Citrus Sinensis ID: 000879

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------124
MPVDAASIMYRPLKDLNGIHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRVWELLPEVNYDKSGYELETMEAEAKDSEEEIEVASLKQFGGRDVNKSPHNLNVGIINAHESPKSTLEGQGLLVGSTIPEASSGIDNATDMLSTPSRVSRSHQISGFDNVNITEVNGCHYTGASRDNSHEKTPNSAKVKSDLVPTSKNAEISYHSGSKFCSLNYSRKTPRKSILTMSSGKVDNDVLNIISSKVENAETRTVTACGEIPKRGGELCHEEESIVLPQKRMSNSTGAGSKSQKMSHNAAECNPRSPINYKTPVSETKSSACHSFETGNHLSPGSNGHYTIETATPSTAPNKKPLTPDLPSLKTVTSEALHSEGADRNALETCRGSKESTVASKTDNEDFGMGSVHLDGEAEDAQNLHQDLEGSSAKNRFLVMDKSPRPVNIDSPQVGKDKLIAKPIRKKMVAKKAFGSGHTTNRKGSIYSNKISSLSSPAVCLSREVERANQEKFSSTSELETDPPNLSDEATKEMETTLVAKCGDNSGDGIKTMDDETEAPDEKYEIEFEKMLNNEKSEGVQSIHKEDTMMKRVPGVGHEAHDSMVYGRDGITGKEVMNAEVGMTVSGKRFDLDESTSKMDGMKSKRKIRPSDKANGNVSADKETVESWDDEAEAADEKVGNVFEEALNDEKPEGVELIHKEDAELKRIPGAGHEAHDSVVCRHDEITGKEGINAQVRTTLSGEMFDLDESNSKRDGTKCKINRAKKRPSGKASLKTLSADKGTVESKKDVVGEENLNGEKNEECREKEKNVLLPRSKTRVITASASKVGSSDEVEKENRPVADEGQTSSPGVGKSILKSMKVSMKNKIGGNVNSNSIPLDKSLNKLDKSLNKLKDEPIWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTRFLNSGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQYNTHAWAEKSLSNLLSKAEEIVMDLTPPNDYDTDKITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRSRINPSKRTSS
cccccccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHccEEEcccccccccEEEEcccccHHHHHHHccccccEEcHHHHHHHHHcccccccccccccccHHHHHHHHHccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHcccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHccEEEEEcccccccEEEEEccccccHHHHHHHHHccccEEcHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEcccccccHHHHHHHHHHcccEEEcccccccccccccccEEEEccccccccHHHHHHHHccccEEEHHHHHHHHcccccccccHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEcccccccccEEEcccccccccccccEEcccccccccccccccccccccccccccccccccc
cccccccEEEcccccccccccccEEEEEEEccccccHHHHHHHHHHHccEEccccccccEEEEEEEccccHHHHHHHHHccccEEcHHHHHHHHHHcccccccccccccccHHHHHHHcccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccEccccccccccccEEcccccccccccccccccccccccccccHHEEEcccEEEEccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccHHHHHcccccccccccccEcccccccccccccHHHcHHHHHHccccccccccccccccEEcccccccccccccccccccHHHHcccccccccccccccccccccHHHcccccccccccHccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEcccccccccEEEEEccccccHHHHHHHHcccEEEcHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEccccccHHHHHHHHHccccEEEccccccHHcccccccEEEEccccccccHHHHHHHHcccccccHHHHHHHHHccccccccccccccHHHHHHcHHHHHHHHHHHHHHcccccccccccccEEEccccccccEEEEEcccccccccccEEEEccccccccccccccccccccccccccccccccc
MPVDAAsimyrplkdlngihgaNSLVMCLtgyqrqdrEDIMTLVRLMgsqfskplvanKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRVWEllpevnydksgyELETMEAEAKDSEEEIEVASLKqfggrdvnksphnlnvgiinahespkstlegqgllvgstipeassgidnatdmlstpsrvsrshqisgfdnvnitevngchytgasrdnshektpnsakvksdlvptsknaeisyhsgskfcslnysrktprksiltmssgkvdnDVLNIISSKvenaetrtvtacgeipkrggelcheeesivlpqkrmsnstgagsksqkmshnaaecnprspinyktpvsetkssachsfetgnhlspgsnghytietatpstapnkkpltpdlpslktvtsealhsegadrnaletcrgskestvasktdnedfgmgsvhldgeaedAQNLHqdlegssaknrflvmdksprpvnidspqvgkdkliAKPIRKKMVAkkafgsghttnrkgsiysnkisslsspavcLSREVeranqekfsstseletdppnlsdeATKEMETTLVAKcgdnsgdgiktmddeteapdeKYEIEFEKMLNNeksegvqsihkedtmmkrvpgvgheahdsmvygrdgitgkevmnaevgmtvsgkrfdldestskmdgmkskrkirpsdkangnvsadketvESWDDEAEAADEKVGNVFEEalndekpegvELIHKEDaelkripgagheahdsvvcrhdeitgkegiNAQVRTTLsgemfdldesnskrdgtkckinrakkrpsgkasLKTLsadkgtveskkdvvgeenlngekneeCREKEknvllprsktrVITAsaskvgssdevekenrpvadegqtsspgvgKSILKSMKVSMKnkiggnvnsnsipldkslNKLDKSLnklkdepiwfilsghrlqRKEFQVVIRHLKgrlcrdshqwsyqathfiapeiRRTEKFFAAAASGRWILKTDYLSACSQAGKFlleepyewhknglsedgainleapRKWRLLRertghgafhgMRIIVygdciappldTLKRVVKagdgnilatsppytrflnsgvdfavvspgmprvDLWVQEFLkheipcvvADYLVEFvckpgyslerhvQYNTHAWAEKSLSNLLSKAEEIVmdltppndydtdkitcqacgcsdrgevmlicgdesgsvgcgvgmhidccdpplesvpeedwfcptctrsrinpskrtss
MPVDAASIMYRPLKDLNGIHGANSLVMCLTGYQRQDREDIMTLVRLMGSqfskplvanKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRVWELLPEVNYDKSGYELETMEAEAKDSEEEIEVASLkqfggrdvnksPHNLNVGIINAHESPKSTLEGQGLLVGSTIPEASSGIDNATDMLSTPSRVSRSHQISGFDNVNITEVNGCHYTGasrdnshektpnsakvksdlvptSKNAEisyhsgskfcslnysrKTPRKSILtmssgkvdndvLNIIsskvenaetrtvtacgeipkrggelcHEEESIVLPQKRMSNSTGAGSKSQKMSHNAAECNPRSPINYKTPVSETKSSACHSFETgnhlspgsnGHYTIETATPSTAPNKKPLTPDLPSLKTVTSEalhsegadrnaletcrgskestvasktdnedFGMGSVHLDGEAEDAQNLHQDLEGSSAKNRFLVMDKsprpvnidspqvgkdkliakPIRKKMvakkafgsghttnrkgsiysnkisslssPAVCLSREVERANqekfsstseletdppnlSDEATKEMETTLVakcgdnsgdgiktmddeteaPDEKYEIEFEKMLNNEksegvqsihkedTMMKRVPGVGHEAHDSMVYGRDGITGKEVMNAevgmtvsgkrfdldestskmdgmkskrkirpsdkangnvsadketvesWDDEAEAADEKVGNVFEealndekpegVELIHKEDAELKripgagheahdSVVCRHDeitgkeginaqvRTTLSgemfdldesnskrdgtkckinrakkrpsgkaslktlsadkgtveskkdvvgeenlngekneecrekeknvllprsktrvitasaskvgssdevekenrpvadegqtsspgvgkSILKSMKVSMKNKiggnvnsnsipldkSLNKLDKSLNKLKDEPIWfilsghrlqrKEFQVVIRHLKGrlcrdshqwSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHknglsedgainlEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDgnilatsppytrflnSGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQYNTHAWAEKSLSNLLSKAEEIVMDLTPPNDYDTDKITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEdwfcptctrsrinpskrtss
MPVDAASIMYRPLKDLNGIHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRVWELLPEVNYDKSGYELetmeaeakdseeeievaSLKQFGGRDVNKSPHNLNVGIINAHESPKSTLEGQGLLVGSTIPEASSGIDNATDMLSTPSRVSRSHQISGFDNVNITEVNGCHYTGASRDNSHEKTPNSAKVKSDLVPTSKNAEISYHSGSKFCSLNYSRKTPRKSILTMSSGKVDNDVLNIISSKVENAETRTVTACGEIPKRGGELCHEEESIVLPQKRMSNSTGAGSKSQKMSHNAAECNPRSPINYKTPVSETKSSACHSFETGNHLSPGSNGHYTIETATPSTAPNKKPLTPDLPSLKTVTSEALHSEGADRNALETCRGSKESTVASKTDNEDFGMGSVHLDGEAEDAQNLHQDLEGSSAKNRFLVMDKSPRPVNIDSPQVGKDKLIAKPIRKKMVAKKAFGSGHTTNRKGsiysnkisslssPAVCLSREVERANQEKFSSTSELETDPPNLSDEATKEMETTLVAKCGDNSGDGIKTMDDETEAPDEKYEIEFEKMLNNEKSEGVQSIHKEDTMMKRVPGVGHEAHDSMVYGRDGITGKEVMNAEVGMTVSGKRFDLDESTSKMDGMKSKRKIRPSDKANGNVSADKETVESWddeaeaadeKVGNVFEEALNDEKPEGVELIHKEDAELKRIPGAGHEAHDSVVCRHDEITGKEGINAQVRTTLSGEMFDLDESNSKRDGTKCKINRAKKRPSGKASLKTLSADKGTVESKKDVVgeenlngekneecrekeknVLLPRSKTRVITASASKVGSSDEVEKENRPVADEGQTSSPGVGKSILKSMKVSMKNKIGGNVNSNSIPldkslnkldkslnklkdEPIWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTRFLNSGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQYNTHAWAEKSLSNLLSKAEEIVMDLTPPNDYDTDKITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRSRINPSKRTSS
*******IMYRPLKDLNGIHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRVWELLPEVNYDKSGY**************************************GI*************************************************GFDNVNITEVNGCHYT**************************************C**********************NDVLNIISSKVE***TRTVTACGEI*************************************************************************************************************************************************************************************************************************************************************************************************************************************************Y****I***********************************************************************************************************VVCRHDEIT*********************************************************************************************************************************************************************LKDEPIWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTRFLNSGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQYNTHAWAEKSLSNLLSKAEEIVMDLTPPNDYDTDKITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCT************
*PVDAASIMYRPLKDLNGIHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRVWELLPEVNYDKSGYELETMEAEAKDS*********************************************************************V******************************************DLVPTSKNAEISYHSGSKFCSLNYSRKTPRKS***********D********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LNKLKDEPIWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHKNGLSEDGAINLE***************AFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTRFLNSGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQYNTHAWAEKSL*********************TDKITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCP***************
MPVDAASIMYRPLKDLNGIHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRVWELLPEVNYDKSGYELE************IEVASLKQFGGRDVNKSPHNLNVGIINAHESPKSTLEGQGLLVGSTIPEASSGIDNATDM***********QISGFDNVNITEVNGCHYTGAS******************VPTSKNAEISYHSGSKFCSLNYSRKTPRKSILTMSSGKVDNDVLNIISSKVENAETRTVTACGEIPKRGGELCHEEESIVLPQKR********************CNPRSPINYKT***********SFETGNHLSPGSNGHYTIETATPSTAPNKKPLTPDLPSLKTVTSEALHSEGADRNALETCRGSKESTVASKTDNEDFGMGSVHLDGEAEDAQNLHQDLEGSSAKNRFLVMDKSPRPVNIDSPQVGKDKLIAKPIRKKMVAKKAFGSGHTTNRKGSIYSNKISSLSSPAVCLSR***********************SDEATKEMETTLVAKCGDNSGDGIKTMDDETEAPDEKYEIEFEKMLNNEKSEGVQSIHKEDTMMKRVPGVGHEAHDSMVYGRDGITGKEVMNAEVGMTVSGKRFDLDES****************************************DEKVGNVFEEALNDEKPEGVELIHKEDAELKRIPGAGHEAHDSVVCRHDEITGKEGINAQVRTTLSGEMFDLDESNSKRDGTKCKIN***********LKTLSADKGTVESKKDVVGEENLNGEKNEECREKEKNVLLPRSKTRVIT****************************GVGKSILKSMKVSMKNKIGGNVNSNSIPLDKSLNKLDKSLNKLKDEPIWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTRFLNSGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQYNTHAWAEKSLSNLLSKAEEIVMDLTPPNDYDTDKITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRSR*********
*PVDAASIMYRPLKDLNGIHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRVWELLPEVNYDKSGYELETMEAEA******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************NLSDEATKEMETTLVAK***********************EIE*EKMLN*EKSEGVQSIHKEDTMMKRV**********************************************************************************************************************************************************************************************************************************************************************************************************KLKDEPIWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTRFLNSGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQYNTHAWAEKSLSNLLSKAEEIVMDLTPPNDYDTDKITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCT************
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MPVDAASIMYRPLKDLNGIHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRVWELLPEVNxxxxxxxxxxxxxxxxxxxxxxxxxxxxQFGGRDVNKSPHNLNVGIINAHESPKSTLEGQGLLVGSTIPEASSGIDNATDMLSTPSRVSRSHQISGFDNVNITEVNGCHYTGASRDNSHEKTPNSAKVKSDLVPTSKNAEISYHSGSKFCSLNYSRKTPRKSILTMSSGKVDNDVLNIISSKVENAETRTVTACGEIPKRGGELCHEEESIVLPQKRMSNSTGAGSKSQKMSHNAAECNPRSPINYKTPVSETKSSACHSFETGNHLSPGSNGHYTIETATPSTAPNKKPLTPDLPSLKTVTSEALHSEGADRNALETCRGSKESTVASKTDNEDFGMGSVHLDGEAEDAQNLHQDLEGSSAKNRFLVMDKSPRPVNIDSPQVGKDKLIAKPIRKKMVAKKAFGSGHTTNRKGSIYSNKISSLSSPAVCLSREVERANQEKFSSTSELETDPPNLSDEATKEMETTLVAKCGDNSGDGIKTMDDETEAPDEKYEIEFEKMLNNEKSEGVQSIHKEDTMMKRVPGVGHEAHDSMVYGRDGITGKEVMNAEVGMTVSGKRFDLDESTSKMDGMKSKRKIRPSDKANGNVSADKETVESWDDEAEAADEKVGNVFEEALNDEKPEGVELIHKEDAELKRIPGAGHEAHDSVVCRHDEITGKEGINAQVRTTLSGEMFDLDESNSKRDGTKCKINRAKKRPSGKASLKTLSADKGTVESKKDVVGEENLNGEKNEECREKEKNVLLPRSKTRVITASASKVGSSDEVEKENRPVADEGQTSSPGVGKSILKSMKVSMKNKIGGNVNSNSIPLDKSLNKLDKSLNKLKDEPIWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTRFLNSGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQYNTHAWAEKSLSNLLSKAEEIVMDLTPPNDYDTDKITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRSRINPSKRTSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1239 2.2.26 [Sep-21-2011]
O042511329 BRCT domain-containing pr yes no 0.145 0.135 0.606 1e-110
Q800K61513 DNA topoisomerase 2-bindi N/A no 0.147 0.120 0.285 3e-14
Q7ZZY31513 DNA topoisomerase 2-bindi N/A no 0.147 0.120 0.285 3e-14
A6QR20 1055 Ankyrin repeat domain-con yes no 0.086 0.101 0.362 4e-12
Q9BQI6 1058 Ankyrin repeat domain-con yes no 0.097 0.114 0.358 1e-11
Q8R3P9 1054 Ankyrin repeat domain-con yes no 0.153 0.180 0.283 1e-11
Q6ZQF01515 DNA topoisomerase 2-bindi no no 0.166 0.135 0.256 3e-11
A6H619 1682 PHD and RING finger domai no no 0.046 0.033 0.428 1e-10
Q925471522 DNA topoisomerase 2-bindi no no 0.163 0.133 0.252 2e-10
Q63625 1685 PHD and RING finger domai no no 0.042 0.031 0.423 2e-09
>sp|O04251|Y4211_ARATH BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana GN=At4g02110 PE=1 SV=3 Back     alignment and function desciption
 Score =  400 bits (1029), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 182/300 (60%), Positives = 225/300 (75%)

Query: 861  VGSSDEVEKENRPVADEGQTSSPGVGKSILKSMKVSMKNKIGGNVNSNSIPLDKSLNKLD 920
            VG +   EKEN  V +E +    G  +S +   KV+   K G      S  L  +     
Sbjct: 1028 VGDNSAKEKENIAVDNESRKVGSGGDQSPVARKKVAKSAKTGTKAEKESKQLRVNPLASR 1087

Query: 921  KSLNKLKDEPIWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEK 980
            K     + EP +FI+SG R QR E+Q +IR LKG+ CRDSHQWSYQATHFIAPEIRRTEK
Sbjct: 1088 KVFQDQEHEPKFFIVSGPRSQRNEYQQIIRRLKGKCCRDSHQWSYQATHFIAPEIRRTEK 1147

Query: 981  FFAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLRERT 1040
            FFAAAASG WILKTDY++   +AGK L EEPYEWH +GLS DGAINLE+P+KWRL+RE+T
Sbjct: 1148 FFAAAASGSWILKTDYVADSKEAGKLLQEEPYEWHSSGLSADGAINLESPKKWRLVREKT 1207

Query: 1041 GHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTRFLNSGVDFAVVSPGMP 1100
            GHGA +G+RI+VYGDC  P LDTLKR VKAGDG ILAT+PPYTRFLN   DFA++SPGMP
Sbjct: 1208 GHGALYGLRIVVYGDCTIPCLDTLKRAVKAGDGTILATAPPYTRFLNQNTDFALISPGMP 1267

Query: 1101 RVDLWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQYNTHAWAEKSLSNLLSKAEEIV 1160
            R D+W+QEF++HEIPCV++DYLVE+VCKPGY+L++HV YNT++WAEKS + +  +A+  V
Sbjct: 1268 RDDVWIQEFIRHEIPCVLSDYLVEYVCKPGYALDKHVLYNTNSWAEKSFNKMQLRADLCV 1327

Arabidopsis thaliana (taxid: 3702)
>sp|Q800K6|TOB1A_XENLA DNA topoisomerase 2-binding protein 1-A OS=Xenopus laevis GN=topbp1-A PE=1 SV=2 Back     alignment and function description
>sp|Q7ZZY3|TOB1B_XENLA DNA topoisomerase 2-binding protein 1-B OS=Xenopus laevis GN=topbp1-B PE=2 SV=1 Back     alignment and function description
>sp|A6QR20|ANR32_BOVIN Ankyrin repeat domain-containing protein 32 OS=Bos taurus GN=ANKRD32 PE=2 SV=2 Back     alignment and function description
>sp|Q9BQI6|ANR32_HUMAN Ankyrin repeat domain-containing protein 32 OS=Homo sapiens GN=ANKRD32 PE=1 SV=2 Back     alignment and function description
>sp|Q8R3P9|ANR32_MOUSE Ankyrin repeat domain-containing protein 32 OS=Mus musculus GN=Ankrd32 PE=2 SV=3 Back     alignment and function description
>sp|Q6ZQF0|TOPB1_MOUSE DNA topoisomerase 2-binding protein 1 OS=Mus musculus GN=Topbp1 PE=1 SV=2 Back     alignment and function description
>sp|A6H619|PHRF1_MOUSE PHD and RING finger domain-containing protein 1 OS=Mus musculus GN=Phrf1 PE=1 SV=2 Back     alignment and function description
>sp|Q92547|TOPB1_HUMAN DNA topoisomerase 2-binding protein 1 OS=Homo sapiens GN=TOPBP1 PE=1 SV=3 Back     alignment and function description
>sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protein 1 OS=Rattus norvegicus GN=Phrf1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1239
449436751 1372 PREDICTED: uncharacterized protein LOC10 0.928 0.838 0.399 0.0
3565366951118 PREDICTED: uncharacterized protein LOC10 0.832 0.923 0.394 0.0
147827541 1391 hypothetical protein VITISV_036193 [Viti 0.432 0.385 0.603 0.0
3594799421314 PREDICTED: BRCT domain-containing protei 0.412 0.388 0.604 1e-173
2240644941221 predicted protein [Populus trichocarpa] 0.407 0.413 0.586 1e-167
297743963390 unnamed protein product [Vitis vinifera] 0.300 0.953 0.723 1e-166
2241310121282 predicted protein [Populus trichocarpa] 0.356 0.344 0.643 1e-166
357442293 1346 BRCT domain-containing protein [Medicago 0.401 0.369 0.556 1e-155
125543543 1412 hypothetical protein OsI_11217 [Oryza sa 0.240 0.211 0.653 1e-123
115452551 1462 Os03g0304400 [Oryza sativa Japonica Grou 0.240 0.203 0.653 1e-123
>gi|449436751|ref|XP_004136156.1| PREDICTED: uncharacterized protein LOC101219784 [Cucumis sativus] Back     alignment and taxonomy information
 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/1333 (39%), Positives = 729/1333 (54%), Gaps = 182/1333 (13%)

Query: 4    DAASIMYRPLKDLNGIHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHL 63
            DA S++YRPL++LNGI GA SLVMCLTGYQRQDR+D+MT+V L+G+QFSKPLVANKVTHL
Sbjct: 91   DATSVLYRPLRELNGIPGAKSLVMCLTGYQRQDRDDVMTMVGLIGAQFSKPLVANKVTHL 150

Query: 64   ICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRVWELLPEVNYDKSGYELETMEAEAKDSE 123
            ICYKFEG+KYELAK++++IKLVNHRWLED LR W LLPE NY+ SGY++E +EAEAKDSE
Sbjct: 151  ICYKFEGDKYELAKRLRTIKLVNHRWLEDSLREWMLLPESNYNISGYDMEMLEAEAKDSE 210

Query: 124  EEIEVASLKQFGGRDVNKSPHNLNVGIINAHESPKSTLEGQGLLVGSTIPEASSGIDNAT 183
            EE      K F  R+  KSP  +  G+   H +          ++ +T+P AS  +D  T
Sbjct: 211  EESNSGITKHFAMRNT-KSPDKMKFGL---HSTS---------VISNTVP-ASKTLDERT 256

Query: 184  ------DMLSTPSRVSRSHQISGFDNVNITEVNG--CHYTGASRD-------NSHEKTPN 228
                   ML+ P+  +       FD  +  EV G  C               N H  T  
Sbjct: 257  SFSDTKSMLTVPTTNTEFIPSGKFDKYD--EVRGPICQEVDVFSTPWDSVPFNMHTTTSE 314

Query: 229  S--AKVKSDLVPTSKNAEISYHSGSKFCSLNYSRKTPRKSILTMSSGK------------ 274
            S   KVK++ V +  NA  S     + C+ +YSR+TP KS L + SG+            
Sbjct: 315  SEKQKVKNEAVTSPSNAARS----PQLCATSYSRRTPLKSPLPLFSGERLERADASCKIA 370

Query: 275  ----VDNDVLNIISSKVENAETRTVTACGEIPKRGGELCHEEESIV-LPQKRMSNSTGAG 329
                 D   +++   K+E     T +   +   +G +L    +S   LP K+ S+ +   
Sbjct: 371  TGEIKDAIGVDVSLEKMEQVTYATFSGHEQNSSKGTDLFGTGDSNAGLPLKKNSDVSYDV 430

Query: 330  SKSQKMSHNAAECNPRSPINYKTPVSETKSSACHSFETGNHLSPGSNGHYTIETATPSTA 389
             +S  MS N   C   +P   +  +    S    + +  +     +  H     +T +++
Sbjct: 431  PRSHSMSENTKSCTLNNPSTDEKVLGLEMSRVSLNHDDSDKRRAKTLQHS--RGSTDTSS 488

Query: 390  PNKKPLTPDLPSLKTVTSEALHSEGADRNALETCRGSKESTVASKTDNEDFGMGSVHLDG 449
            P KKPL  DLP   +V S    +E     +L+T R   +  ++ K  + D     +H   
Sbjct: 489  PIKKPLICDLPFGNSVRSP---TEDVAGGSLKTPRTPFQ--ISGKDLSPDKPNKPIH--- 540

Query: 450  EAEDAQNL-HQDLEGSSAKNRFLVMDKSPRPVNIDSPQ-----------VGKDKLIAKPI 497
            + E + +L  +  E    +N  L   +S     +   +           +  + L +KP 
Sbjct: 541  DCEISGDLVGKTKETDRQQNGVLAAPESDSGTKVTKTKSASPSSLNSSVLQNNNLQSKPQ 600

Query: 498  RKKMVAKKAFGS----GHTTNRKGSIYSNKISSL--SSPAVCLSREVERANQEKFSSTSE 551
            R KM AKK+ GS    G  ++R GSI S+K +SL  S  + C        N EK  S+S 
Sbjct: 601  RIKMFAKKSLGSRPKLGSGSHR-GSILSSKTTSLNDSVSSSC-------GNGEKLFSSS- 651

Query: 552  LETDPPNLSDEATKEMETTLVAKCGDNSGD-GIKTMDDETEAPDEKYEIEFEKMLNNEKS 610
                P ++S    K ++T   A  GD S    +   DD+T  P+ K + E  +M++ E  
Sbjct: 652  ----PQDVSIGVKKVVKT---ADKGDFSHKYEVMDEDDKTSDPENKEDFE-HRMMDTENF 703

Query: 611  EGVQSIHKEDTMMKRVP-GVGHEAHDSMVYGRDGI---TGKEVMNAEVGMTVSGKRFD-- 664
            + V  I   + + K +  GV   +  S++   D I   T KEV+  +  +++   + D  
Sbjct: 704  KEVPQISDGEKVAKEIASGVKRNSSASVL--NDTIPSGTLKEVIERKAPLSIGNVQLDEL 761

Query: 665  -LDESTSKMD----GMKSKRKIRPSDKANGNVSADKETVESWDDEAEAADEKVGNVFEEA 719
             L++  SK++    G   ++ +  S KA    S   +  ++   E      K   +    
Sbjct: 762  RLEDEKSKLNVGDRGPTEEKMLINSSKAK---SKQGKVCKAPAREKNGKTGKKPQLVAAG 818

Query: 720  LNDEKPEGVELIHKEDAELKRIPGAGHEAHDSVVCRHDEITGKEGINAQVRTTL---SGE 776
            LN E    V  IH   +E   +P    +  D       ++  KE    Q    +   +G 
Sbjct: 819  LNTE----VHTIHDYISEKVNVPCEAMDEDDKTF----DVENKEADFEQQMMDMENFNGV 870

Query: 777  MFDLDESNSKRD---GTKCKINRAKK---------------RPSGKASLKTLSADKGTVE 818
               +D+   +++   G KC  N + +                P    S+  +  D+ ++E
Sbjct: 871  PLMIDDDKLEKEIASGVKC--NNSSRVLDDTIPSGTLEEVIEPKAPVSIGNVQLDELSLE 928

Query: 819  SKKDV--VGEENLNGE---KNEECREKEKNVL-LPRSKTRVITASASKV---GSSDEV-- 867
             ++    VG+ +   E   KN + + K+  V   P  K  V T    ++   G + EV  
Sbjct: 929  DEQSKLNVGDRSPTEEKMLKNSKEKSKQGKVCKAPSRKKNVKTGKKPQLVAAGLNTEVHT 988

Query: 868  ------EKENRPVADEGQTSSPGVG-------KSILKSMKVSMKNKIGGNVNSNSIPLDK 914
                  EKEN P  D G  +S  V        KS  K  KV+ K        S+ I  + 
Sbjct: 989  IPDHKSEKENVP-CDVGDKNSHIVKHFDKITVKSNTKQRKVTKK--------SSEISANS 1039

Query: 915  SLNKLDKSLNKLKDEPIWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPE 974
            S+ ++++ L+++K EP+ FILSGHRL+RKEFQ VI+HL+GR+CRDSHQWSYQATHFIAP+
Sbjct: 1040 SM-EIEEVLSEVKPEPMCFILSGHRLERKEFQKVIKHLRGRVCRDSHQWSYQATHFIAPD 1098

Query: 975  -IRRTEKFFAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHKNGLSEDGAINLEAPRKW 1033
             +RRTEKFF+AAASGRWILK+DYL+  SQAGK L  EPYEW+K GL+EDGAINLEAPRKW
Sbjct: 1099 PVRRTEKFFSAAASGRWILKSDYLTDSSQAGKLLDVEPYEWYKKGLTEDGAINLEAPRKW 1158

Query: 1034 RLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTRFLNSGVDFA 1093
            RLLRE+TGHGAF+GMRII+YG+CIAPPLDTLKR VKAGDG ILATSPPYT+FL SGVDFA
Sbjct: 1159 RLLREKTGHGAFYGMRIIIYGECIAPPLDTLKRAVKAGDGTILATSPPYTKFLKSGVDFA 1218

Query: 1094 VVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQYNTHAWAEKSLSNLL 1153
            VV PGMPR D WVQEFL +EIPCV ADYLVE+VCKPGY L++HV YNTHAWAE+S SNL 
Sbjct: 1219 VVGPGMPRADTWVQEFLNNEIPCVAADYLVEYVCKPGYPLDKHVLYNTHAWAERSFSNLQ 1278

Query: 1154 SKAEEIVMDLTPPNDYDTDKITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPL 1213
            SKAEE+  DL+  +D   + I CQ CG  DRGEVMLICG+E GS GCG+GMH DCC+PPL
Sbjct: 1279 SKAEEVAEDLSSQDDCSDNDIACQECGSRDRGEVMLICGNEDGSSGCGIGMHTDCCNPPL 1338

Query: 1214 ESVPEEDWFCPTC 1226
              +PE DWFC  C
Sbjct: 1339 LDIPEGDWFCSDC 1351

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356536695|ref|XP_003536871.1| PREDICTED: uncharacterized protein LOC100785416 [Glycine max] Back     alignment and taxonomy information
>gi|147827541|emb|CAN62071.1| hypothetical protein VITISV_036193 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359479942|ref|XP_002270203.2| PREDICTED: BRCT domain-containing protein At4g02110-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224064494|ref|XP_002301504.1| predicted protein [Populus trichocarpa] gi|222843230|gb|EEE80777.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297743963|emb|CBI36933.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131012|ref|XP_002320980.1| predicted protein [Populus trichocarpa] gi|222861753|gb|EEE99295.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357442293|ref|XP_003591424.1| BRCT domain-containing protein [Medicago truncatula] gi|355480472|gb|AES61675.1| BRCT domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|125543543|gb|EAY89682.1| hypothetical protein OsI_11217 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|115452551|ref|NP_001049876.1| Os03g0304400 [Oryza sativa Japonica Group] gi|108707717|gb|ABF95512.1| BRCA1 C Terminus domain containing protein, expressed [Oryza sativa Japonica Group] gi|113548347|dbj|BAF11790.1| Os03g0304400 [Oryza sativa Japonica Group] gi|125585975|gb|EAZ26639.1| hypothetical protein OsJ_10544 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1239
TAIR|locus:21321981329 AT4G02110 "AT4G02110" [Arabido 0.249 0.232 0.585 1.2e-153
UNIPROTKB|Q800K61513 topbp1-A "DNA topoisomerase 2- 0.147 0.120 0.285 5.7e-17
UNIPROTKB|Q925471522 TOPBP1 "DNA topoisomerase 2-bi 0.146 0.118 0.255 2e-14
UNIPROTKB|G3X6841524 TOPBP1 "Uncharacterized protei 0.143 0.116 0.266 4.6e-12
UNIPROTKB|Q9BQI6 1058 ANKRD32 "Ankyrin repeat domain 0.161 0.189 0.290 4.7e-12
UNIPROTKB|D6RED9131 ANKRD32 "Ankyrin repeat domain 0.092 0.877 0.325 1.2e-11
MGI|MGI:2145448 1054 Ankrd32 "ankyrin repeat domain 0.159 0.187 0.279 1.3e-11
MGI|MGI:19200181515 Topbp1 "topoisomerase (DNA) II 0.125 0.102 0.283 1.5e-11
RGD|15629491516 Topbp1 "topoisomerase (DNA) II 0.125 0.102 0.289 1.5e-11
RGD|1304857 1059 Ankrd32 "ankyrin repeat domain 0.145 0.169 0.294 7.2e-11
TAIR|locus:2132198 AT4G02110 "AT4G02110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 974 (347.9 bits), Expect = 1.2e-153, Sum P(2) = 1.2e-153
 Identities = 181/309 (58%), Positives = 222/309 (71%)

Query:   849 SKTRVITASASKVGSSDEVEKENRPVADEGQTSSPGVGKSILKSMKVSMKNKIGGNVNSN 908
             S T         VG +   EKEN  V +E +    G  +S +   KV+   K G      
Sbjct:  1016 SGTEATDTVMKDVGDNSAKEKENIAVDNESRKVGSGGDQSPVARKKVAKSAKTGTKAEKE 1075

Query:   909 SIPXXXXXXXXXXXXXXXXXEPIWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQAT 968
             S                   EP +FI+SG R QR E+Q +IR LKG+ CRDSHQWSYQAT
Sbjct:  1076 SKQLRVNPLASRKVFQDQEHEPKFFIVSGPRSQRNEYQQIIRRLKGKCCRDSHQWSYQAT 1135

Query:   969 HFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHKNGLSEDGAINLE 1028
             HFIAPEIRRTEKFFAAAASG WILKTDY++   +AGK L EEPYEWH +GLS DGAINLE
Sbjct:  1136 HFIAPEIRRTEKFFAAAASGSWILKTDYVADSKEAGKLLQEEPYEWHSSGLSADGAINLE 1195

Query:  1029 APRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTRFLNS 1088
             +P+KWRL+RE+TGHGA +G+RI+VYGDC  P LDTLKR VKAGDG ILAT+PPYTRFLN 
Sbjct:  1196 SPKKWRLVREKTGHGALYGLRIVVYGDCTIPCLDTLKRAVKAGDGTILATAPPYTRFLNQ 1255

Query:  1089 GVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQYNTHAWAEKS 1148
               DFA++SPGMPR D+W+QEF++HEIPCV++DYLVE+VCKPGY+L++HV YNT++WAEKS
Sbjct:  1256 NTDFALISPGMPRDDVWIQEFIRHEIPCVLSDYLVEYVCKPGYALDKHVLYNTNSWAEKS 1315

Query:  1149 LSNLLSKAE 1157
              + +  +A+
Sbjct:  1316 FNKMQLRAD 1324
GO:0003713 "transcription coactivator activity" evidence=ISS
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
UNIPROTKB|Q800K6 topbp1-A "DNA topoisomerase 2-binding protein 1-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q92547 TOPBP1 "DNA topoisomerase 2-binding protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3X684 TOPBP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BQI6 ANKRD32 "Ankyrin repeat domain-containing protein 32" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|D6RED9 ANKRD32 "Ankyrin repeat domain-containing protein 32" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2145448 Ankrd32 "ankyrin repeat domain 32" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
MGI|MGI:1920018 Topbp1 "topoisomerase (DNA) II binding protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1562949 Topbp1 "topoisomerase (DNA) II binding protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1304857 Ankrd32 "ankyrin repeat domain 32" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028092001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (1246 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1239
pfam1273863 pfam12738, PTCB-BRCT, twin BRCT domain 6e-20
smart0029278 smart00292, BRCT, breast cancer carboxy-terminal d 3e-11
cd0002772 cd00027, BRCT, Breast Cancer Suppressor Protein (B 2e-09
pfam0053377 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain 7e-09
pfam0062851 pfam00628, PHD, PHD-finger 7e-09
smart0024947 smart00249, PHD, PHD zinc finger 2e-07
pfam0053377 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain 6e-06
cd04718 148 cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homol 3e-05
cd0002772 cd00027, BRCT, Breast Cancer Suppressor Protein (B 6e-05
smart0029278 smart00292, BRCT, breast cancer carboxy-terminal d 0.001
>gnl|CDD|193214 pfam12738, PTCB-BRCT, twin BRCT domain Back     alignment and domain information 
 Score = 84.2 bits (209), Expect = 6e-20
 Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 2/65 (3%)

Query: 25 LVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKL 84
          LV+C++GY   DR+ +  L+  +G+++SK L   KVTHLIC + EGEKYE AKK   I +
Sbjct: 1  LVICVSGYSGDDRKYLQKLIEALGAEYSKDL-TKKVTHLICKRGEGEKYEKAKKWG-IPV 58

Query: 85 VNHRW 89
          V+H W
Sbjct: 59 VSHLW 63

This is a BRCT domain that appears in duplicate in most member sequences. BRCT domains are peptide- and phosphopeptide-binding modules. BRCT domains are present in a number of proteins involved in DNA checkpoint controls and DNA repair. Length = 63
>gnl|CDD|214602 smart00292, BRCT, breast cancer carboxy-terminal domain Back     alignment and domain information
>gnl|CDD|237994 cd00027, BRCT, Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>gnl|CDD|215978 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information
>gnl|CDD|215978 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain Back     alignment and domain information
>gnl|CDD|240069 cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>gnl|CDD|237994 cd00027, BRCT, Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>gnl|CDD|214602 smart00292, BRCT, breast cancer carboxy-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1239
KOG1929811 consensus Nucleotide excision repair factor NEF2, 99.79
KOG4362684 consensus Transcriptional regulator BRCA1 [Replica 99.66
KOG2043896 consensus Signaling protein SWIFT and related BRCT 99.57
KOG3226508 consensus DNA repair protein [Replication, recombi 99.57
PF1273863 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W 99.55
PF0053378 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP 99.27
KOG0825 1134 consensus PHD Zn-finger protein [General function 99.27
cd0002772 BRCT Breast Cancer Suppressor Protein (BRCA1), car 99.11
smart0029280 BRCT breast cancer carboxy-terminal domain. 99.07
PF0053378 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP 98.92
KOG35481176 consensus DNA damage checkpoint protein RHP9/CRB2/ 98.8
cd0002772 BRCT Breast Cancer Suppressor Protein (BRCA1), car 98.76
KOG1244336 consensus Predicted transcription factor Requiem/N 98.73
PF1273863 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W 98.7
PLN03122815 Poly [ADP-ribose] polymerase; Provisional 98.63
PLN03123981 poly [ADP-ribose] polymerase; Provisional 98.56
smart0029280 BRCT breast cancer carboxy-terminal domain. 98.55
KOG3226508 consensus DNA repair protein [Replication, recombi 98.55
KOG4299 613 consensus PHD Zn-finger protein [General function 98.43
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.42
KOG1929811 consensus Nucleotide excision repair factor NEF2, 98.33
KOG1973274 consensus Chromatin remodeling protein, contains P 98.17
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 98.14
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.03
KOG1512381 consensus PHD Zn-finger protein [General function 97.93
KOG1245 1404 consensus Chromatin remodeling complex WSTF-ISWI, 97.86
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 97.59
KOG0383 696 consensus Predicted helicase [General function pre 97.56
KOG0323635 consensus TFIIF-interacting CTD phosphatases, incl 97.56
PRK14350669 ligA NAD-dependent DNA ligase LigA; Provisional 97.51
PRK06195309 DNA polymerase III subunit epsilon; Validated 97.49
PRK06063313 DNA polymerase III subunit epsilon; Provisional 97.44
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 97.43
PRK07956665 ligA NAD-dependent DNA ligase LigA; Validated 97.35
KOG3524 850 consensus Predicted guanine nucleotide exchange fa 97.34
KOG0957707 consensus PHD finger protein [General function pre 97.31
PRK14351689 ligA NAD-dependent DNA ligase LigA; Provisional 97.28
COG0272667 Lig NAD-dependent DNA ligase (contains BRCT domain 97.22
TIGR00575652 dnlj DNA ligase, NAD-dependent. The member of this 97.21
KOG3524850 consensus Predicted guanine nucleotide exchange fa 97.19
KOG0956 900 consensus PHD finger protein AF10 [General functio 97.03
KOG0954 893 consensus PHD finger protein [General function pre 96.93
PLN03122 815 Poly [ADP-ribose] polymerase; Provisional 96.74
KOG4323 464 consensus Polycomb-like PHD Zn-finger protein [Gen 96.6
COG5141 669 PHD zinc finger-containing protein [General functi 96.59
PLN03123 981 poly [ADP-ribose] polymerase; Provisional 96.59
KOG0966881 consensus ATP-dependent DNA ligase IV [Replication 96.2
KOG2043896 consensus Signaling protein SWIFT and related BRCT 96.15
KOG0966881 consensus ATP-dependent DNA ligase IV [Replication 96.12
KOG35481176 consensus DNA damage checkpoint protein RHP9/CRB2/ 95.98
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 95.29
COG5275276 BRCT domain type II [General function prediction o 95.22
KOG1473 1414 consensus Nucleosome remodeling factor, subunit NU 94.93
KOG1246 904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 92.55
PRK05601377 DNA polymerase III subunit epsilon; Validated 92.05
KOG4362684 consensus Transcriptional regulator BRCA1 [Replica 90.6
KOG2481570 consensus Protein required for normal rRNA process 89.19
KOG2481570 consensus Protein required for normal rRNA process 89.04
PRK06063313 DNA polymerase III subunit epsilon; Provisional 88.03
COG5163591 NOP7 Protein required for biogenesis of the 60S ri 87.41
KOG0323635 consensus TFIIF-interacting CTD phosphatases, incl 86.36
PRK06195309 DNA polymerase III subunit epsilon; Validated 83.99
COG5163591 NOP7 Protein required for biogenesis of the 60S ri 83.81
PRK14350669 ligA NAD-dependent DNA ligase LigA; Provisional 83.53
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair] Back     alignment and domain information 
Probab=99.79  E-value=1.6e-18  Score=212.71  Aligned_cols=631  Identities=14%  Similarity=0.050  Sum_probs=400.2

Q ss_pred             CccccCCCCCCCCCCCCccEEEecCCCCccHHHHHHHHHHhCCEecCCcccCcccEEEeccCC-chHHHHHHhcCCceee
Q 000879            7 SIMYRPLKDLNGIHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFE-GEKYELAKKIKSIKLV   85 (1239)
Q Consensus         7 ~ily~P~p~~~pIp~f~G~vIs~SGf~g~eR~~L~~LI~~lGA~yt~~llsk~tTHLIc~~~~-G~Ky~~Akkwg~IpIV   85 (1239)
                      .+++.|+.....+|+|.||.||+|||.+.++..|..+|..+||+|... ++..+.||+....- ++||++|.+|+ ++||
T Consensus        89 ~~~~~~l~~~~~~p~~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~-L~s~v~~~~~~~~~~~~kYe~al~wn-~~v~  166 (811)
T KOG1929|consen   89 IRLLDPLRDTMKCPGFFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRS-LSSDVNSLKILPEVKTEKYEQALKWN-IPVV  166 (811)
T ss_pred             CccCccchhhhcCCcccceEEEecccchHHHHHHHHHhhhcccEEehh-hhhhhheeeeccccchHHHHHHHhhC-Cccc
Confidence            567788777789999999999999999999999999999999999999 78888887777664 49999999997 9999


Q ss_pred             cchHHHHHHHhcCcCCCcccccCCchhhhhhhhhcCchHHHHhhcccCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCcc
Q 000879           86 NHRWLEDCLRVWELLPEVNYDKSGYELETMEAEAKDSEEEIEVASLKQFGGRDVNKSPHNLNVGIINAHESPKSTLEGQG  165 (1239)
Q Consensus        86 n~dWLeDClr~~krLpE~~Y~~~g~e~d~~~~e~~dSedE~e~~~~k~~~g~~~~~SP~~~k~gt~~~~~~~~~t~~~~~  165 (1239)
                      +.+||++|+.....++...|.....                                  ...++.|...-++..+     
T Consensus       167 ~~~w~~~s~~~~~~~~~~~~e~~~~----------------------------------~~~is~~~~~~~~~~~-----  207 (811)
T KOG1929|consen  167 SDDWLFDSIEKTAVLETKPYEGAPV----------------------------------AEAISGPIGSTLPKEI-----  207 (811)
T ss_pred             cHHHHhhhhcccccccccccccccc----------------------------------cceeccCCcccccccc-----
Confidence            9999999999999999999987310                                  0000000000000000     


Q ss_pred             ccCCCCCCCCcccccCCCCccccCCCCCCCccccccccccccccccccccCC---CCCCCCCCCcCcccccccccccccc
Q 000879          166 LLVGSTIPEASSGIDNATDMLSTPSRVSRSHQISGFDNVNITEVNGCHYTGA---SRDNSHEKTPNSAKVKSDLVPTSKN  242 (1239)
Q Consensus       166 ~~~~~~~p~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~  242 (1239)
                             +.+-  .....+.+.+.-...| .+          .+|.|+-.+.   ++....             .+++++
T Consensus       208 -------~~~~--s~t~~~~~~~~~~~~n-~~----------~~p~~a~~~~~~~c~v~~s-------------~~~~~~  254 (811)
T KOG1929|consen  208 -------LDGD--SRTANDTWSTSKVVTN-IK----------VLPFQAKIGNLDDCLVETS-------------GTTSRN  254 (811)
T ss_pred             -------cccc--chhhhccccchhcccc-cc----------cchhhhhccccccceeeec-------------CCcccc
Confidence                   0000  0001111111111111 00          1111111110   111111             034666


Q ss_pred             cccccCCCCccccccccccCCCcccccccCC--CcCC-------------ccccccccccccccccccccccccCCCCCc
Q 000879          243 AEISYHSGSKFCSLNYSRKTPRKSILTMSSG--KVDN-------------DVLNIISSKVENAETRTVTACGEIPKRGGE  307 (1239)
Q Consensus       243 ~~~~~~s~~~~~~~~y~r~~~~~~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (1239)
                      +++..|.    ...+|+++..++++.+++++  .+++             -..|..++..+..+++       ..+..++
T Consensus       255 ~s~l~r~----~~~g~~~~~~e~~e~~st~l~~~~~~~~~q~~d~~g~~~~~~n~~~~~~~~~s~~-------~~~~~~~  323 (811)
T KOG1929|consen  255 RSALSRL----SNNGGSLRFLERLEETSTSLLGDFDPNLEQLWDDNGLKQSFQNLGPSVLGPNSKR-------RSKNSVL  323 (811)
T ss_pred             hhHhHHh----hhcccceeecccCccccchhhcccchHHHhhhhhccCcccccccCcccccccccc-------ccccccc
Confidence            6776665    77899999999999776544  6654             2355566666666666       2335577


Q ss_pred             cccc-cccccccccccccCcccccccccccccccccCCCCCCCCCCCCccccCCCCCCccc------------CCCCCCC
Q 000879          308 LCHE-EESIVLPQKRMSNSTGAGSKSQKMSHNAAECNPRSPINYKTPVSETKSSACHSFET------------GNHLSPG  374 (1239)
Q Consensus       308 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~------------~~~~~~~  374 (1239)
                      ++|. +|+  +++.+.++.....++....+|+. ..+++++. -..|.+....+.|.-+.+            .+.+..+
T Consensus       324 ~~k~~sF~--~d~~~~~~~~~~~~~ll~q~~~~-a~L~~~~~-~~~~~~~~a~~~D~~~~is~i~e~~~~~~tp~~~~~~  399 (811)
T KOG1929|consen  324 IFKNCSFI--IDFEKPGDHESPDKDLLRQYHGK-AYLFPSSA-RSYQKIRSAVPLDSLPDISSINENQDSLGTPSFSESR  399 (811)
T ss_pred             cccccccc--ccccccCCccccchhHHhhcCCc-eeecCccc-ccccccccccccCCCcccccccCCCCccccccccchh
Confidence            8888 666  89999999999999999999986 44444333 345556555555532221            1111112


Q ss_pred             CCCCcceee---eCCC-CC-------------------CCCCCCCCCCCcccccccccccccccccchHH--hhhccccc
Q 000879          375 SNGHYTIET---ATPS-TA-------------------PNKKPLTPDLPSLKTVTSEALHSEGADRNALE--TCRGSKES  429 (1239)
Q Consensus       375 ~~~~~~~~~---~~~~-~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  429 (1239)
                      ..+  .+++   .-++ .+                   .-.-+-..|..+.+-+.-|..+.-.+..|..-  ....+..+
T Consensus       400 ~~~--~~~~~~~~v~s~~~~~~~e~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~k~v~~~~~v~~~~~~~~~  477 (811)
T KOG1929|consen  400 ELG--AKLLKPVDVPSVKPFFNTEKIESSSFENELLHHLLLPSTFLDVTLTEFAGVEVKHLLKNVTNPFSVNCILDLSSS  477 (811)
T ss_pred             hhh--hhhcccccccccccccchhhhccccccccchhccccccccccceeeccccceeehhcccccchhHHHHHHHhhcC
Confidence            211  1110   1111 11                   01112233666666666666666654444332  22222222


Q ss_pred             cccCCCCCCCCCCccccccccchhhhhcccccCCC---ccccccceeccCCCCCCCCCCccccCcccccchhhhhhhhhh
Q 000879          430 TVASKTDNEDFGMGSVHLDGEAEDAQNLHQDLEGS---SAKNRFLVMDKSPRPVNIDSPQVGKDKLIAKPIRKKMVAKKA  506 (1239)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~  506 (1239)
                      .        -++.+.+++.+.....+|.++-....   ....--.+|+......+..+++ +.--+++.. .|.......
T Consensus       478 ~--------~~~~~~vp~~~l~~~~e~~~~~~s~~~~~~~e~ln~~~~~~gas~~~~f~r-~~~~l~~~~-~k~s~~~~~  547 (811)
T KOG1929|consen  478 T--------EDNLRPVPAAALSQPFENLTISNSQSAEAEREKLNNLANDLGASNVKTFTR-KSTTLLTTS-AKGSKYEIA  547 (811)
T ss_pred             c--------hhhcCcchhhcccccccCceEEeeechHHHHHHHhHhhhhccccccceeee-cccEEeccc-cccchhhhc
Confidence            2        35668899999999999999887543   4444456677888878888886 332334433 344444333


Q ss_pred             cCCCCCcccccceEeeccCCCCCCccccchhhhccccccccCCCcccc-CCCCcchhhhhhhhhhhhcccCCCCCCCCcc
Q 000879          507 FGSGHTTNRKGSIYSNKISSLSSPAVCLSREVERANQEKFSSTSELET-DPPNLSDEATKEMETTLVAKCGDNSGDGIKT  585 (1239)
Q Consensus       507 ~g~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (1239)
                      -|-..++++.|.||..+.+.+.++++++.  .+..+++.+..+.+... ..|..+...++.+..+   ...++.-+.+..
T Consensus       548 ~kw~ip~vT~~wL~e~~rq~~~~~~e~~l--~~~st~~e~~~~~~~~~~~~P~~k~~t~s~sv~~---~~~~~~~~s~~~  622 (811)
T KOG1929|consen  548 GKWSIPIVTPDWLYECVRQNKGERNEGFL--NGNSTAKERPISPSIRFAVVPGKKPDTVSKSVVH---KEDTNKPKSVAT  622 (811)
T ss_pred             cccCCCccChhHHHhhccccCcccceeec--cccccccccCcccccccccCCCCCcceeecceec---ccccCCCccccc
Confidence            34448999999999999999999999999  44888888999999988 9999999999999887   566667788888


Q ss_pred             ccCCcCCCCchhhHHHHHhhccccccccccccccccchh---------------ccCCCc-ccccccccccccCccccc-
Q 000879          586 MDDETEAPDEKYEIEFEKMLNNEKSEGVQSIHKEDTMMK---------------RVPGVG-HEAHDSMVYGRDGITGKE-  648 (1239)
Q Consensus       586 ~d~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~-~~~~~~~~~~~~~~~~~~-  648 (1239)
                      ++..--++..+.|..++.++..++ ...++|...|.+-.               -..+++ +-+.+++.+.|.+.+|.. 
T Consensus       623 v~~~g~~~~~e~h~~~d~~~~~~s-k~~~~~~~~d~~~~~~~le~~~~~~ps~~~~~v~~~~~~~a~~~~~r~~~~~~~s  701 (811)
T KOG1929|consen  623 VSGKGSGSVYEEHLLLDTEVKFDS-KIAKTPPGGDLRDVSDYLELPLFDRPSHDLSRVVLQQYDLASSQRKRTALDGCVS  701 (811)
T ss_pred             ccccCCCccccccccccchhhhhh-hhhcCCCcccccccccceecccccCcCCChhhccceeeeeccccccchhhhhhhh
Confidence            888888888888877776664443 44666666664333               111333 357889999999999877 


Q ss_pred             ccccccCccccCcccccccccccccc--cccccccCCCCCCCCccccCCcccccchhhhhhhhhhccchhhcccCCCCCc
Q 000879          649 VMNAEVGMTVSGKRFDLDESTSKMDG--MKSKRKIRPSDKANGNVSADKETVESWDDEAEAADEKVGNVFEEALNDEKPE  726 (1239)
Q Consensus       649 ~~~~~~g~~~~~~~~~~~~~~~~~~~--~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  726 (1239)
                      .+-++++.  |.        .....+  .+.+-.+.++.+++|..++++        ...+.+|..+.+..         
T Consensus       702 ~~~~k~q~--t~--------~~~~~r~~~~e~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~~~---------  754 (811)
T KOG1929|consen  702 EQVPKKQP--TA--------ISNPERIQRTEKVSHLNDRYAPGIDDKRG--------ASLEEPHWRLTRNQ---------  754 (811)
T ss_pred             hhcCCcCc--cc--------ccCccccccccccchhhcccCCCcccccc--------hhhhchhhhccccc---------
Confidence            77778877  33        333444  344667778999999987755        22223333333221         


Q ss_pred             chhhhcchhhhhhcCCCCCCCCCccccccccccccccccccceeeccccccccccccccccccchh
Q 000879          727 GVELIHKEDAELKRIPGAGHEAHDSVVCRHDEITGKEGINAQVRTTLSGEMFDLDESNSKRDGTKC  792 (1239)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~  792 (1239)
                                      +.-|.|-|--  +.|++.|+++   -++++|+++...-..-..+++|.++
T Consensus       755 ----------------~~~~~~~d~s--e~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~  799 (811)
T KOG1929|consen  755 ----------------TKDHKPDDIS--EPDGKKGEER---VETNRLQTPPSNVAKKSKKEDGAKA  799 (811)
T ss_pred             ----------------cccCCccccc--cCcchhhhhh---ccCcccccCCccccCCCcccchHHH
Confidence                            1122222111  7888888887   3477777777666666666666654

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG3226 consensus DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A Back     alignment and domain information
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>smart00292 BRCT breast cancer carboxy-terminal domain Back     alignment and domain information
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 Back     alignment and domain information
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair] Back     alignment and domain information
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A Back     alignment and domain information
>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>smart00292 BRCT breast cancer carboxy-terminal domain Back     alignment and domain information
>KOG3226 consensus DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] Back     alignment and domain information
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] Back     alignment and domain information
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] Back     alignment and domain information
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>COG5275 BRCT domain type II [General function prediction only] Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>PRK05601 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification] Back     alignment and domain information
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification] Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1239
3al2_A235 Crystal Structure Of Topbp1 Brct78 Length = 235 2e-10
3al3_A235 Crystal Structure Of Topbp1 Brct78-Bach1 Peptide Co 8e-10
2r1z_A209 Crystal Structure Of The Bard1 Brct Repeat Length = 1e-05
2nte_A210 Crystal Structure Of The Bard1 Brct Domains Length 1e-05
3fa2_A218 Crystal Structure Of The Brca1 Associated Ring Doma 1e-05
3zvz_B57 Phd Finger Of Human Uhrf1 Length = 57 2e-05
3ask_A226 Structure Of Uhrf1 In Complex With Histone Tail Len 2e-05
3t6r_A72 Structure Of Uhrf1 In Complex With Unmodified H3 N- 2e-05
2lgg_A69 Structure Of Phd Domain Of Uhrf1 In Complex With H3 3e-05
3sou_A70 Structure Of Uhrf1 Phd Finger In Complex With Histo 3e-05
3shb_A77 Crystal Structure Of Phd Domain Of Uhrf1 Length = 7 3e-05
3zvy_A72 Phd Finger Of Human Uhrf1 In Complex With Unmodifie 3e-05
4gy5_A241 Crystal Structure Of The Tandem Tudor Domain And Pl 1e-04
3sqd_A219 Crystal Structure Of Human Ptip Brct56-Gamma H2ax C 5e-04
2e6r_A92 Solution Structure Of The Phd Domain In Smcy Protei 5e-04
2xnh_A287 Structure And Function Of The Rad9-Binding Region O 5e-04
3olc_X298 Crystal Structure Of The N-Terminal Region Of Topbp 5e-04
2xnk_A292 Structure And Function Of The Rad9-Binding Region O 6e-04
>pdb|3AL2|A Chain A, Crystal Structure Of Topbp1 Brct78 Length = 235 Back     alignment and structure 
Iteration: 1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 18/173 (10%)
Query: 968  THFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHKNG-LSEDGAIN 1026
            TH +     R EK+ A+ A+G+W+L   YL AC  AG F+ EE YEW  +  L     IN
Sbjct: 47   THIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHFVQEEDYEWGSSSILDVLTGIN 106
Query: 1027 LEAPR------KWR---LLRERTG--HGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNI 1075
            ++  R      +WR     R+ +G   GAF G ++I++ D         KR++++G   +
Sbjct: 107  VQQRRLALAAXRWRKKIQQRQESGIVEGAFSGWKVILHVD--QSREAGFKRLLQSGGAKV 164
Query: 1076 LA--TSPPYTRFLNSGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFV 1126
            L   + P +    +   D   + P    V+  + E     + C+  +Y+ +++
Sbjct: 165  LPGHSVPLFKEATHLFSDLNKLKPDDSGVN--IAEAAAQNVYCLRTEYIADYL 215
>pdb|3AL3|A Chain A, Crystal Structure Of Topbp1 Brct78-Bach1 Peptide Complex Length = 235 Back     alignment and structure
>pdb|2R1Z|A Chain A, Crystal Structure Of The Bard1 Brct Repeat Length = 209 Back     alignment and structure
>pdb|2NTE|A Chain A, Crystal Structure Of The Bard1 Brct Domains Length = 210 Back     alignment and structure
>pdb|3FA2|A Chain A, Crystal Structure Of The Brca1 Associated Ring Domain (Bard1) Tandem Brct Domains Length = 218 Back     alignment and structure
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1 Length = 57 Back     alignment and structure
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail Length = 226 Back     alignment and structure
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3 N-Terminal Tail Length = 72 Back     alignment and structure
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3 Peptide Length = 69 Back     alignment and structure
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3 1-9 Peptide Length = 70 Back     alignment and structure
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1 Length = 77 Back     alignment and structure
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified Histone H3 N-Terminal Tail Length = 72 Back     alignment and structure
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant Homeodomain Of Uhrf1 With Histone H3k9me3 Length = 241 Back     alignment and structure
>pdb|3SQD|A Chain A, Crystal Structure Of Human Ptip Brct56-Gamma H2ax Complex Length = 219 Back     alignment and structure
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein Length = 92 Back     alignment and structure
>pdb|2XNH|A Chain A, Structure And Function Of The Rad9-Binding Region Of The Dna Damage Checkpoint Adaptor Topbp1 Length = 287 Back     alignment and structure
>pdb|3OLC|X Chain X, Crystal Structure Of The N-Terminal Region Of Topbp1 Length = 298 Back     alignment and structure
>pdb|2XNK|A Chain A, Structure And Function Of The Rad9-Binding Region Of The Dna Damage Checkpoint Adaptor Topbp1 Length = 292 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1239
3al2_A235 DNA topoisomerase 2-binding protein 1; BRCT domain 1e-44
3al2_A235 DNA topoisomerase 2-binding protein 1; BRCT domain 4e-10
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 8e-34
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 2e-10
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 4e-04
3l41_A220 BRCT-containing protein 1; BRC1, BRCT domain, tand 3e-30
3l41_A220 BRCT-containing protein 1; BRC1, BRCT domain, tand 4e-07
3sqd_A219 PAX-interacting protein 1; tandem BRCT domains, ce 1e-29
3sqd_A219 PAX-interacting protein 1; tandem BRCT domains, ce 3e-09
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 2e-28
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 4e-09
2etx_A209 Mediator of DNA damage checkpoint protein 1; tande 3e-27
2etx_A209 Mediator of DNA damage checkpoint protein 1; tande 5e-05
1t15_A214 Breast cancer type 1 susceptibility protein; prote 1e-26
1t15_A214 Breast cancer type 1 susceptibility protein; prote 5e-11
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 9e-23
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 1e-21
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 1e-07
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 5e-20
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 3e-09
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 8e-20
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 7e-04
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 6e-19
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 5e-05
1kzy_C259 Tumor suppressor P53-binding protein 1; tandem-BRC 1e-18
2ebw_A97 DNA repair protein REV1; A/B/A 3 layers, parallel 2e-18
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 5e-16
2cou_A109 ECT2 protein; BRCT domain, RHO GTPase, structural 6e-16
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 2e-15
1wf6_A132 Similar to S.pombe -RAD4+/CUT5+product (A40727); B 8e-15
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 1e-14
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 1e-14
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 4e-14
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 9e-14
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 4e-13
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 8e-13
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 5e-09
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 1e-12
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 3e-12
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 7e-12
3pa6_A107 Microcephalin; BRCT domain, cell cycle; HET: MSE; 7e-12
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 1e-11
2k16_A75 Transcription initiation factor TFIID subunit 3; p 1e-11
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 5e-11
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 6e-11
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 2e-10
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 3e-10
2yt5_A66 Metal-response element-binding transcription facto 6e-10
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 8e-10
3ef0_A372 RNA polymerase II subunit A C-terminal domain phos 6e-09
3ef1_A442 RNA polymerase II subunit A C-terminal domain phos 2e-08
3pc6_A104 DNA repair protein XRCC1; BRCT domain, protein:pro 1e-07
2vxb_A241 DNA repair protein RHP9; BRCT, nucleus, cell cycle 1e-07
2jw5_A106 DNA polymerase lambda; BRCT domain, family X polym 8e-07
3ii6_X263 DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter 7e-06
3ii6_X263 DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter 1e-05
2ro1_A 189 Transcription intermediary factor 1-beta; KAP, TIF 9e-06
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 7e-05
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 1e-04
3o70_A68 PHD finger protein 13; PHF13, structural genomics 1e-04
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 3e-04
3o36_A 184 Transcription intermediary factor 1-alpha; TRIM24, 3e-04
1x4i_A70 Inhibitor of growth protein 3; structural genomics 3e-04
1wee_A72 PHD finger family protein; structural genomics, PH 4e-04
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 5e-04
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 5e-04
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 8e-04
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Length = 235 Back     alignment and structure
 Score =  161 bits (407), Expect = 1e-44
 Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 21/222 (9%)

Query: 923  LNKLKDEPIWFILSG-HRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKF 981
            L  LK + I F LS  +  +R ++  +I  L G +  +   +    TH +     R EK+
Sbjct: 3    LGSLKKQYI-FQLSSLNPQERIDYCHLIEKLGGLVI-EKQCFDPTCTHIVVGHPLRNEKY 60

Query: 982  FAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHKN-------GLSEDGAINLEAPRKWR 1034
             A+ A+G+W+L   YL AC  AG F+ EE YEW  +       G++        A  +WR
Sbjct: 61   LASVAAGKWVLHRSYLEACRTAGHFVQEEDYEWGSSSILDVLTGINVQQRRLALAAMRWR 120

Query: 1035 LLRERTG-----HGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILA--TSPPYTRFLN 1087
               ++        GAF G ++I++ D         KR++++G   +L   + P +    +
Sbjct: 121  KKIQQRQESGIVEGAFSGWKVILHVDQ--SREAGFKRLLQSGGAKVLPGHSVPLFKEATH 178

Query: 1088 SGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKP 1129
               D   + P    V   + E     + C+  +Y+ +++ + 
Sbjct: 179  LFSDLNKLKPDDSGV--NIAEAAAQNVYCLRTEYIADYLMQE 218
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Length = 235 Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Length = 210 Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Length = 210 Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Length = 210 Back     alignment and structure
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Length = 220 Back     alignment and structure
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Length = 220 Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Length = 219 Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Length = 219 Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Length = 229 Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Length = 229 Back     alignment and structure
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Length = 209 Back     alignment and structure
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Length = 209 Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Length = 214 Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Length = 214 Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Length = 199 Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Length = 199 Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Length = 112 Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Length = 112 Back     alignment and structure
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Length = 259 Back     alignment and structure
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Length = 97 Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 Back     alignment and structure
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 109 Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Length = 132 Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Length = 107 Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372 Back     alignment and structure
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442 Back     alignment and structure
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} PDB: 3pc8_A* 3qvg_B* 1cdz_A Length = 104 Back     alignment and structure
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* Length = 241 Back     alignment and structure
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} Length = 106 Back     alignment and structure
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Length = 263 Back     alignment and structure
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Length = 263 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1239
d1t15a1109 c.15.1.3 (A:1649-1757) Breast cancer associated pr 1e-15
d1t15a1109 c.15.1.3 (A:1649-1757) Breast cancer associated pr 3e-11
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 1e-13
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 2e-11
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 4e-11
d1wf6a_132 c.15.1.5 (A:) DNA topoisomerase II binding protein 5e-11
d1wf6a_132 c.15.1.5 (A:) DNA topoisomerase II binding protein 2e-05
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 8e-11
d1cdza_96 c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Hom 4e-10
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 9e-10
d1kzyc1153 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) 1e-09
d1kzyc1153 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) 4e-06
d1t15a2102 c.15.1.3 (A:1758-1859) Breast cancer associated pr 1e-09
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 6e-08
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 9e-08
d1in1a_88 c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sa 1e-06
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 2e-06
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 8e-05
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 3e-04
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 7e-04
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: BRCT domain
domain: Breast cancer associated protein, BRCA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (176), Expect = 1e-15
 Identities = 22/111 (19%), Positives = 50/111 (45%), Gaps = 10/111 (9%)

Query: 933  FILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPE-----IRRTEKFFAAAAS 987
             ++SG  L  +EF +V +  +      ++  + + TH +          RT K+F   A 
Sbjct: 4    MVVSG--LTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAG 61

Query: 988  GRWILKTDYLSACSQAGKFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLRE 1038
            G+W++   +++   +  K L E  +E   + ++     N + P++ R  ++
Sbjct: 62   GKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGR---NHQGPKRARESQD 109
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 132 Back     information, alignment and structure
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 132 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1239
d1t15a1109 Breast cancer associated protein, BRCA1 {Human (Ho 99.88
d1wf6a_132 DNA topoisomerase II binding protein 1, TopBP1 {Hu 99.77
d1t15a1109 Breast cancer associated protein, BRCA1 {Human (Ho 99.72
d1cdza_96 DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta 99.71
d1wf6a_132 DNA topoisomerase II binding protein 1, TopBP1 {Hu 99.64
d1t15a2102 Breast cancer associated protein, BRCA1 {Human (Ho 99.61
d1kzyc1153 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 99.59
d1l7ba_92 NAD+-dependent DNA ligase, domain 4 {Thermus therm 99.43
d1cdza_96 DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta 99.4
d1kzyc1153 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 99.32
d1in1a_88 DNA ligase III alpha {Human (Homo sapiens) [TaxId: 99.17
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 99.16
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 99.13
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 99.13
d1t15a2102 Breast cancer associated protein, BRCA1 {Human (Ho 99.04
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.97
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.9
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 98.54
d1l0ba297 Breast cancer associated protein, BRCA1 {Rat (Ratt 98.52
d1in1a_88 DNA ligase III alpha {Human (Homo sapiens) [TaxId: 98.45
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 98.4
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.36
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 98.23
d1wema_76 Death associated transcription factor 1, Datf1 (DI 98.14
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 98.13
d1l7ba_92 NAD+-dependent DNA ligase, domain 4 {Thermus therm 98.11
d1l0ba297 Breast cancer associated protein, BRCA1 {Rat (Ratt 98.07
d1kzyc2106 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 97.37
d1kzyc2106 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 97.06
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 87.05
d1weqa_85 PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculu 86.76
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: BRCT domain
domain: Breast cancer associated protein, BRCA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.3e-23  Score=147.93  Aligned_cols=101  Identities=20%  Similarity=0.295  Sum_probs=88.7

Q ss_pred             EEEEEECCH-HHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCC-----CCCCHHHHHHHHCCCEEECHHHHHHHHHCC
Q ss_conf             499981575-75999999999819799711887468645999099-----877499999983399072311899987329
Q 000879          931 IWFILSGHR-LQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPE-----IRRTEKFFAAAASGRWILKTDYLSACSQAG 1004 (1239)
Q Consensus       931 ~vVllSGLs-eekkeL~k~IkkLGG~Vv~ds~~~s~~cTHLIa~k-----~~RT~KfL~AIA~GkWIVspsWI~dSlkaG 1004 (1239)
                      ++|++|||+ +++..+.+++..+||.+.   ..|++.|||||+..     +.||+|||.|++.|+|||+++||.+|++++
T Consensus         2 ~~i~~SGl~~~e~~~l~~~i~~~Gg~~~---~~~~~~~THlI~~~~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~   78 (109)
T d1t15a1           2 MSMVVSGLTPEEFMLVYKFARKHHITLT---NLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKER   78 (109)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHHTCEEC---SSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHTT
T ss_pred             EEEEECCCCHHHHHHHHHHHHHCCCEEE---EEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
T ss_conf             7999879997999999999998697998---6726884289994376325675599999998798336679999999938


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             887887543357998955645632025789989
Q 000879         1005 KFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLR 1037 (1239)
Q Consensus      1005 kfLDEedYEL~d~~~eed~~~~~~aprR~Rl~~ 1037 (1239)
                      +++||++|++.++..   +..+..+|+|+|+++
T Consensus        79 ~~l~e~~y~v~~~~~---~~~~~~gp~r~R~~~  108 (109)
T d1t15a1          79 KMLNEHDFEVRGDVV---NGRNHQGPKRARESQ  108 (109)
T ss_dssp             SCCCGGGGBCCEETT---TBTTCCHHHHHHTCT
T ss_pred             CCCCCHHEEEECCCC---CCCCCCCCHHHHHCC
T ss_conf             968814258714667---885766641777644
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weqa_ g.50.1.2 (A:) PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure