLIKNDTTVSNSSTSHK
*****************************************ILIFCFFHKAVRNELDALHQLAMNFATGHRVDILSLSERYRFLHSVYKHHSNAEDEVIFPALDIRVKNVARKYSLEHEGESNLFDHLFQLLNSYT*******************************VFPLLTQHFSLEEQASLVWQFFCSIPVNMMAEFLPWLSSSISTNEYQDMRKCLSKIVPEEKLLQQVVFTWMKRRNDADKTGSCVDDSRVQCPLDSIANRLIQQMDRINCACDS*****RKYLEPINEVSSIHGTYPIDEILLWHNAIRQELNEIAEESRKIQLSGDFTNLLAFNERLQFIAEVLIFHCIAEVNVIFPAVDG**************FNDFRLLIESIQNEGAISTSAEFYAKLCSHADQIMETIERHFHKVEVQVLPLARNHFSFKRQREILYQSLCEMPLKLIERVLPWLMGSLTENEARSVL******APATDAALIILFSGWGCKGRNQSLCLSPNAVGCCPVKRLTDIEEKFSCSCCTRVATLCTNAGLISIHGDEITRPLKKNISLSCKNGNTLLPLESVTSHVGSCSDQSCCVPGLGVN******************************LFMWETDNSSYDVVSAERPIDTIFKFHKAISKDLEYLDMESAKLSDCDETFLRQFIGRFRLLWGLYRAHSNAEDEIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLS*********************************ELATKLQGMCKSIKVTLDQHILGEELELWPLFGRHFSVEEQDKIVGRIIGSTGAEVLQSMLPWVTSALTQDEQSKLIDTWKHATKNTMFNEWLDECWKGP*****************************LMFKPGWKDIFRMNQNELEAEIRKVYRDPTLDPRRKAYLAQNLMTSRWIAT******************LDCYASYRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDK************EMMCMHCLKIQAIGPNCTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKLLNHKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSYNTRLIK*************
***L************************************PILIFCFFHKAVRNELDALHQLAMNFATGHRVDILSLSERYRFLHSVYKHHSNAEDEVIFPALDIRVKNVARKYSLEHEGESNLFDHLFQLLNSYTQNDESFPKELASCSRALQTSINQHMSKEEQQVFPLLTQHFSLEEQASLVWQFFCSIPVNMMAEFLPWLSSSISTNEYQDMRKCLSKIVPEEKLLQQVVFTWMKRRN**********************************************************TYPIDEILLWHNAIRQELNEIAEESRKIQLSGDFTNLLAFNERLQFIAEVLIFHCIAEVNVIFPAVDGAS************FNDFRLLIESIQ******TSAEFYAKLCSHADQIMETIERHFHKVEVQVLPLARNHFSFKRQREILYQSLCEMPLKLIERVLPWLMGSLTENEARSVLKNMQSAAPATDAALIILFSGWGCKGRN****************RLTDIEEKF******************************************************************GVNSNNLG*****************************************ERPIDTIFKFHKAISKDLEYLDMESAKLSDCDETFLRQFIGRFRLLWGLYRAHSNAEDEIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSEVSQLHE**************ADYGSDNRRKYNELATKLQGMCKSIKVTLDQHILGEELELWPLFGRHFSVEEQDKIVGRIIGSTGAEVLQSMLPWVTSALTQDEQSKLIDTWKHATKNTMFNEWLDEC***************************************WKDIFR**********************RKAYLAQNLMTSRWI*******************************KQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKLLNHKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSYNTR****************
MTTLLPELQRRD*************************DDSPILIFCFFHKAVRNELDALHQLAMNFATGHRVDILSLSERYRFLHSVYKHHSNAEDEVIFPALDIRVKNVARKYSLEHEGESNLFDHLFQLLNSYTQNDESFPKELASCSRALQTSINQHMSKEEQQVFPLLTQHFSLEEQASLVWQFFCSIPVNMMAEFLPWLSSSISTNEYQDMRKCLSKIVPEEKLLQQVVFTWMKRRND********DDSRVQCPLDSIANRLIQQMDRINCACDSPKSGKRKYLEPINEVSSIHGTYPIDEILLWHNAIRQELNEIAEESRKIQLSGDFTNLLAFNERLQFIAEVLIFHCIAEVNVIFPAVDGA************QFNDFRLLIESIQNEGAISTSAEFYAKLCSHADQIMETIERHFHKVEVQVLPLARNHFSFKRQREILYQSLCEMPLKLIERVLPWLMGSLTENEARSVLKNMQSAAPATDAALIILFSGWGCKGRNQSLCLSPNAVGCCPVKRLTDIEEKFSCSCCTRVATLCTNAGLISIHGDEITRPLKKNISLSCKNGNTLLPLES**********QSCCVPGLGVNSNNLGLSSHS****************LNSSLFMWETDNSSYDVVSAERPIDTIFKFHKAISKDLEYLDMESAKLSDCDETFLRQFIGRFRLLWGLYRAHSNAEDEIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSEV****************KFSADYGSDNRRKYNELATKLQGMCKSIKVTLDQHILGEELELWPLFGRHFSVEEQDKIVGRIIGSTGAEVLQSMLPWVTSALTQDEQSKLIDTWKHATKNTMFNEWLDECWKGPHESSFLTETPDANISHKDSDLHESLDQSDLMFKPGWKDIFRMNQNELEAEIRKVYRDPTLDPRRKAYLAQNLMTSRWIATQQ***************GLDCYASYRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKLLNHKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSYNTRLIKND***********
*************************************DDSPILIFCFFHKAVRNELDALHQLAMNFATGHRVDILSLSERYRFLHSVYKHHSNAEDEVIFPALDIRVKNVARKYSLEHEGESNLFDHLFQLLNSYTQNDESFPKELASCSRALQTSINQHMSKEEQQVFPLLTQHFSLEEQASLVWQFFCSIPVNMMAEFLPWLSSSISTNEYQDMRKCLSKIVPEEKLLQQVVFTWMKRR**********************************************************GTYPIDEILLWHNAIRQELNEIAEESRKIQLSGDFTNLLAFNERLQFIAEVLIFHCIAEVNVIFPAVDGASSFSQKHAEEESQFNDFRLLIESIQNEGAISTSAEFYAKLCSHADQIMETIERHFHKVEVQVLPLARNHFSFKRQREILYQSLCEMPLKLIERVLPWLMGSLTENEARSVLKNMQSAAPATDAALIILFSGWGCKGRNQSLCLSPNAVGCCPVKRLTDIEEKFSCSCCTRVA*************************************************QSCCVPGLGVNSNNLGLSSHSTAKSLRSLSFSSSAPSLNSSLFMWETD*SSYDVVSAERPIDTIFKFHKAISKDLEYLDMESAKLSDCDETFLRQFIGRFRLLWGLYRAHSNAEDEIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSEVSQLHESLP*************YGSDNRRKYNELATKLQGMCKSIKVTLDQHILGEELELWPLFGRHFSVEEQDKIVGRIIGSTGAEVLQSMLPWVTSALTQDEQSKLIDTWKHATKNTMFNEWLDECWKG*****************************DLMFKPGWKDIFRMNQNELEAEIRKVYRDPTLDPRRKAYLAQNLMTSRWIATQQKL*******************SY***EKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKLLNHKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSYNTRLIKND***********
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MTTLLPELQRRDAVVTESVETTSPSSSKSSDLDEEEDDDSPILIFCFFHKAVRNELDALHQLAMNFATGHRVDILSLSERYRFLHSVYKHHSNAEDEVIFPALDIRVKNVARKYSLEHEGESNLFDHLFQLLNSYTQNDESFPKELASCSRALQTSINQHMSKEEQQVFPLLTQHFSLEEQASLVWQFFCSIPVNMMAEFLPWLSSSISTNEYQDMRKCLSKIVPEEKLLQQVVFTWMKRRNDADKTGSCVDDSRVQCPLDSIANRLIQQMDRINCACDSPKSGKRKYLEPINEVSSIHGTYPIDEILLWHNAIRQELNEIAEESRKIQLSGDFTNLLAFNERLQFIAEVLIFHCIAEVNVIFPAVDGASSFSQKHAEEESQFNDFRLLIESIQNEGAISTSAEFYAKLCSHADQIMETIERHFHKVEVQVLPLARNHFSFKRQREILYQSLCEMPLKLIERVLPWLMGSLTENEARSVLKNMQSAAPATDAALIILFSGWGCKGRNQSLCLSPNAVGCCPVKRLTDIEEKFSCSCCTRVATLCTNAGLISIHGDEITRPLKKNISLSCKNGNTLLPLESVTSHVGSCSDQSCCVPGLGVNSNNLGLSSHSTAKSLRSLSFSSSAPSLNSSLFMWETDNSSYDVVSAERPIDTIFKFHKAISKDLEYLDMESAKLSDCDETFLRQFIGRFRLLWGLYRAHSNAEDEIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSEVSQLHESLPNADSEKEDKFSADYGSDNRRKYNELATKLQGMCKSIKVTLDQHILGEELELWPLFGRHFSVEEQDKIVGRIIGSTGAEVLQSMLPWVTSALTQDEQSKLIDTWKHATKNTMFNEWLDECWKGPHESSFLTETPDANISHKDSDLHESLDQSDLMFKPGWKDIFRMNQNELEAEIRKVYRDPTLDPRRKAYLAQNLMTSRWIATQQKLPQATAGESSKGEEGLDCYASYRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKLLNHKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSYNTRLIKNDTTVSNSSTSHK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1241 2.2.26 [Sep-21-2011]
O14099425 Uncharacterized RING fing yes no 0.239 0.698 0.366 2e-56
Q96PM5261 RING finger and CHY zinc yes no 0.188 0.896 0.437 3e-51
Q9CR50261 RING finger and CHY zinc yes no 0.184 0.877 0.438 4e-50
Q6IRP0312 RING finger protein 126-B N/A no 0.036 0.144 0.456 0.0002
Q6DIP3311 RING finger protein 126 O no no 0.036 0.144 0.456 0.0002
Q06003461 Protein goliath OS=Drosop no no 0.058 0.156 0.324 0.0005
Q7T0Q3312 RING finger protein 126-A N/A no 0.036 0.144 0.456 0.0005
Q9D0C1305 E3 ubiquitin-protein liga no no 0.036 0.147 0.456 0.0006
Q9BV68326 RING finger protein 126 O no no 0.036 0.138 0.434 0.0007
Q9Y4L5304 E3 ubiquitin-protein liga no no 0.036 0.148 0.456 0.0008
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1 Back     alignment and function desciption
 Score =  222 bits (565), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/308 (36%), Positives = 174/308 (56%), Gaps = 11/308 (3%)

Query: 921  QNELEAEIRKVYRDPTLDPRRKAYLAQNLMTSRWIATQQKLPQATAGESSKGE-EGLDCY 979
            Q+ +  +I ++     L  +RKA L Q ++ S ++    K  +    ES + +    D  
Sbjct: 74   QDSVREKIHEIQSMSQLSEKRKALLMQKMLMSGYL----KYRRTHKKESDENQLSSSDLE 129

Query: 980  ASYRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLK 1039
             +Y D E+++ GC HY RNCK++   C + +TCR CH+ A DH ++R A   M+CM C K
Sbjct: 130  KTYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACDHVLERPAVENMLCMICSK 189

Query: 1040 IQAIGPNCTTPSCNGLSMAKYYCNICKFFDDE--RTVYHCPFCNLCRVGGGLGVDFFHCM 1097
            +Q     C    C    M +YYCN CK +DD+  ++ YHC  C +CR+G GLG D+FHC 
Sbjct: 190  VQPAAQYCKY--CKN-CMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCK 246

Query: 1098 TCNCCLGLKLLN-HKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSH 1156
            TC  CL + + N H+C+E+  + NCPIC +++F S E V  L C H +H  C + Y  ++
Sbjct: 247  TCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTN 306

Query: 1157 YTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWLYHKC 1216
            Y CP C K++ ++   F ++D  +  + +P  Y   +  I CNDC  +   ++H+L HKC
Sbjct: 307  YRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKC 366

Query: 1217 GFCGSYNT 1224
              C SYNT
Sbjct: 367  NSCHSYNT 374

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1 Back     alignment and function description
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1 Back     alignment and function description
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1 Back     alignment and function description
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1 Back     alignment and function description
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3 Back     alignment and function description
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1 Back     alignment and function description
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1 SV=1 Back     alignment and function description
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1241
4494390891256 PREDICTED: uncharacterized protein LOC10 0.998 0.986 0.719 0.0
4494975691256 PREDICTED: uncharacterized protein LOC10 0.998 0.986 0.718 0.0
2555860651251 zinc finger protein, putative [Ricinus c 0.995 0.988 0.710 0.0
3565227751242 PREDICTED: uncharacterized protein LOC10 0.959 0.958 0.733 0.0
2241187881251 predicted protein [Populus trichocarpa] 0.988 0.980 0.703 0.0
3565311941238 PREDICTED: uncharacterized protein LOC10 0.979 0.982 0.714 0.0
2254559841234 PREDICTED: uncharacterized protein LOC10 0.966 0.971 0.732 0.0
3565130681236 PREDICTED: uncharacterized protein LOC10 0.979 0.983 0.714 0.0
3565244291234 PREDICTED: uncharacterized protein LOC10 0.979 0.984 0.719 0.0
1187646011236 putative E3 ubiquitin ligase [Lotus japo 0.976 0.980 0.708 0.0
>gi|449439089|ref|XP_004137320.1| PREDICTED: uncharacterized protein LOC101215023 [Cucumis sativus] Back     alignment and taxonomy information
 Score = 1837 bits (4759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 905/1258 (71%), Positives = 1016/1258 (80%), Gaps = 19/1258 (1%)

Query: 1    MTTLLPELQRRD-----AVVTESVETTSPSSSKSSDLD--EEEDDDSPILIFCFFHKAVR 53
            M T L  L  RD     A +  SV     +SS SS  D        SPILIF FFHKA+R
Sbjct: 1    MATPLTGLHHRDGGGGVAFLANSVNKMDSASSPSSPNDCLRSSQPQSPILIFLFFHKAIR 60

Query: 54   NELDALHQLAMNFATGHRVDILSLSERYRFLHSVYKHHSNAEDEVIFPALDIRVKNVARK 113
            NELD LH+LAM FATG R DI  L ERY FL S+YKHHSNAEDEVIFPALDIRVKNVA+ 
Sbjct: 61   NELDTLHRLAMAFATGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQT 120

Query: 114  YSLEHEGESNLFDHLFQLLNSYTQNDESFPKELASCSRALQTSINQHMSKEEQQVFPLLT 173
            YSLEH+GESNLFDHLF+LLN  TQNDESFP+ELASC+ AL+TS++QHM+KEE+QVFPLL 
Sbjct: 121  YSLEHKGESNLFDHLFELLNCNTQNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLI 180

Query: 174  QHFSLEEQASLVWQFFCSIPVNMMAEFLPWLSSSISTNEYQDMRKCLSKIVPEEKLLQQV 233
            + FSLEEQASLVWQFFCSIPV MMA+FLPWLSSS+S++E+QD++KCL K+VPEEKLLQQV
Sbjct: 181  EKFSLEEQASLVWQFFCSIPVYMMAQFLPWLSSSVSSDEFQDLQKCLIKVVPEEKLLQQV 240

Query: 234  VFTWMKRRNDADKTGSCVDDSRVQCPLDSIANRLIQQMDRINCACDSPKSGKRKYLEPIN 293
            +FTWM+ R+  D + SC  DS V    D   +    Q + +NCAC     GKRKY+E  +
Sbjct: 241  IFTWMEARSCGDVSTSCFGDSLVDYHTDPTTDTSNHQTENVNCACALTSPGKRKYVESSD 300

Query: 294  EVSSIHGTYPIDEILLWHNAIRQELNEIAEESRKIQLSGDFTNLLAFNERLQFIAEVLIF 353
            ++S    T+PI+EIL WHNAI++ELN+IAEE+RKIQLSG+F+NL  FNERLQFIAEV IF
Sbjct: 301  DISDYAVTHPINEILFWHNAIKRELNDIAEEARKIQLSGNFSNLSTFNERLQFIAEVCIF 360

Query: 354  HCIAEVNVIFPAVDGASSFSQKHAEEESQFNDFRLLIESIQNEGAISTS-AEFYAKLCSH 412
            H IAE  VIFPAVDG  SF Q+HAEEESQFN+FR LIE+IQ+ GA STS AEFY KLCSH
Sbjct: 361  HSIAEDKVIFPAVDGEFSFLQEHAEEESQFNEFRCLIENIQSAGASSTSRAEFYVKLCSH 420

Query: 413  ADQIMETIERHFHKVEVQVLPLARNHFSFKRQREILYQSLCEMPLKLIERVLPWLMGSLT 472
            ADQIM+TI+RHFH  EVQVLPLAR HFSFKRQRE+LYQSLC MPLKLIERVLPWL+GS+ 
Sbjct: 421  ADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSVK 480

Query: 473  ENEARSVLKNMQSAAPATDAALIILFSGWGCKGRNQSLCLSPNAVGCCPVKRLTDIEEKF 532
            E+EAR +LKN+Q AAPA D AL+ LFSGW CK RN  LCLS  AVGCC VKRLTDIEE  
Sbjct: 481  EDEARDILKNIQLAAPAKDTALVTLFSGWACKARNNGLCLSSRAVGCCAVKRLTDIEEDI 540

Query: 533  SCSCCTRVATLCTNAGLISIH--GDEITRPLKKNISLSCKNGNTLLPLESVTSHVGSCSD 590
              S C+    L    G  S +     + R   +N+ L C + +  +  E+V      CSD
Sbjct: 541  VQSSCSCAPALAAREGSKSDNETNANVKRLTIRNVPLPCGSCDGRIASETVNVQKQCCSD 600

Query: 591  QSCCVPGLGVNSNNLGLSSHSTAKSLRSLSFSSSAPSLNSSLFMWETDNSSYDVVSAERP 650
            QSC VP LGVN  NLGLSS  T+KS+RSLS SS APSLNSSLF WETD  S DV SA RP
Sbjct: 601  QSCRVPALGVNIKNLGLSSIFTSKSMRSLSPSSCAPSLNSSLFSWETDCGSSDVGSAGRP 660

Query: 651  IDTIFKFHKAISKDLEYLDMESAKLSDCDETFLRQFIGRFRLLWGLYRAHSNAEDEIVFP 710
            IDTIFKFHKAI KDLEYLD+ES KLSDCD TFLR FIGRFRLLWGLYRAHSNAED+IVFP
Sbjct: 661  IDTIFKFHKAIRKDLEYLDVESGKLSDCDGTFLRPFIGRFRLLWGLYRAHSNAEDDIVFP 720

Query: 711  ALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSEVSQLHESLPNADSEKEDKFSADY-- 768
            ALESKE LHNVSHSYTLDHKQEEKLFEDISCVLSE+S LHESL   +   +  FS     
Sbjct: 721  ALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISVLHESL--HEVPLDGSFSRSVVG 778

Query: 769  -----GSDNRRKYNELATKLQGMCKSIKVTLDQHILGEELELWPLFGRHFSVEEQDKIVG 823
                 G D  RKYNELATKLQGMCKSI+VTLDQHI  EELELWPLFG+HFSVEEQDKIVG
Sbjct: 779  SVNMVGEDCNRKYNELATKLQGMCKSIRVTLDQHIYREELELWPLFGKHFSVEEQDKIVG 838

Query: 824  RIIGSTGAEVLQSMLPWVTSALTQDEQSKLIDTWKHATKNTMFNEWLDECWKGPHESSFL 883
            RIIG+TGAEVLQSMLPWVTSALTQDEQ+ L+DTWK ATKNTMFNEWL+ECW+G   S+  
Sbjct: 839  RIIGTTGAEVLQSMLPWVTSALTQDEQNTLMDTWKQATKNTMFNEWLNECWRGAASSTIN 898

Query: 884  TETPDANISHKDSDLHESLDQSDLMFKPGWKDIFRMNQNELEAEIRKVYRDPTLDPRRKA 943
             ET +A ++ KDS L ESLDQ+D MFKPGWKDIFRMNQNELE+EIRKVY+D TLDPRRKA
Sbjct: 899  GETLEACVAQKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKA 958

Query: 944  YLAQNLMTSRWIATQQKLPQATAGESSKGEEGLDCYASYRDPEKQVFGCEHYKRNCKIRA 1003
            YL QNLMTSRWIA QQKLPQA   ++S GE+     AS+R  EK+ FGCEHYKRNCK+ A
Sbjct: 959  YLVQNLMTSRWIAAQQKLPQANIEDNSNGEDVTGRTASFRCAEKKEFGCEHYKRNCKLLA 1018

Query: 1004 ACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTPSCNGLSMAKYYCN 1063
            ACCGKLFTCRFCHD  SDHSMDRKATSEMMCM+CL IQ +G  CTTPSCNGLSMAKYYCN
Sbjct: 1019 ACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQPVGSICTTPSCNGLSMAKYYCN 1078

Query: 1064 ICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKLLNHKCLEKCLETNCPI 1123
            ICKFFDDER VYHCPFCNLCRVG GLG+DFFHCM CNCCLG+KL +HKCLEK LETNCPI
Sbjct: 1079 ICKFFDDERAVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPI 1138

Query: 1124 CCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAE 1183
            CCDFLFTSS TVR LPCGHYMH ACFQAYTCSHYTCPICSKSLGDMA+YFGM+DALLAAE
Sbjct: 1139 CCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAE 1198

Query: 1184 ELPEEYRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSYNTRLIKNDTTVSNSSTSHK 1241
            ELPEEYR++ QDILCNDCE+KG +RFHWLYHKCGFCGSYN+R+IKNDTT+++  +S++
Sbjct: 1199 ELPEEYRDRCQDILCNDCERKGTSRFHWLYHKCGFCGSYNSRVIKNDTTIADCPSSNQ 1256

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449497569|ref|XP_004160438.1| PREDICTED: uncharacterized protein LOC101224245 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255586065|ref|XP_002533697.1| zinc finger protein, putative [Ricinus communis] gi|223526392|gb|EEF28680.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356522775|ref|XP_003530021.1| PREDICTED: uncharacterized protein LOC100791354 [Glycine max] Back     alignment and taxonomy information
>gi|224118788|ref|XP_002317906.1| predicted protein [Populus trichocarpa] gi|222858579|gb|EEE96126.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356531194|ref|XP_003534163.1| PREDICTED: uncharacterized protein LOC100776832 [Glycine max] Back     alignment and taxonomy information
>gi|225455984|ref|XP_002278705.1| PREDICTED: uncharacterized protein LOC100254283 [Vitis vinifera] gi|297734230|emb|CBI15477.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356513068|ref|XP_003525236.1| PREDICTED: uncharacterized protein LOC100801725 [Glycine max] Back     alignment and taxonomy information
>gi|356524429|ref|XP_003530831.1| PREDICTED: uncharacterized protein LOC100803002 [Glycine max] Back     alignment and taxonomy information
>gi|118764601|dbj|BAF38781.1| putative E3 ubiquitin ligase [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1241
TAIR|locus:20896781254 BTS "BRUTUS" [Arabidopsis thal 0.958 0.948 0.658 0.0
TAIR|locus:20112661254 AT1G18910 [Arabidopsis thalian 0.249 0.247 0.565 9.2e-218
TAIR|locus:20271761259 AT1G74770 [Arabidopsis thalian 0.267 0.263 0.540 2.4e-217
POMBASE|SPAC2F3.16425 SPAC2F3.16 "ubiquitin-protein 0.244 0.715 0.358 1.9e-59
UNIPROTKB|J9NZR5259 RCHY1 "Uncharacterized protein 0.194 0.930 0.421 1.2e-56
ASPGD|ASPL0000053938 522 AN10185 [Emericella nidulans ( 0.190 0.452 0.421 2.6e-56
UNIPROTKB|Q96PM5261 RCHY1 "RING finger and CHY zin 0.184 0.877 0.429 1.9e-55
RGD|1359180261 Rchy1 "ring finger and CHY zin 0.190 0.908 0.419 3.9e-55
MGI|MGI:1915348261 Rchy1 "ring finger and CHY zin 0.184 0.877 0.425 1.7e-54
UNIPROTKB|A4IFE2261 RCHY1 "RCHY1 protein" [Bos tau 0.184 0.877 0.421 2.2e-54
TAIR|locus:2089678 BTS "BRUTUS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4221 (1490.9 bits), Expect = 0., P = 0.
 Identities = 796/1209 (65%), Positives = 940/1209 (77%)

Query:    41 PILIFCFFHKAVRNELDALHQLAMNFATGHRVDILSLSERYRFLHSVYKHHSNAEDEVIF 100
             PILIF FFHKAV +EL+ALH+LA+ FATGH VD+  L ERYRFL S+YKHH NAEDEVIF
Sbjct:    54 PILIFLFFHKAVCSELEALHRLALEFATGHHVDLRLLRERYRFLRSIYKHHCNAEDEVIF 113

Query:   101 PALDIRVKNVARKYSLEHEGESNLFDHLFQLLNSYTQNDESFPKELASCSRALQTSINQH 160
              ALDIRVKNVA+ YSLEH+GESNLFDHLF+LLNS T+ DES+ +ELA  + ALQTS++QH
Sbjct:   114 SALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSATETDESYRRELARSTGALQTSVSQH 173

Query:   161 MSKEEQQVFPLLTQHFSLEEQASLVWQFFCSIPVNMMAEFLPWLSSSISTNEYQDMRKCL 220
             ++KE++QVFPLL + F  EEQA +VW+F CSIPVNM+A FLPW+SSSIS +E ++M+ CL
Sbjct:   174 LAKEQKQVFPLLIEKFKYEEQAYIVWRFLCSIPVNMLAVFLPWISSSISVDESKEMQTCL 233

Query:   221 SKIVPEEKLLQQVVFTWMKRRNDADKTGSC-VDDSRVQCPLDSIANRLIQQMDRINCACD 279
              KIVP EKLLQQV+FTW+  +++     SC ++DS  QC LDS ++ L  +  R  CAC+
Sbjct:   234 KKIVPGEKLLQQVIFTWLGGKSNT--VASCRIEDSMFQCCLDSSSSMLPCKASREQCACE 291

Query:   280 SPKSGKRKYLEPINEVSSIHGTYPIDEILLWHNAIRQELNEIAEESRKIQLSGDFTNLLA 339
               K GKRKY E  N  SS    +P+DEI LWH +I +E+ EIA+E+RKIQLSGDF++L A
Sbjct:   292 GSKIGKRKYPELTNFGSS-DTLHPVDEIKLWHKSINKEMKEIADEARKIQLSGDFSDLSA 350

Query:   340 FNERLQFIAEVLIFHCIAEVNVIFPAVDGASSFSQKHAEEESQFNDFRLLIESIQNEGAI 399
             F+ERLQ+IAEV IFH +AE  +IFPAVDG  SFS++H EEE+QFN+FR LIE+I++ GA 
Sbjct:   351 FDERLQYIAEVCIFHSLAEDKIIFPAVDGEFSFSEEHDEEENQFNEFRCLIENIKSAGAS 410

Query:   400 STSA-EFYAKLCSHADQIMETIERHFHKVEVQVLPLARNHFSFKRQREILYQSLCEMPLK 458
             STSA EFY KLCSHADQIMETI+RHFH  E+QVLPLAR +FSFKRQ+E+LYQSLC MPL+
Sbjct:   411 STSAAEFYTKLCSHADQIMETIQRHFHNEEIQVLPLARKNFSFKRQQELLYQSLCIMPLR 470

Query:   459 LIERVLPWLMGSLTENEARSVLKNMQSAAPATDAALIILFSGWGCKGRNQSLCLSPNAVG 518
             LIERVLPWL  SLTE+EA++ LKN+Q+ AP +D AL+ LFSGW CKGR    CLSPN  G
Sbjct:   471 LIERVLPWLTASLTEDEAKNFLKNLQAGAPKSDVALVTLFSGWACKGRKAGECLSPNGNG 530

Query:   519 CCPVKRLTDIEEKF--SCSCCTRVATLCTNAGLISIHGDEITRPLKKNISLSCKNGNTLL 576
              CPVK L++I+E    SC+ C  V   CT+    S    +  RP K+   LSC+   T  
Sbjct:   531 LCPVKTLSNIKEVNLQSCNACASVP--CTSRSTKSCCQHQDKRPAKRTAVLSCEKKTTPH 588

Query:   577 PLESVTSHVGSCSDQSCCVPGLGVNSNNLGLSSHSTAKXXXXXXXXXXXXXXXXXXFMWE 636
               E       S + +SCCVP LGVN+N L L S   AK                  F+WE
Sbjct:   589 STEVANGCKPSGNGRSCCVPDLGVNNNCLELGSLPAAKAMRSSSLNSAAPALNSSLFIWE 648

Query:   637 TDNSSYDVVSAERPIDTIFKFHKAISKDLEYLDMESAKLSDCDETFLRQFIGRFRLLWGL 696
              D++S+    AERP+ TIFKFHKAISKDLE+LD+ES KL DCD TF+RQFIGRF LLWG 
Sbjct:   649 MDSNSFGTGHAERPVATIFKFHKAISKDLEFLDVESGKLIDCDGTFIRQFIGRFHLLWGF 708

Query:   697 YRAHSNAEDEIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSEVSQLHESLPNA 756
             Y+AHSNAED+I+FPALESKE LHNVSHSYTLDHKQEEKLF DI  VL+E+S LHE L  +
Sbjct:   709 YKAHSNAEDDILFPALESKETLHNVSHSYTLDHKQEEKLFGDIYSVLTELSILHEKL-QS 767

Query:   757 DSEKEDKFSADY------GSDNRRKYNELATKLQGMCKSIKVTLDQHILGEELELWPLFG 810
             DS  ED    D         D  +KYNELATKLQGMCKSIK+TLDQHI  EELELWPLF 
Sbjct:   768 DSMMEDIAQTDTVRTDIDNGDCNKKYNELATKLQGMCKSIKITLDQHIFLEELELWPLFD 827

Query:   811 RHFSVEEQDKIVGRIIGSTGAEVLQSMLPWVTSALTQDEQSKLIDTWKHATKNTMFNEWL 870
             +HFS++EQDKIVGRIIG+TGAEVLQSMLPWVTSAL++DEQ++++DTWK ATKNTMF+EWL
Sbjct:   828 KHFSIQEQDKIVGRIIGTTGAEVLQSMLPWVTSALSEDEQNRMMDTWKQATKNTMFDEWL 887

Query:   871 DECWKGPHESSFLTETPDANISHKDSDLHESLDQSDLMFKPGWKDIFRMNQNELEAEIRK 930
             +ECWKG  +SS  TET   +   KD+D  E LDQS  +FKPGWKDIFRMNQNELEAEIRK
Sbjct:   888 NECWKGSPDSSS-TETSKPS-PQKDNDHQEILDQSGELFKPGWKDIFRMNQNELEAEIRK 945

Query:   931 VYRDPTLDPRRKAYLAQNLMTSRWIATQQKLPQATAGESSKGEEGLDCYASYRDPEKQVF 990
             VY+D TLDPRRK YL QN  TSRWIA QQKLP+  A  +  G+  L C  S+RDPEKQ++
Sbjct:   946 VYQDSTLDPRRKDYLVQNWRTSRWIAAQQKLPKE-AETAVNGDVELGCSPSFRDPEKQIY 1004

Query:   991 GCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTP 1050
             GCEHYKRNCK+RAACC +LFTCRFCHDK SDHSMDRK  +EM+CM CLK+Q +GP CTTP
Sbjct:  1005 GCEHYKRNCKLRAACCDQLFTCRFCHDKVSDHSMDRKLVTEMLCMRCLKVQPVGPICTTP 1064

Query:  1051 SCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKLLNH 1110
             SC+G  MAK+YC+ICK FDDER VYHCPFCNLCRVG GLG+DFFHCMTCNCCLG+KL+NH
Sbjct:  1065 SCDGFPMAKHYCSICKLFDDERAVYHCPFCNLCRVGEGLGIDFFHCMTCNCCLGMKLVNH 1124

Query:  1111 KCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMA 1170
             KCLEK LETNCPICC+FLFTSSE VRALPCGHYMH ACFQAYTCSHYTCPIC KSLGDMA
Sbjct:  1125 KCLEKSLETNCPICCEFLFTSSEAVRALPCGHYMHSACFQAYTCSHYTCPICGKSLGDMA 1184

Query:  1171 IYFGMIDXXXXXXXXXXXYRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSYNTRLIKND 1230
             +YFGM+D           Y+N+ QDILCNDCE+KG  RFHWLYHKCG CGSYNTR+IK++
Sbjct:  1185 VYFGMLDALLAAEELPEEYKNRCQDILCNDCERKGTTRFHWLYHKCGSCGSYNTRVIKSE 1244

Query:  1231 TTVSNSSTS 1239
             T   + STS
Sbjct:  1245 TIPPDCSTS 1253
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0010106 "cellular response to iron ion starvation" evidence=IEP
TAIR|locus:2011266 AT1G18910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027176 AT1G74770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC2F3.16 SPAC2F3.16 "ubiquitin-protein ligase E3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|J9NZR5 RCHY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ASPGD|ASPL0000053938 AN10185 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q96PM5 RCHY1 "RING finger and CHY zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1359180 Rchy1 "ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1915348 Rchy1 "ring finger and CHY zinc finger domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A4IFE2 RCHY1 "RCHY1 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00120460
hypothetical protein (1251 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1241
cd12108130 cd12108, Hr-like, Hemerythrin-like domain 7e-31
pfam0549574 pfam05495, zf-CHY, CHY zinc finger 3e-26
cd12108130 cd12108, Hr-like, Hemerythrin-like domain 4e-25
cd12108130 cd12108, Hr-like, Hemerythrin-like domain 8e-14
pfam01814129 pfam01814, Hemerythrin, Hemerythrin HHE cation bin 1e-10
pfam1363946 pfam13639, zf-RING_2, Ring finger domain 3e-09
cd0016245 cd00162, RING, RING-finger (Really Interesting New 3e-05
COG5243491 COG5243, HRD1, HRD ubiquitin ligase complex, ER me 5e-05
cd12109158 cd12109, Hr_FBXL5, Hemerythrin-like domain of FBXL 9e-05
smart0018440 smart00184, RING, Ring finger 2e-04
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 3e-04
COG3945189 COG3945, COG3945, Uncharacterized conserved protei 0.002
pfam0009740 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING 0.003
pfam01814129 pfam01814, Hemerythrin, Hemerythrin HHE cation bin 0.004
>gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain Back     alignment and domain information 
 Score =  117 bits (296), Expect = 7e-31
 Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 2/125 (1%)

Query: 48  FHKAVRNELDALHQLAMNFATGHRVDILSLSERYRFLHSVYKHHSNAEDEVIFPALDIRV 107
            H+A+R EL  L +LA   A G   D  +L+ER+RFL +   HH  AE+E++FPAL  RV
Sbjct: 6   EHRAIRRELGRLARLAGALAAGGPDDARALAERFRFLATELHHHHTAEEELLFPALRERV 65

Query: 108 K--NVARKYSLEHEGESNLFDHLFQLLNSYTQNDESFPKELASCSRALQTSINQHMSKEE 165
               V      EH     L   L  LL +    D    +ELA+   AL+T++ +H+ +EE
Sbjct: 66  PLAAVLDALEAEHAEIDELLARLEALLPALLAGDAEDAEELAAALEALRTALREHLDEEE 125

Query: 166 QQVFP 170
           +++FP
Sbjct: 126 EELFP 130

Hemerythrin (Hr) like domains have the same four alpha helix bundle and a similar, but slightly different active site structure than hemerythrin. They are non-heme diiron binding proteins mainly found in bacteria and eukaryotes. Like Hr, they may be involved in oxygen transport or like human FBXL5 (F-box and leucine-rich repeat protein 5), a member of this group, play a role in cellular iron homeostasis. Length = 130
>gnl|CDD|218608 pfam05495, zf-CHY, CHY zinc finger Back     alignment and domain information
>gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain Back     alignment and domain information
>gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain Back     alignment and domain information
>gnl|CDD|216718 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain Back     alignment and domain information
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain Back     alignment and domain information
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|213984 cd12109, Hr_FBXL5, Hemerythrin-like domain of FBXL5-like proteins Back     alignment and domain information
>gnl|CDD|214546 smart00184, RING, Ring finger Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|226454 COG3945, COG3945, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|216718 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1241
KOG1940276 consensus Zn-finger protein [General function pred 100.0
PF1459961 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A. 99.88
PF0549571 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc 99.81
PF01814133 Hemerythrin: Hemerythrin HHE cation binding domain 99.37
COG3945189 Uncharacterized conserved protein [Function unknow 99.32
PRK10992220 iron-sulfur cluster repair di-iron protein; Provis 99.17
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 99.08
TIGR03652216 FeS_repair_RIC iron-sulfur cluster repair di-iron 99.08
COG2846221 Regulator of cell morphogenesis and NO signaling [ 98.98
PRK13276224 cell wall biosynthesis protein ScdA; Provisional 98.97
COG4357105 Zinc finger domain containing protein (CHY type) [ 98.93
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 98.91
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 98.83
PF01814133 Hemerythrin: Hemerythrin HHE cation binding domain 98.79
COG5243491 HRD1 HRD ubiquitin ligase complex, ER membrane com 98.76
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 98.73
COG519488 APC11 Component of SCF ubiquitin ligase and anapha 98.62
KOG0804 493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 98.61
KOG149384 consensus Anaphase-promoting complex (APC), subuni 98.49
cd0016245 RING RING-finger (Really Interesting New Gene) dom 98.41
PHA02929238 N1R/p28-like protein; Provisional 98.39
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 98.37
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.28
PRK10992220 iron-sulfur cluster repair di-iron protein; Provis 98.24
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 98.21
TIGR03652216 FeS_repair_RIC iron-sulfur cluster repair di-iron 98.06
KOG2930114 consensus SCF ubiquitin ligase, Rbx1 component [Po 98.05
PF1463444 zf-RING_5: zinc-RING finger domain 98.04
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 97.99
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 97.91
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 97.89
KOG0802 543 consensus E3 ubiquitin ligase [Posttranslational m 97.83
PHA02926242 zinc finger-like protein; Provisional 97.76
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 97.76
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 97.76
PRK13276224 cell wall biosynthesis protein ScdA; Provisional 97.72
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 97.62
smart0050463 Ubox Modified RING finger domain. Modified RING fi 97.54
COG2846221 Regulator of cell morphogenesis and NO signaling [ 97.49
KOG0825 1134 consensus PHD Zn-finger protein [General function 97.43
COG3945189 Uncharacterized conserved protein [Function unknow 97.36
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 97.35
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 97.3
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 97.27
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 97.24
TIGR00570 309 cdk7 CDK-activating kinase assembly factor MAT1. A 97.17
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 97.16
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.12
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 97.12
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 96.96
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 96.91
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 96.87
KOG0827 465 consensus Predicted E3 ubiquitin ligase [Posttrans 96.8
KOG1940276 consensus Zn-finger protein [General function pred 96.72
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 96.66
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 96.58
COG2461409 Uncharacterized conserved protein [Function unknow 96.55
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 96.28
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 96.15
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 96.08
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 96.07
COG52191525 Uncharacterized conserved protein, contains RING Z 95.76
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 95.63
KOG1941518 consensus Acetylcholine receptor-associated protei 95.57
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 95.34
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 94.55
KOG1645 463 consensus RING-finger-containing E3 ubiquitin liga 94.46
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 94.46
KOG4445 368 consensus Uncharacterized conserved protein, conta 94.2
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 94.02
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 93.53
KOG0311 381 consensus Predicted E3 ubiquitin ligase [Posttrans 93.45
KOG1701468 consensus Focal adhesion adaptor protein Paxillin 93.31
KOG0824 324 consensus Predicted E3 ubiquitin ligase [Posttrans 92.96
KOG0297 391 consensus TNF receptor-associated factor [Signal t 92.95
KOG3970 299 consensus Predicted E3 ubiquitin ligase [Posttrans 92.79
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 92.51
PF10367109 Vps39_2: Vacuolar sorting protein 39 domain 2; Int 92.5
PF1290647 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A. 91.75
KOG3268234 consensus Predicted E3 ubiquitin ligase [Posttrans 91.61
KOG3039303 consensus Uncharacterized conserved protein [Funct 91.53
KOG03091081 consensus Conserved WD40 repeat-containing protein 90.46
COG5175 480 MOT2 Transcriptional repressor [Transcription] 90.01
COG5152259 Uncharacterized conserved protein, contains RING a 89.77
KOG2272332 consensus Focal adhesion protein PINCH-1, contains 89.36
KOG3800 300 consensus Predicted E3 ubiquitin ligase containing 89.27
KOG4739 233 consensus Uncharacterized protein involved in syna 89.24
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 89.09
KOG1002 791 consensus Nucleotide excision repair protein RAD16 89.0
PF04641260 Rtf2: Rtf2 RING-finger 88.78
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 87.75
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 87.14
KOG2034911 consensus Vacuolar sorting protein PEP3/VPS18 [Int 86.85
PF05883134 Baculo_RING: Baculovirus U-box/Ring-like domain; I 86.81
KOG0269839 consensus WD40 repeat-containing protein [Function 85.66
PRK00808150 hypothetical protein; Provisional 85.6
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 84.84
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 84.78
KOG2660 331 consensus Locus-specific chromosome binding protei 84.7
PRK1489059 putative Zn-ribbon RNA-binding protein; Provisiona 84.18
TIGR00100115 hypA hydrogenase nickel insertion protein HypA. In 83.87
PHA02862156 5L protein; Provisional 83.82
PRK00564117 hypA hydrogenase nickel incorporation protein; Pro 83.57
TIGR02481126 hemeryth_dom hemerythrin-like metal-binding domain 82.53
PF07800162 DUF1644: Protein of unknown function (DUF1644); In 82.16
PRK04023 1121 DNA polymerase II large subunit; Validated 82.14
KOG2114933 consensus Vacuolar assembly/sorting protein PEP5/V 81.94
COG5592171 Uncharacterized conserved protein [Function unknow 81.59
PRK12380113 hydrogenase nickel incorporation protein HybF; Pro 80.89
PF0385450 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc 80.75
KOG2807378 consensus RNA polymerase II transcription initiati 80.35
>KOG1940 consensus Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.8e-61  Score=526.81  Aligned_cols=253  Identities=50%  Similarity=1.084  Sum_probs=241.0

Q ss_pred             CCCCCCCCccCCcCCCccccccccccccccCCcccCchhhcccCCCCCCcccccceeccccccccccCCCCCCCCCCCCc
Q 000878          977 DCYASYRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTPSCNGLS 1056 (1241)
Q Consensus       977 ~~~~~~~~~~~~~~gC~HY~r~ckl~~pcC~k~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~Cc~~~ 1056 (1241)
                      +..+++.|++...+||+||+|+|++++|||+++|+|++||++..+|.++|+.+.+|+||.|.++|++++.|.+   |+..
T Consensus        20 ~~~~~~~d~~~~~~~c~hy~r~~~~~a~ccd~~~~C~hCH~~s~~h~~~r~~v~~~~C~~C~~~q~~~~~c~~---c~~~   96 (276)
T KOG1940|consen   20 SIHSDAEDEIAFPYGCPHYRRNCKSRAPCCDREITCRHCHNESEDHDLDRKTVYELLCMKCRKIQPVGQICSN---CHVE   96 (276)
T ss_pred             hcccccccccccccCCchhhhccccccccccceeeeEEecChhhhcccchhhhhhhhhhhHHhhhhhhhcccc---chhh
Confidence            3467889999999999999999999999999999999999999999999999999999999999999999999   4788


Q ss_pred             ceeEeccccccccCC-CCcccCCCCCccccCCCCCccccccCCccccccccc-ccccccccccCCcccccccccccCCCc
Q 000878         1057 MAKYYCNICKFFDDE-RTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKL-LNHKCLEKCLETNCPICCDFLFTSSET 1134 (1241)
Q Consensus      1057 ~a~y~C~~C~~~d~~-k~~yHC~~CgiCRvg~~l~~~~fhC~~C~~C~s~~l-~~H~C~e~~~~~~CpICle~lf~s~~~ 1134 (1241)
                      +|+|||.+||+|||+ ..||||+.|||||+|.++  +||||++|+.|+++.+ +.|+|+|++++.|||||.|+||++...
T Consensus        97 ~g~~~c~~C~l~dd~~~~~~hC~~C~icr~g~~~--~~fhc~~c~~c~~~~~~~~H~c~e~~~~~ncPic~e~l~~s~~~  174 (276)
T KOG1940|consen   97 LGEYYCLICKLFDDDPSKQYHCDLCGICREGLGL--DFFHCKKCKACLSAYLSNWHKCVERSSEFNCPICKEYLFLSFED  174 (276)
T ss_pred             hhhhcCcccccccccccceecccccccccccccc--chhHHhhhHhHHhhhcccccchhhhcccCCCchhHHHhcccccc
Confidence            999999999999988 699999999999999875  9999999999999999 669999999999999999999999999


Q ss_pred             eEEcCCCCccchhhHHHHHhcCCCCCCCCcccccchhhhhhhHHHHhccCCCHhhhcccceEEcCCCCCCCCccchhhcc
Q 000878         1135 VRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWLYH 1214 (1241)
Q Consensus      1135 ~~~lpCgH~fH~~C~~~wl~~~~~CPiCrk~~~dm~~~~~~lD~~i~~~~~P~ey~~~~~~i~CnDC~~~s~~~fh~lg~ 1214 (1241)
                      +..++|||++|..||.++...+|+||+|.+ ++||..+|+++|.+|+.+|||++|.+++++|+||||+.+++++|||||+
T Consensus       175 ~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~~~~~~~~d~~l~~~~~p~~y~~~~~~i~cndC~~~~~~k~~~l~~  253 (276)
T KOG1940|consen  175 AGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDMSHYFRKLDKELAGSPMPEEYKNKTQDILCNDCGSGTNVKYHILYH  253 (276)
T ss_pred             CCccCcccchHHHHHHHHhccCCCCCcccc-hHHHHHHHHHHHHHHhcCCCCchhhchhheeeccCCCCCCccceehhhh
Confidence            999999999999999999988899999999 9999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCccccccccCCCCCC
Q 000878         1215 KCGFCGSYNTRLIKNDTTVSN 1235 (1241)
Q Consensus      1215 kC~~CgsYNT~~~~~~~~~~~ 1235 (1241)
                      ||+.|+|||||+++.+.....
T Consensus       254 kc~~c~~~~~r~~~~~~~~~~  274 (276)
T KOG1940|consen  254 KCGKCGSYNTRMISDPSKYDP  274 (276)
T ss_pred             hCCCcccceeeeccCCCccCC
Confidence            999999999999985544433

>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A Back     alignment and domain information
>PF05495 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues Back     alignment and domain information
>COG3945 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein Back     alignment and domain information
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK13276 cell wall biosynthesis protein ScdA; Provisional Back     alignment and domain information
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown] Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein Back     alignment and domain information
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13276 cell wall biosynthesis protein ScdA; Provisional Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG3945 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1940 consensus Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2461 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A Back     alignment and domain information
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>COG5175 MOT2 Transcriptional repressor [Transcription] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK00808 hypothetical protein; Provisional Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional Back     alignment and domain information
>TIGR00100 hypA hydrogenase nickel insertion protein HypA Back     alignment and domain information
>PHA02862 5L protein; Provisional Back     alignment and domain information
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional Back     alignment and domain information
>TIGR02481 hemeryth_dom hemerythrin-like metal-binding domain Back     alignment and domain information
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function Back     alignment and domain information
>PRK04023 DNA polymerase II large subunit; Validated Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5592 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional Back     alignment and domain information
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1241
2k2c_A137 Solution Nmr Structure Of N-Terminal Domain Of Huma 8e-25
2dkt_A143 Solution Structure Of The Chy Zinc Finger Domain Of 6e-24
2k2d_A79 Solution Nmr Structure Of C-Terminal Domain Of Huma 2e-05
2ecm_A55 Solution Structure Of The Ring Domain Of The Ring F 5e-05
2jrj_A52 Solution Structure Of The Human Pirh2 Ring-H2 Domai 3e-04
>pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2a Length = 137 Back     alignment and structure 
Iteration: 1

 Score =  113 bits (282), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 58/129 (44%), Positives = 75/129 (58%), Gaps = 6/129 (4%)
Query: 986  EKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGP 1045
            E+   GCEHY R C ++A CC KL+TCR CHD   DH +DR    E+ C++C KIQ    
Sbjct: 14   ERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQ 73
Query: 1046 NCTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGL 1105
             C   S       +YYC+IC  FD ++  YHC  C +CR+G     DFFHC+ CN CL +
Sbjct: 74   TCEECS---TLFGEYYCDICHLFDKDKKQYHCENCGICRIGP--KEDFFHCLKCNLCLAM 128
Query: 1106 KLLN-HKCL 1113
             L   HKC+
Sbjct: 129  NLQGRHKCI 137
>pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 143 Back     alignment and structure
>pdb|2K2D|A Chain A, Solution Nmr Structure Of C-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2c Length = 79 Back     alignment and structure
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 55 Back     alignment and structure
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain. Northeast Structural Genomics Consortium Target Ht2b Length = 52 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1241
2dkt_A143 Ring finger and CHY zinc finger domain- containing 1e-51
3u9j_A160 F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, i 5e-43
3u9j_A160 F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, i 2e-13
3u9j_A160 F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, i 6e-12
2k2d_A79 Ring finger and CHY zinc finger domain- containing 7e-29
2ecm_A55 Ring finger and CHY zinc finger domain- containing 4e-19
3cax_A369 Uncharacterized protein PF0695; structural genomic 4e-13
3cax_A369 Uncharacterized protein PF0695; structural genomic 1e-06
3cax_A369 Uncharacterized protein PF0695; structural genomic 1e-06
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-13
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 5e-08
2ect_A78 Ring finger protein 126; metal binding protein, st 6e-08
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 8e-08
2p0n_A172 Hypothetical protein NMB1532; structural genomics, 9e-08
2p0n_A172 Hypothetical protein NMB1532; structural genomics, 1e-04
2p0n_A172 Hypothetical protein NMB1532; structural genomics, 1e-04
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 1e-07
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 2e-07
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 3e-07
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 8e-06
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 2e-05
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 3e-05
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 7e-05
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 2e-04
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 6e-04
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 6e-04
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 7e-04
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 8e-04
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 8e-04
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A Length = 143 Back     alignment and structure
 Score =  177 bits (449), Expect = 1e-51
 Identities = 58/143 (40%), Positives = 77/143 (53%), Gaps = 6/143 (4%)

Query: 978  CYASYRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHC 1037
                 R+  +   GCEHY R C ++A CC KL+TCR CHD   DH +DR    E+ C++C
Sbjct: 5    SSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINC 64

Query: 1038 LKIQAIGPNCTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCM 1097
             K+Q     C    C      +YYC+IC  FD ++  YHC  C +CR+G     DFFHC+
Sbjct: 65   EKLQHAQQTCE--DC-STLFGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCL 119

Query: 1098 TCNCCLGLKLL-NHKCLEKCLET 1119
             CN CL   L   HKC+E    +
Sbjct: 120  KCNLCLTTNLRGKHKCIESGPSS 142
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 Back     alignment and structure
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 Back     alignment and structure
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 Back     alignment and structure
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55 Back     alignment and structure
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 Back     alignment and structure
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 Back     alignment and structure
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78 Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91 Back     alignment and structure
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} Length = 172 Back     alignment and structure
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} Length = 172 Back     alignment and structure
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} Length = 172 Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78 Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1241
d2dkta256 g.93.1.1 (A:82-137) RING finger and CHY zinc finge 1e-24
d2dkta174 g.89.1.1 (A:8-81) RING finger and CHY zinc finger 2e-20
d1iyma_55 g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati 1e-06
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 6e-06
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 1e-04
d3dplr188 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S 1e-04
d1ur6b_52 g.44.1.1 (B:) Not-4 N-terminal RING finger domain 2e-04
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 6e-04
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 6e-04
d2baya156 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { 7e-04
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 56 Back     information, alignment and structure

class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.5 bits (238), Expect = 1e-24
 Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 1059 KYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKLL-NHKCLE 1114
            +YYC+IC  FD ++  YHC  C +CR+G     DFFHC+ CN CL   L   HKC+E
Sbjct: 2    EYYCSICHLFDKDKRQYHCESCGICRIGPKE--DFFHCLKCNLCLTTNLRGKHKCIE 56
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 74 Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1241
d2dkta256 RING finger and CHY zinc finger domain-containing 99.72
d2dkta174 RING finger and CHY zinc finger domain-containing 99.27
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 98.62
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 98.58
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 98.47
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.41
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.33
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 98.3
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.25
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 97.94
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 97.85
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 97.65
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 97.54
d2c2la280 STIP1 homology and U box-containing protein 1, STU 97.44
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 97.44
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 97.37
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 97.22
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 96.92
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 96.72
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=5.9e-19  Score=162.26  Aligned_cols=55  Identities=51%  Similarity=1.307  Sum_probs=52.9

Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             16965633465589981037999844337977744301478653335554-4332123
Q 000878         1058 AKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKL-LNHKCLE 1114 (1241)
Q Consensus      1058 ~~y~C~~C~~~dd~k~~yHC~~CgiCRvg~~l~~~~fhC~~C~~C~~~~~-~~H~C~e 1114 (1241)
                      |+|||+|||||||||++||||+|||||||++  ++||||++||+|+++++ ++|+|+|
T Consensus         1 G~YfC~iC~l~dddk~~yHC~~CgiCRvG~~--~~ffHC~~C~~C~~~~l~~~H~CiE   56 (56)
T d2dkta2           1 GEYYCSICHLFDKDKRQYHCESCGICRIGPK--EDFFHCLKCNLCLTTNLRGKHKCIE   56 (56)
T ss_dssp             CSEECSSSCCEECSSSEEEETTTTEEEESCG--GGEEEETTTTEEEEGGGSSSSCCSC
T ss_pred             CCEECCCCCCCCCCCCCCCCCCCCCEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9657873775468887665999980023588--6643267254643754577852369
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure