Citrus Sinensis ID: 000884

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------124
Protein Sequence
MALLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNTAFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAAAAVVAADVSCFEEKGGLPVEAFAKVHEIFSHVDWLDHGSDFALNVLQHINATNLIQEMSDTESPPSAGICSLLQELSPRDHQDKKSQSELDNSPKTSPKDYRNMIINASNLIQETSDSGSPPSMIISSLLQELSPRGHQHKKTHVVDEDSTKSSLPSAVKTQSVLLPKMSPDTDESKANEEPQDPRNALQVCNQSVDNFQKTSKSSQTTSLSCNSVQVSSLSVSGHHDASLAPCHKPLLHDHALSVSAEVTHQIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSRSHQTKKLKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSADRGYM
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccEEEEccEEEEEcccccccccHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHccccccccccccccccccEEEEEcccccccccccEEEEEEEccccccccccccEEEEccccccccEEEcccccccEEEEEccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccccccHHcccccccccccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccEEEcccccHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcccccccEEEEEcEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHcccccccccccccEEEEEEEEEEccccccccccccEEEEEccccccccccccEEEEEcccccccEEEEEEcccEEEEEccccEEcccEEEEEEEccccHHHHHHEEEEEEcHcHcHccEEEEcHHHHHHHHcHHHHcccccEEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccHHHcccccccccccccccccccHcccccccHccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEEEcHHccccHHHHHcccccccccccccHHHHHHHHHHccccccccccccccccccccccEEEEEcHHHHHHHHHHHHHccccHHHHHHHHHHccHHHccHHHHHHHHHHcccHHHHHHHHHccccHHHHcHHHHHHHHHHccccHHHHHHEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccEEEEEHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHcccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mallrrlffrkppdglleisERVYVFNCCfttdaweeeDYKKYIGGIIgqlrehspdsqflVFNFREEETKSLMANVLSEfditimdyprqyegcpllTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQllsplnpvpsqlryLQYVSRrnvvsewppldraltlDCVILrsipnfdgqggcrpifriygqdpfvandrsakVLYSTSKRSKAVRTYKQAECELVKidincciqgdVVLECISLNDDLEREEMMFRVVFNTAFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAAAAVVAADVscfeekgglpveaFAKVHEIFSHvdwldhgsDFALNVLQHINATNliqemsdtesppsagicsllqelsprdhqdkksqseldnspktspkdyRNMIINASNliqetsdsgsppsMIISSLLQelsprghqhkkthvvdedstksslpsavktqsvllpkmspdtdeskaneepqdprnalQVCNQSVDnfqktskssqttslscnsvqvsslsvsghhdaslapchkpllhdhalsvsaevthqipaspaipdpnlassckheaaglksdsfspttpppppaprpsiassaskvpspppppqlpphhfssscpahfphtkeskshmqdrdkpssatplpapetsssgtnsstslstaplpapatakstfpppppppppptpplktpvfnrntdasfstpsppastvtlsttsspptpppppkpplkeqsairagpppppppplysgssasstvssptiplappppslssnsspvpppppiakvvsktgvaspvpappsispssgkgrlsrtissrshqtkklkplhwLKLTRAVQGSLWAEAQksgeaskapeidmsELENLFsatipnsekggkpnqrvprgpqsdkvqlidHRRAYNCEIMLskvkvplpeLMRSVLALEDSAIDADQVENLIkfcptkeemdllkgytgdkeklgKCEQFFLELMkvprvesklRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPelldfsedltslepASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYfgedparcpfeqaqiGVIRSADRGYM
Flexible Loop (DISEMBL)
mallrrlffrkppdglleiservYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSRRnvvsewppldrALTLDCVILRSIpnfdgqggCRPIFRIYGQDPFVANDRSAKvlystskrskavrtYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNTAFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAAAAVVAADVSCFEEKGGLPVEAFAKVHEIFSHVDWLDHGSDFALNVLQHINATNLIQEMSDTESPPSAGICSLLQELSPRDhqdkksqseldnspktspkdyRNMIINASNLIQETSDSGSPPSMIISSLLQELSPRGHQHKKThvvdedstksslpsavktqsvllpkmspDTDESKANEEPQDPRNALQVCNQSVDNFQKTskssqttslsCNSVQVSSLSVSGHHDASLAPCHKPLLHDHALSVSAEVTHQIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASpvpappsispssgkgrlsrtissrshqtkklkplhwlKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSATipnsekggkpnqrvprgpqsdkvqlIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGedparcpfeqaqigvirsadrgym
Low Complexity Region (SEG)
MALLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNTAFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMdaaaavvaadvSCFEEKGGLPVEAFAKVHEIFSHVDWLDHGSDFALNVLQHINATNLIQEMSDTESPPSAGICSLLQELSPRDHQDKKSQSELDNSPKTSPKDYRNMIINASNLIQETSDSGSPPSMIISSLLQELSPRGHQHKKTHVVDEDSTKSSLPSAVKTQSVLLPKMSPDTDESKANEEPQDPRNALQVCNQSVDNFqktskssqttsLSCNSVQVSSLSVSGHHDASLAPCHKPLLHDHALSVSAEVTHQIPASPAIPDPNLASSCKHEAAGLKsdsfspttpppppaprpsiassaskvpspppppqlpphhfsssCPAHFPHTKESKSHMQDRDKPSSATPLPAPEtsssgtnsstslstaplpapatakstfpppppppppptpplktpVFNRNTDASFstpsppastvtlsttsspptpppppkppLKEQSAIRAGppppppppLYsgssasstvssptiplappppslssnsspvpppppiakvvskTGvaspvpappsispssGKGRLSRTISSRSHQTKKLKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSADRGYM
Disordered region (IsUnstruct)
***LRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNTAFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAAAAVVAADVSCFEEKGGLPVEAFAKVHEIFSHVDWLDHGSDFALNVLQHINATNLI***************************************************************************************************************************************************************************************L*****************************************************************************************************************************************************************************************************************************************************************************************************PLHWLKLTRAVQGSLW**************************************************QLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAE************************ISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVI********
Disordered Region (DISOPRED)
*ALLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNTAFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAA*******************EAFAKVHEIFSHVDWLDHGSDF***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************PLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENL******************************DHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKV*******************ILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSADRGYM
Disordered Region (DISEMBL)
MALLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNTAFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAAAAVVAADVSCFEEKGGLPVEAFAKVHEIFSHVDWLDHGSDFALNVLQHINATNLIQE********SAGICSLLQELS*******************SPKDYRNMIINASNLIQ********PSMIISSLLQELSP***********************VKTQSVLLPKMS***************RNALQVCNQSVD********************************SLAPCHKPLLHDHALSVSAEVTHQIPASPAIPDPNLASSC*************************************************SSCPAHFP*************************************************************PTPPLKTPVFNRNTD**************************************RAGPPPPPPPP*********************************PPPPIAKVV************************************KLKPLHWLKLTRAVQGSLW************PEIDMSELENLFSATIPNS****************DKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSADRGYM
Disordered Region (DISPRO)
*ALLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNTAFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAA*******VSC****GGLPVEAFAKVHEIFSHVDWLDHGSDFALNVLQHIN*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************HQTKKLKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIP****************QSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSADRG**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNTAFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAAAAVVAADVSCFEEKGGLPVEAFAKVHEIFSHVDWLDHGSDFALNVLQHINATNLIQEMSDTESPPSAGICSLLQELSPRDHQDKKSQSELDNSPKTSPKDYRNMIINASNLIQETSDSGSPPSMIISSLLQELSPRGHQHKKTHVVDEDSTKSSLPSAVKTQSVLLPKMSPDTDESKANEEPQDPRNALQVCNQSVDNFQKTSKSSQTTSLSCNSVQVSSLSVSGHHDASLAPCHKPLLHDHALSVSAEVTHQIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSRSHQTKKLKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQxxxxxxxxxxxxxxxxxxxxxLSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSADRGYM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1237	2.2.26 [Sep-21-2011]
Q9LVN1	1266	Formin-like protein 13 OS	yes	no	0.345	0.338	0.672	0.0
Q6ZCX3	1364	Formin-like protein 6 OS=	yes	no	0.349	0.316	0.645	1e-176
Q9SK28	1111	Formin-like protein 18 OS	no	no	0.303	0.337	0.671	1e-161
Q9LH02	495	Formin-like protein 17 OS	no	no	0.287	0.719	0.717	1e-148
Q9FLQ7	1649	Formin-like protein 20 OS	no	no	0.274	0.206	0.662	1e-147
Q6K8Z4	1385	Formin-like protein 7 OS=	no	no	0.299	0.267	0.680	1e-147
Q7G6K7	1234	Formin-like protein 3 OS=	no	no	0.319	0.320	0.621	1e-142
Q9C6S1	1230	Formin-like protein 14 OS	no	no	0.320	0.321	0.625	1e-141
Q84ZL0	1627	Formin-like protein 5 OS=	no	no	0.279	0.212	0.654	1e-132
Q7XWS7	1669	Formin-like protein 12 OS	no	no	0.304	0.225	0.604	1e-130

>sp|Q9LVN1|FH13_ARATH Formin-like protein 13 OS=Arabidopsis thaliana GN=FH13 PE=2 SV=3

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 293/436 (67%), Positives = 353/436 (80%), Gaps = 8/436 (1%)

Query: 1   MALLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQF 60
           MAL R+LF+RKPPDGLLEI +RV+VF+CCF+TD+WEEE+YK Y+ G++ QL+EH P++  
Sbjct: 1   MALFRKLFYRKPPDGLLEICDRVFVFDCCFSTDSWEEENYKVYMAGVVNQLQEHFPEASS 60

Query: 61  LVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHN 120
           LVFNFRE  T+S+MA+VLSE  +TIMDYPR YEGC LL +EV+HHFLRS+ESWLSLG +N
Sbjct: 61  LVFNFREVGTRSVMADVLSEHGLTIMDYPRHYEGCSLLPVEVMHHFLRSSESWLSLGPNN 120

Query: 121 VLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQL 180
           +L+MHCE G WPVLAFMLAALLIYRKQYSGE KTLDMIY+QAPRELL+L SPLNP+PSQL
Sbjct: 121 LLLMHCESGAWPVLAFMLAALLIYRKQYSGESKTLDMIYKQAPRELLRLFSPLNPIPSQL 180

Query: 181 RYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSA 240
           RYLQYVSRRN+VSEWPPLDRALT+DCVILR IP+  GQGG RP+FRIYGQDPF  +D+  
Sbjct: 181 RYLQYVSRRNLVSEWPPLDRALTMDCVILRFIPDVSGQGGFRPMFRIYGQDPFFVDDKKP 240

Query: 241 KVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNT 300
           K+LY+T K+ K +R YKQAECELVKIDINC +QGD+V+EC+SLNDD+ERE MMFRVVFNT
Sbjct: 241 KLLYTTPKKGKHLRVYKQAECELVKIDINCHVQGDIVIECLSLNDDMEREVMMFRVVFNT 300

Query: 301 AFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAAAAVVAADVSCFEEKGGLPV 360
           AFIRSNILMLN DEVD LW+ KE FPK FR E+LFS+MDAA++V   + S  EEK GLP+
Sbjct: 301 AFIRSNILMLNRDEVDTLWHIKE-FPKGFRVELLFSDMDAASSVDLMNFSSLEEKDGLPI 359

Query: 361 EAFAKVHEIFSHVDWLDHGSDFALNVLQHINATNLIQEMSDTESPPSAGICSLLQELSPR 420
           E F+KVHE F+ VDW+D  +D   N+ Q +   N +QE  D  S P       LQ LSP+
Sbjct: 360 EVFSKVHEFFNQVDWVDQ-TDATRNMFQQLAIANAVQEGLDGNSSPR------LQGLSPK 412

Query: 421 DHQDKKSQSELDNSPK 436
              D    + ++NS K
Sbjct: 413 SIHDIMKHAAIENSAK 428

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ZCX3|FH6_ORYSJ Formin-like protein 6 OS=Oryza sativa subsp. japonica GN=FH6 PE=2 SV=2

 Score =  620 bits (1599), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 280/434 (64%), Positives = 346/434 (79%), Gaps = 2/434 (0%)

Query: 1   MALLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQF 60
           MAL R+ F+RKPPDGLLEI+ERVYVF+ CFTTD + ++ Y+ YIG I+ QL+ H  D+ F
Sbjct: 1   MALFRKFFYRKPPDGLLEITERVYVFDSCFTTDVFNDDKYQDYIGDIVAQLQCHFADASF 60

Query: 61  LVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHN 120
           +VFNFRE E++SL+AN+LS +++ +MDYPRQYEGCPL+T+E+IHHFLRS ESWLSL Q N
Sbjct: 61  MVFNFREGESQSLLANILSSYEMVVMDYPRQYEGCPLVTIEMIHHFLRSGESWLSLSQQN 120

Query: 121 VLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQL 180
           VL+MHCERGGW VLAFMLA LL+YRKQY GE +TL+MIYRQAPREL+QLLSPLNP+PSQ+
Sbjct: 121 VLIMHCERGGWAVLAFMLAGLLLYRKQYIGEQRTLEMIYRQAPRELIQLLSPLNPIPSQI 180

Query: 181 RYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSA 240
           RYL Y+SRRNV + WPP DRALTLDCVILR+IP F+G+GGCRPIFRIYG+DP +A   + 
Sbjct: 181 RYLHYISRRNVSAVWPPGDRALTLDCVILRNIPGFNGEGGCRPIFRIYGKDPLLATSNTP 240

Query: 241 KVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNT 300
           KVL+ST KRSK VR YK+ +CEL+KIDI+C IQGDVVLECISL+ D +REEM+FRV+FNT
Sbjct: 241 KVLFSTPKRSKYVRLYKKVDCELIKIDIHCHIQGDVVLECISLDADQQREEMIFRVMFNT 300

Query: 301 AFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAAAAVVAADVSCFEEKGGLPV 360
           AFIRSNILMLN DE+DILW+AK+ FPKEFRAE+LFSEMD+   + + +V    EK GLPV
Sbjct: 301 AFIRSNILMLNRDEIDILWDAKDRFPKEFRAEVLFSEMDSVNQLDSMEVGGIGEKEGLPV 360

Query: 361 EAFAKVHEIFSHVDWLDHGSDFALNVLQHINATNLIQEMSDTESPPSAGICSLLQELSPR 420
           EAFAKV E+FS+VDWLD  +D A  + Q + ++  IQ      SP        L  +SP 
Sbjct: 361 EAFAKVQEMFSNVDWLDPTADAAALLFQQLTSSENIQLRKGLLSPNKKDFH--LSSISPT 418

Query: 421 DHQDKKSQSELDNS 434
             Q    + +L N+
Sbjct: 419 KKQSDNVEDKLSNA 432

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SK28|FH18_ARATH Formin-like protein 18 OS=Arabidopsis thaliana GN=FH18 PE=2 SV=2

 Score =  568 bits (1464), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 255/380 (67%), Positives = 312/380 (82%)

Query: 36  EEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGC 95
           E+EDY+ Y+  I+ QLRE  P + F+VFNFR+ +++S M +VL+E+D+TIMDYPR YEGC
Sbjct: 3   EDEDYRVYVSRIMSQLREQFPGASFMVFNFRDGDSRSRMESVLTEYDMTIMDYPRHYEGC 62

Query: 96  PLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTL 155
           PLLTME +HHFL+S ESWL L Q N+L+ HCE GGWP LAFMLA+LL+YRKQ+SGE++TL
Sbjct: 63  PLLTMETVHHFLKSAESWLLLSQQNILLSHCELGGWPTLAFMLASLLLYRKQFSGEHRTL 122

Query: 156 DMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNF 215
           +MIY+QAPRELLQL+SPLNP+PSQLR+LQY+SRRNV S+WPPLD+ALTLDCV LR IP+F
Sbjct: 123 EMIYKQAPRELLQLMSPLNPLPSQLRFLQYISRRNVGSQWPPLDQALTLDCVNLRLIPDF 182

Query: 216 DGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGD 275
           DG+GGCRPIFRIYGQDPF+A+DR++KVL+S  KRSKAVR YKQA+CELVKIDINC I GD
Sbjct: 183 DGEGGCRPIFRIYGQDPFMASDRTSKVLFSMPKRSKAVRQYKQADCELVKIDINCHILGD 242

Query: 276 VVLECISLNDDLEREEMMFRVVFNTAFIRSNILMLNLDEVDILWNAKELFPKEFRAEILF 335
           VVLECI+L  DLEREEMMFRVVFNTAF+RSNIL LN  E+D+LWN  + FPK+F AE++F
Sbjct: 243 VVLECITLGSDLEREEMMFRVVFNTAFLRSNILTLNRGEIDVLWNTTDRFPKDFSAEVIF 302

Query: 336 SEMDAAAAVVAADVSCFEEKGGLPVEAFAKVHEIFSHVDWLDHGSDFALNVLQHINATNL 395
           SEM A   + + D+   EEK  LP+EAFAKV EIFS  +WLD  SD A+ V   I A N+
Sbjct: 303 SEMGAGKKLASVDLPHMEEKDVLPMEAFAKVQEIFSEAEWLDPNSDVAVTVFNQITAANI 362

Query: 396 IQEMSDTESPPSAGICSLLQ 415
           +QE  D+ SP S    SLL+
Sbjct: 363 LQESLDSGSPRSPDSRSLLE 382

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LH02|FH17_ARATH Formin-like protein 17 OS=Arabidopsis thaliana GN=FH17 PE=2 SV=2

 Score =  527 bits (1357), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/361 (71%), Positives = 301/361 (83%), Gaps = 5/361 (1%)

Query: 868  QTKK--LKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSAT--IPNSEKG 923
            QT+K  LKP HWLKLTRAVQGSLWAEAQKS EA+ AP+ D+SE+E LFSA     NSE  
Sbjct: 90   QTRKANLKPYHWLKLTRAVQGSLWAEAQKSDEAATAPDFDISEIEKLFSAVNLSSNSENN 149

Query: 924  GKPNQRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVEN 983
            G  + R  R P+ +KVQLI+ +RAYNCEIMLSKVK+PLP+LM SVLAL++S ID DQV+N
Sbjct: 150  GGKSGRRAR-PKVEKVQLIELKRAYNCEIMLSKVKIPLPDLMSSVLALDESVIDVDQVDN 208

Query: 984  LIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDL 1043
            LIKFCPTKEE +LLKG+ G+KE LG+CEQFFLEL+KVPRVE+KLRVFSFKIQFH+QV+DL
Sbjct: 209  LIKFCPTKEEAELLKGFIGNKETLGRCEQFFLELLKVPRVETKLRVFSFKIQFHSQVTDL 268

Query: 1044 RSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRAR 1103
            R  LN ++SA  +VR S KL+RIMQTILSLGNALN GTARG+AIGF LDSLLKLTDTR+R
Sbjct: 269  RRGLNTIHSATNEVRGSTKLKRIMQTILSLGNALNHGTARGSAIGFHLDSLLKLTDTRSR 328

Query: 1104 NNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQEL 1163
            N+KMTLMHYLCKVLA+KLP LL+F +D+ SLE A+ IQLK+LAEEMQA SKGLEKVVQE 
Sbjct: 329  NSKMTLMHYLCKVLAEKLPGLLNFPKDMVSLEAATNIQLKYLAEEMQATSKGLEKVVQEF 388

Query: 1164 SMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQ 1223
            + SE D  IS++F   L+EFL  AE EVR+LASLYS VG + DAL LYFGEDPAR PFEQ
Sbjct: 389  TASETDCQISKHFHMNLKEFLSVAEGEVRSLASLYSTVGGSADALALYFGEDPARVPFEQ 448

Query: 1224 A 1224
             
Sbjct: 449  V 449

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLQ7|FH20_ARATH Formin-like protein 20 OS=Arabidopsis thaliana GN=FH20 PE=2 SV=3

 Score =  525 bits (1352), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 226/341 (66%), Positives = 287/341 (84%), Gaps = 1/341 (0%)

Query: 1   MALLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQF 60
           MAL RR F++KPPD LLEISERVYVF+CCF++D   E++YK Y+GGI+ QL++H P++ F
Sbjct: 1   MALFRRFFYKKPPDRLLEISERVYVFDCCFSSDVMGEDEYKVYLGGIVAQLQDHFPEASF 60

Query: 61  LVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSL-GQH 119
           +VFNFRE E +S +++VLS++D+T+MDYPRQYE CPLL +E+IHHFLRS+ESWLSL GQ 
Sbjct: 61  MVFNFREGEQRSQISDVLSQYDMTVMDYPRQYESCPLLPLEMIHHFLRSSESWLSLEGQQ 120

Query: 120 NVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQ 179
           NVL+MHCERGGWPVLAFML+ LL+YRKQY GE KTL+M+++QAP+ELL LLSPLNP PSQ
Sbjct: 121 NVLLMHCERGGWPVLAFMLSGLLLYRKQYHGEQKTLEMVHKQAPKELLHLLSPLNPQPSQ 180

Query: 180 LRYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRS 239
           LRYLQY+SRRN+ S+WPP D  L LDC+ILR +P+F+G+ GCRPI R+YGQDP    +RS
Sbjct: 181 LRYLQYISRRNLGSDWPPSDTPLLLDCLILRDLPHFEGKKGCRPILRVYGQDPKARTNRS 240

Query: 240 AKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFN 299
           + +L+ST K  K  R Y+Q EC LVK+DI C +QGDVVLECI L+DDL  EEM+FR++F+
Sbjct: 241 SILLFSTLKTKKHTRLYQQEECILVKLDIQCRVQGDVVLECIHLHDDLVSEEMVFRIMFH 300

Query: 300 TAFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDA 340
           TAF+R+NILML  DE+DILW+ K+ FPKEF+AE+LFS  DA
Sbjct: 301 TAFVRANILMLQRDEMDILWDVKDQFPKEFKAEVLFSGADA 341

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K8Z4|FH7_ORYSJ Formin-like protein 7 OS=Oryza sativa subsp. japonica GN=FH7 PE=2 SV=2

 Score =  522 bits (1344), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 256/376 (68%), Positives = 310/376 (82%), Gaps = 6/376 (1%)

Query: 852  SSGKGRLSRTISSRSHQTKK---LKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSE 908
            S+ + R  R++  R +Q+ K   LKPLHW+K++RA QGSLWAE QKS EAS+ PEID+SE
Sbjct: 963  STARSRSPRSL--RPNQSSKRTPLKPLHWVKVSRATQGSLWAETQKSDEASRTPEIDISE 1020

Query: 909  LENLFSATIPNSEKGGKPNQRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSV 968
            LE+LFS  +PN E+  +  QR     + +KV LID +R+ NCEIML  +K+PLP+LM SV
Sbjct: 1021 LESLFSVAMPNMEEK-RARQRPSVAAKQEKVLLIDLQRSKNCEIMLRNIKMPLPDLMNSV 1079

Query: 969  LALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLR 1028
            LAL+DS +D DQV+ LIKFCPTKEEM+LLKG+TG+KE LGKCEQFFLE+MKVPRVESKLR
Sbjct: 1080 LALDDSIVDGDQVDYLIKFCPTKEEMELLKGFTGNKENLGKCEQFFLEMMKVPRVESKLR 1139

Query: 1029 VFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIG 1088
            + SFKI+F TQV+DL++SLN +NS AE+VRNS KL+R+MQTILSLGNALNQGTARG+A+G
Sbjct: 1140 ILSFKIKFLTQVADLKNSLNTINSVAEEVRNSVKLKRVMQTILSLGNALNQGTARGSAVG 1199

Query: 1089 FRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEE 1148
            FRLDSLLKL D RARNN+MTLMHYLCKVL+DKLPE+LDF++DLT LEPASKIQLK LAEE
Sbjct: 1200 FRLDSLLKLIDIRARNNRMTLMHYLCKVLSDKLPEVLDFNKDLTYLEPASKIQLKELAEE 1259

Query: 1149 MQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDAL 1208
            MQA++KGLEKV QEL+ SE DG  SE F K L+EFL  A+AE R+LA LYS  G++ D+L
Sbjct: 1260 MQAITKGLEKVEQELTTSEKDGPGSEIFYKKLKEFLADAQAEGRSLAFLYSTAGKSADSL 1319

Query: 1209 ILYFGEDPARCPFEQA 1224
              YFGEDP RCPFEQ 
Sbjct: 1320 AHYFGEDPVRCPFEQV 1335

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7G6K7|FH3_ORYSJ Formin-like protein 3 OS=Oryza sativa subsp. japonica GN=FH3 PE=2 SV=2

 Score =  507 bits (1306), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 259/417 (62%), Positives = 318/417 (76%), Gaps = 22/417 (5%)

Query: 812  PPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSRSHQTKK 871
            P PPS    ++P PPP  + +    TG              S KGR    ++ +S+  KK
Sbjct: 791  PHPPSSKGLNAPAPPPL-LGRGREATG--------------SAKGR-GIGLAQQSNPPKK 834

Query: 872  --LKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPN--SEKGGKPN 927
              LKPLHW+K+TRA+QGSLW +AQK G  ++AP+ID+SELE+LFS  +    SEKGG   
Sbjct: 835  ASLKPLHWVKVTRAMQGSLWEDAQKQGNQARAPDIDLSELESLFSTAVATNASEKGGTKR 894

Query: 928  QRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKF 987
                  P+   V L+D RRA NCEIML+K+K+PLP+++ ++LAL+ S +D DQVENLIKF
Sbjct: 895  GSAISKPEI--VHLVDMRRANNCEIMLTKIKMPLPDMINAILALDTSVLDNDQVENLIKF 952

Query: 988  CPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSL 1047
            CPTKEE+++LK Y G+KE LGKCEQFFLELMKVPRVESKLRVF+F+I F TQV +LR++L
Sbjct: 953  CPTKEEIEMLKNYNGNKEMLGKCEQFFLELMKVPRVESKLRVFAFRITFSTQVEELRTNL 1012

Query: 1048 NVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKM 1107
              +N A ++V+ S KLR+IMQTIL+LGNALNQGTARG+A+GFRLDSLLKL+DTRARNNKM
Sbjct: 1013 TTINDATKEVKESLKLRQIMQTILTLGNALNQGTARGSAVGFRLDSLLKLSDTRARNNKM 1072

Query: 1108 TLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSE 1167
            TLMHYLCK+L++KLPELLDF +DL  LE ASKIQLK LAEEMQA++KGLEKV QEL+ S 
Sbjct: 1073 TLMHYLCKLLSEKLPELLDFDKDLIHLEAASKIQLKLLAEEMQAINKGLEKVEQELAASV 1132

Query: 1168 NDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQA 1224
            NDGAIS  F + L+ FL  AEAEVR+L SLYS VGRN D+L  YFGEDPARCPFEQ 
Sbjct: 1133 NDGAISVGFREALKSFLDAAEAEVRSLISLYSEVGRNADSLAQYFGEDPARCPFEQV 1189

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9C6S1|FH14_ARATH Formin-like protein 14 OS=Arabidopsis thaliana GN=FH14 PE=3 SV=3

 Score =  504 bits (1297), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/398 (62%), Positives = 309/398 (77%), Gaps = 2/398 (0%)

Query: 827  PPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSRSHQTKKLKPLHWLKLTRAVQG 886
            PPP+    S      P       S   G+GR   ++ + + +   LKPLHW K+TRA +G
Sbjct: 775  PPPLGAKGSNAPPPPPPAGRGRASLGLGRGR-GVSVPTAAPKKTALKPLHWSKVTRAAKG 833

Query: 887  SLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQRVPRGPQSDKVQLIDHRR 946
            SLWA+ QK     +APEID+SELE+LFSA + ++       +R     + +KVQL+D RR
Sbjct: 834  SLWADTQKQENQPRAPEIDISELESLFSA-VSDTTAKKSTGRRGSSISKPEKVQLVDLRR 892

Query: 947  AYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEK 1006
            A NCEIML+K+K+PLP+++ +VLAL+  A+D DQVENLIKFCPTKEEM+LL+ YTGDKE 
Sbjct: 893  ANNCEIMLTKIKIPLPDMLSAVLALDSLALDIDQVENLIKFCPTKEEMELLRNYTGDKEM 952

Query: 1007 LGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRI 1066
            LGKCEQFF+ELMKVPR+E+KLRVF FKI F +QV +L+S LN +N+A ++V+ SAKLR+I
Sbjct: 953  LGKCEQFFMELMKVPRIEAKLRVFGFKITFASQVEELKSCLNTINAATKEVKESAKLRQI 1012

Query: 1067 MQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLD 1126
            MQTIL+LGNALNQGTARG+A+GF+LDSLLKL+DTRARNNKMTLMHYLCK++ +K+PELLD
Sbjct: 1013 MQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLVGEKMPELLD 1072

Query: 1127 FSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRF 1186
            F+ DL  LE ASKI+LK LAEEMQA +KGLEKV QEL  SENDGAIS  F K+L+EFL  
Sbjct: 1073 FANDLVHLEAASKIELKTLAEEMQAATKGLEKVEQELMASENDGAISLGFRKVLKEFLDM 1132

Query: 1187 AEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQA 1224
            A+ EV+TLASLYS VGRN D+L  YFGEDPARCPFEQ 
Sbjct: 1133 ADEEVKTLASLYSEVGRNADSLSHYFGEDPARCPFEQV 1170

Arabidopsis thaliana (taxid: 3702)

>sp|Q84ZL0|FH5_ORYSJ Formin-like protein 5 OS=Oryza sativa subsp. japonica GN=FH5 PE=2 SV=2

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/359 (65%), Positives = 282/359 (78%), Gaps = 13/359 (3%)

Query: 872  LKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQRVP 931
            LKPLHW+K+TRA+QGSLW E Q++ ++    E D+SELE+LF A +P      KPN    
Sbjct: 1198 LKPLHWIKVTRALQGSLWEELQRNDDSQSVSEFDLSELESLFPAAVP------KPNDSSK 1251

Query: 932  R-------GPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENL 984
                    G + +KV LI+ RRA N EIML+KVK+PLP+L+ + LAL+ S +D DQVENL
Sbjct: 1252 SDSRRKSLGSKPEKVHLIELRRANNTEIMLTKVKMPLPDLVSAALALDQSTLDVDQVENL 1311

Query: 985  IKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLR 1044
            IKFCPTKEEM+LLK YTGDKE LGKCEQFFLELMKVPR+ESKLRVFSFKIQF +QV+DLR
Sbjct: 1312 IKFCPTKEEMELLKNYTGDKENLGKCEQFFLELMKVPRMESKLRVFSFKIQFGSQVADLR 1371

Query: 1045 SSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARN 1104
             SLN ++S+ +++R+S KL+ IM+ IL LGN LNQGTARGAA+GFRLDSLLKLTDTRA N
Sbjct: 1372 KSLNTIDSSCDEIRSSLKLKEIMKKILLLGNTLNQGTARGAAVGFRLDSLLKLTDTRATN 1431

Query: 1105 NKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELS 1164
            NKMTLMHYLCKVLA K  +LLDF  DL SLE  SKIQLK LAEEMQA+SKGLEKV  E +
Sbjct: 1432 NKMTLMHYLCKVLAAKSSQLLDFYMDLVSLEATSKIQLKMLAEEMQAVSKGLEKVQLEYN 1491

Query: 1165 MSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQ 1223
             SE+DG +SE F + L+EF   A A+V++L+SL+S VG+  DALI YFGEDP RCPFEQ
Sbjct: 1492 ASESDGPVSEIFREKLKEFTDNAGADVQSLSSLFSEVGKKADALIKYFGEDPVRCPFEQ 1550

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XWS7|FH12_ORYSJ Formin-like protein 12 OS=Oryza sativa subsp. japonica GN=FH12 PE=3 SV=3

 Score =  466 bits (1198), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/389 (60%), Positives = 295/389 (75%), Gaps = 12/389 (3%)

Query: 854  GKGRLSRTISSRSHQTKK---LKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELE 910
            G G L+R++   S  T +   LKPLHW+K+TRA+ GSLWAE QK  +A+   E D+ ELE
Sbjct: 1237 GHG-LTRSLGLNSAATARRSTLKPLHWVKVTRAMHGSLWAEIQKQADANSHSEFDVKELE 1295

Query: 911  NLFSATIPNSEKGGKPNQRVPR-GPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVL 969
            +LF A  P ++ G K +      G + DKV LID RRA N EIML+K+K+PLP++M + L
Sbjct: 1296 SLF-AIAPKTKGGSKSDGASKSLGSKPDKVHLIDLRRANNTEIMLTKIKMPLPDMMSAAL 1354

Query: 970  ALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRV 1029
            AL+DS +DADQ+ENLIKFCPTKEEM+LLK YTGDKE LGKCEQFFLELMKVPRVESK R+
Sbjct: 1355 ALDDSVLDADQLENLIKFCPTKEEMELLKNYTGDKETLGKCEQFFLELMKVPRVESKFRI 1414

Query: 1030 FSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGF 1089
            F+FKIQF +Q+ D+R +L  V+SA E++R S KL+ IM+ IL LGN LNQGT RG A+GF
Sbjct: 1415 FAFKIQFQSQIRDVRKNLLTVSSACEELRGSEKLKVIMEKILFLGNKLNQGTPRGQALGF 1474

Query: 1090 RLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEM 1149
            RLDSLLKLTDTRA N++MTLMH+LCK LADK P LLDF E+  +LE ASK+QLK LAEE 
Sbjct: 1475 RLDSLLKLTDTRANNSRMTLMHFLCKGLADKSPHLLDFYEEFVNLEAASKLQLKALAEEQ 1534

Query: 1150 QALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALI 1209
            QA+ KGL+KV QEL+ SE+DG +SE F K L+EF   + A+VR+L++LY+ VG++ DAL 
Sbjct: 1535 QAVVKGLQKVEQELAASESDGPVSEVFRKTLKEFTDASGADVRSLSALYAEVGKSADALA 1594

Query: 1210 LYFGEDPARCPFEQAQ------IGVIRSA 1232
             YFGEDPA+CPFEQ        +G+ R A
Sbjct: 1595 YYFGEDPAKCPFEQVTSTLLNFVGLFRKA 1623

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1237
356498760	1155	PREDICTED: uncharacterized protein LOC10	0.864	0.926	0.558	0.0
359494891	1149	PREDICTED: formin-like protein 13-like [	0.354	0.381	0.738	0.0
449457979	1304	PREDICTED: LOW QUALITY PROTEIN: formin-l	0.338	0.321	0.743	0.0
449455693	1396	PREDICTED: formin-like protein 18-like [	0.318	0.282	0.766	0.0
449532675	683	PREDICTED: formin-like protein 6-like [C	0.321	0.582	0.766	0.0
357480099	1198	hypothetical protein MTR_4g131020 [Medic	0.338	0.349	0.723	0.0
359476177	1187	PREDICTED: uncharacterized protein LOC10	0.433	0.451	0.601	0.0
296082128	1642	unnamed protein product [Vitis vinifera]	0.447	0.337	0.574	0.0
356564909	1208	PREDICTED: uncharacterized protein LOC10	0.362	0.371	0.686	0.0
255584461	1170	actin binding protein, putative [Ricinus	0.363	0.384	0.774	0.0

>gi|356498760|ref|XP_003518217.1| PREDICTED: uncharacterized protein LOC100786096 [Glycine max]

 Score = 1206 bits (3121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 701/1256 (55%), Positives = 834/1256 (66%), Gaps = 186/1256 (14%)

Query: 1    MALLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQF 60
            MA+LR+LFFRKPPDGLLEI ERVYVF+CCFTTDAW EE+Y+ Y+ GI+GQLRE+ PD+  
Sbjct: 1    MAMLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWNEENYRVYMDGIVGQLRENLPDASI 60

Query: 61   LVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHN 120
            L+FNFREE+TKS MAN++SE DITIMDYPR YEG P+L ME+IHHFLRS ESWLSL QHN
Sbjct: 61   LIFNFREEDTKSQMANIMSEHDITIMDYPRHYEGVPVLKMELIHHFLRSGESWLSLSQHN 120

Query: 121  VLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQL 180
            VL+MHCERGGWPVLAFMLAALLIYRK Y+GE +TLDM+Y+QAP ELL LLSPLNP PSQL
Sbjct: 121  VLLMHCERGGWPVLAFMLAALLIYRKVYTGEQRTLDMVYKQAPHELLHLLSPLNPTPSQL 180

Query: 181  RYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSA 240
            RYL YVSRRNV  +WPPLDRAL LDC+ILR  PNFDG+GGC PIFRIYGQDPF A D++ 
Sbjct: 181  RYLLYVSRRNVALDWPPLDRALMLDCIILRFFPNFDGEGGCHPIFRIYGQDPFSA-DKNP 239

Query: 241  KVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNT 300
            K+LYST KRSK+VR YKQ ECEL+KIDINC IQGDVV+E I+LN +++RE+MMFRV+FNT
Sbjct: 240  KMLYSTPKRSKSVRAYKQGECELIKIDINCHIQGDVVIESINLNGNMDREKMMFRVMFNT 299

Query: 301  AFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAAAAVVAADVSCFEEKGGLPV 360
            AF+RSNILMLN DE+DILW+AK+ FPK+FRAEILFSEMDAAAAV+A   SCFEEK GLP+
Sbjct: 300  AFVRSNILMLNRDEIDILWDAKDHFPKDFRAEILFSEMDAAAAVIADGTSCFEEKEGLPI 359

Query: 361  EAFAKVHEIFSHVDWLDHGSDFALNVLQHINATNLIQEMSDTESPPSAGICSLLQELSPR 420
                   E F+ V            +  H++  N          P +    ++LQ++S  
Sbjct: 360  -------EAFAKVQ----------EIFSHVDWMN----------PKADAALNVLQQMSAS 392

Query: 421  DHQDKKSQSELDNSPKTSPKDYRNMIINASNLIQETSDSGSPPSMIISSLLQELSPRGHQ 480
               D+                                D+ S   M   +LL E SPR  Q
Sbjct: 393  AMNDRL-------------------------------DTVSDQCMENGTLLHETSPRIPQ 421

Query: 481  HKKTHVVDEDSTKSSLPSAVKTQSVLLPKMSPDTDESKANEEPQDPRNALQVCNQSVDNF 540
                          +L  A   QS+   K SPD D S+  ++        Q  + S   +
Sbjct: 422  -------------GNLSEA--RQSLSSTKRSPDNDMSRKEDKANKVEGIPQQPSTSNIIY 466

Query: 541  QKTSKSSQTTSLSCNSVQVSSLSVSGHHDASLAPCHKPLLHDHALSVSAEVTHQIPASPA 600
            Q+T+ SS+ T+ S                                       ++ P  P 
Sbjct: 467  QETAISSERTTES---------------------------------------NKCPTGPT 487

Query: 601  IPDPNLASSCKHEAAGLKSD-SFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFS 659
              D  L +   H A     D SFSP TPP  P      ++SA +V   P   + PP +  
Sbjct: 488  NVDIKLQAP--HPALSSSVDTSFSPRTPPLRPQ-----STSAKEVHDSPRQTESPPSYL- 539

Query: 660  SSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTF 719
                   P   +SK   QDR    S+ P P  + SS+  +S +   T   P+ +   ST 
Sbjct: 540  ------LP--LQSKHQTQDR----SSIPTPGTQLSST-FHSKSPADTISHPSASAITST- 585

Query: 720  PPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQS 779
                     P+P L +   N           PP  T   S+ S PPTPPPPP PPLK+  
Sbjct: 586  --------QPSPLLSSKNVNE---------IPPIRTRLESSPSRPPTPPPPPTPPLKDHR 628

Query: 780  AIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSS-------------------- 819
             +RA PPPPPPPP  SG  A ST++ P  P        SS                    
Sbjct: 629  LVRAKPPPPPPPPCLSGKVAGSTIAPPPPPPPSSDHINSSLQKSPPPPAAPAPPPPPGAP 688

Query: 820  NSSPVPPPPPIAKVVSKTGVASPVPAPPSIS----------PSSGKGR-LSRTISSRSHQ 868
               P P  P      +K G+ S  P P S+S          P+S KGR LSRTISS+++ 
Sbjct: 689  APPPPPGAPAAPPPPAKGGLKSGSPFPLSLSVSGDGNNVSGPTSSKGRILSRTISSKNN- 747

Query: 869  TKKLKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQ 928
            TKKLKPLHWLKL+RAVQGSLWAE QKSGE SKAPEIDMSELE+LFSA +P S    K N 
Sbjct: 748  TKKLKPLHWLKLSRAVQGSLWAETQKSGEVSKAPEIDMSELESLFSAAVP-SGPAKKSNV 806

Query: 929  RVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFC 988
            +   GP+SDKVQLI+HRRAYNCEIMLSKVKVPL +LM SVLALE+SA+D DQVENLIKFC
Sbjct: 807  QSSAGPKSDKVQLIEHRRAYNCEIMLSKVKVPLHDLMSSVLALEESALDTDQVENLIKFC 866

Query: 989  PTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLN 1048
            PTKEEM+LLKGY G+KEKLG+CEQF +ELMKVPRVESKLRVFSFKIQF++QVSDLR+SL+
Sbjct: 867  PTKEEMELLKGYNGEKEKLGRCEQFLMELMKVPRVESKLRVFSFKIQFNSQVSDLRNSLS 926

Query: 1049 VVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMT 1108
            VVN+A+E++RNS KL+RIMQTILSLGNALNQGTA+G+AIGFRLDSLLKLT+TRAR+ KMT
Sbjct: 927  VVNAASEEIRNSVKLKRIMQTILSLGNALNQGTAKGSAIGFRLDSLLKLTETRARDKKMT 986

Query: 1109 LMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSEN 1168
            LMHYLCKVL D+LPE+LDFS+DL +LEPA+KIQLKFLAEEMQA++KGLEKVVQELS SEN
Sbjct: 987  LMHYLCKVLDDQLPEVLDFSKDLANLEPAAKIQLKFLAEEMQAINKGLEKVVQELSTSEN 1046

Query: 1169 DGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQA 1224
            DG ISE F K L++FL  AEA+VR+LASLYS+VGRNVD LILYFGEDPARCPFEQ 
Sbjct: 1047 DGPISETFRKKLKDFLGSAEADVRSLASLYSSVGRNVDKLILYFGEDPARCPFEQV 1102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494891|ref|XP_002265146.2| PREDICTED: formin-like protein 13-like [Vitis vinifera]

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/439 (73%), Positives = 377/439 (85%), Gaps = 1/439 (0%)

Query: 1   MALLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQF 60
           MALLR+LF+RKPPDGLLEI +RV+VF+CCFTTDAWEEE+YK YI GI+GQLR+H PD+  
Sbjct: 1   MALLRKLFYRKPPDGLLEICDRVHVFDCCFTTDAWEEENYKVYIRGIVGQLRDHIPDASI 60

Query: 61  LVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHN 120
           LVFNF E E +S +AN LS+FD+TIMDYPR YEGCPLLTMEVIHHFLRS+ESWLSLG +N
Sbjct: 61  LVFNFHEGEGQSQIANFLSDFDMTIMDYPRHYEGCPLLTMEVIHHFLRSSESWLSLGPNN 120

Query: 121 VLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQL 180
           +L+MHCERGGWP+LAFMLAALLIYRK Y+GE KTL+MIY+Q+P ELLQ LSPLNPVPSQ 
Sbjct: 121 LLLMHCERGGWPILAFMLAALLIYRKHYTGEQKTLEMIYKQSPCELLQCLSPLNPVPSQT 180

Query: 181 RYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSA 240
           RYLQY+SRRN+ SEWPPLDRALTLDCVI+R +P+FDG+GGCRPIFRIYGQDPF+  DR+ 
Sbjct: 181 RYLQYISRRNMASEWPPLDRALTLDCVIIRLVPDFDGEGGCRPIFRIYGQDPFLVADRTP 240

Query: 241 KVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNT 300
           K+L+ST K+SK +R YKQ ECELVKIDINC IQGDVVLECI+LNDD E EEM+FR++FNT
Sbjct: 241 KLLFSTPKKSKTIRHYKQVECELVKIDINCHIQGDVVLECINLNDDTEYEEMIFRLMFNT 300

Query: 301 AFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAAAAVVAADVSCFEEKGGLPV 360
           AFIRSNILMLN DE+DILWNAK+ FPK+FRAE+LFS+MDAAA+VV  D+SCFEEK GLPV
Sbjct: 301 AFIRSNILMLNRDEIDILWNAKDQFPKDFRAEVLFSDMDAAASVVTVDLSCFEEKDGLPV 360

Query: 361 EAFAKVHEIFSHVDWLDHGSDFALNVLQHINATNLIQEMSDTESPPSAGICSLLQELSPR 420
           EAFAKVHEIFSHVDWLD  +D ALNVLQ I A+N++Q   +T+SP S    + LQEL   
Sbjct: 361 EAFAKVHEIFSHVDWLDPKTDAALNVLQQITASNVVQGRVETDSPGSVETSTSLQELITE 420

Query: 421 DHQDK-KSQSELDNSPKTS 438
             Q K K  S  DN+ K S
Sbjct: 421 KVQGKQKPASSEDNAEKFS 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457979|ref|XP_004146725.1| PREDICTED: LOW QUALITY PROTEIN: formin-like protein 6-like [Cucumis sativus]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/421 (74%), Positives = 361/421 (85%), Gaps = 2/421 (0%)

Query: 1   MALLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQF 60
           MALLR+LFFRKPPDGLLEI ERVYVF+CCFTTDAW+EE+Y+ Y+GGI+ QLREH  D+ F
Sbjct: 1   MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWKEENYEVYLGGIVAQLREHLADASF 60

Query: 61  LVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHN 120
           LVFNFR  E +S M ++LS++D+TIMDYP+QYEGCP+LTMEV+HHFLRS ESWLSLGQ+N
Sbjct: 61  LVFNFRRLEMQSQMGDILSKYDMTIMDYPQQYEGCPVLTMEVVHHFLRSCESWLSLGQNN 120

Query: 121 VLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQL 180
           VL+MHCERGGWPVLAFML+ALLIYRKQYSGE +TLDM+YRQAPRELL  LSP+NP+PSQL
Sbjct: 121 VLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHFLSPMNPIPSQL 180

Query: 181 RYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSA 240
           RYLQYV+RRNV  EWPP+DRALTLDC+ILR IPNFDG+GGCRPIFRIYGQDP + +DR+ 
Sbjct: 181 RYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTP 240

Query: 241 KVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVF-N 299
           KVLYST KRSK VR +KQAE ELVKID+ C IQGDVVLECI+L+DD+E EEMMFR +F N
Sbjct: 241 KVLYSTPKRSKNVRAFKQAESELVKIDVXCHIQGDVVLECITLHDDMEFEEMMFRAMFNN 300

Query: 300 TAFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAAAAVVAADVSCFEEKGGLP 359
           TAFIRSNIL+LN +E+D LWNAK+ FPK+FRAEILFSEMDA    VA DV C EE+ GLP
Sbjct: 301 TAFIRSNILILNREEIDTLWNAKDKFPKDFRAEILFSEMDAGTRTVANDVLCIEEE-GLP 359

Query: 360 VEAFAKVHEIFSHVDWLDHGSDFALNVLQHINATNLIQEMSDTESPPSAGICSLLQELSP 419
           +EAFAKV EIFSHVDWLD  +D ALNVL  +NA N+ QE  D  S  S  + SLLQ  SP
Sbjct: 360 MEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKPDNNSLWSTQVSSLLQSASP 419

Query: 420 R 420
           R
Sbjct: 420 R 420

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455693|ref|XP_004145586.1| PREDICTED: formin-like protein 18-like [Cucumis sativus]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/398 (76%), Positives = 359/398 (90%)

Query: 1   MALLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQF 60
           MAL R+ F+RKPPDGLLEISERVYVF+CCFTT+  EE++YK YIGGI+GQLRE   D+ F
Sbjct: 1   MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEDEYKVYIGGIVGQLRESLTDASF 60

Query: 61  LVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHN 120
           +VFNFRE E  SL+ N+LS +D+T+MDYPRQYEGCPLLTME+IHHFLRS+ESWLSLGQ N
Sbjct: 61  MVFNFREGEHHSLITNILSVYDMTVMDYPRQYEGCPLLTMEMIHHFLRSSESWLSLGQQN 120

Query: 121 VLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQL 180
           VL+MHCERGGWPVLAFMLAALLIYRKQY+GE KTLDMIY+QAPRELLQL+SPLNP+PSQL
Sbjct: 121 VLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQL 180

Query: 181 RYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSA 240
           RYLQYVSRRNV SEWPPLDRALTLDC+I+R IPN DG+GGCRPIFRIYGQDPF+A DR++
Sbjct: 181 RYLQYVSRRNVGSEWPPLDRALTLDCIIIRCIPNMDGEGGCRPIFRIYGQDPFMAADRTS 240

Query: 241 KVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNT 300
           KVL+ST K+SK VR YKQ +CELVKIDI+C IQGDVVLECISL++DLEREEMMFRV+FNT
Sbjct: 241 KVLFSTPKKSKLVRQYKQVDCELVKIDIHCHIQGDVVLECISLDNDLEREEMMFRVMFNT 300

Query: 301 AFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAAAAVVAADVSCFEEKGGLPV 360
           AFIRSNILMLN D++DILW+AK+ FPK+FRAE+LFSEMD++A++++ ++   EEK GLP+
Sbjct: 301 AFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDSSASLISIELPNIEEKDGLPI 360

Query: 361 EAFAKVHEIFSHVDWLDHGSDFALNVLQHINATNLIQE 398
           EAFA+V EIFS+VDWL   +D ALNVLQ I A+NL+QE
Sbjct: 361 EAFARVQEIFSNVDWLSPKADAALNVLQKITASNLLQE 398

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532675|ref|XP_004173306.1| PREDICTED: formin-like protein 6-like [Cucumis sativus]

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/398 (76%), Positives = 359/398 (90%)

Query: 1   MALLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQF 60
           MAL R+ F+RKPPDGLLEISERVYVF+CCFTT+  EE++YK YIGGI+GQLRE   D+ F
Sbjct: 1   MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEDEYKVYIGGIVGQLRESLTDASF 60

Query: 61  LVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHN 120
           +VFNFRE E  SL+ N+LS +D+T+MDYPRQYEGCPLLTME+IHHFLRS+ESWLSLGQ N
Sbjct: 61  MVFNFREGEHHSLITNILSVYDMTVMDYPRQYEGCPLLTMEMIHHFLRSSESWLSLGQQN 120

Query: 121 VLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQL 180
           VL+MHCERGGWPVLAFMLAALLIYRKQY+GE KTLDMIY+QAPRELLQL+SPLNP+PSQL
Sbjct: 121 VLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQL 180

Query: 181 RYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSA 240
           RYLQYVSRRNV SEWPPLDRALTLDC+I+R IPN DG+GGCRPIFRIYGQDPF+A DR++
Sbjct: 181 RYLQYVSRRNVGSEWPPLDRALTLDCIIIRCIPNMDGEGGCRPIFRIYGQDPFMAADRTS 240

Query: 241 KVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNT 300
           KVL+ST K+SK VR YKQ +CELVKIDI+C IQGDVVLECISL++DLEREEMMFRV+FNT
Sbjct: 241 KVLFSTPKKSKLVRQYKQVDCELVKIDIHCHIQGDVVLECISLDNDLEREEMMFRVMFNT 300

Query: 301 AFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAAAAVVAADVSCFEEKGGLPV 360
           AFIRSNILMLN D++DILW+AK+ FPK+FRAE+LFSEMD++A++++ ++   EEK GLP+
Sbjct: 301 AFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDSSASLISIELPNIEEKDGLPI 360

Query: 361 EAFAKVHEIFSHVDWLDHGSDFALNVLQHINATNLIQE 398
           EAFA+V EIFS+VDWL   +D ALNVLQ I A+NL+QE
Sbjct: 361 EAFARVQEIFSNVDWLSPKADAALNVLQKITASNLLQE 398

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480099|ref|XP_003610335.1| hypothetical protein MTR_4g131020 [Medicago truncatula] gi|355511390|gb|AES92532.1| hypothetical protein MTR_4g131020 [Medicago truncatula]

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/420 (72%), Positives = 359/420 (85%), Gaps = 1/420 (0%)

Query: 1   MALLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQF 60
           MA+LR+LF+RKPPDGLLEI +RVYVF+CCFTT+AW EE YK Y+ GI+GQLRE+ PD+  
Sbjct: 1   MAMLRKLFYRKPPDGLLEICDRVYVFDCCFTTEAWNEEKYKVYMDGIVGQLRENVPDASI 60

Query: 61  LVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHN 120
           LVFNFREEETKSLMAN++SE+DITIMDYPR YEGCP+L ME+IHHFLRS+ESWLSLGQHN
Sbjct: 61  LVFNFREEETKSLMANIISEYDITIMDYPRHYEGCPVLKMELIHHFLRSSESWLSLGQHN 120

Query: 121 VLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQL 180
           VL+MHCERGGWPV+AFMLAALLIYRK YSGE++TLDMIYRQ+P +LL LL+PLNP+PSQL
Sbjct: 121 VLLMHCERGGWPVMAFMLAALLIYRKVYSGEHRTLDMIYRQSPHQLLHLLTPLNPIPSQL 180

Query: 181 RYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSA 240
           RYLQYVSRRNV  +WPPLDRAL LDC+ILR  PNFDG+GGC P+FRIYGQDPF A D+S 
Sbjct: 181 RYLQYVSRRNVALDWPPLDRALMLDCIILRFFPNFDGEGGCHPLFRIYGQDPFSA-DKSP 239

Query: 241 KVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNT 300
           K+LYS  KRSK VR YKQ ECEL+KIDINC IQGDVV+E I+LNDD+E E MMFRV+FNT
Sbjct: 240 KMLYSMPKRSKNVRAYKQGECELIKIDINCHIQGDVVIEGINLNDDMEHEMMMFRVMFNT 299

Query: 301 AFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAAAAVVAADVSCFEEKGGLPV 360
           AF+RSNILMLN DE+D+LW+AK+ FPK+FRAEILFSE+DAAAAV+  + S FEEK GLP+
Sbjct: 300 AFVRSNILMLNRDEIDVLWDAKDHFPKDFRAEILFSEIDAAAAVILDNTSFFEEKDGLPI 359

Query: 361 EAFAKVHEIFSHVDWLDHGSDFALNVLQHINATNLIQEMSDTESPPSAGICSLLQELSPR 420
           EAFAKV EIFSHVDW++  +D ALNVLQ I+ + ++ +  D  S       + L E  P+
Sbjct: 360 EAFAKVQEIFSHVDWMNPKADAALNVLQQISTSAIMNDKLDKVSDQHVETATSLGETGPK 419

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476177|ref|XP_002283272.2| PREDICTED: uncharacterized protein LOC100249142 [Vitis vinifera]

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/595 (60%), Positives = 431/595 (72%), Gaps = 59/595 (9%)

Query: 1   MALLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQF 60
           MAL R+ F+RKPPDGLLEISERVYVF+CCFTTD  E+E+YK Y+G I+GQLREH PD+ F
Sbjct: 1   MALFRKFFYRKPPDGLLEISERVYVFDCCFTTDVLEDEEYKVYMGSIVGQLREHFPDASF 60

Query: 61  LVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHN 120
           +VFNFRE +++S ++++LSE+D+T+MDYPR YEGCPLLTME+IHHFLRS+ESWLSLGQ N
Sbjct: 61  MVFNFREGDSQSQISSILSEYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQN 120

Query: 121 VLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQL 180
           VL+MHCER GWP+LAFMLAALLIYRKQY+GE KTLDMIY+QAPRELLQL+SPLNP+PSQL
Sbjct: 121 VLLMHCERSGWPILAFMLAALLIYRKQYTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQL 180

Query: 181 RYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSA 240
           RYLQYVSRRNV SEWPPLDRALTLDCVILR IPN DG+GGCRPIFRIYGQDPF+  DR+ 
Sbjct: 181 RYLQYVSRRNVGSEWPPLDRALTLDCVILRIIPNLDGEGGCRPIFRIYGQDPFMVADRTP 240

Query: 241 KVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNT 300
           KVL+ST KRSK VR YKQ +CELVKIDI+C IQGDVVLECISL +D+EREEMMFRV+FNT
Sbjct: 241 KVLFSTPKRSKTVRHYKQEDCELVKIDIHCHIQGDVVLECISLEEDMEREEMMFRVMFNT 300

Query: 301 AFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAAAAVVAADVSCFEEKGGLPV 360
           AFIRSNILMLN DE+DILWN+K+ FPK+FRAE+LFSEMD+  +++  D+   EEK GLP+
Sbjct: 301 AFIRSNILMLNRDEIDILWNSKDQFPKDFRAEVLFSEMDSGNSLITIDLEGVEEKDGLPM 360

Query: 361 EAFAKVHEIFSHVDWLDHGSDFALNVLQHINATNLIQEMSDTESPPSAGICSLLQELSPR 420
           EAFAKV EIFS+VDWLD  +D A NVLQ I A+N++QE+ +T+S  S     LLQELSP 
Sbjct: 361 EAFAKVQEIFSNVDWLDPKTDVAFNVLQQITASNVLQEL-ETDSAQSGETVGLLQELSPE 419

Query: 421 DHQDKKSQSELDNSPKTSPKDYRNMIINASNLIQETSDSGSPPSMIISSLLQELSPRGHQ 480
             +DK         PK  PK   N I              S  SM +          G Q
Sbjct: 420 KVEDK---------PK--PKAAENNI-------------SSTTSMAL----------GKQ 445

Query: 481 HKKTHVVDEDSTKSSLPSAVKTQSVLLPKMSPDTDESKANEEPQDPRNALQVCNQSVDNF 540
           H              + SA         K S D +  +   +PQ+ + ALQ   QS    
Sbjct: 446 H--------------MTSA---------KPSVDANLIRRKIDPQELQVALQRPAQSKIIS 482

Query: 541 QKTSKSSQTTSLS-CNSVQVSSLSVSGHHDASLAPCHKPLLHDHALSVSAEVTHQ 594
           Q+  ++  +  +S  NS+Q S + +S +H A  A     LLHDHA  +  E  HQ
Sbjct: 483 QRIPQTPISNPVSNSNSLQGSPVPISRYHSAPSALGITALLHDHAAPIGQEGRHQ 537

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082128|emb|CBI21133.3| unnamed protein product [Vitis vinifera]

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/634 (57%), Positives = 442/634 (69%), Gaps = 80/634 (12%)

Query: 1   MALLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQF 60
           MAL R+ F+RKPPDGLLEISERVYVF+CCFTTD  E+E+YK Y+G I+GQLREH PD+ F
Sbjct: 9   MALFRKFFYRKPPDGLLEISERVYVFDCCFTTDVLEDEEYKVYMGSIVGQLREHFPDASF 68

Query: 61  LVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHN 120
           +VFNFRE +++S ++++LSE+D+T+MDYPR YEGCPLLTME+IHHFLRS+ESWLSLGQ N
Sbjct: 69  MVFNFREGDSQSQISSILSEYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQN 128

Query: 121 VLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQL 180
           VL+MHCER GWP+LAFMLAALLIYRKQY+GE KTLDMIY+QAPRELLQL+SPLNP+PSQL
Sbjct: 129 VLLMHCERSGWPILAFMLAALLIYRKQYTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQL 188

Query: 181 RYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSA 240
           RYLQYVSRRNV SEWPPLDRALTLDCVILR IPN DG+GGCRPIFRIYGQDPF+  DR+ 
Sbjct: 189 RYLQYVSRRNVGSEWPPLDRALTLDCVILRIIPNLDGEGGCRPIFRIYGQDPFMVADRTP 248

Query: 241 KVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNT 300
           KVL+ST KRSK VR YKQ +CELVKIDI+C IQGDVVLECISL +D+EREEMMFRV+FNT
Sbjct: 249 KVLFSTPKRSKTVRHYKQEDCELVKIDIHCHIQGDVVLECISLEEDMEREEMMFRVMFNT 308

Query: 301 AFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAAAAVVAADVSCFEEKGGLPV 360
           AFIRSNILMLN DE+DILWN+K+ FPK+FRAE+LFSEMD+  +++  D+   EEK GLP+
Sbjct: 309 AFIRSNILMLNRDEIDILWNSKDQFPKDFRAEVLFSEMDSGNSLITIDLEGVEEKDGLPM 368

Query: 361 EAFAKVHEIFSHVDWLDHGSDFALNVLQHINATNLIQEMSDTESPPSAGICSLLQELSPR 420
           EAFAKV EIFS+VDWLD  +D A NVLQ I A+N++QE+ +T+S  S     LLQELSP 
Sbjct: 369 EAFAKVQEIFSNVDWLDPKTDVAFNVLQQITASNVLQEL-ETDSAQSGETVGLLQELSPE 427

Query: 421 DHQDKKSQSELDNSPKTSPKDYRNMIINASNLIQETSDSGSPPSMIISSLLQELSPRGHQ 480
             +DK         PK  PK   N I              S  SM +          G Q
Sbjct: 428 KVEDK---------PK--PKAAENNI-------------SSTTSMAL----------GKQ 453

Query: 481 HKKTHVVDEDSTKSSLPSAVKTQSVLLPKMSPDTDESKANEEPQDPRNALQVCNQSVDNF 540
           H              + SA         K S D +  +   +PQ+ + ALQ   QS    
Sbjct: 454 H--------------MTSA---------KPSVDANLIRRKIDPQELQVALQRPAQSKIIS 490

Query: 541 QKTSKSSQTTSLS-CNSVQVSSLSVSGHHDASLAPCHKPLLHDHALSVSAEVTHQIPASP 599
           Q+  ++  +  +S  NS+Q S + +S +H A  A     LLHDH             A+P
Sbjct: 491 QRIPQTPISNPVSNSNSLQGSPVPISRYHSAPSALGITALLHDH-------------AAP 537

Query: 600 AIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAP 633
              +P  +   +H++        S   P PPP P
Sbjct: 538 IGQEPGASLQGRHQS--------SLMAPRPPPLP 563

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564909|ref|XP_003550689.1| PREDICTED: uncharacterized protein LOC100799319 [Glycine max]

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/453 (68%), Positives = 372/453 (82%), Gaps = 4/453 (0%)

Query: 3   LLRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLV 62
           +LR+LFFRKPPDGLLEI ERVYVF+CCFTTDAW EE+Y+ Y+ GI+GQLRE+ PD+  L+
Sbjct: 1   MLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWNEENYRVYMDGIVGQLRENLPDASILI 60

Query: 63  FNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVL 122
           FNFREE+TKS MAN++SE+DITIMDYPR YEG P+L ME+IHHFLRS ESWLSL QHNVL
Sbjct: 61  FNFREEDTKSQMANIMSEYDITIMDYPRHYEGVPVLKMELIHHFLRSGESWLSLSQHNVL 120

Query: 123 MMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRY 182
           +MHCERGGWPVLAFMLAALLIYRK Y+GE +TLDM+YRQAP ELL LLSPLNP+PSQLRY
Sbjct: 121 LMHCERGGWPVLAFMLAALLIYRKVYTGEQRTLDMVYRQAPHELLHLLSPLNPIPSQLRY 180

Query: 183 LQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKV 242
           L YVSRRNV  +WPPLDRAL LDC+I+R  PNF+G+GGC PIFRIYGQDPF A D++ K+
Sbjct: 181 LLYVSRRNVALDWPPLDRALMLDCIIIRFFPNFEGEGGCHPIFRIYGQDPFSA-DKNPKM 239

Query: 243 LYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNTAF 302
           LYST KRSK VR YKQ ECEL+KIDINC IQGDVV+E I+LN +++RE+MMFRV+FNTAF
Sbjct: 240 LYSTPKRSKNVRAYKQGECELIKIDINCHIQGDVVIESINLNGNMDREKMMFRVMFNTAF 299

Query: 303 IRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMDAAAAVVAADVSCFEEKGGLPVEA 362
           +RSNILMLN DE+DILW+AK+ FPK+FRAEILFSEMDAAAAV+A   SCF EK GLP+EA
Sbjct: 300 VRSNILMLNRDEIDILWDAKDHFPKDFRAEILFSEMDAAAAVIADGTSCF-EKEGLPIEA 358

Query: 363 FAKVHEIFSHVDWLDHGSDFALNVLQHINATNLIQEMSDTESPPSAGICSLLQELSPRDH 422
           FAKV EIFSHVDW++   D ALNVLQ + A+ +   + DT S       +LL E SPR  
Sbjct: 359 FAKVQEIFSHVDWMNPKDDAALNVLQQMRASAMNDRL-DTVSDQYVENGTLLHEKSPRTP 417

Query: 423 QDKKSQSELD-NSPKTSPKDYRNMIINASNLIQ 454
           Q   S++    +S K SP + ++   + +N ++
Sbjct: 418 QGNLSEARQGLSSTKRSPDNDKSRKDDKTNKVE 450

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584461|ref|XP_002532961.1| actin binding protein, putative [Ricinus communis] gi|223527271|gb|EEF29427.1| actin binding protein, putative [Ricinus communis]

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/465 (77%), Positives = 396/465 (85%), Gaps = 15/465 (3%)

Query: 775  LKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPP----I 830
            LKE +A+RA PPPPPPPPL+SG +A+ TVSS   P  PPP +L SNSS  P  PP     
Sbjct: 649  LKENTAVRARPPPPPPPPLHSGQAATPTVSSTMPPPPPPPSTLFSNSSHAPSAPPPPLPF 708

Query: 831  AKVVSKTG-----------VASPVPAPPSISPSSGKGRLSRTISSRSHQTKKLKPLHWLK 879
             K +SK G             +P    P +S SS KGRLSRTISSRS QTKKLKPLHWLK
Sbjct: 709  GKGLSKMGSNEDYNLSQSPSPAPPTPAPPLSSSSIKGRLSRTISSRSQQTKKLKPLHWLK 768

Query: 880  LTRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQRVPRGPQSDKV 939
            LTRAVQGSLWAEAQKS EASKAPEIDMSELENLFSA+I N++   K   R   GP+ DKV
Sbjct: 769  LTRAVQGSLWAEAQKSEEASKAPEIDMSELENLFSASISNADNKKKSIVRGLPGPKIDKV 828

Query: 940  QLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKG 999
            QLI+HRRAYNCEIMLSKVKVPL ELM SVLALED+A+D DQ+ENLIKFCPTKEEM+LLKG
Sbjct: 829  QLIEHRRAYNCEIMLSKVKVPLNELMSSVLALEDTALDVDQLENLIKFCPTKEEMELLKG 888

Query: 1000 YTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRN 1059
            Y G+KEKLGKCEQFFLELM+VPRVESKLRVFSFK+QFH+QVSDLR SLNVVNS AE++RN
Sbjct: 889  YIGEKEKLGKCEQFFLELMQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRN 948

Query: 1060 SAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAD 1119
            SAKL+++MQTILSLGNALNQGTARG+AIGFRLDSLLKLTDTRARNNK+TLMHYLCKVLAD
Sbjct: 949  SAKLKKVMQTILSLGNALNQGTARGSAIGFRLDSLLKLTDTRARNNKITLMHYLCKVLAD 1008

Query: 1120 KLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKI 1179
            KLPELLDFS+DL SLE ASKIQLKFLAEEMQA+SKGLEK+VQELS SE+DG IS+NF KI
Sbjct: 1009 KLPELLDFSKDLASLESASKIQLKFLAEEMQAISKGLEKIVQELSTSESDGPISDNFRKI 1068

Query: 1180 LREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQA 1224
            L+EFLRFAEAEVR+LASLYS VGRNVDALILYFGEDPARCPFEQ 
Sbjct: 1069 LKEFLRFAEAEVRSLASLYSGVGRNVDALILYFGEDPARCPFEQV 1113

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1237
TAIR|locus:2034471	1230	AFH14 "Formin Homology 14" [Ar	0.297	0.299	0.666	1.4e-255
TAIR|locus:2160329	722	AT5G07770 [Arabidopsis thalian	0.278	0.476	0.581	8.3e-104
TAIR|locus:2177801	464	FH19 "formin homolog 19" [Arab	0.277	0.739	0.544	2.5e-90
DICTYBASE|DDB_G0285589	1087	forH "formin H" [Dictyostelium	0.275	0.313	0.296	1e-42
FB|FBgn0025641	1455	DAAM "Dishevelled Associated A	0.275	0.234	0.337	1.3e-41
UNIPROTKB|F1NH09	1053	F1NH09 "Uncharacterized protei	0.276	0.324	0.270	5.5e-39
DICTYBASE|DDB_G0289763	1220	forF "formin homology domain-c	0.289	0.293	0.291	5.8e-39
DICTYBASE|DDB_G0282297	1126	forB "formin homology domain-c	0.268	0.294	0.310	1.4e-38
UNIPROTKB|E2R292	1068	DAAM1 "Uncharacterized protein	0.279	0.323	0.274	3.3e-38
UNIPROTKB|A2VDK3	1068	DAAM1 "Dishevelled associated	0.279	0.323	0.271	7.1e-38

TAIR|locus:2034471 AFH14 "Formin Homology 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 1251 (445.4 bits), Expect = 1.4e-255, Sum P(3) = 1.4e-255
 Identities = 248/372 (66%), Positives = 301/372 (80%)

Query:   854 GKGRLSRTISSRSHQTKK--LKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELEN 911
             G GR  R +S  +   KK  LKPLHW K+TRA +GSLWA+ QK     +APEID+SELE+
Sbjct:   800 GLGR-GRGVSVPTAAPKKTALKPLHWSKVTRAAKGSLWADTQKQENQPRAPEIDISELES 858

Query:   912 LFSATIPNSEKGGKPNQRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLAL 971
             LFSA    + K     +R     + +KVQL+D RRA NCEIML+K+K+PLP+++ +VLAL
Sbjct:   859 LFSAVSDTTAKKST-GRRGSSISKPEKVQLVDLRRANNCEIMLTKIKIPLPDMLSAVLAL 917

Query:   972 EDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFS 1031
             +  A+D DQVENLIKFCPTKEEM+LL+ YTGDKE LGKCEQFF+ELMKVPR+E+KLRVF 
Sbjct:   918 DSLALDIDQVENLIKFCPTKEEMELLRNYTGDKEMLGKCEQFFMELMKVPRIEAKLRVFG 977

Query:  1032 FKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRL 1091
             FKI F +QV +L+S LN +N+A ++V+ SAKLR+IMQTIL+LGNALNQGTARG+A+GF+L
Sbjct:   978 FKITFASQVEELKSCLNTINAATKEVKESAKLRQIMQTILTLGNALNQGTARGSAVGFKL 1037

Query:  1092 DSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQA 1151
             DSLLKL+DTRARNNKMTLMHYLCK++ +K+PELLDF+ DL  LE ASKI+LK LAEEMQA
Sbjct:  1038 DSLLKLSDTRARNNKMTLMHYLCKLVGEKMPELLDFANDLVHLEAASKIELKTLAEEMQA 1097

Query:  1152 LSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILY 1211
              +KGLEKV QEL  SENDGAIS  F K+L+EFL  A+ EV+TLASLYS VGRN D+L  Y
Sbjct:  1098 ATKGLEKVEQELMASENDGAISLGFRKVLKEFLDMADEEVKTLASLYSEVGRNADSLSHY 1157

Query:  1212 FGEDPARCPFEQ 1223
             FGEDPARCPFEQ
Sbjct:  1158 FGEDPARCPFEQ 1169

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005819 "spindle" evidence=IDA

GO:0008017 "microtubule binding" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0009574 "preprophase band" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2160329 AT5G07770 [Arabidopsis thaliana (taxid:3702)]

 Score = 1009 (360.2 bits), Expect = 8.3e-104, Sum P(2) = 8.3e-104
 Identities = 208/358 (58%), Positives = 267/358 (74%)

Query:   869 TKK--LKPLHWLKLTRAVQGSLWAEAQ-KSGEASKAPEIDMSELENLFSATIPNSEKGGK 925
             TK+  LKPLHW+K+TRA+QGSLW E Q + GE+  A E+D+ E+E LFS        G K
Sbjct:   187 TKRSSLKPLHWVKITRALQGSLWDELQIQYGESQTAIELDVPEIETLFSV-------GAK 239

Query:   926 PNQRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLI 985
             P    P+ P+ +KV LID +RA N  + L  +K+PLP++M +V+A+++S +D DQ+ENLI
Sbjct:   240 PR---PK-PKPEKVPLIDLKRANNTIVNLKILKMPLPDMMAAVMAMDESVLDVDQIENLI 295

Query:   986 KFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRS 1045
             + CPTKEEM+LLK YTGDK  LGK EQ  LELMKVPR E+KLRV SFKI F T+++  R 
Sbjct:   296 QLCPTKEEMELLKNYTGDKATLGKSEQCLLELMKVPRFEAKLRVLSFKIPFGTKITKFRK 355

Query:  1046 SLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNN 1105
              LNVVNSA E+VR+S  L+ IM+ IL LGN LNQGTARG+A+GFRLDSLL L++TRA NN
Sbjct:   356 MLNVVNSACEEVRSSQMLKEIMKIILFLGNTLNQGTARGSAVGFRLDSLLILSETRADNN 415

Query:  1106 KMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSM 1165
             KMTLMHYLCKVLA K  +LLDF +DL SLE   +I LK LAEE+ A++KGLEK+ QEL+ 
Sbjct:   416 KMTLMHYLCKVLASKAADLLDFHKDLQSLESTLEINLKSLAEEIHAITKGLEKLKQELTA 475

Query:  1166 SENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQ 1223
             SE DG +S+ F K+L++F+  AE +V T+++LYS+   N DAL  YFGEDP   PFE+
Sbjct:   476 SETDGPVSQVFRKLLKDFISSAETQVATVSTLYSSARINADALAHYFGEDPNHYPFEK 533

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2177801 FH19 "formin homolog 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 203/373 (54%), Positives = 255/373 (68%)

Query:   864 SRSHQTK-KLKPLHWLKLTRAVQGSLWAEAQKSGEASK--------APEIDMSELENLFS 914
             SR  +TK  LKPLHW+K TRA+ GSLW E Q+  E           A E+ +SE+E +FS
Sbjct:    69 SRPPKTKCSLKPLHWVKKTRALPGSLWDELQRRQECRDIEDEQILCAIELSVSEIETIFS 128

Query:   915 ATIPNSEKGGKPNQRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDS 974
                     G KP    P+ P+ +KV LID RRA N EI L  + + LP+++ + +A+++S
Sbjct:   129 L-------GAKPK---PK-PEPEKVPLIDLRRATNTEIRLMLLNIRLPDMIAAAMAMDES 177

Query:   975 AIDA-DQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFL---ELMKVPRVESKLRVF 1030
              +D  DQ+ENLI   PTKE+M  L  YTGDK   G CEQ F    E++KVPRVESKLRVF
Sbjct:   178 RLDDFDQIENLINLFPTKEDMKFLLTYTGDK---GNCEQLFQYLQEVVKVPRVESKLRVF 234

Query:  1031 SFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFR 1090
             SFKIQF TQ++ L   LN VNSA E++R S KL+ IM+ IL LGN LNQGT RG A+GFR
Sbjct:   235 SFKIQFGTQITKLTKGLNAVNSACEEIRTSQKLKDIMENILCLGNILNQGTGRGRAVGFR 294

Query:  1091 LDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQ 1150
             LDSLL L++TRA N+KMTLMHYLCKVLA K  +LLDF +DL SLE ASKIQLK LAEE+Q
Sbjct:   295 LDSLLILSETRADNSKMTLMHYLCKVLASKASDLLDFHKDLESLESASKIQLKSLAEEIQ 354

Query:  1151 ALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALIL 1210
             A++KGLEK+ QEL+ SE DG +S+ F K+L+EF+  AE +V T+ +LY     N +AL  
Sbjct:   355 AITKGLEKLKQELTASETDGPVSQVFRKLLKEFISNAETQVATVMALYYPARGNAEALAH 414

Query:  1211 YFGEDPARCPFEQ 1223
             YFG      PFEQ
Sbjct:   415 YFGY---HYPFEQ 424

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0007015 "actin filament organization" evidence=RCA

GO:0045010 "actin nucleation" evidence=IDA

GO:0051016 "barbed-end actin filament capping" evidence=IDA

DICTYBASE|DDB_G0285589 forH "formin H" [Dictyostelium discoideum (taxid:44689)]

 Score = 483 (175.1 bits), Expect = 1.0e-42, Sum P(2) = 1.0e-42
 Identities = 105/354 (29%), Positives = 194/354 (54%)

Query:   871 KLKPLHWLKLTRA-VQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQR 929
             K++  +W+ +    VQG+ W    K  E S    +D  ELE+LFSA  P  +   K   R
Sbjct:   632 KMRNFNWITIPALKVQGTFW---DKLDETSFIQSLDKVELESLFSAKAPTVKVESKQLTR 688

Query:   930 VPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCP 989
                      V +ID ++A NC IML   K+P  +L +  + L++     +    L++F P
Sbjct:   689 ------KVVVTVIDMKKANNCAIMLQHFKIPNEQLKKMQIMLDEKHFSQENAIYLLQFAP 742

Query:   990 TKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNV 1049
             TKE+++ +K Y GD+ +LG  EQ+ L +M +P+++S+L+ F FK +F   V DL   +  
Sbjct:   743 TKEDIEAIKEYQGDQMQLGAAEQYMLTVMDIPKLDSRLKAFIFKQKFEGLVEDLVPDIKA 802

Query:  1050 VNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFR-LDSLLKLTDTRARNNKMT 1108
             + +A+ +++ S +L  I++ IL++GN +N  T RG A GF+ L++L K+ D R+ +NK++
Sbjct:   803 IKAASLELKKSKRLSDILKFILAIGNYVNGSTTRGGAFGFKVLETLPKMRDARSNDNKLS 862

Query:  1109 LMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSEN 1168
             L+H+L K L D++PE+ +   +L  +E AS++ L  +  +   + + ++ + ++     N
Sbjct:   863 LLHFLAKTLQDRIPEIWNIGAELPHIEHASEVSLNNIISDSSEIKRSIDLIERDFVPMIN 922

Query:  1169 DGAISENFSKI--LREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCP 1220
             D   + +   I  + EF + A+ + + +      + +  + +  YFGE  +  P
Sbjct:   923 DPLFAHDKHWIHKITEFQKIAKVQYQRIEKEIDEMNKAFEEITSYFGEPKSTQP 976

GO:0031268 "pseudopodium organization" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0051638 "barbed-end actin filament uncapping" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051015 "actin filament binding" evidence=IDA

GO:0046847 "filopodium assembly" evidence=IMP

GO:0045010 "actin nucleation" evidence=IDA

GO:0031589 "cell-substrate adhesion" evidence=IMP

GO:0030838 "positive regulation of actin filament polymerization" evidence=IDA

GO:0030175 "filopodium" evidence=IDA

GO:0017049 "GTP-Rho binding" evidence=IPI

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0006928 "cellular component movement" evidence=IMP

GO:0005522 "profilin binding" evidence=IPI

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0016043 "cellular component organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

FB|FBgn0025641 DAAM "Dishevelled Associated Activator of Morphogenesis" [Drosophila melanogaster (taxid:7227)]

 Score = 494 (179.0 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
 Identities = 121/358 (33%), Positives = 199/358 (55%)

Query:   869 TKKLKPLHWLKLTRA-VQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPN---SEKGG 924
             T  LK  +W KL  A +QG++W+E     E+     +++  ++ LFSA   N   +  G 
Sbjct:   949 TNPLKSFNWSKLPDAKLQGTVWSELD---ESKLYNNMELESIDKLFSAYQKNGVSATDGS 1005

Query:   925 KPNQRVPRGPQSDKV-QLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSA-IDADQVE 982
               + RV       KV  +ID RRA NC I+LSK+K+   E+ +++L+++ +  +  D VE
Sbjct:  1006 YEDLRVTGKAAKQKVLSVIDGRRAQNCTILLSKLKMSDMEISKAILSMDSNEQLQLDMVE 1065

Query:   983 NLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSD 1042
              L+KF P+ EE  LL  ++ D E L + ++F  E+ K+P  E +L+   +K +F   ++D
Sbjct:  1066 QLLKFTPSAEERALLDEHSEDIESLARADRFLYEISKIPHYEQRLKSLHYKKRFMLTIND 1125

Query:  1043 LRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRA 1102
             L   +  V  A+ +V  S +LR++++ +L+LGN +N+G ARG A GFRL SL +L DT++
Sbjct:  1126 LVPRITSVMEASREVARSRRLRKLLELVLALGNYMNRG-ARGNASGFRLASLNRLADTKS 1184

Query:  1103 RNNK-MTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQ 1161
                K  TL+HYL +V+  K  +LL   +D+  +  ASK+ L  + +++Q L  GL  V +
Sbjct:  1185 SAAKGTTLLHYLVQVIERKFKDLLKLEDDIPHVREASKVSLGEMDKDIQMLRTGLADVAR 1244

Query:  1162 ELSMSENDGAISEN--FSKILREFLRFAEAEVR--TLASLYSAVGRNVDALILYFGED 1215
             E+    + G   +   F  ++REF   A+A VR   L   +  +    D  +  FGED
Sbjct:  1245 EIEFHRSSGPAQQGDRFLPVMREF--HAQASVRFAELEDKFQDMKTRFDRAVRLFGED 1300

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=NAS

GO:0035017 "cuticle pattern formation" evidence=NAS

GO:0035152 "regulation of tube architecture, open tracheal system" evidence=IMP

GO:0051017 "actin filament bundle assembly" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP

GO:0051489 "regulation of filopodium assembly" evidence=IDA

GO:0050770 "regulation of axonogenesis" evidence=IDA

GO:0044295 "axonal growth cone" evidence=IDA

GO:0051491 "positive regulation of filopodium assembly" evidence=IMP

UNIPROTKB|F1NH09 F1NH09 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 441 (160.3 bits), Expect = 5.5e-39, Sum P(2) = 5.5e-39
 Identities = 95/351 (27%), Positives = 191/351 (54%)

Query:   869 TKKLKPLHWLKLTR-AVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPN 927
             T  LK  +W KL    + G++W +     +A     +D+ +LE  FSA     +K    +
Sbjct:   593 TNALKSFNWSKLPENKLAGTVWTDID---DAKVFKILDLEDLERTFSA-YQRQQKEDAID 648

Query:   928 QRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSA-IDADQVENLIK 986
               +    +  ++ +ID RRA NC I+LS++K+   E+ R++L +++   +  D +E L+K
Sbjct:   649 DTLSSRHKVKELSVIDGRRAQNCNILLSRLKLSNEEIKRAILTMDEQEDLPKDMLEQLLK 708

Query:   987 FCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSS 1046
             F P K ++DLL+ +  + +++ K ++F  E+ ++   + +L+   FK +F  +V++++  
Sbjct:   709 FVPEKGDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPK 768

Query:  1047 LNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNK 1106
             +  + + ++ V  S+ L+++++ +L+ GN +N+G  RG A GF++ SL K+ DT++  +K
Sbjct:   769 VEAIRAGSKAVLQSSSLQQLLEVVLAFGNYMNKGQ-RGNAFGFKISSLNKIADTKSSIDK 827

Query:  1107 -MTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSM 1165
              +TL+HYL  ++  K P++L   E+L  +  A+K+ +  L +E+  L  GL  V  EL  
Sbjct:   828 NITLLHYLITIVEKKYPKVLRLHEELRDIPQAAKVNMTELEKEVNTLRSGLRAVETELDF 887

Query:  1166 SEND-GAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGED 1215
              ++      + F  ++ +F+  A      +  L +         + +FGED
Sbjct:   888 QKSQVQQTGDKFVSVVSQFITLASFSFSDVEDLLAEAKELFSKAVKHFGED 938

GO:0003779 "actin binding" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

DICTYBASE|DDB_G0289763 forF "formin homology domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 448 (162.8 bits), Expect = 5.8e-39, Sum P(2) = 5.8e-39
 Identities = 108/371 (29%), Positives = 190/371 (51%)

Query:   866 SHQTKKLKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGK 925
             S  T K+K   W K+     G         G   K   +++ E+ENLF A   NS+K  +
Sbjct:   660 SKPTTKVKQFQWTKIPNKKLGE--TIFTNLGTI-KTDWLNVGEIENLFFAPEANSQKKLE 716

Query:   926 PNQRVPRGPQSDK---VQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVE 982
              + +  +   S K   V +ID +++ N  I LSK K PL E+  ++  L++     + ++
Sbjct:   717 ASDK--KSTSSTKPGTVSVIDPKKSQNLAIYLSKFKCPLEEIKTALYTLDEDIFTMESLK 774

Query:   983 NLIKFCPTKEEMDLLKGYT---GDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQ 1039
              L ++ PT E+M+ +K Y    G+ + L K E F LE+  V  +  +++ F  KI F  +
Sbjct:   775 ALEQYLPTDEDMEAIKDYLKKDGELKMLTKAEHFLLEMDSVSSLAERVKSFYLKILFPDK 834

Query:  1040 VSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTD 1099
             + +++  L +     + ++NS    ++M+ +L +GN LN GTARG   GF+LD+LLKL D
Sbjct:   835 LKEIKPDLELFTKTIKDIKNSKNFLKVMEVVLIIGNFLNGGTARGDCFGFKLDALLKLAD 894

Query:  1100 TRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKV 1159
             T+  NNK  L+ Y+   L  K P+ L F +DL+ ++   KI +  ++ ++  L K L+ V
Sbjct:   895 TKTANNKSNLLVYIISELEQKFPDSLKFMDDLSGVQECVKISMNTISADLNLLKKDLDAV 954

Query:  1160 VQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARC 1219
                +   +     S  FS  + +F++ A  E++     +    +N   L + FGE+ ++ 
Sbjct:   955 NNGIGKMKRSKEESYFFST-MDDFIKDANIEIKIAFDQFQEAEKNFQELAVLFGEE-SKI 1012

Query:  1220 PFEQAQIGVIR 1230
             P E+  + + R
Sbjct:  1013 PSEEFFVTINR 1023

GO:0005522 "profilin binding" evidence=ISS

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0016043 "cellular component organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

DICTYBASE|DDB_G0282297 forB "formin homology domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 448 (162.8 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
 Identities = 111/358 (31%), Positives = 193/358 (53%)

Query:   871 KLKPLHWLKLTR-AVQGSLWAEAQKSGEASKAPEIDMSELENLF-----SATIPNSEKGG 924
             K+  L W K+    ++ S+W   +      +       +LE LF     +AT P +  GG
Sbjct:   621 KMVGLQWKKVNNNVIENSIWMNVKDYNLNDQ-----FKQLEELFQVKKPTATTPTAPVGG 675

Query:   925 KPNQRVPRGPQSDKV------QLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDA 978
               N  V  G  S  +       ++D +R+    IMLS+ K+  P+L +++  L++S ++ 
Sbjct:   676 ASNVAVGGGSGSKSIVSTPTISILDPKRSQAIMIMLSRFKISFPDLSKAITNLDESKLNL 735

Query:   979 DQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHT 1038
             +  ++L+KF P+ EE++LLK    D    GK EQF  EL K+ R+  KL  F FK +  T
Sbjct:   736 EDAKSLLKFVPSSEEIELLK--EEDPSCFGKPEQFLWELSKINRISEKLECFIFKQKLST 793

Query:  1039 QVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLT 1098
             Q+ +L   +N +   + + +N+    +I++ +LSLGN +N GT RG   GF+LDSL  L 
Sbjct:   794 QIEELTPDINALLKGSMETKNNKSFHQILEIVLSLGNFINGGTPRGDIYGFKLDSLSGLL 853

Query:  1099 DTRA-RNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLE 1157
             D R+  ++K+TLM +L + L +K P LL+F ++ T+++ A ++ ++ L  E+ +L KGL 
Sbjct:   854 DCRSPSDSKVTLMTWLIQFLENKHPSLLEFHQEFTAIDEAKRVSIQNLRSEVASLKKGLT 913

Query:  1158 KVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGED 1215
              +  E+  SE  GA S+    IL  F+  +   V  +   ++    + ++ + ++GED
Sbjct:   914 LLTNEVEKSE--GA-SKT---ILSGFVGKSTDAVTLIEKQFNTALESFNSTVQFYGED 965

GO:0005522 "profilin binding" evidence=ISS

GO:0015629 "actin cytoskeleton" evidence=ISS

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0016043 "cellular component organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|E2R292 DAAM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 456 (165.6 bits), Expect = 3.3e-38, Sum P(2) = 3.3e-38
 Identities = 97/354 (27%), Positives = 199/354 (56%)

Query:   869 TKKLKPLHWLKLTR-AVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPN 927
             T  LK  +W KL    ++G++W E   S +  K   +D+ +LE  FSA     ++    +
Sbjct:   607 TNALKSFNWSKLPENKLEGTVWTEIDDS-KVFKI--LDLEDLERTFSAYQRQQKEADAID 663

Query:   928 QRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSA-IDADQVENLIK 986
               +    +  ++ +ID RRA NC I+LS++K+   E+ R++L +++   +  D +E L+K
Sbjct:   664 DTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLK 723

Query:   987 FCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSS 1046
             F P K ++DLL+ +  + +++ K ++F  E+ ++   + +L+   FK +F  +V++++  
Sbjct:   724 FVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPK 783

Query:  1047 LNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNK 1106
             +  + S +E+V  S+ L+++++ +L+ GN +N+G  RG A GF++ SL K+ DT++  +K
Sbjct:   784 VEAIRSGSEEVFKSSALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIADTKSSIDK 842

Query:  1107 -MTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSM 1165
              +TL+HYL  ++ +K P++L+ +E+L  +  A+K+ +  L +E+  L  GL+ V  EL  
Sbjct:   843 NITLLHYLITIVENKYPKVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVEMELEY 902

Query:  1166 SENDGAI-SENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPAR 1218
              ++      + F  ++ +F+  A      +  L +         + +FGE+  +
Sbjct:   903 QKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGK 956

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|A2VDK3 DAAM1 "Dishevelled associated activator of morphogenesis 1" [Bos taurus (taxid:9913)]

 Score = 453 (164.5 bits), Expect = 7.1e-38, Sum P(2) = 7.1e-38
 Identities = 96/354 (27%), Positives = 199/354 (56%)

Query:   869 TKKLKPLHWLKLTR-AVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPN 927
             T  LK  +W KL    ++G++W E   + +  K   +D+ +LE  FSA     ++    +
Sbjct:   607 TNALKSFNWSKLPENKLEGTVWTEIDDT-KVFKV--LDLEDLERTFSAYQRQQKEADAID 663

Query:   928 QRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSA-IDADQVENLIK 986
               +    +  ++ +ID RRA NC I+LS++K+   E+ R++L +++   +  D +E L+K
Sbjct:   664 DTLGSKLKVRELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLK 723

Query:   987 FCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSS 1046
             F P K ++DLL+ +  + +++ K ++F  E+ ++   + +L+   FK +F  +V++++  
Sbjct:   724 FVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPK 783

Query:  1047 LNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNK 1106
             +  + S +E+V  S  L+++++ +L+ GN +N+G  RG A GF++ SL K+ DT++  +K
Sbjct:   784 VEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIADTKSSIDK 842

Query:  1107 -MTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSM 1165
              +TL+HYL  ++ +K P++L+ +E+L  +  A+K+ +  L +E+  L  GL+ V  EL  
Sbjct:   843 NITLLHYLITIVENKYPKVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVEMELEY 902

Query:  1166 SENDGAI-SENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPAR 1218
              ++  +   + F  ++ +F+  A      +  L +         + +FGE+  +
Sbjct:   903 QKSQPSQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGK 956

GO:0003779 "actin binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032770001 hypothetical protein LOC100249142 (611 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1237
pfam02181	372	pfam02181, FH2, Formin Homology 2 Domain	1e-130
smart00498	392	smart00498, FH2, Formin Homology 2 Domain	5e-62
pfam10409	129	pfam10409, PTEN_C2, C2 domain of PTEN tumour-suppr	6e-44
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-21
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-21
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-18
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-17
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-17
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-16
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-16
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	9e-16
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-12
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	9e-12
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-11
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-11
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	4e-11
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-09
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	3e-09
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	4e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-09
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-09
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	6e-09
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	7e-09
pfam04652	315	pfam04652, DUF605, Vta1 like	9e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-08
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	1e-08
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-08
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-08
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-08
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	4e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-08
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	6e-08
PHA03379	935	PHA03379, PHA03379, EBNA-3A; Provisional	6e-08
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	9e-08
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-07
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-07
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-07
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-07
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-06
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	3e-06
pfam03251	458	pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd prote	5e-06
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	6e-06
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	6e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	7e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	7e-06
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	9e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-05
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	1e-05
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	1e-05
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-05
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-05
pfam13254	414	pfam13254, DUF4045, Domain of unknown function (DU	2e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-05
pfam12737	418	pfam12737, Mating_C, C-terminal domain of homeodom	3e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-05
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	5e-05
pfam05308	248	pfam05308, Mito_fiss_reg, Mitochondrial fission re	5e-05
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	7e-05
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	7e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	8e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	8e-05
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	8e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	9e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	9e-05
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	9e-05
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	9e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-04
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	1e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-04
pfam12737	418	pfam12737, Mating_C, C-terminal domain of homeodom	1e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-04
pfam03326	500	pfam03326, Herpes_TAF50, Herpesvirus transcription	1e-04
pfam05539	408	pfam05539, Pneumo_att_G, Pneumovirinae attachment	1e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	3e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	3e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	3e-04
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	4e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	4e-04
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	4e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	5e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-04
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	6e-04
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	6e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	6e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	7e-04
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	8e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	9e-04
pfam01690	460	pfam01690, PLRV_ORF5, Potato leaf roll virus readt	9e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.001
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	0.001
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.001
pfam03326	500	pfam03326, Herpes_TAF50, Herpesvirus transcription	0.001
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.001
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.001
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.001
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	0.001
PHA03418	230	PHA03418, PHA03418, hypothetical E4 protein; Provi	0.001
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	0.001
pfam12316	202	pfam12316, Dsh_C, Segment polarity protein disheve	0.001
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	0.001
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.002
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.002
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.002
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.002
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	0.002
pfam00859	295	pfam00859, CTF_NFI, CTF/NF-I family transcription	0.002
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.002
PTZ00441	576	PTZ00441, PTZ00441, sporozoite surface protein 2 (	0.002
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.003
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.003
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	0.003
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.003
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.003
COG3266	292	COG3266, DamX, Uncharacterized protein conserved i	0.003
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.004
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.004
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.004
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	0.004
pfam07777	189	pfam07777, MFMR, G-box binding protein MFMR	0.004
PRK10672	361	PRK10672, PRK10672, rare lipoprotein A; Provisiona	0.004

>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain

 Score =  402 bits (1036), Expect = e-130
 Identities = 146/356 (41%), Positives = 228/356 (64%), Gaps = 5/356 (1%)

Query: 869  TKKLKPLHWLKLTRA-VQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPN 927
             KKLKPLHW K+  A  +G++W E     E S   ++D+SELE LFSA      K  K  
Sbjct: 8    KKKLKPLHWDKVNPAQDRGTVWDELD---EESFEKDLDLSELEELFSAKAKKK-KSKKSE 63

Query: 928  QRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKF 987
            ++     +  ++ ++D +R+ N  I+L K+K+P  E+++++L +++S +  + +ENL+K 
Sbjct: 64   KKSSSKKKKKEISVLDPKRSQNIAILLRKLKLPPEEIVQAILEMDESVLGLELLENLLKM 123

Query: 988  CPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSL 1047
             PTKEE+  LK Y GD  KLG+ EQF LEL K+PR+E +L    FK  F  +V +L+ SL
Sbjct: 124  APTKEELKKLKEYKGDPSKLGRAEQFLLELSKIPRLEERLEALLFKSTFEEEVEELKPSL 183

Query: 1048 NVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKM 1107
              + +A+E++R S K +++++ IL+LGN +N GT RG A GF+L SLLKL+DT++ +NK 
Sbjct: 184  ETLEAASEELRESRKFKKLLELILALGNYMNSGTRRGNAKGFKLSSLLKLSDTKSTDNKT 243

Query: 1108 TLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSE 1167
            TL+HYL K++ +KLP+LLDFS +L+ +E A+K+ L+ L ++++ L KGL+K+ +EL +S 
Sbjct: 244  TLLHYLVKIIREKLPDLLDFSSELSHVEKAAKVDLEQLEKDVKELEKGLKKLERELELSA 303

Query: 1168 NDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQ 1223
             D    + F + ++EFL  AE ++  L SL          L  YFGEDP     E+
Sbjct: 304  LDEHPDDKFVEKMKEFLEEAEEKLDKLESLLKEAMELFKELTEYFGEDPKETSPEE 359

Length = 372

>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain

 Score =  216 bits (553), Expect = 5e-62
 Identities = 115/381 (30%), Positives = 193/381 (50%), Gaps = 29/381 (7%)

Query: 868  QTKKLKPLHWLKL-TRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKP 926
              KKLKPLHW KL    + G++W +  +        E D+ ELE LFSA     EK    
Sbjct: 6    PKKKLKPLHWDKLNPSDLSGTVWDKIDEE------SEGDLDELEELFSAK----EKTKSA 55

Query: 927  NQRVPRG------PQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQ 980
            ++ V           S + +++D +R+ N  I+L K+ +   E+  ++L  ++  +  D 
Sbjct: 56   SKDVSEKKSILKKKASQEFKILDPKRSQNLAILLRKLHMSYEEIKEAILEGDEDVLSVDL 115

Query: 981  VENLIKFCPTKEEMDLLKGYTGDK-EKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQ 1039
            +E L+K+ PTKEE+  L+ Y  +  E+L + EQF L +  +P +E +L    FK  F  +
Sbjct: 116  LEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIPYLEERLNALLFKANFEEE 175

Query: 1040 VSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTD 1099
            V DL+  +  V +A E++R S K R++++ IL++GN +N G+ RG A GF+L SLLKL+D
Sbjct: 176  VEDLKPQIEKVEAACEELRESKKFRKLLELILAIGNYMNGGSRRGQAYGFKLSSLLKLSD 235

Query: 1100 TRARNNKMTLMHYLCKVLADK------LPELLD--FSEDLTSLEPASKIQLKFLAEEMQA 1151
             ++ +NK TL+H+L K++  K       PE LD  F E +     A+K +   L +++  
Sbjct: 236  VKSADNKTTLLHFLVKIIRKKYLGGLSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSD 295

Query: 1152 LSKGLEKVVQELSMSENDGAISE---NFSKILREFLRFAEAEVRTLASLYSAVGRNVDAL 1208
            L    EK+V+       D +  E   +F++ L+EF + AE  ++          + V   
Sbjct: 296  LKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKKLVKET 355

Query: 1209 ILYFGEDPARCPFEQAQIGVI 1229
              Y      +     +    +
Sbjct: 356  TEYEQSSSRQKERNPSMDFEV 376

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain. Length = 392

>gnl|CDD|220736 pfam10409, PTEN_C2, C2 domain of PTEN tumour-suppressor protein

 Score =  155 bits (393), Expect = 6e-44
 Identities = 52/141 (36%), Positives = 72/141 (51%), Gaps = 12/141 (8%)

Query: 197 PLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTY 256
           P  + L L  +IL  IPNF   GGCRP  RIY  D  V          STSK+ + ++ Y
Sbjct: 1   PPPKPLFLKSIILHGIPNFKSGGGCRPYIRIYNNDKKV----------STSKKYEILKKY 50

Query: 257 KQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNTAFIRSNILMLNLDEVD 316
            Q +  ++       +QGDV++E          EE MFR  FNT+FI  N L    +E+D
Sbjct: 51  -QQKDCIILFPKGLPVQGDVLIEFYHKGL-KLSEEKMFRFWFNTSFIEDNRLTFPKNELD 108

Query: 317 ILWNAKELFPKEFRAEILFSE 337
                K+ FP +F+ E++FSE
Sbjct: 109 KADKDKKRFPPDFKVELVFSE 129

This is the C2 domain-like domain, in greek key form, of the PTEN protein, phosphatidyl-inositol triphosphate phosphatase, and it is the C-terminus. This domain may well include a CBR3 loop which means it plays a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc (pfam00782) suggesting that the C2 domain productively positions the catalytic part of the protein onto the membrane. Length = 129

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  100 bits (251), Expect = 3e-21
 Identities = 65/311 (20%), Positives = 88/311 (28%), Gaps = 30/311 (9%)

Query: 596  PASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPP 655
            P  PA      A + +         S  P  P          A  +   P    P   PP
Sbjct: 2570 PPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPP 2629

Query: 656  HHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLST-------AP 708
                ++               + RD P+             G  +  S          A 
Sbjct: 2630 SPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAAR 2689

Query: 709  LPAPATAKSTFPPPPPPPPPPTPPLKTPVF------------NRNTDASFSTPSPPASTV 756
                +      PPPPPP P P P                   +    A+ + P+ PA   
Sbjct: 2690 PTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPA 2749

Query: 757  TLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPP--PPPPLYSGSSASSTVSSP------TI 808
            T    + P  PP    PP     A  A  PP     P + S S +  ++ SP        
Sbjct: 2750 TPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPA 2809

Query: 809  PLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSG---KGRLSRTISSR 865
             +  P  +L   +SP  P PP            P P PPS+         G + R   SR
Sbjct: 2810 AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSR 2869

Query: 866  SHQTKKLKPLH 876
            S   K   P  
Sbjct: 2870 SPAAKPAAPAR 2880

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 99.6 bits (248), Expect = 7e-21
 Identities = 56/283 (19%), Positives = 83/283 (29%), Gaps = 26/283 (9%)

Query: 596  PASPAIPDPNLASSCKHEAAGLKSDSF------------SPTTPPPPPAPRPSIASSASK 643
                A P P   ++ +  +  L +                P  P  PP      A +   
Sbjct: 2714 ALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPA 2773

Query: 644  VPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTS 703
             P+  PP +L     +S   +            +    P      PA   + +      +
Sbjct: 2774 APAAGPPRRLTRPAVASLSES-----------RESLPSPWDPADPPAAVLAPAAALPPAA 2822

Query: 704  LSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSS 763
                PLP P +A+ T PPPPP PPPP+ PL   V             P  S        +
Sbjct: 2823 SPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSV---APGGDVRRRPPSRSPAAKPAAPA 2879

Query: 764  PPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSP 823
             P      +P +   +   A PP  P  P    +           P   P P       P
Sbjct: 2880 RPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939

Query: 824  VPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSRS 866
             PP  P          +  VP P   +   G+  + R    + 
Sbjct: 2940 QPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQP 2982

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 92.3 bits (229), Expect = 1e-18
 Identities = 59/310 (19%), Positives = 93/310 (30%), Gaps = 31/310 (10%)

Query: 596  PASPAIP-DPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPP----- 649
             A P  P D           + L  D+ +P  PPP P+P  +          PPP     
Sbjct: 2595 SARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRD 2654

Query: 650  ---PPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPL------PAPETSSSGTNS 700
               P ++     +                 + R    +   L      P P  +      
Sbjct: 2655 DPAPGRVSRPRRARR-LGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPH 2713

Query: 701  STSLSTAPLPAPATAKSTFPPPP----PPPPPPTPPLKTPVFNRNTDASFSTPSPPASTV 756
            +   +T   P PA A+   P  P    PP  P  P             + + P  PA   
Sbjct: 2714 ALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPA 2773

Query: 757  TLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPS 816
              +         P      + + ++ +   P  PP      +A+   ++      PPP S
Sbjct: 2774 APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS 2833

Query: 817  LSSNSSPVPPPPPIAKV-----------VSKTGVASPVPAPPSISPSSGKGRLSRTISSR 865
                + P PP PP   +           V +   +    A P+        RL+R   SR
Sbjct: 2834 AQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSR 2893

Query: 866  SHQTKKLKPL 875
            S ++  L P 
Sbjct: 2894 STESFALPPD 2903

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 88.1 bits (218), Expect = 3e-17
 Identities = 66/260 (25%), Positives = 84/260 (32%), Gaps = 38/260 (14%)

Query: 623  SPTTPPPPPAPRPSIASSAS--KVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRD 680
            SP   P   A RP++ S  S    P PPP P+  PH   S+ P         ++      
Sbjct: 2678 SPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPA 2737

Query: 681  KPSSATPLPAPETSSSGTNSSTSLSTA--PLPAPATAKSTFPPP---------------- 722
             P+       P T       +   +TA  P PAP  A +  PP                 
Sbjct: 2738 APAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRES 2797

Query: 723  ---PPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQS 779
               P  P  P   +  P       AS + P PP ++     T+ PP P PPP       S
Sbjct: 2798 LPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQ--PTAPPPPPGPPPPSLPLGGS 2855

Query: 780  AIRAG-----PPPPPPPPLYSGSS-------ASSTVSSPTIPLAPPPPSLSSNSSPVPPP 827
                G     PP   P    +  +       A   VS  T   A PP        P  PP
Sbjct: 2856 VAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPP 2915

Query: 828  PPIAKVVSKTGVASPVPAPP 847
            PP  +         P P PP
Sbjct: 2916 PPQPQPQPPPP-PQPQPPPP 2934

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 87.7 bits (217), Expect = 3e-17
 Identities = 75/340 (22%), Positives = 101/340 (29%), Gaps = 41/340 (12%)

Query: 596  PASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSI------ASSASKVPSPPP 649
            P     PDP+   +    A  +  D   P   P  P     I      AS  +  P PP 
Sbjct: 2498 PGGGGPPDPDAPPAPSRLAPAILPDE--PVGEPVHPRMLTWIRGLEELASDDAGDPPPPL 2555

Query: 650  PPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPL 709
            PP  PP     S P   P  + S+  +  R +   A P  A   +             P 
Sbjct: 2556 PPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPS 2615

Query: 710  PAPATAKSTFPPPPPPPPPPTPP-------------LKTPVFNRNTDASFSTPSPPASTV 756
            P P       P    P PPP  P                P      D +    S P    
Sbjct: 2616 PLP-------PDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRAR 2668

Query: 757  TLSTTSSPPTPP----PPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAP 812
             L   +   +PP         P        A PPPPPP P  +  +  S    P  P A 
Sbjct: 2669 RLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAA 2728

Query: 813  PPPSLSSNSSPVPPPPPIAKVVS---------KTGVASPVPAPPSISPSSGKGRLSRTIS 863
               S +  ++P PP  P                T    P PAPP+   +    RL+R   
Sbjct: 2729 RQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788

Query: 864  SRSHQTKKLKPLHWLKLTRAVQGSLWAEAQKSGEASKAPE 903
            +   ++++  P  W            A A     +   P 
Sbjct: 2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL 2828

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 85.2 bits (211), Expect = 2e-16
 Identities = 70/295 (23%), Positives = 92/295 (31%), Gaps = 26/295 (8%)

Query: 593 HQIPASPAIPDPNLASSCKHEAAGLKSDSFSPTT--PPPPPAPRPSIASSASKVPSPPPP 650
            + PA+ +   P  + S    A+  +  S +P     P PP P P  AS     P P P 
Sbjct: 77  TEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPAS-----PPPSPA 131

Query: 651 PQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATP-----LPAPETSSSGTNSSTSLS 705
           P L         P   P      +        S A       LP      +    S+  +
Sbjct: 132 PDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPA 191

Query: 706 TAPLPAPATAKSTFPPPPPPP-----PPPTP-PLKTPVFNRNTDASFSTPSPPASTVTLS 759
             P   P  A S  PP    P       P P P ++   +    +S S+ S  +      
Sbjct: 192 EPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGP 251

Query: 760 TTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYS-----GSSASSTVSSPTIPLAPPP 814
               P   P P   P +   A     P   P P  S       S S + SSP    AP  
Sbjct: 252 ENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSS 311

Query: 815 PSLSSNSSPVPP---PPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSRS 866
           P  SS+SS           +   S  G A      PS SPS  +       SS  
Sbjct: 312 PRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPR 366

Length = 1352

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 83.1 bits (205), Expect = 7e-16
 Identities = 59/242 (24%), Positives = 80/242 (33%), Gaps = 37/242 (15%)

Query: 589  AEVTHQIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPP 648
            A ++    + P+  DP    +     A     + SP  P PPP    S   +A   P  P
Sbjct: 2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP---TSAQPTAPPPPPGP 2845

Query: 649  PPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAP 708
            PPP LP         +  P     +       +P S +P   P   +             
Sbjct: 2846 PPPSLPL------GGSVAPGGDVRR-------RPPSRSPAAKPAAPARPPVRR------- 2885

Query: 709  LPAPATAKSTFP---PPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPP 765
            L  PA ++ST     PP  P  PP P    P   +        P PP           PP
Sbjct: 2886 LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPP-----------PP 2934

Query: 766  TPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVP 825
             PP P  P         AG P    P  + G+     V+ P   +  P PS  + +S  P
Sbjct: 2935 PPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTP 2994

Query: 826  PP 827
            P 
Sbjct: 2995 PL 2996

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 82.9 bits (205), Expect = 9e-16
 Identities = 59/292 (20%), Positives = 79/292 (27%), Gaps = 29/292 (9%)

Query: 596 PASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSP-PPPPQLP 654
           P  PA P              L SDS                       P P P      
Sbjct: 22  PRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPA 81

Query: 655 PHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPAT 714
               S+   +       S +       P  ++P P P T           S  P PAP  
Sbjct: 82  NESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPA-------SPPPSPAPDL 134

Query: 715 AKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPP 774
           ++   P   P PPP   P            +    S   + + LS+       P  P   
Sbjct: 135 SEMLRPVGSPGPPPAASPPAAG--ASPAAVASDAASSRQAALPLSSPEETARAPSSPPAE 192

Query: 775 LKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSS------------ 822
               +   A  P PP       +SASS   +P    A    + SS+SS            
Sbjct: 193 PPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPE 252

Query: 823 ---PVPPPPPIA----KVVSKTGVASPVPAPPSISPSSGKGRLSRTISSRSH 867
              P+P P PI        +           P+ S SS + R      S   
Sbjct: 253 NECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPG 304

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 72.9 bits (179), Expect = 1e-12
 Identities = 61/288 (21%), Positives = 94/288 (32%), Gaps = 33/288 (11%)

Query: 595 IPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLP 654
              +      + A+S +  A  L S   +   P  PPA  P     A+   SP PP +  
Sbjct: 154 AAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAA--ASPRPPRRSS 211

Query: 655 PHHFSSSCPAHFP---------HTKESKSHMQDRDK---PSSATPLPAPETSSSGT---N 699
           P   S+S PA  P          +    S  +       P +  PLP P   +  T    
Sbjct: 212 PISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWE 271

Query: 700 SSTSLSTAPLPAPATAKSTFPPPPPPPPP------PTPPLKTPVFNRNTDASFSTPSPPA 753
           +S     +  P PA++ S+     P P P      P P       + ++    S+ S  +
Sbjct: 272 ASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSS 331

Query: 754 STVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPP-PPPPPLYSGSSASSTVSSPTIPLA- 811
           S+ +    +  P P P   P             P   P P  + SS +++   PT   A 
Sbjct: 332 SSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRAR 391

Query: 812 --PPPPSLSSNSSPV------PPPPPIAKVVSKTGVASPVPAPPSISP 851
                 +   +++         P P  A   S    A      PS  P
Sbjct: 392 AAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGEP 439

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 69.1 bits (169), Expect = 9e-12
 Identities = 47/236 (19%), Positives = 72/236 (30%), Gaps = 37/236 (15%)

Query: 624 PTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPS 683
                P   P P+ A+ A+  P+P  PP  P    +++  A       +      R  P+
Sbjct: 376 TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA------RRSPA 429

Query: 684 SATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTD 743
                 A + S+ G   + + + AP  APA A     P    P P               
Sbjct: 430 PEALAAARQASARGPGGAPAPAPAPAAAPAAAA---RPAAAGPRPVAAA----------- 475

Query: 744 ASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTV 803
                 + PA     +  ++ P P     PP +E     A P P  P    +G  A S  
Sbjct: 476 ----AAAAPAR----AAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP 527

Query: 804 SSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLS 859
              T        +L+   +  P P            A+  P      P +    L 
Sbjct: 528 DPATADPDDAFETLAPAPAAAPAPRA---------AAATEPVVAPRPPRASASGLP 574

Length = 700

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 68.3 bits (167), Expect = 2e-11
 Identities = 47/248 (18%), Positives = 61/248 (24%), Gaps = 39/248 (15%)

Query: 613 EAAGLKSDSF-SPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKE 671
           EAA    + F  P   P   A      S    V              ++           
Sbjct: 12  EAAAEGGEFFPRPPATPGDAADDLLSGSQGQLVSDS--------AELAAVTVVA---GAA 60

Query: 672 SKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTP 731
           +    +    P       AP   S  T + +  + AP         T P P  P PPP  
Sbjct: 61  ACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPT 120

Query: 732 PLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPP 791
           P                 SPP           P   P   +      S        PP  
Sbjct: 121 P--------------PPASPP-----------PSPAPDLSEMLRPVGSPGPPPAASPPAA 155

Query: 792 PLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISP 851
                + AS   SS     A P  S    +     PP      +    ASP P   S   
Sbjct: 156 GASPAAVASDAASSR--QAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPI 213

Query: 852 SSGKGRLS 859
           S+     +
Sbjct: 214 SASASSPA 221

Length = 1352

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 68.1 bits (167), Expect = 2e-11
 Identities = 44/216 (20%), Positives = 74/216 (34%), Gaps = 13/216 (6%)

Query: 614 AAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESK 673
           AAG +      ++ PP  A RP  A+ A+      P P       + +  A  P     +
Sbjct: 594 AAGGEGPPAPASSGPPEEAARP--AAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPE 651

Query: 674 SHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPL 733
            H +    P ++        + +G  +  +   AP PA   A +   P  P P P   P 
Sbjct: 652 HHPKHVAVPDASDG-GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPP 710

Query: 734 KTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQ-SAIRAGPPPPPPPP 792
                    D   + P   A   +  + ++    P PP+P      +   A PPPPP P 
Sbjct: 711 AGQA-----DDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPA 765

Query: 793 LYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPP 828
             +  +A+   S P    +        ++  +    
Sbjct: 766 PAAAPAAAPPPSPP----SEEEEMAEDDAPSMDDED 797

Length = 824

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 67.4 bits (164), Expect = 4e-11
 Identities = 54/219 (24%), Positives = 76/219 (34%), Gaps = 25/219 (11%)

Query: 594 QIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTP---PPPPAPRPSIASSASKVPSPPPP 650
            I   P  P P L +        L+  S  P  P   PPPPA +P  +      PS  PP
Sbjct: 345 HIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPP 404

Query: 651 PQ--LPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAP 708
           P   +P      S PA  P   +S+S          +     P  S    +  TS     
Sbjct: 405 PLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPA 464

Query: 709 LPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPP 768
           +  P +  ++ P  PP                      S+ S P  +   S+       P
Sbjct: 465 IGPPPSLPTSTPAAPPRA--------------------SSGSQPPGSALPSSGGCAGPGP 504

Query: 769 PPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPT 807
           P P   +KE+    A  P  PPPP  S S   + V++P+
Sbjct: 505 PLPPIQIKEEPLDEAEEPESPPPPPRSPSPEPTVVNTPS 543

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 65.8 bits (161), Expect = 1e-10
 Identities = 33/209 (15%), Positives = 48/209 (22%), Gaps = 19/209 (9%)

Query: 623 SPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKP 682
               PP P +  P   ++    P+ P  P  P    +++ PA                  
Sbjct: 596 GGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAP------GVAA 649

Query: 683 SSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNT 742
               P       +S          A     A A     P P  P  P             
Sbjct: 650 PEHHPKHVAVPDAS---DGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ------ 700

Query: 743 DASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASST 802
                 P+P A+            PP   +       A     P PP P      + +  
Sbjct: 701 ----PAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPA 756

Query: 803 VSSPTIPLAPPPPSLSSNSSPVPPPPPIA 831
              P    AP     ++     P      
Sbjct: 757 QPPPPPAPAPAAAPAAAPPPSPPSEEEEM 785

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 64.2 bits (156), Expect = 4e-10
 Identities = 54/235 (22%), Positives = 74/235 (31%), Gaps = 23/235 (9%)

Query: 624  PTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPS 683
            P    P  A  P  A +A       PP    P   S   PA  P     +        P 
Sbjct: 2478 PVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPV-----HPR 2532

Query: 684  SATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTD 743
              T +   E  +S           P   PA    + PPP P P P  P + +     +  
Sbjct: 2533 MLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAP 2592

Query: 744  ASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTV 803
               + P  P          +PP+P PP                P PPPP  S S A++  
Sbjct: 2593 PQSARPRAPVDDRGDPRGPAPPSPLPP------------DTHAPDPPPP--SPSPAANEP 2638

Query: 804  SSPTIPLAPPPPSLSSNSSP--VPPPPPIAKVVSKTGVASPV--PAPPSISPSSG 854
                 P  PPP     + +P  V  P    ++      +SP   P   +  P+ G
Sbjct: 2639 DPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVG 2693

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 61.2 bits (149), Expect = 3e-09
 Identities = 49/225 (21%), Positives = 66/225 (29%), Gaps = 40/225 (17%)

Query: 627 PPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSAT 686
              PPAP  S     +  P+ P  P  P     +   A                  ++  
Sbjct: 597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEA------------SAAPA 644

Query: 687 PLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASF 746
           P  A         +    S      PA A    P  PPP P P  P              
Sbjct: 645 PGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAP-------------- 690

Query: 747 STPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSP 806
           + P+  A         + P P P   PP   Q+   A  PP        G+SA S  +  
Sbjct: 691 AAPAGAAP--------AQPAPAPAATPP-AGQADDPAAQPPQAA----QGASAPSPAADD 737

Query: 807 TIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISP 851
            +PL PP P    + +  P  PP     +     +  P P   S 
Sbjct: 738 PVPL-PPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSE 781

Length = 824

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 61.2 bits (148), Expect = 3e-09
 Identities = 60/261 (22%), Positives = 82/261 (31%), Gaps = 18/261 (6%)

Query: 574 PCHKPLLHDHALSVSAEVTHQIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAP 633
           P     +HD  L        QI    +     LASS     A        P+  P PP  
Sbjct: 553 PASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQLASSAP-SYAQTPWPVPHPSQTPEPPTT 611

Query: 634 RPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATP----LP 689
           +  I  +++    P P   +P        P  F        H   + + +   P    + 
Sbjct: 612 QSHIPETSAPRQWPMPLRPIPMRPLRMQ-PITFNVLVFPTPHQPPQVEITPYKPTWTQIG 670

Query: 690 APETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTP 749
                 S T ++T L      AP T +    PPP  P P  PP   P   +   A+    
Sbjct: 671 HIPYQPSPTGANTML--PIQWAPGTMQ----PPPRAPTPMRPPAAPPGRAQRPAAATGRA 724

Query: 750 SPPASTVT-LSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTI 808
            PPA+        ++ P    PP           A P    PP    G+           
Sbjct: 725 RPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPP----- 779

Query: 809 PLAPPPPSLSSNSSPVPPPPP 829
           P APP P      +P P PPP
Sbjct: 780 PQAPPAPQQRPRGAPTPQPPP 800

Length = 991

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 60.9 bits (147), Expect = 4e-09
 Identities = 49/182 (26%), Positives = 68/182 (37%), Gaps = 8/182 (4%)

Query: 678 DRDKPSSATPLPAPETSSSGTNSSTS---LSTAPLPAPATAKSTFPPPPPPPPPPTPPLK 734
           D+D  SS+  +P+P+ + S ++SS     L     P+          P  PPP P+    
Sbjct: 144 DQDNRSSSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAV 203

Query: 735 TPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLY 794
            P  +         P  P+    +S  S  P   P P PPL+ Q+A +  P PP P   +
Sbjct: 204 PPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRH 263

Query: 795 SGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSG 854
             SS           L   P  L   SS   PP P     S+     P+P P    P S 
Sbjct: 264 PQSSHHGPGPPMPHALQQGPVFLQHPSS--NPPQPFGLAQSQ---VPPLPLPSQAQPHSH 318

Query: 855 KG 856
             
Sbjct: 319 TP 320

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 60.4 bits (147), Expect = 5e-09
 Identities = 40/203 (19%), Positives = 57/203 (28%), Gaps = 2/203 (0%)

Query: 591 VTHQIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPP 650
              Q+ A    P P  A      A            P  P AP    A + +   + P  
Sbjct: 580 GDWQVEAVVG-PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAE 638

Query: 651 PQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSAT-PLPAPETSSSGTNSSTSLSTAPL 709
               P    ++   H  H     +       P+ A    PA    +    +  + + A  
Sbjct: 639 ASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAP 698

Query: 710 PAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPP 769
             PA A +  PP      P   P +          +   P P           +     P
Sbjct: 699 AQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQP 758

Query: 770 PPKPPLKEQSAIRAGPPPPPPPP 792
           PP P     +A  A PPP PP  
Sbjct: 759 PPPPAPAPAAAPAAAPPPSPPSE 781

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 58.9 bits (143), Expect = 5e-09
 Identities = 37/135 (27%), Positives = 47/135 (34%), Gaps = 15/135 (11%)

Query: 721 PPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSA 780
            P P PP         V   N+D SF  P   A   + S +  P + P  P  P   +  
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSF--PGEDADPASASPSDPPSSSPGVPSFPSPPEDP 204

Query: 781 IRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPP--PPIAKVVSKTG 838
                   PP P           SS      PP P   +N SP P P  PP   V     
Sbjct: 205 SSPSDSSLPPAP-----------SSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPP 253

Query: 839 VASPVPAPPSISPSS 853
           +++  P PPS S + 
Sbjct: 254 LSTAKPTPPSASATP 268

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 60.1 bits (146), Expect = 5e-09
 Identities = 28/149 (18%), Positives = 44/149 (29%), Gaps = 24/149 (16%)

Query: 705 STAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSP 764
           + A   APA  K+   P    P                       + PA     +  +S 
Sbjct: 368 AAAEAAAPAEKKTPARPEAAAPAAAPVA--------------QAAAAPAPAAAPAAAASA 413

Query: 765 PTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPV 824
           P  PP   PP    +   A P   P        +A +   +P    AP   ++    +P 
Sbjct: 414 PAAPPAAAPPAPVAAPAAAAPAAAPAA----APAAVALAPAPPAQAAPETVAIPVRVAPE 469

Query: 825 PPPPPIAKVVSKTGVASPVPAPPSISPSS 853
           P     A         +  PA   ++P+ 
Sbjct: 470 PAVASAA------PAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 60.2 bits (146), Expect = 6e-09
 Identities = 52/274 (18%), Positives = 74/274 (27%), Gaps = 60/274 (21%)

Query: 587 VSAEVTHQIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPS 646
           V A V   +PA  A     + +S                T     A  P  A++A+   +
Sbjct: 372 VPARVAGAVPAPGARAAAAVGASAVPAVT--------AVTGAAGAALAPKAAAAAAATRA 423

Query: 647 PPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLST 706
             PP    P                        D+   A    AP  + +   +S     
Sbjct: 424 EAPPAAPAP--------------------PATADRGDDAADGDAPVPAKANARASADSRC 463

Query: 707 APLPA-PATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPP 765
               A P     +   P    PP       P       A  +              +S  
Sbjct: 464 DERDAQPPADSGSASAPASDAPPDAAFEPAP----RAAAPSAATPAAVPDARAPAAASRE 519

Query: 766 TPPPPPKPPLKEQSAIRAGPPPPPP--PPLYSGSSASS---------TVSS--PTIPLAP 812
             P    PP     A  A PP P    P   +G +A++          VSS       A 
Sbjct: 520 DAPAAAAPP-----APEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAA 574

Query: 813 PPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAP 846
             P+ +  ++P P  P          VA  VP P
Sbjct: 575 AKPAAAPAAAPKPAAPR---------VAVQVPTP 599

Length = 830

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 58.8 bits (142), Expect = 7e-09
 Identities = 59/296 (19%), Positives = 88/296 (29%), Gaps = 29/296 (9%)

Query: 570 ASLAPCHKPLLHDHALSVSAEVTHQIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPP 629
           + L   H+      A S   + T Q PA   +    LA +   +       + +P +P P
Sbjct: 25  SKLQLSHEEAQSSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQP 84

Query: 630 PPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLP 689
                 S A  + + PS  PP Q+       +      +   S+       +P +  P P
Sbjct: 85  DQQQ-QSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQP 143

Query: 690 APETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTP 749
            P+                   P   +    PPP     P      P      ++ +   
Sbjct: 144 PPQVPQQQQYQ---------SPPQQPQYQQNPPPQAQSAPQVSGLYP-----EESPYQPQ 189

Query: 750 SPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIP 809
           S P +    S  S    PP    PP +     +   PP P P +Y G         P+  
Sbjct: 190 SYPPNEPLPS--SMAMQPPYSGAPPSQ-----QFYGPPQPSPYMYGGPGGRPNSGFPSGQ 242

Query: 810 LAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSR 865
              PPPS          PPP     SK    S     P  S  S         ++ 
Sbjct: 243 Q--PPPSQGQEGYGYSGPPP-----SKGNHGSVASYAPQGSSQSYSTAYPSLPAAT 291

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 58.2 bits (141), Expect = 9e-09
 Identities = 33/141 (23%), Positives = 50/141 (35%), Gaps = 12/141 (8%)

Query: 686 TPLPAPETSSSGTNSSTSLSTAPLPA---PATAKSTFPPPPPPPPPPTPPLKTPVFNRNT 742
            P P P       ++  + + +        A   S  P  PP   P  P   +P  + ++
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 743 DASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASST 802
            +  S P  P+S  + +   SP +P  P  PP         GP  PPPPP+      S+ 
Sbjct: 207 PSDSSLPPAPSSFQSDTPPPSPESPTNPSPPP---------GPAAPPPPPVQQVPPLSTA 257

Query: 803 VSSPTIPLAPPPPSLSSNSSP 823
             +P    A P P        
Sbjct: 258 KPTPPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 59.2 bits (143), Expect = 1e-08
 Identities = 55/268 (20%), Positives = 77/268 (28%), Gaps = 41/268 (15%)

Query: 592  THQIPASPAIPDPNLASSCKHEAAGLKSDSFS-----------PTTPPPPPA---PRPSI 637
            T   P +P  P      S     +                   P  P  PP     RP++
Sbjct: 2832 TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAV 2891

Query: 638  ASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSG 697
            + S      PP  P+ PP   +   P   P              P    P  AP T  +G
Sbjct: 2892 SRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAG 2951

Query: 698  TNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTP--SPPAST 755
                +     P    A        P    P P P  + P  +       S    S  AS+
Sbjct: 2952 AGEPSGAVPQPWLG-ALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASS 3010

Query: 756  VTLSTTSSPP------TPPPP-------------PKPPLKEQSAIRAGPPPPPPPPLY-- 794
            + L   + PP      T  PP                   +  A+   PP P  P  +  
Sbjct: 3011 LALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEP 3070

Query: 795  -SGSSASSTVSSPTIPLAPPPPSLSSNS 821
               +  +    SP+    PPP  LS+N+
Sbjct: 3071 DPATPEAGARESPSSQFGPPP--LSANA 3096

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 59.2 bits (143), Expect = 1e-08
 Identities = 56/268 (20%), Positives = 73/268 (27%), Gaps = 46/268 (17%)

Query: 617 LKSDSFSPTTPP--------PPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPH 668
           L+ D  +P  PP         P   R +         + P     PP     +  A  P 
Sbjct: 248 LRGDIAAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPL 307

Query: 669 TKESKSHMQDRDKPSSA-------------TPLPAPETSSSGTNSSTSLSTAPLPAPATA 715
              +            A             +PLP P              T   P+    
Sbjct: 308 ALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLED 367

Query: 716 KSTFPPPPPPPPPPT------PPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPP 769
            S     P     PT          TP          + P+ P         +S PTP P
Sbjct: 368 LSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAP-------VPASVPTPAP 420

Query: 770 PPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPP 829
            P P         A  PPPP  PL S    S     P  P    PP+ ++  +P  P   
Sbjct: 421 TPVP---------ASAPPPPATPLPSAEPGSD--DGPAPPPERQPPAPATEPAPDDPDDA 469

Query: 830 IAKVVSKTGVASPVPAPPSISPSSGKGR 857
             K +       P P PP    +   GR
Sbjct: 470 TRKALDALRERRP-PEPPGADLAELLGR 496

Length = 3151

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 45/167 (26%), Positives = 55/167 (32%), Gaps = 49/167 (29%)

Query: 700 SSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLS 759
           +  S     LPA A A    PPPPP      P                 P+ P       
Sbjct: 24  AGASAVAIALPATANADPAPPPPPPSTAAAAPA----------------PAAPPPP---- 63

Query: 760 TTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSS 819
               PP  PP P+P            P   PPP             P  P APPPP +  
Sbjct: 64  ---PPPAAPPAPQP----------DDPNAAPPP------------PPADPNAPPPPPVDP 98

Query: 820 NSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSS----GKGRLSRTI 862
           N+ P P P P     +  G +  VPA    S ++    G   LS+T 
Sbjct: 99  NAPPPPAPEPGRIDNAVGGFSYVVPAGWVESDATHLDYGSALLSKTT 145

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 58.5 bits (141), Expect = 2e-08
 Identities = 68/291 (23%), Positives = 89/291 (30%), Gaps = 46/291 (15%)

Query: 595 IPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPP--PQ 652
           I A PA      +      A  L         P P P  +P  AS  S  P  P    PQ
Sbjct: 210 IAAQPAPQPQQPSPLSLISAPSLHP----QRLPSPHPPLQPQTASQQSPQPPAPSSRHPQ 265

Query: 653 LPPH-------HFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLS 705
              H       H     P    H   +          S   PLP P  +   +++  S  
Sbjct: 266 SSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGL-AQSQVPPLPLPSQAQPHSHTPPS-Q 323

Query: 706 TAPLPAPATAKSTFPPPP------PPPPPPTPPLKTPVFNRNTDASFSTP--------SP 751
           +A  P     +   PP P      PPP  P P L              +P         P
Sbjct: 324 SALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPP 383

Query: 752 PASTVTLSTTSS--PPTPPPPPKPPLKEQSAIRAGPPPPPP-------PPLYSGSSASST 802
           P +   LS+  +  PP+  PPP   + +   +++ P  PP        PP  S    S  
Sbjct: 384 PPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGL 443

Query: 803 VSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSS 853
            S P        P  S     + PPP +          S   APP  S  S
Sbjct: 444 HSGPPQSPFAQHPFTSGGLPAIGPPPSLP--------TSTPAAPPRASSGS 486

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 58.7 bits (142), Expect = 2e-08
 Identities = 25/168 (14%), Positives = 43/168 (25%), Gaps = 1/168 (0%)

Query: 682 PSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPP-PPPPPPTPPLKTPVFNR 740
            + A P P    +++   S+    TA   A   A +              PP        
Sbjct: 376 VAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPAT 435

Query: 741 NTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSAS 800
                 +           +  +S  +            S   + P    PP      +  
Sbjct: 436 ADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPR 495

Query: 801 STVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPS 848
           +   S   P A P     + +S    P   A    +    +P  A P+
Sbjct: 496 AAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPA 543

Length = 830

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.6 bits (139), Expect = 3e-08
 Identities = 34/198 (17%), Positives = 55/198 (27%), Gaps = 18/198 (9%)

Query: 624 PTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPS 683
           P    P PA  P+  ++A    +        P   S + P      +++ +         
Sbjct: 392 PAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPA-PEALAAARQASARGPGGAPAP 450

Query: 684 SATPLPAP------ETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPP-------PPPPT 730
           +  P  AP        +     ++ + +     APA A +     PPP          P 
Sbjct: 451 APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPA 510

Query: 731 PPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPP 790
           P             S   P+         T +  P   P P+      +A      P PP
Sbjct: 511 PAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAA----AATEPVVAPRPP 566

Query: 791 PPLYSGSSASSTVSSPTI 808
               SG         P +
Sbjct: 567 RASASGLPDMFDGDWPAL 584

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 57.6 bits (139), Expect = 4e-08
 Identities = 45/195 (23%), Positives = 55/195 (28%), Gaps = 31/195 (15%)

Query: 707  APLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTL----STTS 762
            A   AP         PP P  PP P    P      D     P  P     +       S
Sbjct: 2491 AAGAAPDPGGG---GPPDPDAPPAPSRLAPAI--LPDEPVGEPVHPRMLTWIRGLEELAS 2545

Query: 763  SPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIP------------- 809
                 PPPP PP    +A     PPP P P  S  + +S    P  P             
Sbjct: 2546 DDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDR 2605

Query: 810  ---LAPPPPSLSSNSSPVPPPPPIA------KVVSKTGVASPVPAPPSISPSSGKGRLSR 860
                 P PPS     +  P PPP +      +         P P  P   P+ G+    R
Sbjct: 2606 GDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPR 2665

Query: 861  TISSRSHQTKKLKPL 875
                     +   P 
Sbjct: 2666 RARRLGRAAQASSPP 2680

Length = 3151

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 57.5 bits (138), Expect = 4e-08
 Identities = 55/247 (22%), Positives = 84/247 (34%), Gaps = 16/247 (6%)

Query: 618 KSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQ 677
           KS  F  T     P    ++ ++ S +P     P +     +S  P     T  + S + 
Sbjct: 430 KSVIFVYTLVHVEPHKTTAVPTTPS-LPPASTGPTVSTADPTSGTP-----TGTTSSTLP 483

Query: 678 DRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPP-----PPPPPTPP 732
           +   P+S T    P  +S     +T  +T+P     +       P P          +PP
Sbjct: 484 EDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPP 543

Query: 733 LKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPP 792
             T      T    +  SP  +T T   TS+P               +      P  P  
Sbjct: 544 TGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSS 603

Query: 793 LYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPS 852
            +S   ++ST ++P   L    P+   N +   P  P    VS     SP P P + S  
Sbjct: 604 SHSTPRSNSTSTTP--LLTSAHPTGGENITEETPSVPSTTHVS---TLSPGPGPGTTSQV 658

Query: 853 SGKGRLS 859
           SG G  S
Sbjct: 659 SGPGNSS 665

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.1 bits (138), Expect = 4e-08
 Identities = 21/100 (21%), Positives = 27/100 (27%), Gaps = 1/100 (1%)

Query: 702 TSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTT 761
             L   P P PA   +  P P  P P P+   K               +     V     
Sbjct: 358 ALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPV 417

Query: 762 SSPPTPPPPPKPPL-KEQSAIRAGPPPPPPPPLYSGSSAS 800
           + P    P   P L +    +   P   PP P      A 
Sbjct: 418 APPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKAL 457

Length = 585

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 57.0 bits (137), Expect = 6e-08
 Identities = 74/334 (22%), Positives = 103/334 (30%), Gaps = 28/334 (8%)

Query: 541 QKTSKSSQTTSLSCNSVQVSSLSVSGHHDASLAPCHKPLLHDHALSVSAEVTHQIPASPA 600
           Q +  ++Q          +S +S    H   L   H PL    A   S +        P 
Sbjct: 206 QGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQ 265

Query: 601 IPDPNLASSCKHEAAGLKSDSFSPTTPPP----------PPAPRPSIASSASKVPSPPPP 650
                      H           P++ PP          PP P PS A   S  P     
Sbjct: 266 SSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSA 325

Query: 651 --PQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAP 708
             PQ PP           PH K   +    +    S    P  +  S      ++L   P
Sbjct: 326 LQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPP 385

Query: 709 LPAPATAKSTFPPPPPPPPP----------PTPPLKTPVFNRNTDASFSTPSPPASTVTL 758
              P ++  T  PP   PPP           + P + PV  ++      +  P AST   
Sbjct: 386 ALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQS-----QSLPPKASTHPH 440

Query: 759 STTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLS 818
           S   S P   P  + P         GPPP  P    +    +S+ S P     P     +
Sbjct: 441 SGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCA 500

Query: 819 SNSSPVPPPPPIAKVVSKTGVA-SPVPAPPSISP 851
               P+PP     + + +     SP P P S SP
Sbjct: 501 GPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSP 534

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional

 Score = 57.0 bits (137), Expect = 6e-08
 Identities = 59/268 (22%), Positives = 80/268 (29%), Gaps = 26/268 (9%)

Query: 619 SDSFSPTTPPPPPAPRPSIASSASKVPS--PPPPPQLPPHHFSSSCPAHFPHTKESKSHM 676
           S+    T  PP   PRP +  S     S      P+ PP H     P H  H+       
Sbjct: 409 SEPTYGTPRPPVEKPRPEVPQSLETATSHGSAQVPEPPPVHDLEPGPLHDQHSMAPCPVA 468

Query: 677 QDRDKP--------------SSATPLPAPETSSSG---TNSSTSLSTAPLPAPATAKSTF 719
           Q    P                  P  AP  + +G        SLS  P  A A      
Sbjct: 469 QLPPGPLQDLEPGDQLPGVVQDGRPACAPVPAPAGPIVRPWEASLSQVPGVAFAPVMPQ- 527

Query: 720 PPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPT-PPPPPKPPLKEQ 778
           P P  P P PT  L+ PV       +   P   +  V +     P    P PP+ P   Q
Sbjct: 528 PMPVEPVPVPTVALERPVCPAPPLIAMQGPGETSGIVRVRERWRPAPWTPNPPRSPS--Q 585

Query: 779 SAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTG 838
            ++R                AS  V  P +    P   +     P     P +   S+  
Sbjct: 586 MSVRDRLARLRAEA--QPYQASVEVQPPQLTQVSPQQPMEYPLEPEQQMFPGSP-FSQVA 642

Query: 839 VASPVPAPPSISPSSGKGRLSRTISSRS 866
                   P++ P      L + IS  +
Sbjct: 643 DVMRAGGVPAMQPQYFDLPLQQPISQGA 670

Length = 935

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 56.1 bits (135), Expect = 9e-08
 Identities = 55/248 (22%), Positives = 72/248 (29%), Gaps = 38/248 (15%)

Query: 624 PTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSH-------M 676
           P+   PP          A+  P P P   + P   S       P  K             
Sbjct: 324 PSQRVPPKES------DAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAY 377

Query: 677 QDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTP 736
           +D   P+S  P P     SS   SS S+     PA          P P      P ++  
Sbjct: 378 EDLKPPTSPIPTP----PSSSPASSKSVDAVAKPAEPD-----VVPSPGSASNVPEVEPA 428

Query: 737 VFNRNTDASFS------------TPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAG 784
                     S            +PSP A T    + SS  + P  P       +   A 
Sbjct: 429 QVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAA 488

Query: 785 PPPPPPPPL----YSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVA 840
           PPP    PL            T  SP  P+    PS ++    V    P   +  +   A
Sbjct: 489 PPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHA 548

Query: 841 SPVPAPPS 848
            P P P S
Sbjct: 549 QPKPRPLS 556

Length = 576

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.0 bits (135), Expect = 1e-07
 Identities = 34/201 (16%), Positives = 49/201 (24%), Gaps = 20/201 (9%)

Query: 685 ATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPV------- 737
           A P  A     +    + +   A  PAPA   +     P            P        
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431

Query: 738 ---------FNRNTDASFSTPSP---PASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGP 785
                          A    P+P   PA+    +     P        P +   A    P
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAP 491

Query: 786 PPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTG-VASPVP 844
               PPP        ++ +      AP      S   P    P  A         A+P P
Sbjct: 492 ADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAP 551

Query: 845 APPSISPSSGKGRLSRTISSR 865
              + +      R  R  +S 
Sbjct: 552 RAAAATEPVVAPRPPRASASG 572

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.8 bits (135), Expect = 1e-07
 Identities = 27/144 (18%), Positives = 39/144 (27%), Gaps = 24/144 (16%)

Query: 710 PAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPP 769
            A          P      P                 +     A+    +  +    P P
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAA---------------APAPAAAAPAAAAAPAPAAAPQP 431

Query: 770 PPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPP 829
            P P         AG  P    P    ++A S   +P  P A P P+ +   +P   P P
Sbjct: 432 APAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPA-PAAAPEPTAAPAPAPPAAPAP 490

Query: 830 IAKVVSKTGVASPVPAPPSISPSS 853
            A        A   PA P+    +
Sbjct: 491 AA--------APAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 56.2 bits (135), Expect = 1e-07
 Identities = 52/237 (21%), Positives = 84/237 (35%), Gaps = 14/237 (5%)

Query: 621 SFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRD 680
           S SP+ P P      S +S+  ++  P  PP +     ++  P+  P T  +++      
Sbjct: 149 SSSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGS 208

Query: 681 KPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNR 740
             ++       + S     S+ SL    LP+P             P PP P       +R
Sbjct: 209 PIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPS------SR 262

Query: 741 NTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSAS 800
           +  +S   P PP   +  +    P     P   P +     ++  PP P P      S +
Sbjct: 263 HPQSSHHGPGPP---MPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHT 319

Query: 801 STVSSPTIPLAPP-----PPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPS 852
               S   P  PP     PP+ S      PP  PI ++ +++    P    PS  P 
Sbjct: 320 PPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQ 376

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 55.6 bits (134), Expect = 2e-07
 Identities = 36/189 (19%), Positives = 53/189 (28%), Gaps = 14/189 (7%)

Query: 627 PPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSAT 686
               P+ RP  ASS+S      P P         +  +    +  S S        SS++
Sbjct: 274 GWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSS 333

Query: 687 PLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASF 746
                   S G       S +  P+P+      P  P  P     P + P     +    
Sbjct: 334 ESSRGAAVSPGP------SPSRSPSPSRPPP--PADPSSPRKRPRPSRAPSSPAASAGRP 385

Query: 747 STPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSP 806
           +     A+    +         P  +P      A  A        PL + S        P
Sbjct: 386 TRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPS------GEP 439

Query: 807 TIPLAPPPP 815
                PPPP
Sbjct: 440 WPGSPPPPP 448

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.7 bits (132), Expect = 2e-07
 Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 20/149 (13%)

Query: 681 KPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNR 740
           KP++A    AP    +             PA   A +    P         P   P    
Sbjct: 365 KPAAAAEAAAPAEKKT-------------PARPEAAAPAAAPVAQAAAAPAPAAAPA--- 408

Query: 741 NTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSAS 800
              A+ S P+ P +    +  ++P    P   P     +A+   P PP      + +   
Sbjct: 409 ---AAASAPAAPPAAAPPAPVAAPAAAAPAAAPA-AAPAAVALAPAPPAQAAPETVAIPV 464

Query: 801 STVSSPTIPLAPPPPSLSSNSSPVPPPPP 829
                P +  A P P+ +  ++ + P   
Sbjct: 465 RVAPEPAVASAAPAPAAAPAAARLTPTEE 493

Length = 618

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.2 bits (133), Expect = 2e-07
 Identities = 42/258 (16%), Positives = 79/258 (30%), Gaps = 16/258 (6%)

Query: 584 ALSVSAEVTHQIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASK 643
           A+            + A+P     +     A   K+ + +  T    P   P+  ++A +
Sbjct: 379 AVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR 438

Query: 644 VPSP---PPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPA---PETSSSG 697
                    P     +  +S+         +  +       P+S  P  A   P   ++ 
Sbjct: 439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAA 498

Query: 698 TNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVT 757
            +++T  +     APA A     P    PP P     TP       A+ +  +  A  V 
Sbjct: 499 PSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAA--PAARAGGAAAALDVL 556

Query: 758 ----LSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPP 813
               +  +S           P    +A      P     + +  + ++T  +P    A  
Sbjct: 557 RNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARA 616

Query: 814 PPSLSSNSSPVP----PP 827
             +  S  +P P    PP
Sbjct: 617 EQAAESRGAPPPWEDIPP 634

Length = 830

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 36/135 (26%), Positives = 42/135 (31%), Gaps = 35/135 (25%)

Query: 702 TSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTT 761
           TS    PL          P P P P  PT    +PV           P+P          
Sbjct: 344 TSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPV----------RPTP--------AP 385

Query: 762 SSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNS 821
           S+ P        P KE     A PPP PP P          V+ P        P L+  +
Sbjct: 386 STRPKAAAAANIPPKEPVRETATPPPVPPRP----------VAPPVPHTPESAPKLTRAA 435

Query: 822 SPV-------PPPPP 829
            PV       PP PP
Sbjct: 436 IPVDEKPKYTPPAPP 450

Length = 585

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 55.5 bits (134), Expect = 2e-07
 Identities = 45/228 (19%), Positives = 56/228 (24%), Gaps = 25/228 (10%)

Query: 627 PPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSAT 686
             P   P PS+  +A K P P PP                P  K     +   +  +   
Sbjct: 115 YIPDLQPDPSLWGTAPK-PEPQPPQAPESQP-----QPQTPAQKM----LSLEEVEAQLQ 164

Query: 687 PLPAPETSSSGTNSSTSLSTAPLPA--PATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDA 744
                                P  A  P       PP  P PP   P    P        
Sbjct: 165 QRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQP-------- 216

Query: 745 SFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQS-AIRAGPPPPPPPPLYSGSSASSTV 803
                  PA +   +    PP  P  P P  + Q   +    PPPPP P           
Sbjct: 217 ---QQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQ 273

Query: 804 SSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISP 851
           + P  P   P P          P PP  +      V  P         
Sbjct: 274 AQPP-PQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQF 320

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.5 bits (131), Expect = 3e-07
 Identities = 31/157 (19%), Positives = 49/157 (31%), Gaps = 26/157 (16%)

Query: 695 SSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPAS 754
           S G     + + AP+  PA A +   P    P P  PP                P+  A+
Sbjct: 368 SGGGAGPATAAAAPVAQPAPAAA--APAAAAPAPAAPPAAPAA----------APAAAAA 415

Query: 755 TVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPP 814
              ++   +  +P P      ++ SA   G  P P P         +  ++P     P  
Sbjct: 416 ARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAP---------APAAAPAAAARPAA 466

Query: 815 PSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISP 851
                 ++     P  A        A+P PA     P
Sbjct: 467 AGPRPVAAAAAAAPARAA-----PAAAPAPADDDPPP 498

Length = 700

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.4 bits (131), Expect = 3e-07
 Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 12/106 (11%)

Query: 685 ATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDA 744
           A  +P P    +   ++      P PAP+T          PP  P     TP        
Sbjct: 358 ALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATP-------- 409

Query: 745 SFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPP 790
               P  P   V      +P + P   +  +      +  PP PP 
Sbjct: 410 ----PPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.5 bits (129), Expect = 7e-07
 Identities = 32/174 (18%), Positives = 51/174 (29%), Gaps = 7/174 (4%)

Query: 681 KPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNR 740
             +     PAP +S     ++   + A   APA          P      P         
Sbjct: 593 GAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEH 652

Query: 741 N------TDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLY 794
           +       DAS      PA     +  + PP P P         +  +  P P   PP  
Sbjct: 653 HPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAG 712

Query: 795 SGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPS 848
                ++         + P P+ + +  P+PP P      +      P P  P+
Sbjct: 713 QADDPAAQPPQAAQGASAPSPA-ADDPVPLPPEPDDPPDPAGAPAQPPPPPAPA 765

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.1 bits (128), Expect = 9e-07
 Identities = 30/162 (18%), Positives = 38/162 (23%), Gaps = 9/162 (5%)

Query: 686 TPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDAS 745
            P  A         SS     A  PA   A +    P P      P   +        A 
Sbjct: 591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAP 650

Query: 746 FSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSS 805
              P   A           P       P     +   A P  P        + A +    
Sbjct: 651 EHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA---- 706

Query: 806 PTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPP 847
                A PP   + + +  PP               PVP PP
Sbjct: 707 -----ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPP 743

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.7 bits (127), Expect = 1e-06
 Identities = 40/183 (21%), Positives = 54/183 (29%), Gaps = 9/183 (4%)

Query: 682 PSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRN 741
           P +A     P  +SSG     +   AP  APA   +  P      P        P     
Sbjct: 592 PGAAGGEGPPAPASSGPPEEAARPAAP-AAPAAPAAPAPAGAAAAPAEASAAPAPGVAAP 650

Query: 742 TDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASS 801
                    P AS        +      P  PP     A  A P    P       +A+ 
Sbjct: 651 EHHPKHVAVPDASD-GGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATP 709

Query: 802 TVSSPTIPLAPPPPSLSSNSSP-------VPPPPPIAKVVSKTGVASPVPAPPSISPSSG 854
                  P A PP +    S+P       VP PP         G  +  P PP+ +P++ 
Sbjct: 710 PAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAA 769

Query: 855 KGR 857
              
Sbjct: 770 PAA 772

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.3 bits (126), Expect = 1e-06
 Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 12/122 (9%)

Query: 682 PSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRN 741
            ++    PAP  ++    ++ + + AP PAPA A    P P PP P    P         
Sbjct: 403 AAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPA----PAPAPPSPAGNAPAGGAPSPPP 458

Query: 742 TDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASS 801
             A  + P+P  +     T +  P PP  P P         A P  P  P   +G+  ++
Sbjct: 459 AAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPA--------AAPAAPAAPAAPAGADDAA 510

Query: 802 TV 803
           T+
Sbjct: 511 TL 512

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.9 bits (125), Expect = 2e-06
 Identities = 21/165 (12%), Positives = 35/165 (21%), Gaps = 23/165 (13%)

Query: 693 TSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPP 752
              +          +  P    A+   P  P  P  P P                  + P
Sbjct: 591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPA--------------GAAAAP 636

Query: 753 ASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAP 812
           A                P    + + S    G P        +    +   ++P  P   
Sbjct: 637 AEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGA 696

Query: 813 PPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGR 857
            P   +   +  PP               P   PP  +  +    
Sbjct: 697 APAQPAPAPAATPPAGQ---------ADDPAAQPPQAAQGASAPS 732

Length = 824

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.2 bits (125), Expect = 2e-06
 Identities = 45/262 (17%), Positives = 67/262 (25%), Gaps = 27/262 (10%)

Query: 586 SVSAEVTHQIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVP 645
                     P          A S   E            + P   AP  +    A    
Sbjct: 438 RGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAP--R 495

Query: 646 SPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSS--------- 696
           +  P    P     +  PA     +E          P +  P PA    ++         
Sbjct: 496 AAAPSAATPAAVPDARAPAAAS--REDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAAL 553

Query: 697 ------GTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPS 750
                 G   S+        A   A +    P P  P     + TP     T  +    +
Sbjct: 554 DVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGA 613

Query: 751 PPASTVTLSTTSSPPTPPPPPKP--PLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTI 808
             A     S  + PP    PP    PL        G P     P++        V+    
Sbjct: 614 ARAEQAAESRGAPPPWEDIPPDDYVPLSADEGF--GGPDDGFVPVFDSGPDDVRVA---- 667

Query: 809 PLAPPPPSLSSNSSPVPPPPPI 830
           P     P+   ++ P+PP  P+
Sbjct: 668 PKPADAPAPPVDTRPLPPAIPL 689

Length = 830

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 51.3 bits (123), Expect = 3e-06
 Identities = 41/205 (20%), Positives = 49/205 (23%), Gaps = 31/205 (15%)

Query: 627 PPPPPAPRPSIASSASKVPS-----------------PPPPPQLPPHHFSSSCPAHFPHT 669
           PP  P  +P   + A K+ S                 P PP Q+ P        A     
Sbjct: 136 PPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQG 195

Query: 670 KESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPP 729
              +               P P               AP  APA      PP  P  PPP
Sbjct: 196 PPEQPPGY-----------PQPPQGHPEQVQPQQFLPAPSQAPAQP--PLPPQLPQQPPP 242

Query: 730 TPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPP 789
               + P  ++        P              PP   P P P L  Q      PPP  
Sbjct: 243 LQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLP-QGQNAPLPPPQQ 301

Query: 790 PPPLYSGSSASSTVSSPTIPLAPPP 814
           P  L            P        
Sbjct: 302 PQLLPLVQQPQGQQRGPQFREQLVQ 326

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 51.2 bits (122), Expect = 3e-06
 Identities = 47/219 (21%), Positives = 65/219 (29%), Gaps = 25/219 (11%)

Query: 591 VTHQIPASPAIPDPNLASSCKHEAAGLKSDSF-SPTTPPPPPAPRPSIASSASKVPSPPP 649
            + Q P  P    P L        +  + +S  SP  PPPP  P         K+   P 
Sbjct: 601 RSAQRPTRP--KSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPK 658

Query: 650 PPQLPPHHFSSSCPAHF--------PHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSS 701
           PP+ P   F       F          +KE+K+ +   +   S      PET  +   + 
Sbjct: 659 PPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTP 718

Query: 702 TSLSTAPLPAPATAKSTFPPPPPPPPP-------PTPPLKTPVFNRNTDASFSTPSPPAS 754
             L   P   P   +  F P   P           TPP +   F   T A    P   A 
Sbjct: 719 RPL---PPKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPDILAE 775

Query: 755 TV----TLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPP 789
                   + T  P      P  P + +       P  P
Sbjct: 776 EFKEEDIHAETGEPDEAMKRPDSPSEHEDKPPGDHPSLP 814

Length = 943

>gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein

 Score = 50.1 bits (120), Expect = 5e-06
 Identities = 49/226 (21%), Positives = 72/226 (31%), Gaps = 19/226 (8%)

Query: 598 SPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSI-----ASSASKVPSPPPPPQ 652
           SP  P     S  +           SP +P P P+ R  +        AS+   PPP   
Sbjct: 244 SPLHPHTTRPSPPRPA---FSRSPSSPLSPLPRPSTRRGLLPNPRLPRASRGHLPPPTSS 300

Query: 653 LPPH-HFSSSCPAHFPHTKESKSHMQDRD-KPSSATPLPAPETSSSGTNSSTSLSTAPLP 710
            PP  +     P H   ++ +  +++ R  + +S     A    S     S +L ++ LP
Sbjct: 301 APPRPNGGLRRPLHLHSSRPNSPNLRPRRIRKNSLQQTRARLGHSKSLGQSPNLRSSQLP 360

Query: 711 APATAKSTFP-PPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPP 769
            P   K      P PPP     PL           S   P PP++  +    SS      
Sbjct: 361 PPT--KRRLRLLPVPPPKVQALPLTALAPLVRHSPSIPLPHPPSALPSHVGASSSKHHRL 418

Query: 770 PPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPP 815
           PP      +         P P P        +     + P   PP 
Sbjct: 419 PPSVLPGPR------LSSPSPSPSLPTRRPGTPPPPASPPTPSPPS 458

Tymoviruses are single stranded RNA viruses. This family includes a protein of unknown function that has been named based on its molecular weight. Tymoviruses such as the ononis yellow mosaic tymovirus encode only three proteins. Of these two are overlapping this protein overlaps a larger ORF that is thought to be the polymerase. Length = 458

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 49.9 bits (119), Expect = 6e-06
 Identities = 59/235 (25%), Positives = 84/235 (35%), Gaps = 32/235 (13%)

Query: 586 SVSAEVTHQIPASPAIPDPNLASSCKH--EAAGLKSDSFSPTT------PPPPPAPRPSI 637
           S +A+    +P  P  P+       +   +   +     SP T      PP  P P P  
Sbjct: 333 SDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPS 392

Query: 638 ASSASKVP----SPPPPPQLPPHHFS-SSCPAHFPHTKESK--------SHMQDRDKPSS 684
           +S AS       + P  P + P   S S+ P   P   E+K        +  +D   P+S
Sbjct: 393 SSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTS 452

Query: 685 ATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDA 744
            +P   P   S   +S++S+   P  APATA +    PPP    P  P     +    D 
Sbjct: 453 PSPTA-PTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSP-----YAVYDDL 506

Query: 745 SFSTPSPPASTVTLSTTSSPPTPPP-----PPKPPLKEQSAIRAGPPPPPPPPLY 794
              T   PA+ V     SS           PP     EQ   +  P P  P  +Y
Sbjct: 507 KPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSPYTMY 561

Length = 576

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 50.2 bits (120), Expect = 6e-06
 Identities = 40/214 (18%), Positives = 56/214 (26%), Gaps = 40/214 (18%)

Query: 634 RPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPET 693
           R +I    S     PPPP             H   T E +     R  P      P  + 
Sbjct: 83  RIAITVDPSAGEPAPPPP-------------HARRTSEPELPRPGRR-PYEGYGGPRADD 128

Query: 694 SSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPA 753
              G      L TA    PA  +   P   P         +           F   +P A
Sbjct: 129 RPPGLPRQDQLPTARPAYPAYQQRPEPGAWPRAADDYGWQQQR-------LGFPPRAPYA 181

Query: 754 STVTLSTTSSPPTPPP-------PPKPPLKEQSAIRAGPP-------PPPPP----PLYS 795
           S  + +        P          +    +        P       P PPP        
Sbjct: 182 SPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRG 241

Query: 796 GSSASSTVSSPTIPLAPPPPS-LSSNSSPVPPPP 828
           G        +P +P+ P  P  L++  +P P P 
Sbjct: 242 GPGPPERDDAPVVPIRPSAPGPLAAQPAPAPGPG 275

Length = 617

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.4 bits (121), Expect = 7e-06
 Identities = 34/198 (17%), Positives = 50/198 (25%), Gaps = 33/198 (16%)

Query: 596 PASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPP 655
            A               E           +        +   A+ A+  P+P P     P
Sbjct: 634 AAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAP 693

Query: 656 HHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATA 715
              + + PA  P          D   P++  P  A   S+    +   +   P P     
Sbjct: 694 AGAAPAQPAPAPAATPPAGQADD---PAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPD 750

Query: 716 KSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPL 775
            +  P  PPPPP P P                               + P   PPP PP 
Sbjct: 751 PAGAPAQPPPPPAPAPA------------------------------AAPAAAPPPSPPS 780

Query: 776 KEQSAIRAGPPPPPPPPL 793
           +E+       P       
Sbjct: 781 EEEEMAEDDAPSMDDEDR 798

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.1 bits (120), Expect = 7e-06
 Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 12/110 (10%)

Query: 627 PPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSAT 686
                AP P+ A +A+      PP   PP   ++   A       +         P++  
Sbjct: 395 AQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAA--------APAAVA 446

Query: 687 PLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTP 736
             PAP   ++    +  +  AP PA A+A     P P   P       T 
Sbjct: 447 LAPAPPAQAAPETVAIPVRVAPEPAVASA----APAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.8 bits (119), Expect = 7e-06
 Identities = 24/106 (22%), Positives = 32/106 (30%), Gaps = 16/106 (15%)

Query: 687 PLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPP-------PPPPPPPTPPLKTPVFN 739
           P P P   ++   S    + AP   P  A +   PP         PPP P  P+  PV  
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV-- 421

Query: 740 RNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGP 785
                        A  +T +       P   P  P KE+       
Sbjct: 422 -------PHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIAD 460

Length = 585

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 49.7 bits (118), Expect = 9e-06
 Identities = 63/266 (23%), Positives = 87/266 (32%), Gaps = 48/266 (18%)

Query: 594 QIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQL 653
           QI   P  P P  A++       +    ++P T  PPP             P+P  PP  
Sbjct: 668 QIGHIPYQPSPTGANT-------MLPIQWAPGTMQPPPR-----------APTPMRPPAA 709

Query: 654 PPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPA 713
           PP    +  PA         +    R +P +A P  A   +++          A  PA A
Sbjct: 710 PP--GRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPG-------RARPPAAA 760

Query: 714 TAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPK- 772
             ++  P   P  P P PP                  P A           PTP PPP+ 
Sbjct: 761 PGRARPPAAAPGAPTPQPP------------------PQAPPAPQQRPRGAPTPQPPPQA 802

Query: 773 PPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAK 832
            P   Q   RA P    P         +  V     P    P +L   ++  P P P + 
Sbjct: 803 GPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGR-PSLKKPAALERQAAAGPTPSPGSG 861

Query: 833 VVSKTGVASPVPAPPSISPSSGKGRL 858
              K  V +PV  PP + P     +L
Sbjct: 862 TSDKI-VQAPVFYPPVLQPIQVMRQL 886

Length = 991

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.6 bits (119), Expect = 1e-05
 Identities = 28/151 (18%), Positives = 46/151 (30%), Gaps = 9/151 (5%)

Query: 710 PAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPP 769
           PAP  A    PP P    PP    +          +   P+  A+    ++ +  P    
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649

Query: 770 PPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPP 829
           P   P             P       G  A +  ++P  P   P P+  +  +   P  P
Sbjct: 650 PEHHP--------KHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQP 701

Query: 830 IAKVVSKTGVASPVPAPPSISPSSGKGRLSR 860
                + T  A     P +  P + +G  + 
Sbjct: 702 APA-PAATPPAGQADDPAAQPPQAAQGASAP 731

Length = 824

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 49.4 bits (117), Expect = 1e-05
 Identities = 52/305 (17%), Positives = 86/305 (28%), Gaps = 40/305 (13%)

Query: 586 SVSAEVTHQIPA--SPAIPDPNLAS-SCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSAS 642
           S   E T       S      +         A    +   S T      +P P +    +
Sbjct: 480 STLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNAT--SPTPIVIGVTT 537

Query: 643 KVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSST 702
              SPP      P+  S       P    +   +     PS  T         +G++ ++
Sbjct: 538 TATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTS--APSVLTSAVTTGQHGTGSSPTS 595

Query: 703 SLSTAPLPAPAT----AKSTFPPPPPPPPPPTPPLK--TPVFNRNTDASFSTPSPPASTV 756
                P  + +T    + ST P      P     +   TP     T  S  +P P   T 
Sbjct: 596 QQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTT 655

Query: 757 T------LSTTSSPP--------TPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASST 802
           +       S+TS  P         P P    P        A P         + ++  ++
Sbjct: 656 SQVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETS 715

Query: 803 VSSPTIPLAPPP------PSLSSNSSPVPPPPPIAKVVSKTGVASP-------VPAPPSI 849
            S+     +P         +  + ++ +PP          T  + P       VP PP+ 
Sbjct: 716 GSTLMASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVPVPPTQ 775

Query: 850 SPSSG 854
            P   
Sbjct: 776 HPDHS 780

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 11/105 (10%)

Query: 678 DRDKPSSATPL--PAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKT 735
           DRD+P          P     G  ++ ++      AP+   +T  PP  P  P   P++ 
Sbjct: 49  DRDEPDMMPAATQALPTQPPEG--AAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEP 106

Query: 736 PVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSA 780
           P              P           +PP P P PKP ++E++A
Sbjct: 107 P-------KPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAA 144

Length = 226

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.7 bits (116), Expect = 2e-05
 Identities = 29/173 (16%), Positives = 47/173 (27%), Gaps = 16/173 (9%)

Query: 689 PAPETSSS--GTNSSTSLSTAPLPAPATAKSTF--------PPPPPPPPPPTPPLKTPVF 738
           PA     +  G   +      P P    A +                     P       
Sbjct: 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAA 419

Query: 739 NRNTDASFSTPSPPAS--TVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSG 796
               +A  + P+PPA+      +     P P         +         PP        
Sbjct: 420 ATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADS---GS 476

Query: 797 SSASSTVSSPTIPLAPPPPS-LSSNSSPVPPPPPIAKVVSKTGVASPVPAPPS 848
           +SA ++ + P     P P +   S ++P   P   A   +    A    APP+
Sbjct: 477 ASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPA 529

Length = 830

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 753 ASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAP 812
           AS   L   +   TPPPP        SAI  G PPPPPP     +S     +    P  P
Sbjct: 45  ASIPGLEDVTVQTTPPPPA-------SAITNGGPPPPPPARAEAASPPPPEAPAEPPAEP 97

Query: 813 PPPSLSSNSSPVPPPPPIAK 832
            P + + N+  V   P  AK
Sbjct: 98  EPEAPAENTVTVAKDPRYAK 117

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.4 bits (116), Expect = 2e-05
 Identities = 40/248 (16%), Positives = 61/248 (24%), Gaps = 66/248 (26%)

Query: 633 PRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPE 692
           P   I+  A+      P P   P    +                     P +      P 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQ---------------PSAPKTKQAATTPS 405

Query: 693 TSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPP--------------PPPPTPPL----- 733
              +  +    +   P     T  +     PP                 P T  L     
Sbjct: 406 PPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLNLEELWQQILAKLELPSTRMLLSQQA 465

Query: 734 ------------------------KTP--------VFNRNTDASFSTPSPPASTVTLSTT 761
                                   + P        V  R+   +  + S  AS    +  
Sbjct: 466 ELVSLDSNRAVIAVSPNWLGMVQSRKPLLEQAFAKVLGRSIKLNLESQSGSASNTAKTPP 525

Query: 762 SSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNS 821
               +PPPP   P   Q    A PP PPPPP  +  ++S+  +      +PPPP     +
Sbjct: 526 PPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT 585

Query: 822 SPVPPPPP 829
                   
Sbjct: 586 PSPTKDSS 593

Length = 620

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.3 bits (116), Expect = 2e-05
 Identities = 30/169 (17%), Positives = 44/169 (26%), Gaps = 24/169 (14%)

Query: 681 KPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNR 740
            P++  P P     S+   +S   + AP  A A  ++   PPPP   P   P        
Sbjct: 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAP-------- 411

Query: 741 NTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSAS 800
                    +            +          P    +A RA P       L S   A 
Sbjct: 412 --AVPLPETTSQLLAARQQLQRAQGATKAKKSEP---AAASRARPVNSALERLASVRPAP 466

Query: 801 STVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSI 849
           S             P+           P   K      VA+P     ++
Sbjct: 467 SA--------LEKAPAKKEAYRWKATNPVEVKKEP---VATPKALKKAL 504

Length = 647

>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045)

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 75/324 (23%), Positives = 103/324 (31%), Gaps = 49/324 (15%)

Query: 586 SVSAEVTHQIPASPAIPDPNLASSCKHE-AAGLKSDSFSPTTPPPP---PAPRP-SIASS 640
           SVS   + Q+P    +   N   S ++  AA   +DS S          P+ RP S  S 
Sbjct: 23  SVSKRWSAQLP--SGLSRGNSFLSNRNSDAAPSGTDSLSGRPASRLNREPSSRPGSSHSE 80

Query: 641 ASKV--------PSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPE 692
           A+ V        P+ PP  +        S P+H      S S+ +D D+PS   P P+  
Sbjct: 81  ATIVRQAKEGERPATPPEARPDEGFVRPSLPSHPRSRSASVSNSKDGDRPSDLPPSPSKT 140

Query: 693 TSS---SGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDAS---- 745
                 S T ++   S       A  K   P   P PP      K     R + AS    
Sbjct: 141 MDPRRWSPTKATWLES-------ALNKPESPKHKPQPPQQPEWKKDLSRLRQSRASVDLG 193

Query: 746 ------FSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSA 799
                   TP     T    + S  P+    P  P     + R      P  P    SS 
Sbjct: 194 RTNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLP-----SSRDSEKTKPEKPQQETSSM 248

Query: 800 SSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPS------- 852
            +  SS   P     P     + P+       K    +   S   +    SPS       
Sbjct: 249 DTEKSSAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPK 308

Query: 853 --SGKGRLSRTISSRSHQTKKLKP 874
             S K   S   S R   + + KP
Sbjct: 309 AESPKPLASPGKSPRDPLSPRPKP 332

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length. Length = 414

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 3e-05
 Identities = 25/146 (17%), Positives = 41/146 (28%), Gaps = 19/146 (13%)

Query: 679 RDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVF 738
           R    +         + S   ++ + + AP  A   A +   P   P P P P       
Sbjct: 383 RRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPA------ 436

Query: 739 NRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSS 798
                     P+PP+         +P  PP         Q A      P P        +
Sbjct: 437 --------PAPAPPSPAGNAPAGGAPSPPPAAAPSA---QPAPAPAAAPEPTAA--PAPA 483

Query: 799 ASSTVSSPTIPLAPPPPSLSSNSSPV 824
             +  +    P AP  P+  + +   
Sbjct: 484 PPAAPAPAAAPAAPAAPAAPAGADDA 509

Length = 824

>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1

 Score = 47.9 bits (114), Expect = 3e-05
 Identities = 51/270 (18%), Positives = 82/270 (30%), Gaps = 47/270 (17%)

Query: 623 SPTTPP----PPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQD 678
           SP  PP    P PA       S +     P P   PPH  + + P+     + S      
Sbjct: 137 SPAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHTPTDTAPSGKRKRRLSDGFQLP 196

Query: 679 RDK--------PSSATPLPAPETSS-------SGTNSSTSLSTAPLPAPATAKSTFPPPP 723
             K         + + PLP   T+        + ++S + L T  +P P +  +     P
Sbjct: 197 APKRPQTSSRPQTVSDPLPLHATTDWDTWFQATVSSSPSLLLTGDIPPPVSVFAPDDSTP 256

Query: 724 -----------PPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPP---- 768
                      P  PP    L  P    ++ ++F+ P+  +S+V  S T           
Sbjct: 257 LDISLFNFPLIPLLPPEALDLPAPTAVSSSSSTFAVPALTSSSVDQSATPLDQGFSNFGS 316

Query: 769 ---PPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVP 825
                P  P  + S +   P         +   A ++ S   +  +      S +     
Sbjct: 317 NMYSEPLNPTND-SLLYGLPSSSSLYANRTIFPAWASTSVSPLDFSTLFNQPSPSP---M 372

Query: 826 PPPPIAKVVSKTGVASPVPAPPSISPSSGK 855
               I         A P    P   PSS  
Sbjct: 373 ASQSILA------PAQPTSPSPVALPSSEL 396

Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is C-terminal to the homeodomain transcription factor region. Length = 418

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 47.5 bits (113), Expect = 4e-05
 Identities = 24/167 (14%), Positives = 41/167 (24%), Gaps = 10/167 (5%)

Query: 694 SSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPP---PPPTPPLKTPVFNRNTDASFSTPS 750
           S      + +L+      P     + PP         P       P  +  +  +    S
Sbjct: 762 SLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKS 821

Query: 751 PPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPL 810
              +    S +S P  PP     P   +S+  +   P        G +       P    
Sbjct: 822 RSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRA 881

Query: 811 APPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGR 857
            P   +    ++  PP    A                 + P    G 
Sbjct: 882 RPGAAAPPKAAAAAPPAGAPAP-------RPRPAPRVKLGPMPPGGP 921

Length = 1352

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 29/137 (21%), Positives = 44/137 (32%), Gaps = 23/137 (16%)

Query: 645 PSPPPPP-------QLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSG 697
           P+P PP         +   +  +S P        +         P   +    PE  SS 
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 698 TNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVT 757
           ++SS      P P+   + +  P P  P  P  PP              + P PP     
Sbjct: 208 SDSSLP----PAPSSFQSDTPPPSPESPTNPSPPP------------GPAAPPPPPVQQV 251

Query: 758 LSTTSSPPTPPPPPKPP 774
              +++ PTPP     P
Sbjct: 252 PPLSTAKPTPPSASATP 268

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 47.6 bits (113), Expect = 5e-05
 Identities = 49/258 (18%), Positives = 75/258 (29%), Gaps = 60/258 (23%)

Query: 627 PPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSAT 686
           PPP        A   ++  + PPPP                                   
Sbjct: 257 PPPVVGEGADRAPETARGATGPPPPPEAAA------------------------------ 286

Query: 687 PLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPP-----------LKT 735
             P    +        +L+ APL  PA      PP PPPP P               + +
Sbjct: 287 --PNGAAAPPDGVWGAALAGAPLALPA------PPDPPPPAPAGDAEEEDDEDGAMEVVS 338

Query: 736 PVFNRNTDASFSTP-------SPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPP 788
           P+           P       +PP+S   LS     P     P    +++ + R    P 
Sbjct: 339 PLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPT---RKRRSARHAATPF 395

Query: 789 PPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPS 848
              P     +  +     ++P   P P  +S   P   P P A+  S  G A P P    
Sbjct: 396 ARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPP-PERQP 454

Query: 849 ISPSSGKGRLSRTISSRS 866
            +P++         ++R 
Sbjct: 455 PAPATEPAPDDPDDATRK 472

Length = 3151

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 47.5 bits (113), Expect = 5e-05
 Identities = 38/154 (24%), Positives = 50/154 (32%), Gaps = 14/154 (9%)

Query: 682 PSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAK----STFPPPPPPPPPPTPPLKTPV 737
            S A+    PE   + T  + +L+ A     AT      S FPP      P       P 
Sbjct: 594 ASGASNAEDPEVRRARTRGARALAQARTFGRATVGEMIISGFPPVFKTALP------RPD 647

Query: 738 FNRNTDASF-STPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSG 796
           +NR  +A     P P    +   T          P  P    +A+RA   P P  P   G
Sbjct: 648 YNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAPQAPRPGGPPGGG 707

Query: 797 SSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPI 830
                    P +P A  P    S+    P  PP 
Sbjct: 708 GGLP---PPPDLPAAAGPAPCGSSLIASPTAPPE 738

Length = 753

>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 687 PLPAPETSSSGTNSSTSLSTAPLPAPATAKST--FPPPPPPPPPPTPPLKTPVFNRNTDA 744
              +   SS  +  S+S ++ P+  P         PPPPPPPPPP P L+      +   
Sbjct: 150 STTSDLLSSDESVPSSSTTSFPISPPTEEPVLEVPPPPPPPPPPPPPSLQQSTSAIDLIK 209

Query: 745 SFSTPSPPAS-TVTLSTTSSPPTP 767
                   A  T+ LS   SP  P
Sbjct: 210 ERKGQRSAAGKTLVLSKPKSPEFP 233

In eukaryotes, this family of proteins induces mitochondrial fission. Length = 248

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 46.8 bits (111), Expect = 7e-05
 Identities = 49/264 (18%), Positives = 77/264 (29%), Gaps = 39/264 (14%)

Query: 632 APRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAP 691
           AP   +    +K+PS   PP                  KES +    +  P+     P  
Sbjct: 311 APLTPMEELLAKIPSQRVPP------------------KESDAADGPKPVPTKPVT-PEA 351

Query: 692 ETSSSGTNSSTSLSTAPLP-APATAKSTFPPP--PPPPPPPTPPLKTPVFNRNTDASFST 748
            +           +  P P +P TA     PP  P P PP + P  +   +     +   
Sbjct: 352 PSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPD 411

Query: 749 PSP---PASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSS 805
             P    AS V     +        P  P      ++    P P  P     S SST S 
Sbjct: 412 VVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSV 471

Query: 806 PTIPLAPPPPSLSSNSSPVPP--------------PPPIAKVVSKTGVASPVPAPPSISP 851
           P +P   P  + +  ++P P                PP +   +         +   +  
Sbjct: 472 PAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVK 531

Query: 852 SSGKGRLSRTISSRSHQTKKLKPL 875
                  +     + H   K +PL
Sbjct: 532 VGNSAPPTALADEQHHAQPKPRPL 555

Length = 576

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 46.0 bits (109), Expect = 7e-05
 Identities = 38/116 (32%), Positives = 44/116 (37%), Gaps = 28/116 (24%)

Query: 715 AKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPP 774
           A+S  P PP  P PP                   P+PP S       S   TPP PP P 
Sbjct: 4   ARSRSPSPPRRPSPP------------------RPTPPRS----PDASPEETPPSPPGPG 41

Query: 775 LKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPI 830
            +      AGP  P   P   G  A  T SS     APP P L  + +P   PPP+
Sbjct: 42  AEPPPGRAAGPAAPRRRP--RGCPAGVTFSSS----APPRPPLGLDDAPAATPPPL 91

Length = 318

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 46.7 bits (111), Expect = 8e-05
 Identities = 37/185 (20%), Positives = 52/185 (28%), Gaps = 21/185 (11%)

Query: 630 PPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLP 689
            P+  P+  + A  +  P  P +           A F            R         P
Sbjct: 760 NPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAF------------RRPGRLRRSGP 807

Query: 690 APETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTP 749
           A + +S   +   S S  P     ++    PP     PPP          R++++S S P
Sbjct: 808 AADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPA---------RSSESSKSKP 858

Query: 750 SPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIP 809
           +              P PP P   P        A   PP   P      A      P  P
Sbjct: 859 AAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPP 918

Query: 810 LAPPP 814
             P P
Sbjct: 919 GGPDP 923

Length = 1352

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 45.7 bits (108), Expect = 8e-05
 Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 27/110 (24%)

Query: 683 SSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNT 742
           +SA  +  P T+++         +    APA A    PPPP  PP P P           
Sbjct: 26  ASAVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQP----------D 75

Query: 743 DASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPP 792
           D + + P PPA          P  PPPPP  P          PPPP P P
Sbjct: 76  DPNAAPPPPPA---------DPNAPPPPPVDP--------NAPPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 45.6 bits (107), Expect = 8e-05
 Identities = 43/134 (32%), Positives = 51/134 (38%), Gaps = 24/134 (17%)

Query: 682 PSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRN 741
           PS A   PAP   +    +     T P PAPA   +T P  PPP   P            
Sbjct: 84  PSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCP------------ 131

Query: 742 TDASFSTPSPPASTVTLSTTSSPPTPP-PPPKP-PLKEQSAIRAGPPPPPPP----PLYS 795
                  P+ PA     ST   PP PP P PKP P  +   +    PPP  P    P   
Sbjct: 132 ------APARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIE 185

Query: 796 GSSASSTVSSPTIP 809
            + A+S V  P IP
Sbjct: 186 TAPAASPVLEPRIP 199

Length = 280

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 45.8 bits (109), Expect = 9e-05
 Identities = 25/127 (19%), Positives = 32/127 (25%), Gaps = 4/127 (3%)

Query: 618 KSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQ 677
           + D  +           P   +  +      PP   P      S     P    S S   
Sbjct: 156 EEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPS----PPEDPSSPSDSS 211

Query: 678 DRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPV 737
               PSS      P +  S TN S     A  P P   +        P PP       P+
Sbjct: 212 LPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPI 271

Query: 738 FNRNTDA 744
                D 
Sbjct: 272 GGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.4 bits (111), Expect = 9e-05
 Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 14/130 (10%)

Query: 718 TFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKE 777
            F P  P P P  PP            S +  +   +T   +   +PP  P  P PP   
Sbjct: 358 AFHPAAPLPEPEVPP-----------QSAAPAASAQATAAPTAAVAPPQAPAVPPPP--- 403

Query: 778 QSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKT 837
            SA +  P  P P       +A   +              ++ S   P    + ++ S  
Sbjct: 404 ASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVR 463

Query: 838 GVASPVPAPP 847
              S +   P
Sbjct: 464 PAPSALEKAP 473

Length = 647

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 43.8 bits (103), Expect = 9e-05
 Identities = 45/140 (32%), Positives = 51/140 (36%), Gaps = 35/140 (25%)

Query: 720 PPPPP-------PPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPP--- 769
           PPPPP       PPPPP P                   PP   +   T   PP P P   
Sbjct: 1   PPPPPLPGGVGIPPPPPLPG--------------GVCIPPPPPLPGGTGIPPPPPLPGGA 46

Query: 770 --PPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPP 827
             PP PPL   + I      PPPPPL   ++       P     PPPP L   +   PPP
Sbjct: 47  AIPPPPPLPGVAGI------PPPPPLPGATAIPPPPPLPGAAGIPPPPPLPGGAGIPPPP 100

Query: 828 PPIAKVVSKTGVASPVPAPP 847
           PP+        V  P P P 
Sbjct: 101 PPLPGGA---AVPPPPPLPG 117

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 43.8 bits (103), Expect = 9e-05
 Identities = 50/157 (31%), Positives = 55/157 (35%), Gaps = 29/157 (18%)

Query: 708 PLPAPATAKSTFPPPPP-------PPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLST 760
           P P P       PPPPP       PPPPP P                 P PP      + 
Sbjct: 13  PPPPPLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGIPPPPPLPGATAI 72

Query: 761 TSSPPTPPP---PPKPPLKEQSAIRAGPPP-------PPPPPLYSGSSASSTVSSPTIPL 810
              PP P     PP PPL   + I   PPP       PPPPPL  G         P +P 
Sbjct: 73  PPPPPLPGAAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGG---------PGVPP 123

Query: 811 APPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPP 847
            PPP      +  +PPPPP             VPA P
Sbjct: 124 PPPPF---PGAPGIPPPPPGMGSPPPPPFGFGVPAAP 157

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.1 bits (110), Expect = 1e-04
 Identities = 26/126 (20%), Positives = 35/126 (27%), Gaps = 12/126 (9%)

Query: 744 ASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTV 803
           A    P  PAS+      + P  P  P  P         A       P   S + A    
Sbjct: 595 AGGEGPPAPASSGPPEEAARPAAPAAPAAPAA------PAPAGAAAAPAEASAAPAPGVA 648

Query: 804 SSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTIS 863
           +    P     P  S      P     A        A+P PAP   +P++  G      +
Sbjct: 649 APEHHPKHVAVPDASDGGDGWPAKAGGA------APAAPPPAPAPAAPAAPAGAAPAQPA 702

Query: 864 SRSHQT 869
                T
Sbjct: 703 PAPAAT 708

Length = 824

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.4 bits (110), Expect = 1e-04
 Identities = 29/162 (17%), Positives = 47/162 (29%), Gaps = 14/162 (8%)

Query: 704 LSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSS 763
           L+  P      A     P       P P  +       +     T    A+   L+  ++
Sbjct: 356 LAFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAA 415

Query: 764 PP----TPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAP-PPPSLS 818
                     PP  P    +A R         P+ + ++A ++  S        PP    
Sbjct: 416 AAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSG 475

Query: 819 SNSSPVPPPPPIAK---------VVSKTGVASPVPAPPSISP 851
           S S+P    PP A            + T  A P    P+ + 
Sbjct: 476 SASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAAS 517

Length = 830

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.0 bits (109), Expect = 1e-04
 Identities = 23/157 (14%), Positives = 35/157 (22%), Gaps = 9/157 (5%)

Query: 710 PAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPP 769
           PA  T         P       P           AS        +               
Sbjct: 360 PAV-TGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVT--------GAAGAAL 410

Query: 770 PPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPP 829
            PK      +     PP  P PP  +     +      +P      + + +        P
Sbjct: 411 APKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQP 470

Query: 830 IAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSRS 866
            A   S +  AS  P   +  P+      S    +  
Sbjct: 471 PADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAV 507

Length = 830

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 46.2 bits (109), Expect = 1e-04
 Identities = 50/242 (20%), Positives = 71/242 (29%), Gaps = 18/242 (7%)

Query: 608 SSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLP-----PHHFSSSC 662
              +    G   +      P P    +PS   + SK P  P  P+ P     P       
Sbjct: 542 EPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPR 601

Query: 663 PAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPP 722
            A  P   +S    +  D P S     +P++           S      P   KS   PP
Sbjct: 602 SAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSP-KPP 660

Query: 723 PPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIR 782
             P PP  P  K   ++   DA+  +        T +T     +     K  L E     
Sbjct: 661 KSPKPPFDPKFKEKFYDDYLDAAAKSKE------TKTTVVLDESFESILKETLPETPGTP 714

Query: 783 AGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASP 842
              P P PP L            P  P+  P      +     PP        +T   +P
Sbjct: 715 FTTPRPLPPKL------PRDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTP 768

Query: 843 VP 844
           +P
Sbjct: 769 LP 770

Length = 943

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.6 bits (109), Expect = 1e-04
 Identities = 25/169 (14%), Positives = 40/169 (23%), Gaps = 7/169 (4%)

Query: 599 PAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHF 658
           PA P P                + +  T  P  A  P  A +    P+  P         
Sbjct: 361 PAAPLPEPEVP----PQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLP 416

Query: 659 SSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKST 718
            ++        +  ++    + K S           +S      S+  AP          
Sbjct: 417 ETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKK 476

Query: 719 FPP---PPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSP 764
                    P      P+ TP   +       TP   A     +    P
Sbjct: 477 EAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIERDP 525

Length = 647

>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1

 Score = 45.9 bits (109), Expect = 1e-04
 Identities = 45/229 (19%), Positives = 67/229 (29%), Gaps = 33/229 (14%)

Query: 629 PPPAPRPSIASSASKVPSPPPPPQLPPH----------HFSSSCPAHFPHTKESKSHMQD 678
             P+P  S A S+ ++ SP P                   SSS        ++       
Sbjct: 70  AYPSPERSPALSSERLLSPSPSVLDLSPVLASPQTGKRRRSSSPSDD----EDEAERPSK 125

Query: 679 RDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVF 738
           R +  S +   +P         S + ST    + A+A     P   PP  PT    +   
Sbjct: 126 RPRSDSISSSSSPAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHTPTDTAPSGKR 185

Query: 739 NRNTDASFSTPSPP-ASTVTLSTTSSPPTP----------------PPPPKPPLKEQSAI 781
            R     F  P+P    T +   T S P P                  P      +    
Sbjct: 186 KRRLSDGFQLPAPKRPQTSSRPQTVSDPLPLHATTDWDTWFQATVSSSPSLLLTGDIPPP 245

Query: 782 RAGPPPPPPPPL--YSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPP 828
            +   P    PL     +     +  P     P P ++SS+SS    P 
Sbjct: 246 VSVFAPDDSTPLDISLFNFPLIPLLPPEALDLPAPTAVSSSSSTFAVPA 294

Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is C-terminal to the homeodomain transcription factor region. Length = 418

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.4 bits (111), Expect = 1e-04
 Identities = 19/92 (20%), Positives = 22/92 (23%), Gaps = 18/92 (19%)

Query: 701 STSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLST 760
           ST+  TA   A A A S     P    P  P                 P+PPA+      
Sbjct: 40  STAAPTAAAAAAAAAASAPAAAPAAKAPAAP----------------APAPPAAAA--PA 81

Query: 761 TSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPP 792
               P              A  A   P     
Sbjct: 82  APPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.4 bits (111), Expect = 1e-04
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 13/100 (13%)

Query: 687 PLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASF 746
           P      +++   ++ + S       A A +   P PP    P  P K            
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKP----------- 86

Query: 747 STPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPP 786
              +  A+    +  ++     P       E + +R G  
Sbjct: 87  -AAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLR-GAA 124

Length = 1228

>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation factor (transactivator)

 Score = 45.9 bits (109), Expect = 1e-04
 Identities = 42/207 (20%), Positives = 61/207 (29%), Gaps = 15/207 (7%)

Query: 659 SSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSL---STAPLPAPATA 715
            S      PH    +     +  PSSA P  +   S     S+ S    ++A   APA+ 
Sbjct: 210 LSQFHGFTPHPSLPQPQSPLKPSPSSARPQQSESFSDVWPASTQSPREETSAEPLAPASP 269

Query: 716 KSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPL 775
            S  P                      +    +  P +S    S   +P T  P   PP 
Sbjct: 270 SSRRPSTAQEEQIACSS-----PQAEPEQGVQSYVPQSSDSRPSCFPAPSTTQPTFLPPN 324

Query: 776 KEQSAIRAGPPPPPPPPLYSGSSAS-----STVSSPTIPLAPPPPSLSSNSS--PVPPPP 828
             + A R   P    P    G++ S      TV +P    +    S  SNS         
Sbjct: 325 TNKKAKRDRRPQMVTPKQEGGAAVSQNHDGGTVRAPRGRPSGSGQSPPSNSPLLSSLADT 384

Query: 829 PIAKVVSKTGVASPVPAPPSISPSSGK 855
           P         +  P      +  +S K
Sbjct: 385 PSGAAHQPASLLPPAVVQQQLEDASDK 411

This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses. Length = 500

>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G

 Score = 45.8 bits (108), Expect = 1e-04
 Identities = 29/136 (21%), Positives = 43/136 (31%), Gaps = 12/136 (8%)

Query: 689 PAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFST 748
           PA +   + T +    ST P+    T  S+ P P   PPP            +     ST
Sbjct: 199 PATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSG-----SPQHPPST 253

Query: 749 PSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSA----SSTVS 804
            S   ST       +      PP    +      +   PPP              ++T  
Sbjct: 254 TSQDQSTTGDGQEHTQ-RRKTPPATSNRRS--PHSTATPPPTTKRQETGRPTPRPTATTQ 310

Query: 805 SPTIPLAPPPPSLSSN 820
           S + P    PP + +N
Sbjct: 311 SGSSPPHSSPPGVQAN 326

Length = 408

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 27/103 (26%), Positives = 33/103 (32%), Gaps = 17/103 (16%)

Query: 682 PSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRN 741
           PS   P PAP T      ++      P+   AT     P P  PP P TP          
Sbjct: 376 PSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTP---------- 425

Query: 742 TDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAG 784
                   S P  T         P   PP  P  +E++ I  G
Sbjct: 426 -------ESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADG 461

Length = 585

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 44.7 bits (105), Expect = 3e-04
 Identities = 53/271 (19%), Positives = 85/271 (31%), Gaps = 23/271 (8%)

Query: 595 IPASPAIPDPNLASSCKH-EAAGLKSDSFSPTTPPPPPA-PRPSIASSASKVPSPPPPPQ 652
           +P SP  P     + C + E   ++SD  + T P      P P +     +  + P   Q
Sbjct: 525 LPPSPPQPRAGRRAPCVYTEDLDIESDEPASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQ 584

Query: 653 LPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAP 712
           L     +SS P++           Q  + P++ + +P    +S+       L   P+   
Sbjct: 585 L-----ASSAPSYAQTPWPVPHPSQTPEPPTTQSHIPE---TSAPRQWPMPLRPIPMRPL 636

Query: 713 ATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLS--------TTSSP 764
                TF     P P   P ++   +          P  P+ T   +         T  P
Sbjct: 637 RMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQP 696

Query: 765 PTPPPPPKPPLKEQSAIR---AGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNS 821
           P   P P  P           A       PP  +   A    ++P     PP  +     
Sbjct: 697 PPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPG-RARPPAAAPGRAR 755

Query: 822 SPVPPPPPIAKVVSKTGVASPVPAPPSISPS 852
            P   P       +  G  +P P PP   P+
Sbjct: 756 PPAAAPGRARPPAAAPGAPTPQP-PPQAPPA 785

Length = 991

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 37/161 (22%), Positives = 53/161 (32%), Gaps = 25/161 (15%)

Query: 624 PTTPPPPPAPRPSIASSASKVPSP-PPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKP 682
           P   PP          + +   +  P     P     S  P+  P      S  +D   P
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 683 SSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNT 742
           S ++  PAP        SS    T P    +    + PP P  PPPP      P+     
Sbjct: 208 SDSSLPPAP--------SSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPL----- 254

Query: 743 DASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRA 783
             S + P+PP         S+  TP P     L + +  +A
Sbjct: 255 --STAKPTPP---------SASATPAPIGGITLDDDAIAKA 284

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.5 bits (106), Expect = 3e-04
 Identities = 21/166 (12%), Positives = 42/166 (25%), Gaps = 11/166 (6%)

Query: 679 RDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVF 738
                   P   P++++   ++  + +     AP  A +  PPP   P            
Sbjct: 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETT 419

Query: 739 NRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSS 798
           ++   A         +T    +  +  +   P    L+  +++R  P      P      
Sbjct: 420 SQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP------ 473

Query: 799 ASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVP 844
                           P       PV  P  + K +          
Sbjct: 474 ----AKKEAYRWKATNPVE-VKKEPVATPKALKKALEHEKTPELAA 514

Length = 647

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 45.1 bits (106), Expect = 3e-04
 Identities = 70/334 (20%), Positives = 109/334 (32%), Gaps = 54/334 (16%)

Query: 576 HKPLLHDH---------ALSVSAEVTHQIPASPAIPDPNLAS--SCKHEAAGLKSDSFSP 624
           + PLL+           A + +A  +   P  P    P +AS      +          P
Sbjct: 307 YDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGP 366

Query: 625 TTPPPPPAPRPSIASSASKVPSP----------PPPPQLPPHHFSSSCPAHFPHTKESKS 674
            T  P  AP P      S+   P          P  PQ P +  ++  PA  P+   +  
Sbjct: 367 QTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPE 426

Query: 675 HMQDRDKPSSATPLP-------APETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPP--- 724
               +   + A   P       A E  S+    ST  +      PA  +  +  P P   
Sbjct: 427 QPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQ 486

Query: 725 ---PPPPP----TPPLKTPVF-----------NRNTDASFSTPSPPASTVTLSTTSSPPT 766
                P P    T P + P++            R   A++  P P          SS   
Sbjct: 487 QPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKA 546

Query: 767 PPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLA---PPPPSLSSNSSP 823
           P     PP++  +A+   P           + A++TV++P   LA    P P +     P
Sbjct: 547 PSVAAVPPVEAAAAV--SPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGP 604

Query: 824 VPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGR 857
             P P   +V ++  +AS     PS   +  K R
Sbjct: 605 QLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAR 638

Length = 1355

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.8 bits (106), Expect = 3e-04
 Identities = 31/160 (19%), Positives = 42/160 (26%), Gaps = 35/160 (21%)

Query: 669 TKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPP 728
                   +   KP    P  AP+            S A   +P+ ++S+    P  P  
Sbjct: 368 DASGGRGPKQHIKPVFTQPAAAPQP-----------SAAAAASPSPSQSSAAAQPSAPQS 416

Query: 729 PTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPP 788
            T P  TP    + D   + P  P ST        P    P      K          P 
Sbjct: 417 ATQPAGTPP-TVSVDPPAAVPVNPPSTA-------PQAVRPAQFKEEK--------KIPV 460

Query: 789 PPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPP 828
                   S  SS   S   P+       + N    P   
Sbjct: 461 --------SKVSSLGPSTLRPIQEKAEQATGNIKEAPTGT 492

Length = 614

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 44.4 bits (104), Expect = 4e-04
 Identities = 41/190 (21%), Positives = 58/190 (30%), Gaps = 17/190 (8%)

Query: 690 APETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTP 749
           AP+T+ S     T +   P     TA  T P  PP    PT     P     T  + ST 
Sbjct: 425 APDTTKSVIFVYTLVHVEP--HKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTL 482

Query: 750 SPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPP-----PPPPLYSGSSASSTVS 804
               S  + +T+++P    P P       ++              P P+  G + ++T  
Sbjct: 483 PEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSP 542

Query: 805 -----SPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLS 859
                S     +P         SPV        V S   V +           S      
Sbjct: 543 PTGTTSVPNATSPQVTE----ESPVNNTNT-PVVTSAPSVLTSAVTTGQHGTGSSPTSQQ 597

Query: 860 RTISSRSHQT 869
             I S SH T
Sbjct: 598 PGIPSSSHST 607

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.5 bits (106), Expect = 4e-04
 Identities = 26/158 (16%), Positives = 46/158 (29%), Gaps = 15/158 (9%)

Query: 623 SPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKP 682
            P  PP   AP  S  ++A+   +  PP         +S P   P     ++  Q     
Sbjct: 367 EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLA-- 424

Query: 683 SSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNT 742
            +   L   + ++    S  + ++   P  +  +      P P      P K        
Sbjct: 425 -ARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAK-------K 476

Query: 743 DASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSA 780
           +A     + P           P   P   K  L+ +  
Sbjct: 477 EAYRWKATNPVEVKK-----EPVATPKALKKALEHEKT 509

Length = 647

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 43/139 (30%), Positives = 50/139 (35%), Gaps = 21/139 (15%)

Query: 708 PLPAPATAKSTFPPPPP-------PPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLST 760
           P P P    +  PPPPP       PPPPP P +           + + P PP        
Sbjct: 25  PPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGIPPPPPLPGATAIPPPPPLPGAAGI 84

Query: 761 TSSPPTPP----PPPKPPLKEQSAIRAGPP-------PPPPPPLYSGSSASSTVSSPTIP 809
              PP P     PPP PPL   +A+   PP       PPPPPP      A      P   
Sbjct: 85  PPPPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPF---PGAPGIPPPPPGM 141

Query: 810 LAPPPPSLSSNSSPVPPPP 828
            +PPPP         P  P
Sbjct: 142 GSPPPPPFGFGVPAAPVLP 160

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.5 bits (103), Expect = 5e-04
 Identities = 23/136 (16%), Positives = 37/136 (27%), Gaps = 6/136 (4%)

Query: 596 PASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPP 655
              P + + +  +      +               P+  PS +      PSPP  P  P 
Sbjct: 149 NPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPS 208

Query: 656 HHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATA 715
                  P+ F       S       P++ +P P P              +   P P +A
Sbjct: 209 DSSLPPAPSSFQSDTPPPSPES----PTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSA 264

Query: 716 KSTFPPPPPPPPPPTP 731
            +T  P P        
Sbjct: 265 SAT--PAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 5e-04
 Identities = 26/93 (27%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 760 TTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSS 819
               P   P P KP     S +R  P P   P   + ++       P    A PPP    
Sbjct: 358 ALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPK--EPVRETATPPPVPPR 415

Query: 820 N-SSPVPPPPPIAKVVSKTGVASPVPAPPSISP 851
             + PVP  P  A     T  A PV   P  +P
Sbjct: 416 PVAPPVPHTPESAP--KLTRAAIPVDEKPKYTP 446

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 44.1 bits (105), Expect = 5e-04
 Identities = 13/104 (12%), Positives = 19/104 (18%), Gaps = 21/104 (20%)

Query: 700 SSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLS 759
              S +     A A A +   P   P                       P+  A      
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPA-----------PPAAAAPAAPPK 85

Query: 760 TTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTV 803
             ++      P  PP                 P  +      T 
Sbjct: 86  PAAAAAAAAAPAAPP----------AAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 43.8 bits (103), Expect = 6e-04
 Identities = 46/247 (18%), Positives = 71/247 (28%), Gaps = 40/247 (16%)

Query: 607 ASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHF 666
           AS+   E      ++    TP    AP P     A + P+ P  P             H 
Sbjct: 43  ASNYDEELVQRALETARSDTPATAAAPAP-----APQAPTKPAAP------------VHA 85

Query: 667 PHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPP 726
           P    + ++M  R + +SA        + +     +    AP  AP  A S        P
Sbjct: 86  PLKLSANANMSQRQRVASAAE--DMIAAMALRQPVSVPRQAPAAAPVRAASI-------P 136

Query: 727 PPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPP 786
            P    L      R         S     +     ++ P P  P         A     P
Sbjct: 137 SPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAP-------VQAPVVAAP 189

Query: 787 PPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPI-------AKVVSKTGV 839
            P P    + ++ ++        L      L      + PP  +       A   +   V
Sbjct: 190 APVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPAALPPIVVAPAAPAALAAV 249

Query: 840 ASPVPAP 846
           A+  PAP
Sbjct: 250 AAAAPAP 256

Length = 559

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 43.7 bits (103), Expect = 6e-04
 Identities = 41/290 (14%), Positives = 59/290 (20%), Gaps = 50/290 (17%)

Query: 617 LKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHM 676
           L S      +  PP   R S  +S                    +       +       
Sbjct: 458 LHSSDKVIDSVSPPSKRRVSAPASRLD----------DAKRPEVTATPESSGSDSEGGAS 507

Query: 677 QDRDKPSSAT---PLPAPETSSSGTNSSTSLSTAP------LPAPATAKSTFPPPPPPPP 727
              D+ SS               G  + +    +P      L    +  S      P P 
Sbjct: 508 GREDETSSDAESVVSIKELRPRIGFINKSPPPKSPPKSRRTLIVALSLASPSTAGSPRPK 567

Query: 728 PPTPP--LKTPVFNR---NTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIR 782
           P      + T  F                   +      S+   P   P   LK  +   
Sbjct: 568 PSLGKFVIGTDPFAFANTVRLTDNMRGGNGVGSSVKPKGSASSKPLTGPGSDLKPATLNG 627

Query: 783 AGPPPPPPPP---------LYSGSSASSTVS-------SPTIPLAPPPPSLSSNSSPVPP 826
             P                +   S      S       +    L     +    + P   
Sbjct: 628 KTPSSSLVGAARNAGASSKVKIPSGLGGFTSPISLLESALEDVLTSATSTPVKKNDPYLW 687

Query: 827 PPPIAKVVSKTGVASPVP----------APPSISPSSGKGRLSRTISSRS 866
                K    T  AS               P   P   K  LSR + S S
Sbjct: 688 DTNGEKAGGGTESASTTDVFQNFAGLNKKTPVGGPFQPKPPLSRALDSAS 737

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.8 bits (103), Expect = 6e-04
 Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 6/83 (7%)

Query: 701 STSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLST 760
              ++ +P  +P   K    P  P P     P K              PSP ++    + 
Sbjct: 377 DGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKP---EAPGARPAELPSPASAP---TP 430

Query: 761 TSSPPTPPPPPKPPLKEQSAIRA 783
              PP     P PP  + SA R 
Sbjct: 431 EQQPPVARSAPLPPSPQASAPRN 453

Length = 620

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.8 bits (104), Expect = 7e-04
 Identities = 26/110 (23%), Positives = 36/110 (32%), Gaps = 14/110 (12%)

Query: 623 SPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKP 682
           +P   P P A  P+ A++ +   +P P P   P   +   PA       + S        
Sbjct: 405 APAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAP-APPSPAGNAPAGGAPSPPPAAAPS 463

Query: 683 SSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPP 732
           +   P PA              +  P  APA A    P P   P  P  P
Sbjct: 464 AQPAPAPAA-------------APEPTAAPAPAPPAAPAPAAAPAAPAAP 500

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.4 bits (103), Expect = 7e-04
 Identities = 35/230 (15%), Positives = 50/230 (21%), Gaps = 52/230 (22%)

Query: 688 LPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFS 747
           LP+   S     S+ +  T             P  P      T P   P           
Sbjct: 360 LPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPA---------K 410

Query: 748 TPSPPASTVTLSTTSSPPTPPPPPKPP---LKEQ-SAIRAGPPPPPPPPLYS-------- 795
              P       +  S  P       PP   L+E    I A    P    L S        
Sbjct: 411 ASPPIPVPAEPTEPSPTPPANAANAPPSLNLEELWQQILAKLELPSTRMLLSQQAELVSL 470

Query: 796 -GSSASSTVS------------------------------SPTIPLAPPPPSLSSNSSPV 824
             + A   VS                                    A             
Sbjct: 471 DSNRAVIAVSPNWLGMVQSRKPLLEQAFAKVLGRSIKLNLESQSGSASNTAKTPPPPQKS 530

Query: 825 PPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSRSHQTKKLKP 874
           PPPP     + +    +P P PP   P++ +   +      +  +     
Sbjct: 531 PPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPI 580

Length = 620

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 43.2 bits (102), Expect = 7e-04
 Identities = 20/114 (17%), Positives = 28/114 (24%), Gaps = 5/114 (4%)

Query: 715 AKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPP 774
           A+  + P P  PPP     +       T A      P       +T +  P   PP    
Sbjct: 45  AEFPWDPSPQAPPPVAQLPQPLPQPPPTQA--LQALPAGDQQQHNTPTGSPAANPPATFA 102

Query: 775 LKEQSAIRAGPPPP---PPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVP 825
           L    A       P    P  +    + +   S    P               P
Sbjct: 103 LPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAP 156

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 43.4 bits (102), Expect = 8e-04
 Identities = 36/128 (28%), Positives = 45/128 (35%), Gaps = 30/128 (23%)

Query: 720 PPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQS 779
           P    PPPP + P   P  +    ++ STP      V+ +     P+P  P  PP     
Sbjct: 183 PGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPP----- 237

Query: 780 AIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGV 839
              A  P PP PP+              I    PP        PVPPP PI  +     V
Sbjct: 238 ---ASIPAPPIPPV--------------IQYVAPP--------PVPPPQPIIPIQHIRAV 272

Query: 840 ASPVPAPP 847
               PA P
Sbjct: 273 TGETPANP 280

Length = 582

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.3 bits (103), Expect = 9e-04
 Identities = 27/175 (15%), Positives = 39/175 (22%), Gaps = 24/175 (13%)

Query: 622 FSPTTP-PPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRD 680
           F P  P P P  P  S A +AS   +  P   + P    +                    
Sbjct: 359 FHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAV------------------- 399

Query: 681 KPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNR 740
            P      P    +     +++ L  A         +T      P              R
Sbjct: 400 -PPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALER 458

Query: 741 NTDASFSTPSPPASTVTLSTTSS--PPTPPPPPKPPLKEQSAIRAGPPPPPPPPL 793
                   PS                  P    K P+    A++        P L
Sbjct: 459 LASVR-PAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPEL 512

Length = 647

>gnl|CDD|216648 pfam01690, PLRV_ORF5, Potato leaf roll virus readthrough protein

 Score = 43.2 bits (102), Expect = 9e-04
 Identities = 38/205 (18%), Positives = 47/205 (22%), Gaps = 29/205 (14%)

Query: 692 ETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSP 751
           E S S  +         L   +T +   PP P          KTP          S+   
Sbjct: 236 EASRSSNHVRRPPRPGHLLVVSTPELVLPPEPDEQSSERQTFKTP------PQPESSSDA 289

Query: 752 PASTV---------TLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPP-----PPLYSGS 797
               V          +S  S    PP              A P  P             S
Sbjct: 290 ENGLVSLVDEDDKEEVSRDSESDAPPDDTDLTRALAEYEAAAPEVPDAARTVLQGKEQPS 349

Query: 798 SASSTVSSPTIPLAPPPP------SLSSNSSPVPPPPPIA-KVVSKTGVASPVPAPPSIS 850
                   P +    P         L   S      P  A    S    A     P S  
Sbjct: 350 PDPVESPGPDLTPGYPKSDEVAGTYLGGGSVAEGRDPLEADPTPSTVLDARKEKGPSSSG 409

Query: 851 PSSGKGRLSRTISSRSHQTKKLKPL 875
             S  G   +  +  S  T+ LK L
Sbjct: 410 SGSLSGGTLKGKAESS--TETLKKL 432

This family consists mainly of the potato leaf roll virus readthrough protein. This is generated via a readthrough of open reading frame 3 a coat protein allowing transcription of open reading frame 5 to give an extended coat protein with a large c-terminal addition or read through domain. The readthrough protein is thought to play a role in the circulative aphid transmission of potato leaf roll virus. Also in the family is open reading frame 6 from beet western yellows virus and potato leaf roll virus both luteovirus and an unknown protein from cucurbit aphid-borne yellows virus a closterovirus. Length = 460

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 43.2 bits (102), Expect = 0.001
 Identities = 33/156 (21%), Positives = 45/156 (28%), Gaps = 12/156 (7%)

Query: 705 STAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSP 764
                 A A A      P        P      F R      S P+  A++ T S   S 
Sbjct: 763 LVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSR 822

Query: 765 PTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPV 824
              P              +  P  PP        A S+ SS + P A    +   N    
Sbjct: 823 SHTP---------DGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRR 873

Query: 825 PPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSR 860
           P PP      ++ G A+P  A  +  P+       R
Sbjct: 874 PRPPEPR---ARPGAAAPPKAAAAAPPAGAPAPRPR 906

Length = 1352

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.1 bits (102), Expect = 0.001
 Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 15/110 (13%)

Query: 623 SPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKP 682
           S     P  AP P+ A+ A+   +P P     P    +  PA                  
Sbjct: 400 SAAAAAPAAAPAPAAAAPAA-AAAPAPAAAPQPAPAPAPAPAP-----------PSPAGN 447

Query: 683 SSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPP 732
           + A   P+P  +++ +        AP  AP    +  P PP  P P   P
Sbjct: 448 APAGGAPSPPPAAAPSAQPA---PAPAAAPEPTAAPAPAPPAAPAPAAAP 494

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.1 bits (102), Expect = 0.001
 Identities = 52/313 (16%), Positives = 74/313 (23%), Gaps = 70/313 (22%)

Query: 623 SPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKP 682
           +    P   AP  + A + +  P P P P   P    +                     P
Sbjct: 407 AAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAP----APPSPAGNAPAGGAPSPPPAAAP 462

Query: 683 SSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTP------ 736
           S A P PAP  +   T +      AP  APA A +   P  P  P       T       
Sbjct: 463 S-AQPAPAPAAAPEPTAAPAP---APPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPE 518

Query: 737 ----VFNRN--------TDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKE------- 777
               V  R+         +A+          +  ST              L         
Sbjct: 519 ILAAVPKRSRKTWAILLPEATVLGVRGDTLVLGFST------------GGLARRFASPGN 566

Query: 778 --------------QSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSP 823
                            + A   P P      G  A ++   P     P  P     ++P
Sbjct: 567 AEVLVTALAEELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAP-----AAP 621

Query: 824 VPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSRSHQTKKLKPLHWLKLTRA 883
             P  P          A+  PA  S +P+ G           +          W      
Sbjct: 622 AAPAAP------APAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGG 675

Query: 884 VQGSLWAEAQKSG 896
              +    A    
Sbjct: 676 AAPAAPPPAPAPA 688

Length = 824

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 40/160 (25%), Positives = 50/160 (31%), Gaps = 47/160 (29%)

Query: 624 PTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPS 683
           P T    PAP P   S+A+  P+P  PP  P                           P 
Sbjct: 34  PATANADPAPPPPPPSTAAAAPAPAAPPPPP---------------------------PP 66

Query: 684 SATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTD 743
           +A P P P               A  P P    +  PPPP  P  P PP   P    N  
Sbjct: 67  AAPPAPQP-----------DDPNAAPPPPPADPNAPPPPPVDPNAPPPPAPEPGRIDNAV 115

Query: 744 ASFSTPSPPASTVTLST---------TSSPPTPPPPPKPP 774
             FS   P     + +T         + +   PP P +PP
Sbjct: 116 GGFSYVVPAGWVESDATHLDYGSALLSKTTGEPPMPGQPP 155

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 42.8 bits (100), Expect = 0.001
 Identities = 64/368 (17%), Positives = 106/368 (28%), Gaps = 35/368 (9%)

Query: 393 TNLIQEMSDTESPPSAGICSLLQELSPRDHQDKKSQSELDNSPKTSPKDYRNMIINASNL 452
           T +  E   T + P+                D  S +    +  T P+D        S  
Sbjct: 437 TLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSAT 496

Query: 453 IQETSDSGSPPSMIISSL-LQELSPRGHQHKKTHVVDEDSTKSSLPSAVKTQSVLLPKMS 511
              TS + +  +   +S   Q+ S   +    T +V   +T ++ P    T       + 
Sbjct: 497 PNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTS------VP 550

Query: 512 PDTDESKANEEPQDPRNALQVCNQSVDNFQKTSKSSQTTSLSCNSVQVSSLSVSGHHDAS 571
             T      E P +  N   V +         +     T  S  S Q    S S     S
Sbjct: 551 NATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRS 610

Query: 572 LAPCHKPLLHDHALSVSAEVTHQIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPP 631
            +    PLL     +    +T + P+ P+                  +   S  +P P P
Sbjct: 611 NSTSTTPLLTSAHPTGGENITEETPSVPS------------------TTHVSTLSPGPGP 652

Query: 632 APRPSIASSASKVPSPPPPPQ-----LPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSAT 686
                ++   +   S  P        +P  + +S      P  +++           + +
Sbjct: 653 GTTSQVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSA---PSGQKTAVPTVTSTGGKANS 709

Query: 687 PLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASF 746
                ETS S   +STS  T       T  +     PP       P  T      T    
Sbjct: 710 T--TKETSGSTLMASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQA 767

Query: 747 STPSPPAS 754
           + P PP  
Sbjct: 768 TVPVPPTQ 775

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 26/147 (17%), Positives = 31/147 (21%), Gaps = 31/147 (21%)

Query: 711 APATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPP 770
                 +  P PPPP    T   + P   R     +    P A             P   
Sbjct: 86  ITVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGY--GGPRADDRPPGLPRQDQLPTAR 143

Query: 771 PKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPI 830
           P  P  +Q     G  P                      L  PP +        P   P 
Sbjct: 144 PAYPAYQQRP-EPGAWPRAADDY----------GWQQQRLGFPPRA--------PYASP- 183

Query: 831 AKVVSKTGVASPVPAPPSISPSSGKGR 857
                    AS  P           GR
Sbjct: 184 ---------ASYAPEQERDREPYDAGR 201

Length = 617

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 19/86 (22%), Positives = 28/86 (32%)

Query: 692 ETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSP 751
           E+ S   +++      P  +P     T P P P    P P    P       +S +    
Sbjct: 511 ESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQI 570

Query: 752 PASTVTLSTTSSPPTPPPPPKPPLKE 777
           PA +         PTP P      +E
Sbjct: 571 PADSSPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.9 bits (102), Expect = 0.001
 Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 8/110 (7%)

Query: 745 SFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVS 804
           +   P P     + +  +S      P       Q+     PP   P       + +  + 
Sbjct: 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQ-----APAVPLP 416

Query: 805 SPTIPLAPPPPSLSS--NSSPVPPPPPIAKVVSKTGVASPVPAPPSISPS 852
             T  L      L     ++      P A   ++  V S +    S+ P+
Sbjct: 417 ETTSQLLAARQQLQRAQGATKAKKSEPAAASRARP-VNSALERLASVRPA 465

Length = 647

>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation factor (transactivator)

 Score = 42.8 bits (101), Expect = 0.001
 Identities = 50/255 (19%), Positives = 66/255 (25%), Gaps = 51/255 (20%)

Query: 604 PNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCP 663
           P    S + E +       SP++  P  A    IA S+     P    Q      S S P
Sbjct: 249 PASTQSPREETSAEPLAPASPSSRRPSTAQEEQIACSSP-QAEPEQGVQSYVPQSSDSRP 307

Query: 664 AHFPHTKESKS---------------------HMQDRDKPSSATPLP----APETSSSGT 698
           + FP    ++                        Q+     S         AP    SG+
Sbjct: 308 SCFPAPSTTQPTFLPPNTNKKAKRDRRPQMVTPKQEGGAAVSQNHDGGTVRAPRGRPSGS 367

Query: 699 NSS--------TSLSTAPLPAPATAKSTFPPPPPPPP-----PPTPPLKTPVFNRNTDAS 745
             S        +SL+  P  A     S  PP              PP          D  
Sbjct: 368 GQSPPSNSPLLSSLADTPSGAAHQPASLLPPAVVQQQLEDASDKQPPTPGSSLVPQPDEQ 427

Query: 746 FSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSS 805
              PS  A                 P P L + S          PP L   + +     S
Sbjct: 428 ELGPSVMALL---DRDQGILALILAPIPGLYDLSG---------PPNLLLDTISQELQQS 475

Query: 806 PTIPLAPPPPSLSSN 820
            T PL+  P    S 
Sbjct: 476 TTDPLSDSPRRQLSF 490

This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses. Length = 500

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 23/118 (19%), Positives = 32/118 (27%), Gaps = 12/118 (10%)

Query: 737 VFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSG 796
           +  +  DAS     P      + T  +    P          S   A   P  P      
Sbjct: 362 LTQKGDDASGGR-GPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQS---- 416

Query: 797 SSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSG 854
            +     + PT+ + PP         PV PP    + V           P S   S G
Sbjct: 417 -ATQPAGTPPTVSVDPPAA------VPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLG 467

Length = 614

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 38/169 (22%), Positives = 57/169 (33%), Gaps = 25/169 (14%)

Query: 761 TSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSN 820
            +S    P     P+  Q A       P P    + S + S  S+   P AP   +  + 
Sbjct: 368 DASGGRGPKQHIKPVFTQPA-----AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAG 422

Query: 821 SSP-VPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSRSHQTKKLKPLHWLK 879
           + P V   PP A       V  P  AP ++ P+  K      +S    +   L P     
Sbjct: 423 TPPTVSVDPPAA-----VPVNPPSTAPQAVRPAQFKEEKKIPVS----KVSSLGPS---- 469

Query: 880 LTRAVQGSLWAEAQKSGEASKAPEIDMSELENL------FSATIPNSEK 922
             R +Q           EA    + ++   E+L      F+ T P  EK
Sbjct: 470 TLRPIQEKAEQATGNIKEAPTGTQKEIFTEEDLQYYWQEFAGTRPQEEK 518

Length = 614

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 31/188 (16%), Positives = 46/188 (24%), Gaps = 31/188 (16%)

Query: 640 SASKV------PSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPET 693
           S S V      PSP  PP +         P   P              P +      P  
Sbjct: 40  SQSGVAEFPWDPSPQAPPPVAQL------PQPLPQP------------PPTQALQALPAG 81

Query: 694 SSSGTNSSTSLSTA-PLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDA------SF 746
                N+ T    A P    A       P     P    P++ PV      A        
Sbjct: 82  DQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPA 141

Query: 747 STPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSP 806
              +           +S   P         ++S ++  P    PP    G+    + +  
Sbjct: 142 QQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDESEALV 201

Query: 807 TIPLAPPP 814
            +  A   
Sbjct: 202 RLREADGT 209

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 721 PPPPPPPPPTPPLKTPVFNRNTDASFSTPS-PPASTVTLSTTSSPPTPPPPPKPP 774
           PP PP P   P  ++P     T    STP+ PPA    +   ++ P P  PP+PP
Sbjct: 84  PPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPP 138

Length = 141

>gnl|CDD|177646 PHA03418, PHA03418, hypothetical E4 protein; Provisional

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 44/167 (26%), Positives = 55/167 (32%), Gaps = 22/167 (13%)

Query: 628 PPPPAPR-PSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSAT 686
           P  PAP  P+      K PSPPP P L P       P   P+           +KP   T
Sbjct: 34  PLLPAPHHPNPQEDPDKNPSPPPDPPLTPR------PPAQPNG---------HNKPP-VT 77

Query: 687 PLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASF 746
             P  E +     +  +      P P          P P      P K    + + D   
Sbjct: 78  KQPGGEGTEEDHQAPLAADADDDPRPGKRSKADEHGPAPGRAALAPFK---LDLDQDPLH 134

Query: 747 STPSPPASTVTLSTTSSPPTPPPPPKPPLKE-QSAIRAGPPPPPPPP 792
             P PP           PP      +PPL E + A+   PPP PP P
Sbjct: 135 GDPDPPPGATG-GQGEEPPEGGEESQPPLGEGEGAVEGHPPPLPPAP 180

Length = 230

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 46/207 (22%), Positives = 64/207 (30%), Gaps = 32/207 (15%)

Query: 682 PSSATPLPAP--ETSSSGTNSSTSLSTAPLPAPATAKSTFPP--PPPPPPPPTPPLKTPV 737
           P+  T    P  E S+ G+       +AP   PA     F P  P P P     P  TP 
Sbjct: 167 PAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPA---DVFVPATPRPTPRTTASPETTPT 223

Query: 738 FNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGS 797
            +  T    +T   P++T+      + P     P PP        A P    P P  S  
Sbjct: 224 PSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPP--TPGGGEAPPANATPAPEASRY 281

Query: 798 SASST-VSSPTIPLA----------------------PPPPSLSSNSSPVPPPPPIAKVV 834
             + T +    IP +                        P  +    SPV P        
Sbjct: 282 ELTVTQIIQIAIPASIIACVFLGSCACCLHRRCRRRRRRPARIYRPPSPVAPSISAVNEA 341

Query: 835 SKTGVASPVPAPPSISPSSGKGRLSRT 861
           +   +   +   P  SP   K R S+T
Sbjct: 342 ALARLGDELKRHPPESPRRSKRRSSQT 368

Length = 401

>gnl|CDD|221526 pfam12316, Dsh_C, Segment polarity protein dishevelled (Dsh) C terminal

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 6/161 (3%)

Query: 627 PPPPPAPRPSIASSASKVPSPPP---PPQLPPHHFSSSCPAHFPHTKESKSHMQDR-DKP 682
           P P  AP P   +   + P+P P   P    P +   S  A   H++ S+S   +R D  
Sbjct: 26  PHPGAAPWPLGQAFPYQYPAPHPYFPPAYQDPGYSYGSGSAGSQHSEGSRSSGSNRSDGE 85

Query: 683 SSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNT 742
            S           SG + S S  T+   +  +     P     PPP    +++ + + ++
Sbjct: 86  RSRAADGREGGRKSGGSGSESEHTSRSGSRRSGGRRAPSERSGPPPSEGSVRSSLSHPSS 145

Query: 743 DASFSTPSPPASTVTLSTTSSPPTPPPPP--KPPLKEQSAI 781
            +S+  P  P           PP P P P   PP++E +++
Sbjct: 146 HSSYGAPGVPPPYNPPMLMMKPPPPSPGPPGAPPVRELASV 186

This domain family is found in eukaryotes, and is typically between 177 and 207 amino acids in length. The family is found in association with pfam00778, pfam02377, pfam00610, pfam00595. The segment polarity gene dishevelled (dsh) is required for pattern formation of the embryonic segments. It is involved in the determination of body organisation through the Wingless pathway (analogous to the Wnt-1 pathway). Length = 202

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 42.2 bits (98), Expect = 0.001
 Identities = 27/159 (16%), Positives = 52/159 (32%)

Query: 673 KSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPP 732
           ++  +D    ++A    A + +++ +   ++ + AP  A A       PP      P   
Sbjct: 187 RARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKA 246

Query: 733 LKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPP 792
              P       A  + P   A+       + P     PP       +   A P      P
Sbjct: 247 AAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAP 306

Query: 793 LYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIA 831
             + ++ +   + P    APP  + +  +    PP   A
Sbjct: 307 AKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAA 345

Length = 357

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 11/120 (9%)

Query: 745 SFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPP---PPPPPPLYSGSSASS 801
           + +  +   +            P   P        A  A P      P  P  +   A  
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPV 426

Query: 802 TVSSPTIPLAPPPPSLSSNSSPVPPPPPIA--------KVVSKTGVASPVPAPPSISPSS 853
              +   P A P  + ++ +    PP   A        +V  +  VAS  PAP +   ++
Sbjct: 427 AAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAA 486

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.1 bits (99), Expect = 0.002
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 27/131 (20%)

Query: 594 QIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQL 653
           Q+P   A+ +  L      + A   + + SP  P P P+ RP  A++A+ +P   P  + 
Sbjct: 348 QLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAAN-IPPKEPVRET 406

Query: 654 PPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPA 713
                    P                     A P+P    S+        L+ A +P   
Sbjct: 407 ATPPPVPPRPV--------------------APPVPHTPESAP------KLTRAAIPVDE 440

Query: 714 TAKSTFPPPPP 724
             K T P PP 
Sbjct: 441 KPKYTPPAPPK 451

Length = 585

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (99), Expect = 0.002
 Identities = 22/90 (24%), Positives = 32/90 (35%)

Query: 694 SSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPA 753
           S SG+ S+T+ +  P        +  PP P P     PP   P     T AS + P+   
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571

Query: 754 STVTLSTTSSPPTPPPPPKPPLKEQSAIRA 783
           +  +          P P K    E+    A
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDSSPEEIDKAA 601

Length = 620

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.2 bits (100), Expect = 0.002
 Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 8/107 (7%)

Query: 752 PASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLA 811
           PA+ +           P          +A  A P  P  PP      AS+   +P +PL 
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPP----PPASAPQQAPAVPLP 416

Query: 812 PPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRL 858
                L +    +          +K   + P  A  +   +S   RL
Sbjct: 417 ETTSQLLAARQQLQRAQG----ATKAKKSEPAAASRARPVNSALERL 459

Length = 647

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 42.2 bits (100), Expect = 0.002
 Identities = 18/69 (26%), Positives = 29/69 (42%)

Query: 747 STPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSP 806
           ST +P A+    +  +S P   P  K P     A  A   P  PP   + ++A++  ++P
Sbjct: 40  STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAP 99

Query: 807 TIPLAPPPP 815
               A   P
Sbjct: 100 PAAAAAAAP 108

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 42.2 bits (100), Expect = 0.002
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 749 PSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTI 808
           P   A+    +  ++     P   P  K  +A    PP    P     ++     ++   
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAP-----AAPPKPAAAAAA 92

Query: 809 PLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVA 840
             AP  P  ++ ++         +V    G A
Sbjct: 93  AAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAA 124

Length = 1228

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 17/57 (29%), Positives = 22/57 (38%)

Query: 676 MQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPP 732
           +     P   TP  A   + +      + + A  PAPA A       PPP  PP PP
Sbjct: 82  LTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPP 138

Length = 141

>gnl|CDD|144451 pfam00859, CTF_NFI, CTF/NF-I family transcription modulation region

 Score = 41.6 bits (97), Expect = 0.002
 Identities = 44/212 (20%), Positives = 72/212 (33%), Gaps = 27/212 (12%)

Query: 669 TKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLST--APLPAPATAKSTFPPPPPPP 726
           +K  K+   + +  +S        + SS ++SS +       + +P   K        P 
Sbjct: 62  SKRPKTVSMEEEMDTSPGGEDFYTSPSSPSSSSANWHEVEGGMSSPTMKKPDKSLFSSPS 121

Query: 727 PPPTPPLKTPVFNRN----TDASFSTPSPPASTVTLSTTSSPPTPPPP------------ 770
           P  + P  +     +    T  S  + SP  +   L   +SP  P  P            
Sbjct: 122 PQDSSPRLSAFTQHHRPVITGHSGISASPHPTPSPLHFPTSPILPQQPSSYFPHTAIRYP 181

Query: 771 ----PKPPLKE---QSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSP 823
               P+ PLKE        +      P     G   +  + +P +   PPPP       P
Sbjct: 182 PHLHPQDPLKEFVQLVCDPSSQQAGQPNGSGQGKVPNHFLPTPMLAPPPPPPMARPVPLP 241

Query: 824 VP--PPPPIAKVVSKTGVASPVPAPPSISPSS 853
           +P   PP  +     T   SP  + PS SP++
Sbjct: 242 MPDTKPPTTSTEGGATSPTSPTYSTPSTSPAN 273

Length = 295

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 13/82 (15%)

Query: 768 PPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSN------- 820
           PPPP P +  Q       PP  PP      SA ++   PT    PP  +  S+       
Sbjct: 144 PPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPPLKSP 203

Query: 821 ------SSPVPPPPPIAKVVSK 836
                  SP P  PP  KV  K
Sbjct: 204 MAGTFYRSPAPGEPPFVKVGDK 225

Length = 274

>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2); Provisional

 Score = 42.3 bits (99), Expect = 0.002
 Identities = 42/166 (25%), Positives = 53/166 (31%), Gaps = 24/166 (14%)

Query: 720 PPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKP-----P 774
           P P P P PPTP    P   R TD  F+ P+       L    +P  P PPP       P
Sbjct: 288 PLPVPAPVPPTPEDDNP---RPTDDEFAVPNFNEG---LDVPDNPQDPVPPPNEGKDGNP 341

Query: 775 LKEQSAIRAG------PPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPP 828
            +E                PP PP   G S S   S    P  PP P +      +P   
Sbjct: 342 NEENLFPPGDDEVPDESNVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQEPNIPED- 400

Query: 829 PIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSRSHQTKKLKP 874
                 S   V   VP  P     +      +  +    Q + + P
Sbjct: 401 ------SNKEVPEDVPMEPEDDRDNNFNEPKKPENKGDGQNEPVIP 440

Length = 576

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 42.1 bits (99), Expect = 0.002
 Identities = 25/211 (11%), Positives = 46/211 (21%), Gaps = 18/211 (8%)

Query: 669 TKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLST-----APLPAPATAKSTFPPPP 723
            + +     +  + S      A          STS +T        P   T         
Sbjct: 10  GRWNYDSSDESPEGSRDENFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATS 69

Query: 724 PPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRA 783
                P PP          D+  ++   P     +          P           +  
Sbjct: 70  TIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASSPRLGADSTSPRFLY- 128

Query: 784 GPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPV 843
                  P + +    S++ S           S     S  PP   +             
Sbjct: 129 ---QVNFPVILAPIGESNSSS--------EELSEEEEHSRPPPSESLKVKNGGKVYPKGF 177

Query: 844 PAPPSISPSSGKGRLSRTISSRSHQTKKLKP 874
               +    S    L++  + +   +   KP
Sbjct: 178 SKHKT-HKRSEFSGLTKKAARKRKGSFVFKP 207

Length = 580

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 0.003
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 1/98 (1%)

Query: 756 VTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPP 815
           + ++  +  P    P        +A       P      + ++A     +P  P   PP 
Sbjct: 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPA-PAPAPPS 443

Query: 816 SLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSS 853
              +  +   P PP A   S     +P  AP   +  +
Sbjct: 444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPA 481

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.6 bits (98), Expect = 0.003
 Identities = 27/151 (17%), Positives = 43/151 (28%), Gaps = 34/151 (22%)

Query: 630 PPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLP 689
           P A   + A +  K P+ P          + +  A  P               ++A+   
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAP----------AAAASAPA 415

Query: 690 APETSSSGTNSSTSLSTAPLPAPATAKST-----FPPPPPPPPPPTPPLKTPVFNRNTDA 744
           AP  ++     +   + AP  APA A +       PP    P     P++          
Sbjct: 416 APPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRV--------- 466

Query: 745 SFSTPSPPASTVTLSTTSSPPTPPPPPKPPL 775
               P P          S+ P P   P    
Sbjct: 467 ---APEPAV-------ASAAPAPAAAPAAAR 487

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 777 EQSAIRAGPPPPPPPPLYSGSSASSTVSSPTI-PLAPPPPSLSSNSSPVPPPPPIA--KV 833
           E + I A   P P P     ++A+ +   PT  P   P  + ++N  P  P    A    
Sbjct: 352 ELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP 411

Query: 834 VSKTGVASPVPAPPSISPSS 853
           V    VA PVP  P  +P  
Sbjct: 412 VPPRPVAPPVPHTPESAPKL 431

Length = 585

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 42.0 bits (98), Expect = 0.003
 Identities = 47/185 (25%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 650 PPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPL 709
           PP+ P    +S  P   P  KE +    +  K S        E    G      +   P 
Sbjct: 510 PPEGPE---ASGLPPKAPGDKEGEEGEHEDSKESDEPK----EGGKPGETKEGEVGKKPG 562

Query: 710 PAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPP 769
           PA     S  P     P  P  P K P            P  P    +    + P +P  
Sbjct: 563 PAKEHKPSKIPTLSKKPEFPKDP-KHP-------KDPEEPKKPKRPRSAQRPTRPKSPKL 614

Query: 770 P-----PKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPV 824
           P     PK P + +S      PPPP  P     S+      P I  +P PP      SP 
Sbjct: 615 PELLDIPKSPKRPESPKSPKRPPPPQRP-----SSPERPEGPKIIKSPKPP-----KSPK 664

Query: 825 PPPPP 829
           PP  P
Sbjct: 665 PPFDP 669

Length = 943

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 27/97 (27%), Positives = 34/97 (35%), Gaps = 11/97 (11%)

Query: 764 PPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAP-PPPSLSSNSS 822
             T   P +PP     A+RAG    P       S   +TV+ P  P+ P P P       
Sbjct: 58  AATQALPTQPPEGAAEAVRAGDAAAP-------SLDPATVAPPNTPVEPEPAPVEPPKPK 110

Query: 823 PVPPPPPIAKVVSKTGVAS---PVPAPPSISPSSGKG 856
           PV  P P  K   K        P P P     ++  G
Sbjct: 111 PVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAPTG 147

Length = 226

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.8 bits (99), Expect = 0.003
 Identities = 28/148 (18%), Positives = 42/148 (28%), Gaps = 50/148 (33%)

Query: 622 FSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDK 681
           F+   P    AP  + A++A+   +P   P                              
Sbjct: 33  FADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKA-------------------------P 67

Query: 682 PSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFN-- 739
            + A   PA    +            P PA A A +  P  PP       P    V +  
Sbjct: 68  AAPAPAPPAAAAPA----------APPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117

Query: 740 -----------RNTDASFSTPSPPASTV 756
                      +N DAS   P+  A++V
Sbjct: 118 TPLRGAAAAVAKNMDASLEVPT--ATSV 143

Length = 1228

>gnl|CDD|225805 COG3266, DamX, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 38/179 (21%), Positives = 54/179 (30%), Gaps = 37/179 (20%)

Query: 688 LPAPETSSSGTNSSTSLS-----------TAPLPAPATAKSTFPPPPPPPPPPTPP---- 732
           L AP TSSS   +S   S             P P P +A++T      PP   TP     
Sbjct: 31  LKAPSTSSSEAPASAEKSIDLNGATQANAQQPAPGPTSAENTSQDLSLPPISSTPTQGQE 90

Query: 733 ---------------------LKTPVFNRNTDASFST-PSPPASTVTLSTTSSPPTPPPP 770
                                    +   N  A  ST P+ PA+   +   S P    P 
Sbjct: 91  PLAQDGQQRVEVQGDLNNAAVQPQNLSQLNNVAVTSTLPTEPATVAPVRNASVPTAERPA 150

Query: 771 PKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPP 829
              P++ Q+       P       +  +   T S    P  PP    ++ S  +   P 
Sbjct: 151 ITRPVRAQAVSEPAVEPKAAKTATATEAKVQTASPAQTPATPPAGKGAAASGQLKSAPS 209

Length = 292

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 41.3 bits (97), Expect = 0.004
 Identities = 40/200 (20%), Positives = 56/200 (28%), Gaps = 23/200 (11%)

Query: 603 DPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSC 662
           +P+L  +   EA  L      P  P       P + + A+           P    +S  
Sbjct: 760 NPSLVPAKLAEALALLE----PAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRT 815

Query: 663 PAHFPHTKESKSHMQDRDKPSSATPLPAPET-SSSGTNSSTSLSTAPLPAPATAKSTF-- 719
            +     ++S+SH  D    SS    P           SS S  + P  A   A+     
Sbjct: 816 ASK----RKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGR 871

Query: 720 --PPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPP-------- 769
             P PP P   P              A    P P  +         P  P P        
Sbjct: 872 RRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDPRGGFRRVP 931

Query: 770 --PPKPPLKEQSAIRAGPPP 787
                 P    +A+ A  PP
Sbjct: 932 PGDLHTPAPSAAALAAYCPP 951

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 12/116 (10%)

Query: 623 SPTTPP-PPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDK 681
           +P  P    PA  P   ++A+  P+  P                 P    + +       
Sbjct: 380 TPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASA-----------PAAPPAAAPPAPVAA 428

Query: 682 PSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPV 737
           P++A P  AP  + +    + +      P          P P        P   P 
Sbjct: 429 PAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA 484

Length = 618

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.4 bits (98), Expect = 0.004
 Identities = 17/102 (16%), Positives = 28/102 (27%), Gaps = 21/102 (20%)

Query: 746 FSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSS 805
           F+   P ++       ++                A +A   P P PP            +
Sbjct: 33  FADYGPGSTA----APTAAAAAAAAAASAPAAAPAAKAPAAPAPAPP------------A 76

Query: 806 PTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPP 847
              P APP P     ++        A   +    A+P  A  
Sbjct: 77  AAAPAAPPKP-----AAAAAAAAAPAAPPAAAAAAAPAAAAV 113

Length = 1228

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 40.9 bits (95), Expect = 0.004
 Identities = 29/155 (18%), Positives = 48/155 (30%), Gaps = 7/155 (4%)

Query: 670 KESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPP 729
           K+S+  ++  +  + A  +             T    A  P+ A  +S+   P     P 
Sbjct: 266 KQSQHDIEHENLDNRALDIEKATGLKQIDTHGTVPVAAVTPSSAVTQSSAITPSSAAIPS 325

Query: 730 TPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPP 789
              + + V    T  S +T    A  +  S    P     P    L     +   P P  
Sbjct: 326 PAVIPSSV----TTQSATTTQASAVAL-SSAGVLPSDVTLPGTVALPAAEPVNMQPQPMS 380

Query: 790 PPPLYSGSSASSTVSS--PTIPLAPPPPSLSSNSS 822
                  S+ + T ++  PT  L   P S    S 
Sbjct: 381 TTETQQSSTGNITSTANGPTTSLPAAPASNIPVSP 415

Length = 421

>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 38/153 (24%)

Query: 741 NTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSAS 800
           +++    + S P ++V         TP P   P   + SA++A   P PPPP ++    S
Sbjct: 3   SSEEGKPSKSSPKTSV------QEDTPTPTVYP---DWSAMQAYYGPRPPPPYFN----S 49

Query: 801 STVSSPTIPLAPPPPSLSSNSSPVPP----PPPIAKVVSKTGV----------------A 840
           S  SSP      P P +     P+ P    PPP A +    GV                A
Sbjct: 50  SVASSPQ-----PHPYMWGPQQPMMPPYGTPPPYAAMYPPGGVYAHPSMPPGSHPFSPYA 104

Query: 841 SPVPAPPSISPSSGKGRLSRTISSRSHQTKKLK 873
            P    P  +P S +     + +      KK K
Sbjct: 105 MPSAEVPGSTPLSMETDAKSSDNKDKGSIKKSK 137

This region is found to the N-terminus of the pfam00170 transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain), whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C, classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals. Length = 189

>gnl|CDD|236733 PRK10672, PRK10672, rare lipoprotein A; Provisional

 Score = 40.8 bits (96), Expect = 0.004
 Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 13/111 (11%)

Query: 745 SFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVS 804
           S++ P+ P  +  + T S  P P P        Q  +     P     L S     + V+
Sbjct: 191 SYALPARPDLSGGMGTPSVQPAPAP--------QGDVL----PVSNSTLKSEDPTGAPVT 238

Query: 805 SPTIPLAPPP-PSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSG 854
           S     AP          S   P  P +   +    A+P  A  S S S  
Sbjct: 239 SSGFLGAPTTLAPGVLEGSEPTPTAPSSAPATAPAAAAPQAAATSSSASGN 289

Length = 361

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1237
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	100.0
smart00498	432	FH2 Formin Homology 2 Domain. FH proteins control	100.0
PF02181	370	FH2: Formin Homology 2 Domain; InterPro: IPR015425	100.0
KOG2283	434	consensus Clathrin coat dissociation kinase GAK/PT	100.0
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	100.0
KOG1925	817	consensus Rac1 GTPase effector FHOS [Signal transd	100.0
KOG1922	833	consensus Rho GTPase effector BNI1 and related for	100.0
PF10409	134	PTEN_C2: C2 domain of PTEN tumour-suppressor prote	99.94
PTZ00242	166	protein tyrosine phosphatase; Provisional	99.65
PTZ00393	241	protein tyrosine phosphatase; Provisional	99.47
KOG1720	225	consensus Protein tyrosine phosphatase CDC14 [Defe	99.36
PHA03247	3151	large tegument protein UL36; Provisional	99.31
PHA03247	3151	large tegument protein UL36; Provisional	99.24
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	99.21
PF05706	168	CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3)	99.14
smart00195	138	DSPc Dual specificity phosphatase, catalytic domai	99.06
COG2453	180	CDC14 Predicted protein-tyrosine phosphatase [Sign	98.95
PF00782	133	DSPc: Dual specificity phosphatase, catalytic doma	98.9
KOG1719	183	consensus Dual specificity phosphatase [Defense me	98.88
PRK12361	547	hypothetical protein; Provisional	98.84
cd00127	139	DSPc Dual specificity phosphatases (DSP); Ser/Thr	98.81
smart00012	105	PTPc_DSPc Protein tyrosine phosphatase, catalytic	98.64
smart00404	105	PTPc_motif Protein tyrosine phosphatase, catalytic	98.64
KOG2836	173	consensus Protein tyrosine phosphatase IVA1 [Signa	98.4
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	98.1
cd00047	231	PTPc Protein tyrosine phosphatases (PTP) catalyze	98.09
PRK15375	535	pathogenicity island 1 effector protein StpP; Prov	98.02
smart00194	258	PTPc Protein tyrosine phosphatase, catalytic domai	97.82
PF03162	164	Y_phosphatase2: Tyrosine phosphatase family; Inter	97.74
PF00102	235	Y_phosphatase: Protein-tyrosine phosphatase; Inter	97.56
KOG0792	1144	consensus Protein tyrosine phosphatase PTPMEG, con	97.43
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	97.16
KOG2386	393	consensus mRNA capping enzyme, guanylyltransferase	97.12
PHA02747	312	protein tyrosine phosphatase; Provisional	96.94
PF14566	149	PTPlike_phytase: Inositol hexakisphosphate; PDB: 1	96.9
KOG0790	600	consensus Protein tyrosine phosphatase Corkscrew a	96.89
PLN02727	986	NAD kinase	96.87
PHA02742	303	protein tyrosine phosphatase; Provisional	96.83
KOG0791	374	consensus Protein tyrosine phosphatase, contains f	96.69
PHA02746	323	protein tyrosine phosphatase; Provisional	96.61
PHA02740	298	protein tyrosine phosphatase; Provisional	96.57
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	96.44
PHA02738	320	hypothetical protein; Provisional	96.42
KOG1716	285	consensus Dual specificity phosphatase [Defense me	96.29
KOG1922	833	consensus Rho GTPase effector BNI1 and related for	96.26
PF13350	164	Y_phosphatase3: Tyrosine phosphatase family; PDB:	95.98
COG5599	302	PTP2 Protein tyrosine phosphatase [Signal transduc	95.89
KOG1572	249	consensus Predicted protein tyrosine phosphatase [	95.42
KOG1717	343	consensus Dual specificity phosphatase [Defense me	95.4
COG2365	249	Protein tyrosine/serine phosphatase [Signal transd	94.95
smart00498	432	FH2 Formin Homology 2 Domain. FH proteins control	94.57
KOG0789	415	consensus Protein tyrosine phosphatase [Signal tra	93.95
KOG1830	518	consensus Wiskott Aldrich syndrome proteins [Cytos	93.89
KOG1718	198	consensus Dual specificity phosphatase [Defense me	93.77
PF14671	141	DSPn: Dual specificity protein phosphatase, N-term	91.69
KOG4228	1087	consensus Protein tyrosine phosphatase [Signal tra	87.56
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	87.51
KOG0793	1004	consensus Protein tyrosine phosphatase [Signal tra	87.25
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	87.03
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	86.76
KOG1962	216	consensus B-cell receptor-associated protein and r	85.99
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	85.28
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	82.67
PF08580	683	KAR9: Yeast cortical protein KAR9; InterPro: IPR01	82.59
cd07593	215	BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom	80.03

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=100.00  E-value=1.3e-65  Score=595.47  Aligned_cols=364  Identities=22%  Similarity=0.434  Sum_probs=328.1

Q ss_pred             ccccccccccccccccc-c-cccCcccccccccCccccCCCcChhhHHHHHhccCCCCCCCCCCCCCCCC--CCCCCccc
Q 000884          865 RSHQTKKLKPLHWLKLT-R-AVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQRVPR--GPQSDKVQ  940 (1237)
Q Consensus       865 ~~~~k~klK~lhW~kI~-~-~~~~TiW~~l~~~~~~~~~~~iD~~eLE~lF~~~~~~~~~~k~~~~~~s~--~~k~~~i~  940 (1237)
                      .-.++..||+++|.+|. + -.++.+|-.++++..   ...--+.+|+..|+.+..... ...++..++.  ++|.+...
T Consensus       619 ~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~---en~dlfakL~~~Fatq~k~~k-~~e~~eekkt~~kKk~kel~  694 (1102)
T KOG1924|consen  619 VYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKL---ENDDLFAKLALKFATQPKVKK-EQEGGEEKKTGTKKKVKELR  694 (1102)
T ss_pred             cCCCCCccccCCccccCccccCccceeeecchhhc---cchHHHHHHHHHhhccccccc-cccccccccchhhhhhhhhe
Confidence            34678899999999996 3 358999999875421   111126889999998744322 2222222221  34555677


Q ss_pred             ccCcccccccccccccCCCChHHHHHHHhhccCCCCCHHHHHHHHhcCCCHHHHHHHhcccCCccccChhHHHHHHHhcC
Q 000884          941 LIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKV 1020 (1237)
Q Consensus       941 lLD~kRa~Ni~I~L~klk~~~~el~~aIl~lD~~~L~~e~l~~Ll~~~Pt~eE~~~L~~~~~~~~~L~~~EqF~~~l~~v 1020 (1237)
                      +||.|.|||++|+|+.|+|+++||+.+|+++|+++|+...|++|++.+|..|-+..|.+++.+.+.|.+.|||...|..|
T Consensus       695 ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~~v  774 (1102)
T KOG1924|consen  695 ILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVMSQV  774 (1102)
T ss_pred             ecchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhhhhhhhh
Q 000884         1021 PRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDT 1100 (1237)
Q Consensus      1021 p~l~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~dt 1100 (1237)
                      +++.-||.+++||.+|.+.|++|+..+..+..||+|||+|++|.++|++||.+|||||.|+...+|+||.|+.|+||.||
T Consensus       775 krL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dT  854 (1102)
T KOG1924|consen  775 KRLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDT  854 (1102)
T ss_pred             cccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             cccCCccchhHHHHHHHhhcCcccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHH
Q 000884         1101 RARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKIL 1180 (1237)
Q Consensus      1101 Ks~d~k~tLLhylv~~l~~~~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l 1180 (1237)
                      |+.|+|+||||||++++++++|++++|.+||.+|+.|+||+.+.|+..++.+++.+.+++..+.....-+...|.|.++|
T Consensus       855 KsaDqk~TLLHfLae~~e~kypd~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM  934 (1102)
T KOG1924|consen  855 KSADQKTTLLHFLAEICEEKYPDILKFPDDLEHVEKASRVNADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVEKM  934 (1102)
T ss_pred             cccchhhHHHHHHHHHHHHhChhhhcchhhHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999988876655444578999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHh
Q 000884         1181 REFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSA 1232 (1237)
Q Consensus      1181 ~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~ 1232 (1237)
                      +.|.++|.+++..|..+..++++.|++|-+||.-|+++.++|+||.++..|-
T Consensus       935 ~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkysmEEFFaDi~tFr  986 (1102)
T KOG1924|consen  935 TSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYSMEEFFADIRTFR  986 (1102)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998883

>smart00498 FH2 Formin Homology 2 Domain

Probab=100.00  E-value=6.3e-61  Score=572.95  Aligned_cols=362  Identities=31%  Similarity=0.581  Sum_probs=329.3

Q ss_pred             ccccccccccccccccc-cccCcccccccccCccccCCCcChhhHHHHHhccCCCCCCCCCCCCCC--CCCCCCCccccc
Q 000884          866 SHQTKKLKPLHWLKLTR-AVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQRV--PRGPQSDKVQLI  942 (1237)
Q Consensus       866 ~~~k~klK~lhW~kI~~-~~~~TiW~~l~~~~~~~~~~~iD~~eLE~lF~~~~~~~~~~k~~~~~~--s~~~k~~~i~lL  942 (1237)
                      ..|+.+||+|||++|.. ++.+|||++++..      ..+|+++||++|+.+.......+.....+  ...++.+.++||
T Consensus         4 ~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~------~~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~il   77 (432)
T smart00498        4 PKPKKKLKPLHWDKLNPLDPRGTVWDKIDEN------SEGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKIL   77 (432)
T ss_pred             CCCCCCCcCcCceeCCCccccCChhhhcCcc------cccCHHHHHHHhCcCccccCccccccccccccccccccceEee
Confidence            36788999999999974 6889999998743      27899999999998654432111111111  112456779999


Q ss_pred             CcccccccccccccCCCChHHHHHHHhhccCCCCCHHHHHHHHhcCCCHHHHHHHhcccCC-ccccChhHHHHHHHhcCc
Q 000884          943 DHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGD-KEKLGKCEQFFLELMKVP 1021 (1237)
Q Consensus       943 D~kRa~Ni~I~L~klk~~~~el~~aIl~lD~~~L~~e~l~~Ll~~~Pt~eE~~~L~~~~~~-~~~L~~~EqF~~~l~~vp 1021 (1237)
                      |.||+|||+|+|++|+++.++|++||+++|...|+.|.|+.|++++||.||++.|++|.|+ .+.|+++|||+++|++||
T Consensus        78 d~krs~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ip  157 (432)
T smart00498       78 DPKRSQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIP  157 (432)
T ss_pred             chhHHhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999999999999999999987 789999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhhhhhhhhc
Q 000884         1022 RVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTR 1101 (1237)
Q Consensus      1022 ~l~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~dtK 1101 (1237)
                      ++.+||++|+|+.+|.+.+.+|+..|+.+..||++|++|++|+.||++||++|||||+|+.||+|.||+|++|.||.|+|
T Consensus       158 ~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~K  237 (432)
T smart00498      158 YLEERLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVK  237 (432)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccchhHHHHHHHhhcCcccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHH
Q 000884         1102 ARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILR 1181 (1237)
Q Consensus      1102 s~d~k~tLLhylv~~l~~~~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~ 1181 (1237)
                      ++|+++||||||++++.+++|++++|.+||..|+.|++++ +.|.++++++.++++.++.++.........+|.|..+|.
T Consensus       238 s~d~k~tLLhylv~~i~~~~p~~~~f~~el~~v~~askvs-~~l~~~~~~l~~~~~~~e~~~~~l~~~~~~~d~f~~~m~  316 (432)
T smart00498      238 SADNKTTLLHFLVKIIRKKYPDLLDFYSDLHHLDKAKVNL-EQLEKDVKQLERQIKNLETDLGGLSDPENLDDKFIEVMK  316 (432)
T ss_pred             ccCCCccHHHHHHHHHHHhChhhccchhhhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHH
Confidence            9999999999999999999999999999999999999999 999999999999999998766544333344689999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhhc
Q 000884         1182 EFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSADR 1234 (1237)
Q Consensus      1182 ~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~dr 1234 (1237)
                      +|+..|..++..|+..+.++.+.|.+++.|||||++....++||+.|.+|++.
T Consensus       317 ~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~  369 (432)
T smart00498      317 PFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKE  369 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999864

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.

>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []

Probab=100.00  E-value=1.2e-60  Score=562.43  Aligned_cols=364  Identities=38%  Similarity=0.672  Sum_probs=316.7

Q ss_pred             cccccccccccccccccc-cccCcccccccccCccccCCCcChhhHHHHHhccCCCCCCCCCCCCCCCCCCCCCcccccC
Q 000884          865 RSHQTKKLKPLHWLKLTR-AVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQRVPRGPQSDKVQLID  943 (1237)
Q Consensus       865 ~~~~k~klK~lhW~kI~~-~~~~TiW~~l~~~~~~~~~~~iD~~eLE~lF~~~~~~~~~~k~~~~~~s~~~k~~~i~lLD  943 (1237)
                      ...++.+||+|||++|.. ...+|||+++...+.   ...+|+++||++|+.+.......+   .......+++.+++||
T Consensus         4 ~~~p~~k~k~l~W~~i~~~~~~~tiW~~~~~~~~---~~~~d~~~le~~F~~~~~~~~~~~---~~~~~~~~~~~~~iLd   77 (370)
T PF02181_consen    4 KPKPKKKLKPLHWDKIPNSKIKGTIWSKIDEDEF---NIDIDFEELEELFAKKEKEKKSKK---KQASKKKKKKKISILD   77 (370)
T ss_dssp             ----SS-B------EESSGGCTTSCCCCTCCHHH---HCTSHHHHHHHHTBSCECHHHH-------HCCCCTTCCESSS-
T ss_pred             CCCCCCCCcCCCceecCcccccCCccccCccccc---chhhhHHHHHHHhccccccccccc---cccccccccccccccc
Confidence            346789999999999974 788999999875421   127899999999998765533111   0111246777899999


Q ss_pred             cccccccccccccCCCChHHHHHHHhhccCCCCCHHHHHHHHhcCCCHHHHHHHhcccCCccccChhHHHHHHHhcCccH
Q 000884          944 HRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRV 1023 (1237)
Q Consensus       944 ~kRa~Ni~I~L~klk~~~~el~~aIl~lD~~~L~~e~l~~Ll~~~Pt~eE~~~L~~~~~~~~~L~~~EqF~~~l~~vp~l 1023 (1237)
                      .+|++||+|+|++++++.++|+++|++||...|+.|.|+.|++++||.||+++|++|.++.+.|+++|+|+++|++||++
T Consensus        78 ~kr~~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~l~~ip~~  157 (370)
T PF02181_consen   78 PKRSQNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFLLELSKIPRL  157 (370)
T ss_dssp             HHHHHHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHHHHHTTSTTH
T ss_pred             hHHHHHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhhhhhhhhccc
Q 000884         1024 ESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRAR 1103 (1237)
Q Consensus      1024 ~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~dtKs~ 1103 (1237)
                      ++||++|.|+.+|.++++++...|+.+..||++|++|.+|+++|++||++|||||+|+.||+|.||+|++|.||.++|++
T Consensus       158 ~~rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~  237 (370)
T PF02181_consen  158 KERLEALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSN  237 (370)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-S
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccchhHHHHHHHhhcCcccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHH
Q 000884         1104 NNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREF 1183 (1237)
Q Consensus      1104 d~k~tLLhylv~~l~~~~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~F 1183 (1237)
                      |+++||||||++.+.+++|+++.|.+||..|..|+++++++|.+++++|++++++++.++.....+....+.|..+|+.|
T Consensus       238 d~~~tLL~~l~~~~~~~~~~~~~~~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f  317 (370)
T PF02181_consen  238 DNKTTLLHYLVKIVEEKFPDLLDLEDELSSVEKASKVSLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEF  317 (370)
T ss_dssp             TTTSBHHHHHHHHHHTTSGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHH
T ss_pred             cCCchHHHHHHHHHHhcChHHhccHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988777555678999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhhc
Q 000884         1184 LRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSADR 1234 (1237)
Q Consensus      1184 l~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~dr 1234 (1237)
                      ++.++.++..|++.+.++++.+++++.|||||++.+..++||.+|.+|++.
T Consensus       318 ~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~~l~~F~~~  368 (370)
T PF02181_consen  318 LEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEEFFKILSQFIDM  368 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999863

Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.

>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=1.6e-54  Score=505.44  Aligned_cols=303  Identities=24%  Similarity=0.367  Sum_probs=249.0

Q ss_pred             hhhhccCCCCCCeeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCc
Q 000884            4 LRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDI   83 (1237)
Q Consensus         4 ~rr~~~~~~~lDLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~   83 (1237)
                      .||+.+++.||||+|||+|||||  +||++++ |+.|||+++||++||+++|++| |+|||||.|+.|     +..+|++
T Consensus         3 k~r~~~~~~DLDltYIT~rIIam--sfPa~~~-es~yRN~l~dV~~fL~s~H~~~-y~vyNL~~er~y-----d~~~f~g   73 (434)
T KOG2283|consen    3 KRRYNEGGFDLDLTYITSRIIAM--SFPAEGI-ESLYRNNLEDVVLFLDSKHKDH-YKVYNLSSERLY-----DPSRFHG   73 (434)
T ss_pred             cchhhhccccccceeeeeeEEEE--eCCCCcc-hhhhcCCHHHHHHHHhhccCCc-eEEEecCccccC-----Ccccccc
Confidence            48899999999999999999999  6999999 8899999999999999999996 999999965533     4688999


Q ss_pred             eEEeCCCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhch
Q 000884           84 TIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAP  163 (1237)
Q Consensus        84 ~V~~yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~  163 (1237)
                      +|..|+|+|||+|  +|++|+.||++|++||++|++||||||||+||||| |+||||||+|++.+.++++||++|.-++ 
T Consensus        74 ~V~~~~~~Dh~~P--~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrt-g~~icA~L~~~~~~~ta~eald~~~~kR-  149 (434)
T KOG2283|consen   74 RVARFGFDDHNPP--PLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRT-GVMICAYLIYSGISATAEEALDYFNEKR-  149 (434)
T ss_pred             ceeecCCCCCCCC--cHHHHHHHHHCHHHHHhcCccceEEEEccCCCcce-EEEEeHHHHhhhhcCCHHHHHHHHhhhh-
Confidence            9999999999999  99999999999999999999999999999999997 9999999999999999999999985332 


Q ss_pred             hhhhccCCCCCCCchHHHHHHHHHHhhcCCCCCCCCc--eeEEEeEEeeccCCcCC-CCCcceEEEEEecCCCcccCCCC
Q 000884          164 RELLQLLSPLNPVPSQLRYLQYVSRRNVVSEWPPLDR--ALTLDCVILRSIPNFDG-QGGCRPIFRIYGQDPFVANDRSA  240 (1237)
Q Consensus       164 ~~~~~gv~~l~~~PSQ~RYv~Yf~~ll~~~~~~p~~~--~l~L~~I~l~~iP~f~~-~~gcrP~~~Iy~~~~~~~~~~~~  240 (1237)
                        +..+.+.++++|||+|||+||++++.....+++.+  +++|+.++++.||++.. ..||++++.||+..         
T Consensus       150 --~~~~~~~~~~~PSq~RYv~Y~~~~l~~~~~~~~~~~~~~f~~~~~~~~ip~~~~~~~~~~~~~~v~~~k---------  218 (434)
T KOG2283|consen  150 --FDEGKSKGVTIPSQRRYVGYFSRVLLNGPLPPRSNSCPLFLHSFILISIPNFNSSRDGCRPAFPVYQGK---------  218 (434)
T ss_pred             --ccccccCCccCchhhHHHHHHHHHhhcCCcCcccccCceEeeeeeeeecCcccccCCCCCccceeeecc---------
Confidence              33332333499999999999999654444556776  99999999999999544 48999999999864         


Q ss_pred             cEEEeccCCcccceeeccccceEEEecCCccccCCeEEEEEecCCccc-------ccceEEEEEeccccccC--CeEEee
Q 000884          241 KVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLE-------REEMMFRVVFNTAFIRS--NILMLN  311 (1237)
Q Consensus       241 ~~l~st~~~~~~~~~y~~~d~~~i~i~~~~~v~GDV~i~~~h~~~~~~-------~~~~~Fr~~FnT~FI~~--n~l~~~  311 (1237)
                      +.+|+..... .++.|.. + ..|+|++++.++    ++|||.+...+       .+...|.++|+|+++..  ..+.+.
T Consensus       219 ~~~~~~~s~~-~~~~~~~-~-g~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (434)
T KOG2283|consen  219 KKVYSFSSDG-IMRLGEL-D-GKIVIPLGLRVD----VKCYHKRTSSGNRGILKDKEFKGCQIQFYTGPFPEDETVVRFF  291 (434)
T ss_pred             eeeEEeccCC-ccccccc-c-cceecccccccc----eEEEeeccccCCcceeeccccceEEEeccCCCccccceeeecc
Confidence            5678877666 7777776 4 458898888887    89999764332       36678888999988874  455666


Q ss_pred             cccCcccccCCCCCCCCcEEEEEEeec
Q 000884          312 LDEVDILWNAKELFPKEFRAEILFSEM  338 (1237)
Q Consensus       312 k~eLD~~~~~k~~fp~dF~vel~F~~~  338 (1237)
                      ..+++... ....+..-|.+.+.-...
T Consensus       292 ~~~~~~~~-~~e~~~~~~~~~~~~~~~  317 (434)
T KOG2283|consen  292 QADLPIYV-SNEFVFNFFQVSLEVENT  317 (434)
T ss_pred             cccCCccc-cccccccccceeeecccC
Confidence            66666532 234556666666655444

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=100.00  E-value=3.9e-47  Score=446.48  Aligned_cols=361  Identities=29%  Similarity=0.449  Sum_probs=319.4

Q ss_pred             cccccccccccccccccccccc-ccccCcccccccccCccccCCCcChhhHHHHHhcc-CCCCCCCCCCCCCCCCCCCCC
Q 000884          860 RTISSRSHQTKKLKPLHWLKLT-RAVQGSLWAEAQKSGEASKAPEIDMSELENLFSAT-IPNSEKGGKPNQRVPRGPQSD  937 (1237)
Q Consensus       860 ~~~~~~~~~k~klK~lhW~kI~-~~~~~TiW~~l~~~~~~~~~~~iD~~eLE~lF~~~-~~~~~~~k~~~~~~s~~~k~~  937 (1237)
                      .++....+.+.++--++|..+. .++++|+|.++.   |+.+...+|++++|+.|..- .....-.....+.+...+...
T Consensus       359 ~~ik~~~~tk~~~p~lnW~alKP~qv~~tvf~~~~---De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~ka~q  435 (830)
T KOG1923|consen  359 ATIKKPTPTKTKSPSLNWLALKPIQVKGTVFHELN---DEKILEALDFSRFEEQFKILKSNGQILDESSAVSKAMTKAPQ  435 (830)
T ss_pred             HhhcCCCcccccCCCccccccCccccccchhhhhh---HHHHHHhhhHHHHHHHHHhhhcccchhhhHHHHHHHhhhhhh
Confidence            4556667789999999999997 478899999874   55667789999999999872 221110000111111234467


Q ss_pred             cccccCcccccccccccccCCCChHHHHHHHhhccCCCCCHHHHHHHHhcCCCHHHHHHHhcccC---CccccChhHHHH
Q 000884          938 KVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTG---DKEKLGKCEQFF 1014 (1237)
Q Consensus       938 ~i~lLD~kRa~Ni~I~L~klk~~~~el~~aIl~lD~~~L~~e~l~~Ll~~~Pt~eE~~~L~~~~~---~~~~L~~~EqF~ 1014 (1237)
                      +++++|.+|+.|++|.++ +.+..++|+.||..+|-..|..+.+++|.+++||++|.+.+++|.-   ..+.|.+.++|+
T Consensus       436 k~tLle~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFm  514 (830)
T KOG1923|consen  436 KRTLLEQRRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFM  514 (830)
T ss_pred             hhhHHHHHHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhh
Confidence            889999999999999999 9999999999999999999999999999999999999999999864   346899999999


Q ss_pred             HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhh
Q 000884         1015 LELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSL 1094 (1237)
Q Consensus      1015 ~~l~~vp~l~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL 1094 (1237)
                      +.+.+|.|+++||..|.|+.+|.+.+.-+..++..+..|...+++|++||.||++||++|||||.+. ||.++||+|.+|
T Consensus       515 l~lskIErle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~k-Rg~ayGFklqsl  593 (830)
T KOG1923|consen  515 LSLSKIERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSSK-RGAAYGFKLQSL  593 (830)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCcc-cccccceecccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999986 799999999999


Q ss_pred             hhhhhhcccCCccchhHHHHHHHhhcCcccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccch
Q 000884         1095 LKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISE 1174 (1237)
Q Consensus      1095 ~KL~dtKs~d~k~tLLhylv~~l~~~~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d 1174 (1237)
                      .-|.++|++|.++|||||++..++++++++..|.+||.-++.|+.++++.+..||.+|.+|+...++|.+....+     
T Consensus       594 D~ll~tkStDr~~tLlh~iv~~i~eklp~l~~F~~el~~~eKa~av~lesV~~Dv~eL~~g~~l~~kE~e~~~~~-----  668 (830)
T KOG1923|consen  594 DSLLDTKSTDRSMTLLHYIVLTIAEKLPALQLFFSELDFVEKATAVQLESVLADVKELNAGMTLAEKETEREGLD-----  668 (830)
T ss_pred             HHHhhccCCccceeeeehhhHHHHHhhHHHHhhHHHhhccchhhhhhhhccchhHHHHHhHHHHHHHHHhhhccc-----
Confidence            999999999999999999999999999999999999999999999999999999999999999999998765543     


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhh
Q 000884         1175 NFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSAD 1233 (1237)
Q Consensus      1175 ~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~d 1233 (1237)
                         ..|.+|++..+.++++|++.++.+...|+.++.||||.++..+--.||..|..|..
T Consensus       669 ---~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y~Gespk~tppt~ff~~f~~F~~  724 (830)
T KOG1923|consen  669 ---VILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEYFGESPKTTPPTVFFQLFVRFVR  724 (830)
T ss_pred             ---hHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHhhCCCCCCCCCCccHHHHHHHHH
Confidence               78999999999999999999999999999999999999988775556655555543

>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]

Probab=100.00  E-value=4.8e-41  Score=375.52  Aligned_cols=345  Identities=23%  Similarity=0.417  Sum_probs=298.5

Q ss_pred             cccccccccccccccc---------cccCcccccccccCccccCCCcChhhHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 000884          867 HQTKKLKPLHWLKLTR---------AVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQRVPRGPQSD  937 (1237)
Q Consensus       867 ~~k~klK~lhW~kI~~---------~~~~TiW~~l~~~~~~~~~~~iD~~eLE~lF~~~~~~~~~~k~~~~~~s~~~k~~  937 (1237)
                      ..+.++-+|||..++-         ...+|+|+.++.       ..+|...||.||..+..+..-.|+.+.     -+..
T Consensus       279 ~~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~-------~~~D~~r~~~LFEsr~~~~~P~KK~~E-----~r~~  346 (817)
T KOG1925|consen  279 PTKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDP-------VSVDTARLEHLFESRAKEVLPSKKAGE-----GRRT  346 (817)
T ss_pred             cccCceeEEEeecceecCCCCCccccccchhhhccCc-------ceecHHHHHHHHHHhhhhhccchhhcc-----ccee
Confidence            3456677899998751         136899999863       358999999999987765442333221     2345


Q ss_pred             cccccCcccccccccccccCCCChHHHHHHHhhccCCCCCHHHHHHHHhcCCCHHHHHHHhccc--CCccccChhHHHHH
Q 000884          938 KVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYT--GDKEKLGKCEQFFL 1015 (1237)
Q Consensus       938 ~i~lLD~kRa~Ni~I~L~klk~~~~el~~aIl~lD~~~L~~e~l~~Ll~~~Pt~eE~~~L~~~~--~~~~~L~~~EqF~~ 1015 (1237)
                      ..++||.||.|.|.|.|.++. ++..|..||+++|+.+++.|.|+.|++++||+||+++|..-.  +....||.+|||++
T Consensus       347 ~~tVL~~KRt~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLL  425 (817)
T KOG1925|consen  347 MTTVLDPKRTNAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLL  425 (817)
T ss_pred             eeeecCcccccceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHH
Confidence            678999999999999999997 788899999999999999999999999999999999998743  23347999999999


Q ss_pred             HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhhh
Q 000884         1016 ELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLL 1095 (1237)
Q Consensus      1016 ~l~~vp~l~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~ 1095 (1237)
                      .|..|+.+.+||++|.|+.+|++.-.||.+-|-.+..+++++.+++.|+-+|.++|+||||||+.    +++||.|+.|.
T Consensus       426 tLSsI~~L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT----~~KgFeLsYLe  501 (817)
T KOG1925|consen  426 TLSSIGGLAARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGT----QSKGFELSYLE  501 (817)
T ss_pred             HHhhhHHHHHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCc----cccceehHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999975    57899999999


Q ss_pred             hhhhhcccCCccchhHHHHHHHhhcCcccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHH---HhhcccCCCcc
Q 000884         1096 KLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQ---ELSMSENDGAI 1172 (1237)
Q Consensus      1096 KL~dtKs~d~k~tLLhylv~~l~~~~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~---el~~s~~d~~~ 1172 (1237)
                      |..++|+...|.+|||+||..+.+.|+|-.|++.|+-.+...+|||+++|.+.+..|++..+.-=.   .+.+.+    .
T Consensus       502 KvsEVKDtV~KqsLlhHlc~~vVE~FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrCKaSWe~L~~Iakhe----~  577 (817)
T KOG1925|consen  502 KVSEVKDTVRKQSLLHHLCSLVVETFPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRCKASWESLRSIAKHE----L  577 (817)
T ss_pred             hchhhcchHHHHHHHHHHHHHHHHhCCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHhhh----c
Confidence            999999999999999999999999999999999999999999999999999988888776553222   222222    2


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC---CCHHHHHHHHHHHh
Q 000884         1173 SENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPAR---CPFEQAQIGVIRSA 1232 (1237)
Q Consensus      1173 ~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~---~~~e~~~s~l~~F~ 1232 (1237)
                      ....+..|..|++++.++|..|+..|.++.+.|..++.|||..+..   ....+||.++-.|+
T Consensus       578 ~p~l~~r~~~fl~~cA~RI~~LKivhrr~~NRfHSFLLy~Gy~p~aIrev~iN~fc~~~~EFa  640 (817)
T KOG1925|consen  578 APALRARLTHFLDQCARRIAMLKIVHRRVCNRFHSFLLYLGYTPQAIREVRINQFCHTLREFA  640 (817)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcCHHHHHHHHHHHH
Confidence            3567889999999999999999999999999999999999987653   56889999999886

>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]

Probab=100.00  E-value=3.2e-39  Score=416.18  Aligned_cols=363  Identities=37%  Similarity=0.580  Sum_probs=317.3

Q ss_pred             cccccccccccccccc-ccccCcccccccccCccccCCCcCh---hhHHHHHhccCCCCC-CCCCCCCCCCCCCCCCccc
Q 000884          866 SHQTKKLKPLHWLKLT-RAVQGSLWAEAQKSGEASKAPEIDM---SELENLFSATIPNSE-KGGKPNQRVPRGPQSDKVQ  940 (1237)
Q Consensus       866 ~~~k~klK~lhW~kI~-~~~~~TiW~~l~~~~~~~~~~~iD~---~eLE~lF~~~~~~~~-~~k~~~~~~s~~~k~~~i~  940 (1237)
                      ..++.+||++||+++. ......+|.++....     ..+|.   +.+|.+|........ ..+..+....+......+.
T Consensus       390 ~~p~~~lk~l~wdk~~~~~~~~~~w~~~~~~~-----~~~~~~~~~~~e~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (833)
T KOG1922|consen  390 AQPKNKLKPLHWDKTRGSSKRSMVWSEVDSSS-----SLFDPPLSELMEALFGLVKFLPSDNGGDTGREEKTAVEKKRLK  464 (833)
T ss_pred             CCCCCCCCCccccccCCCCccCCCCCccccCC-----cCCCCCcccccccchhhhhcccCCCCCCCcccccccccccccc
Confidence            5678999999999996 467889999987542     23343   888999977643322 1111122221122225688


Q ss_pred             ccCcccccccccccccCCCChHHHHHHHhhccCCCCCHHHHHHHHhcCCCHHHHHHHhcccCCccccChhHHHHHH-Hhc
Q 000884          941 LIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLE-LMK 1019 (1237)
Q Consensus       941 lLD~kRa~Ni~I~L~klk~~~~el~~aIl~lD~~~L~~e~l~~Ll~~~Pt~eE~~~L~~~~~~~~~L~~~EqF~~~-l~~ 1019 (1237)
                      ++|.++++|++|+|..+++..+++..+|+.+|+..+..++|++|.+++|+++|...++.|.++...|+.+|+|+.+ +..
T Consensus       465 v~~~r~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~~~~~~~  544 (833)
T KOG1922|consen  465 VLDPRRPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFFFEELSG  544 (833)
T ss_pred             ccCCCCccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998 567


Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhhhhhhh
Q 000884         1020 VPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTD 1099 (1237)
Q Consensus      1020 vp~l~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~d 1099 (1237)
                      |+.+..|+++++|+..|...+..+...+..+..||++++++.+|.+++++||..||+||.|+.||+|+||+|++|.||.|
T Consensus       545 ip~~~~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d  624 (833)
T KOG1922|consen  545 IPEFEERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSD  624 (833)
T ss_pred             chHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCccchh-HHHHHHHhhcCc---------------ccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000884         1100 TRARNNKMTLM-HYLCKVLADKLP---------------ELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQEL 1163 (1237)
Q Consensus      1100 tKs~d~k~tLL-hylv~~l~~~~p---------------ell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el 1163 (1237)
                      +|+.++++++| |++.++++....               .+.+|.+||..++.|++++++.+.+++.+|.++++++++++
T Consensus       625 ~ks~~~~~~~l~~~~~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~~~l  704 (833)
T KOG1922|consen  625 VKSSDGKTTLLHFVVPEVVRSEGKRSVIDVEKSRRLGLPSLLKFLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVKREL  704 (833)
T ss_pred             hhcccccchhhhhhHHHHHHhhccccchhhhhhhhccchhhhcccchhcccchhhccCHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999996655 556666655543               67899999999999999999999999999999999999999


Q ss_pred             h-cccCC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCCCHHHHHHHHHHHhh
Q 000884         1164 S-MSEND-GAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDP-ARCPFEQAQIGVIRSAD 1233 (1237)
Q Consensus      1164 ~-~s~~d-~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp-~~~~~e~~~s~l~~F~d 1233 (1237)
                      . ++..+ +...+.|.++|.+|+..|+.++..|..++.++...++++++|||+++ ....++++|.++.+|+.
T Consensus       705 ~~~~~~~~~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~f~~~r~fl~  777 (833)
T KOG1922|consen  705 PTASKNESLPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKEEITPEQVFSILRDFLR  777 (833)
T ss_pred             hhhhcCCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHHHHHHH
Confidence            6 66555 55678999999999999999999999999999999999999999999 57889999988888875

>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain

Probab=99.94  E-value=3.9e-26  Score=231.09  Aligned_cols=130  Identities=36%  Similarity=0.651  Sum_probs=108.6

Q ss_pred             CCceeEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccceeeccccceEEEecCCccccCCeE
Q 000884          198 LDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVV  277 (1237)
Q Consensus       198 ~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~~y~~~d~~~i~i~~~~~v~GDV~  277 (1237)
                      +.+++.|++|+|++||.|+.++|||||++||+++         +.+|++...+...+.|.+.. ..|.++.++.|+|||+
T Consensus         2 ~~~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~---------~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~GDV~   71 (134)
T PF10409_consen    2 PPRPLFLKSIILHGIPNFNSGGGCRPYIEIYNGG---------KKVFSTSKSYEDPKSYEQDS-VIIELPKNLPLRGDVL   71 (134)
T ss_dssp             S--EEEEEEEEEES-TTSTTSSCCTEEEEEEETT---------EEEEETCCTCCCCCEEETTC-EEEEEEEEEEEESEEE
T ss_pred             CCeeEEEEEEEEECCCccCCCCCEEEEEEEECCC---------ccEEEeccceecccccccee-EEEEeCCCCeEeCCEE
Confidence            5689999999999999998889999999999975         56777666666666664444 5677887899999999


Q ss_pred             EEEEecCCcccccceEEEEEecccccc--CCeEEeecccCcccccC-CCCCCCCcEEEEEEee
Q 000884          278 LECISLNDDLEREEMMFRVVFNTAFIR--SNILMLNLDEVDILWNA-KELFPKEFRAEILFSE  337 (1237)
Q Consensus       278 i~~~h~~~~~~~~~~~Fr~~FnT~FI~--~n~l~~~k~eLD~~~~~-k~~fp~dF~vel~F~~  337 (1237)
                      |+|||.+.....+++||||||||+||.  ++.|+|+|+|||+++++ .++|++||+|||+|++
T Consensus        72 i~~~~~~~~~~~~~~~f~~~FnT~Fi~~~~~~l~~~k~eLD~~~kdk~k~f~~~f~Vel~f~e  134 (134)
T PF10409_consen   72 IKFYHKRSSSMSKEKMFRFWFNTGFIEPNNNVLRFTKSELDKAHKDKHKRFPPDFKVELVFSE  134 (134)
T ss_dssp             EEEEECETTECCCEEEEEEEEEGGGSBTTTCEEEEEGGGSBTCCCGCTCCS-TT-EEEEEEEE
T ss_pred             EEEEeCCCcccccCeEEEEEEeeeeeeccccEEEcCHHHCCCcccCcccccCCCeEEEEEEeC
Confidence            999999865667889999999999999  99999999999999875 3899999999999986

The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....

>PTZ00242 protein tyrosine phosphatase; Provisional

Probab=99.65  E-value=2.5e-15  Score=157.37  Aligned_cols=151  Identities=13%  Similarity=0.180  Sum_probs=117.4

Q ss_pred             CCCCeeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCC
Q 000884           12 PPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQ   91 (1237)
Q Consensus        12 ~~lDLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~   91 (1237)
                      +|-.++||+.|+|+|.  -|.+..        +.+-++.|+..+=   ..|.|+|++.|+..   .+...+..+.++|+.
T Consensus         7 ~~~~~~~~~~r~~~~~--~P~~~~--------~~~~l~~L~~~gI---~~Iv~l~~~~~~~~---~~~~~gi~~~~~p~~   70 (166)
T PTZ00242          7 KDRQIEYVLFKFLILD--APSPSN--------LPLYIKELQRYNV---THLVRVCGPTYDAE---LLEKNGIEVHDWPFD   70 (166)
T ss_pred             CCcceeeeceEEEEec--CCCccc--------HHHHHHHHHhCCC---eEEEecCCCCCCHH---HHHHCCCEEEecCCC
Confidence            4567999999999995  565542        2233466666543   56999998766432   244568889999999


Q ss_pred             CCCCCcccHHHHHHHHHHHHHHHHc--CCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhhhcc
Q 000884           92 YEGCPLLTMEVIHHFLRSTESWLSL--GQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQL  169 (1237)
Q Consensus        92 d~~~P~p~l~~l~~~~~~~~~wL~~--d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~~~g  169 (1237)
                      |+++|  +.+.+..|++.+++.+..  ..++.|+|||.+|.||+ |+++||||+..+.+ +.++|+.++.++++ .    
T Consensus        71 D~~~P--~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRS-gt~~a~yL~~~~~~-s~~eAi~~vr~~R~-~----  141 (166)
T PTZ00242         71 DGAPP--PKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRA-PILVALALVEYGGM-EPLDAVGFVREKRK-G----  141 (166)
T ss_pred             CCCCC--CHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHCC-C----
Confidence            98887  888899999999998876  67899999999999996 99999999998877 67889999854443 1    


Q ss_pred             CCCCCCCchHHHHHHHHHHhhc
Q 000884          170 LSPLNPVPSQLRYLQYVSRRNV  191 (1237)
Q Consensus       170 v~~l~~~PSQ~RYv~Yf~~ll~  191 (1237)
                        .+  ...|++||+.|.+.+.
T Consensus       142 --~i--~~~Q~~~l~~~~~~~~  159 (166)
T PTZ00242        142 --AI--NQTQLQFLKKYKPRKK  159 (166)
T ss_pred             --Cc--hHHHHHHHHHHHHHhc
Confidence              12  4789999999987554

>PTZ00393 protein tyrosine phosphatase; Provisional

Probab=99.47  E-value=3.9e-13  Score=145.48  Aligned_cols=144  Identities=11%  Similarity=0.165  Sum_probs=106.1

Q ss_pred             eeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCC
Q 000884           16 LLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGC   95 (1237)
Q Consensus        16 LtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~   95 (1237)
                      +.|-.=|+|+|+  -|....    +-    .-+..|+..+-   ..|..+|++.|+..   .+...+..+.++||.|+++
T Consensus        87 ie~~~~rfLi~~--~P~~~~----~~----~yl~eLk~~gV---~~lVrlcE~~Yd~~---~~~~~GI~~~~lpipDg~a  150 (241)
T PTZ00393         87 IEHGKIKILILD--APTNDL----LP----LYIKEMKNYNV---TDLVRTCERTYNDG---EITSAGINVHELIFPDGDA  150 (241)
T ss_pred             hccCceeEEEeC--CCCHHH----HH----HHHHHHHHcCC---CEEEECCCCCCCHH---HHHHcCCeEEEeecCCCCC
Confidence            334445899995  565432    22    22355555543   45888999877522   3456788999999999998


Q ss_pred             CcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhhhccCCCCCC
Q 000884           96 PLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNP  175 (1237)
Q Consensus        96 P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~~~gv~~l~~  175 (1237)
                      |  +.+.|.+|+..++..+..  +..|+|||+||.||| |+|+||||+..|  -+.++|++++...++.       .+  
T Consensus       151 P--s~~~i~~~l~~i~~~l~~--g~~VaVHC~AGlGRT-Gtl~AayLI~~G--mspeeAI~~VR~~RPg-------AI--  214 (241)
T PTZ00393        151 P--TVDIVSNWLTIVNNVIKN--NRAVAVHCVAGLGRA-PVLASIVLIEFG--MDPIDAIVFIRDRRKG-------AI--  214 (241)
T ss_pred             C--CHHHHHHHHHHHHHHHhc--CCeEEEECCCCCCHH-HHHHHHHHHHcC--CCHHHHHHHHHHHCCC-------CC--
Confidence            8  899999999998888754  468999999999996 999999999865  3788899999554431       22  


Q ss_pred             CchHHHHHHHHHHhhc
Q 000884          176 VPSQLRYLQYVSRRNV  191 (1237)
Q Consensus       176 ~PSQ~RYv~Yf~~ll~  191 (1237)
                      ...|++||.-|.....
T Consensus       215 n~~Q~~fL~~y~~~~~  230 (241)
T PTZ00393        215 NKRQLQFLKAYKKKKK  230 (241)
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            3589999998887543

>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]

Probab=99.36  E-value=5.9e-12  Score=131.58  Aligned_cols=157  Identities=13%  Similarity=0.136  Sum_probs=113.3

Q ss_pred             CCCCCeeeeeCc-EEEeeCC-CCCCCcchhhhh-cCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEe
Q 000884           11 KPPDGLLEISER-VYVFNCC-FTTDAWEEEDYK-KYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMD   87 (1237)
Q Consensus        11 ~~~lDLtYIT~R-Iiam~~~-fPa~~~~e~~YR-n~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~   87 (1237)
                      =...|.++|++. +|++... +.+-|+ |..|- +-...+..+|+.+.-   =.|+-|.++-|+..   .+.+-+..-.|
T Consensus        48 ve~gdfnwI~p~~~i~f~~p~~~s~gi-~~~f~~~~~~~~~~~~~~~~v---~s~vrln~~~yd~~---~f~~~Gi~h~~  120 (225)
T KOG1720|consen   48 VENGDFNWIIPDRFIAFAGPHLKSRGI-ESGFPLHLPQPYIQYFKNNNV---TSIVRLNKRLYDAK---RFTDAGIDHHD  120 (225)
T ss_pred             cCCCCcceeccchhhhhcCccccccch-hhcccccCChhHHHHhhhccc---ceEEEcCCCCCChH---HhcccCceeee
Confidence            356899999987 5665210 223355 66666 444455667772221   35777777777632   34556677788


Q ss_pred             CCCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhhh
Q 000884           88 YPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELL  167 (1237)
Q Consensus        88 yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~~  167 (1237)
                      ++|.|..+|  .++.+.+|++.++.-++   ...++|||+||-||| |+||||||||...+ ++.+|++.++..|+ +- 
T Consensus       121 l~f~Dg~tP--~~~~v~~fv~i~e~~~~---~g~iaVHCkaGlGRT-G~liAc~lmy~~g~-ta~eaI~~lR~~Rp-G~-  191 (225)
T KOG1720|consen  121 LFFADGSTP--TDAIVKEFVKIVENAEK---GGKIAVHCKAGLGRT-GTLIACYLMYEYGM-TAGEAIAWLRICRP-GA-  191 (225)
T ss_pred             eecCCCCCC--CHHHHHHHHHHHHHHHh---cCeEEEEeccCCCch-hHHHHHHHHHHhCC-CHHHHHHHHHhcCC-cc-
Confidence            899999998  89999999999999887   478999999999997 99999999999655 55569998844333 22 


Q ss_pred             ccCCCCCCCchHHHHHHHHHHh
Q 000884          168 QLLSPLNPVPSQLRYLQYVSRR  189 (1237)
Q Consensus       168 ~gv~~l~~~PSQ~RYv~Yf~~l  189 (1237)
                           + -.|-|.-|+.-|..+
T Consensus       192 -----V-~gpqQ~~l~~~q~~~  207 (225)
T KOG1720|consen  192 -----V-IGPQQHKLLHKQRDL  207 (225)
T ss_pred             -----c-cCHHHHHHHHHHHHH
Confidence                 2 578899888877763

>PHA03247 large tegument protein UL36; Provisional

Probab=99.31  E-value=1.9e-09  Score=141.99  Aligned_cols=27  Identities=33%  Similarity=0.519  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Q 000884         1045 SSLNVVNSAAEQVRNSAKLRRIMQTILSL 1073 (1237)
Q Consensus      1045 ~~l~~v~~A~~el~~S~~L~~lL~~IL~l 1073 (1237)
                      ..|..+.+||+.|+.  .|+.--.+++..
T Consensus      3109 salAlLi~ACr~i~r--~lr~TR~~L~~~ 3135 (3151)
T PHA03247       3109 SALAVLIEACRRIRR--QLRRTRHALLDR 3135 (3151)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHhh
Confidence            445666667766654  444444444443

>PHA03247 large tegument protein UL36; Provisional

Probab=99.24  E-value=5.5e-09  Score=137.75  Aligned_cols=11  Identities=0%  Similarity=0.072  Sum_probs=5.8

Q ss_pred             ccCCeEEEEEe
Q 000884          272 IQGDVVLECIS  282 (1237)
Q Consensus       272 v~GDV~i~~~h  282 (1237)
                      +.|.+.|.|..
T Consensus      2131 ~~s~l~Vn~L~ 2141 (3151)
T PHA03247       2131 AGSILFVQRLT 2141 (3151)
T ss_pred             hhhhhhheecC
Confidence            45555555553

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=99.21  E-value=9.2e-10  Score=131.42  Aligned_cols=135  Identities=22%  Similarity=0.240  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhhhhhhhh
Q 000884         1027 LRVFSFKIQFHTQVSDLRS------SLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDT 1100 (1237)
Q Consensus      1027 L~~l~fk~~f~~~v~dl~~------~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~dt 1100 (1237)
                      -.+|.|.+.|..++.|.+.      -|..+..-|++     ++.++|...+.+... +.. .|.+|.-|     .|-.  
T Consensus       838 a~afgF~is~L~kL~dTKsaDqk~TLLHfLae~~e~-----kypd~l~F~ddl~hv-~ka-Srvnad~i-----kK~~--  903 (1102)
T KOG1924|consen  838 AQAFGFNISFLCKLRDTKSADQKTTLLHFLAEICEE-----KYPDILKFPDDLEHV-EKA-SRVNADEI-----KKNL--  903 (1102)
T ss_pred             chhhccchHHHHhhccccccchhhHHHHHHHHHHHH-----hChhhhcchhhHHHH-Hhh-ccccHHHH-----HHHH--
Confidence            3577788888887776652      23333333332     566666666554432 211 23333333     2210  


Q ss_pred             cccCCccchhHHHHHHHhh---cCc----ccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccc
Q 000884         1101 RARNNKMTLMHYLCKVLAD---KLP----ELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAIS 1173 (1237)
Q Consensus      1101 Ks~d~k~tLLhylv~~l~~---~~p----ell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~ 1173 (1237)
                             -++..-++.++.   .++    +-..|.+.+..+.+-++-+++.|..--..+++.++.+...+....+.- .-
T Consensus       904 -------~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kky-sm  975 (1102)
T KOG1924|consen  904 -------QQMENQIKKLERDLKNFKIAGNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKY-SM  975 (1102)
T ss_pred             -------HHHHHHHHHHHHHHHhcCCCCcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccC-cH
Confidence                   112222222221   111    223466777777777777888777766777777777766654322211 12


Q ss_pred             hhHHHHHHHH
Q 000884         1174 ENFSKILREF 1183 (1237)
Q Consensus      1174 d~F~~~l~~F 1183 (1237)
                      +.|+.-++.|
T Consensus       976 EEFFaDi~tF  985 (1102)
T KOG1924|consen  976 EEFFADIRTF  985 (1102)
T ss_pred             HHHHHHHHHH
Confidence            4454444444

>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species

Probab=99.14  E-value=1.3e-10  Score=119.25  Aligned_cols=124  Identities=13%  Similarity=0.185  Sum_probs=78.2

Q ss_pred             eCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCc----ch-hhhhccccccCceEEeCCCCCCC
Q 000884           20 SERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEE----TK-SLMANVLSEFDITIMDYPRQYEG   94 (1237)
Q Consensus        20 T~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~----~~-s~~~~~~s~~~~~V~~yP~~d~~   94 (1237)
                      +.++...  ..|+-.+ . .+|.++..=+..|+...-   =.|+-|+++.    |+ ..+...+..+++++.+||+.|.+
T Consensus        40 ~~~Lglt--~~PG~k~-~-d~~RdL~~DL~~Lk~~G~---~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~  112 (168)
T PF05706_consen   40 SGFLGLT--FLPGCKF-K-DWRRDLQADLERLKDWGA---QDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGS  112 (168)
T ss_dssp             SSEEEEE--S-TT-EE-T-TEEB-HHHHHHHHHHTT-----EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS
T ss_pred             cceeeee--cCCCccc-c-cccchHHHHHHHHHHCCC---CEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCC
Confidence            3455443  5787665 3 455555555666776543   3467787665    11 23344556688999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHH
Q 000884           95 CPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTL  155 (1237)
Q Consensus        95 ~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al  155 (1237)
                      +|  .++.+..++..+..+|.++  +.|+|||++|.||| |+|+||+|+..+...+.++|+
T Consensus       113 aP--d~~~~~~i~~eL~~~L~~g--~~V~vHC~GGlGRt-GlvAAcLLl~L~~~~~p~~AI  168 (168)
T PF05706_consen  113 AP--DFAAAWQILEELAARLENG--RKVLVHCRGGLGRT-GLVAACLLLELGDTMSPEQAI  168 (168)
T ss_dssp             -----HHHHHHHHHHHHHHHHTT----EEEE-SSSSSHH-HHHHHHHHHHH-SSS-HHHHH
T ss_pred             CC--CHHHHHHHHHHHHHHHHcC--CEEEEECCCCCCHH-HHHHHHHHHHHcCCCChhhcC
Confidence            98  7898999999999999986  67899999999997 999999999999888888875

The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.

>smart00195 DSPc Dual specificity phosphatase, catalytic domain

Probab=99.06  E-value=2e-09  Score=109.41  Aligned_cols=136  Identities=17%  Similarity=0.179  Sum_probs=92.5

Q ss_pred             eeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCCC
Q 000884           17 LEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCP   96 (1237)
Q Consensus        17 tYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~P   96 (1237)
                      +.|+++|++-  ++|+..-            ..+|....=   -.|.||+++....      ...+.+..++|..|++..
T Consensus         2 ~~I~~~l~~G--~~~~~~~------------~~~l~~~gi---~~Vi~l~~~~~~~------~~~~~~~~~ipi~D~~~~   58 (138)
T smart00195        2 SEILPHLYLG--SYSSALN------------LALLKKLGI---THVINVTNEVPNL------NKKGFTYLGVPILDNTET   58 (138)
T ss_pred             cEEeCCeEEC--ChhHcCC------------HHHHHHcCC---CEEEEccCCCCCC------CCCCCEEEEEECCCCCCC
Confidence            5789998887  5665321            345554422   4699999886421      235667888999885432


Q ss_pred             cccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhhhccCCCCCCC
Q 000884           97 LLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPV  176 (1237)
Q Consensus        97 ~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~~~gv~~l~~~  176 (1237)
                       ...+.+..+++.++....  .+..|+|||++|.+|+ |++++|||++...+ +.++|++++.++++ ..       .+.
T Consensus        59 -~~~~~~~~~~~~i~~~~~--~~~~VlVHC~~G~~RS-~~v~~~yl~~~~~~-~~~~A~~~v~~~R~-~~-------~p~  125 (138)
T smart00195       59 -KISPYFPEAVEFIEDAEK--KGGKVLVHCQAGVSRS-ATLIIAYLMKYRNL-SLNDAYDFVKDRRP-II-------SPN  125 (138)
T ss_pred             -ChHHHHHHHHHHHHHHhc--CCCeEEEECCCCCchH-HHHHHHHHHHHhCC-CHHHHHHHHHHHCC-cc-------CCC
Confidence             133555555555555543  3467999999999995 99999999998877 57779999844332 11       256


Q ss_pred             chHHHHHHHHHH
Q 000884          177 PSQLRYLQYVSR  188 (1237)
Q Consensus       177 PSQ~RYv~Yf~~  188 (1237)
                      +.|++-|.-|++
T Consensus       126 ~~~~~qL~~~e~  137 (138)
T smart00195      126 FGFLRQLIEYER  137 (138)
T ss_pred             HhHHHHHHHHhh
Confidence            788888887764

>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]

Probab=98.95  E-value=3.4e-09  Score=112.96  Aligned_cols=97  Identities=19%  Similarity=0.193  Sum_probs=77.9

Q ss_pred             ccCceEEeCCCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHH
Q 000884           80 EFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIY  159 (1237)
Q Consensus        80 ~~~~~V~~yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~  159 (1237)
                      ..+..+.++|+.|++.|  .++.+.+++..|++-++.+.  .|||||.+|.||| ||++|||||+.+.+...++++.+..
T Consensus        70 ~~~~~~~~~~~~D~~~p--~~~~l~~~v~~i~~~~~~g~--kVvVHC~~GigRS-gtviaA~lm~~~~~~~~~~~i~~~~  144 (180)
T COG2453          70 NDGIQVLHLPILDGTVP--DLEDLDKIVDFIEEALSKGK--KVVVHCQGGIGRS-GTVIAAYLMLYGGLSLADEAIAVKR  144 (180)
T ss_pred             cCCceeeeeeecCCCCC--cHHHHHHHHHHHHHHHhcCC--eEEEEcCCCCchH-HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            34667888999999998  78999999998888887764  8999999999996 9999999999999999998988764


Q ss_pred             HhchhhhhccCCCCCCCchHHHHHHHHHHh
Q 000884          160 RQAPRELLQLLSPLNPVPSQLRYLQYVSRR  189 (1237)
Q Consensus       160 ~~~~~~~~~gv~~l~~~PSQ~RYv~Yf~~l  189 (1237)
                      ++++ +   .+    ....|.+|...+...
T Consensus       145 ~~r~-~---~v----~~~~q~~~~~e~~~~  166 (180)
T COG2453         145 RRRP-G---AV----VTEIQHLFELEQELF  166 (180)
T ss_pred             hcCC-c---cc----ccHHHHHHHHHHHHH
Confidence            4332 1   11    577777777766643

>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=98.90  E-value=3.9e-09  Score=106.47  Aligned_cols=122  Identities=20%  Similarity=0.281  Sum_probs=85.4

Q ss_pred             HHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEec
Q 000884           48 IGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCE  127 (1237)
Q Consensus        48 ~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk  127 (1237)
                      ..+|....=   =.|.|++.+.....   .....+....++|..|+... +..+.+..+++.|+.+...+  ..|+|||.
T Consensus        11 ~~~l~~~~I---~~Vin~~~~~~~~~---~~~~~~~~~~~i~~~D~~~~-~~~~~~~~~~~~i~~~~~~~--~~VlVHC~   81 (133)
T PF00782_consen   11 IAFLKNLGI---THVINLQEECPNPY---FYKPEGIEYLRIPIDDDPEE-PILEHLDQAVEFIENAISEG--GKVLVHCK   81 (133)
T ss_dssp             HHHHHHTTE---EEEEECSSSSSTSH---HHTTTTSEEEEEEEESSTTS-HGGGGHHHHHHHHHHHHHTT--SEEEEEES
T ss_pred             HHHHHHCCC---CEEEEccCCCcCch---hcccCCCEEEEEEecCCCCc-chHHHHHHHHHhhhhhhccc--ceeEEEeC
Confidence            455555532   35889998764311   12345566777887773332 25677777888888876544  67999999


Q ss_pred             cCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhhhccCCCCCCCchHHHHHHHHHH
Q 000884          128 RGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSR  188 (1237)
Q Consensus       128 ~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Yf~~  188 (1237)
                      +|.+|+ |+++|||||+.+.+ +.++|++++..+++ ..       +..+.|+++|.-|++
T Consensus        82 ~G~~RS-~~v~~ayLm~~~~~-~~~~A~~~v~~~rp-~~-------~~~~~~~~~L~~~e~  132 (133)
T PF00782_consen   82 AGLSRS-GAVAAAYLMKKNGM-SLEEAIEYVRSRRP-QI-------NPNPSFIRQLYEYEK  132 (133)
T ss_dssp             SSSSHH-HHHHHHHHHHHHTS-SHHHHHHHHHHHST-TS-------THHHHHHHHHHHHHH
T ss_pred             CCcccc-hHHHHHHHHHHcCC-CHHHHHHHHHHHCC-CC-------CCCHHHHHHHHHhhc
Confidence            999995 99999999998888 77789999854442 21       245679999988774

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....

>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=98.88  E-value=7.7e-09  Score=103.19  Aligned_cols=98  Identities=24%  Similarity=0.441  Sum_probs=78.4

Q ss_pred             cccccCceEEeCCC-CCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHH
Q 000884           77 VLSEFDITIMDYPR-QYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTL  155 (1237)
Q Consensus        77 ~~s~~~~~V~~yP~-~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al  155 (1237)
                      ....+++-.+..|. ++.+.|  +++.|..-++.|++....+  ..|.||||||+|| ++||++||||-.+.++.++ |.
T Consensus        70 ~wk~~giE~L~i~T~D~~~~P--s~~~i~~aVeFi~k~asLG--ktvYVHCKAGRtR-SaTvV~cYLmq~~~wtpe~-A~  143 (183)
T KOG1719|consen   70 LWKNYGIEFLVIPTRDYTGAP--SLENIQKAVEFIHKNASLG--KTVYVHCKAGRTR-SATVVACYLMQHKNWTPEA-AV  143 (183)
T ss_pred             HHHhccceeEEeccccccCCC--CHHHHHHHHHHHHhccccC--CeEEEEecCCCcc-chhhhhhhhhhhcCCCHHH-HH
Confidence            44556665555555 446777  9999999999999999887  4899999999999 6999999999999887665 99


Q ss_pred             HHHHHhchhhhhccCCCCCCCchHHHHHHHHHH
Q 000884          156 DMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSR  188 (1237)
Q Consensus       156 ~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Yf~~  188 (1237)
                      +++.+.+++-+        ..|+|++-|.-|.+
T Consensus       144 ~~vr~iRp~Vl--------L~~~Qw~~l~ef~~  168 (183)
T KOG1719|consen  144 EHVRKIRPRVL--------LRPAQWDVLKEFYK  168 (183)
T ss_pred             HHHHhcCccee--------ecHHHHHHHHHHHH
Confidence            99866554333        58999999885554

>PRK12361 hypothetical protein; Provisional

Probab=98.84  E-value=3.5e-08  Score=122.87  Aligned_cols=143  Identities=19%  Similarity=0.226  Sum_probs=102.8

Q ss_pred             CeeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCC
Q 000884           15 GLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEG   94 (1237)
Q Consensus        15 DLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~   94 (1237)
                      -...|+++|+.-  ++++..=            ..+|++ ++-  =.|.|+++|....  .+.....+....++|..|+.
T Consensus        94 ~~~~I~~~l~lG--~~~~a~d------------~~~L~~-~gI--~~Vldlt~E~~~~--~~~~~~~~i~yl~iPi~D~~  154 (547)
T PRK12361         94 AIQKIDENLYLG--CRLFPAD------------LEKLKS-NKI--TAILDVTAEFDGL--DWSLTEEDIDYLNIPILDHS  154 (547)
T ss_pred             cceEEcCcEEEC--CCCCccc------------HHHHHH-cCC--CEEEEcccccccc--cccccccCceEEEeecCCCC
Confidence            568899999997  5665321            345553 332  2478998763210  00111234567788998987


Q ss_pred             CCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhhhccCCCCC
Q 000884           95 CPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLN  174 (1237)
Q Consensus        95 ~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~~~gv~~l~  174 (1237)
                      .|  .++.+.+.++.|++.++++  .-|+|||++|.+| |+++++||||+.+...+.++|++++.++|+.-        .
T Consensus       155 ~p--~~~~l~~a~~~i~~~~~~~--~~VlVHC~~G~sR-Sa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v--------~  221 (547)
T PRK12361        155 VP--TLAQLNQAINWIHRQVRAN--KSVVVHCALGRGR-SVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTA--------R  221 (547)
T ss_pred             CC--cHHHHHHHHHHHHHHHHCC--CeEEEECCCCCCc-HHHHHHHHHHHhccCCCHHHHHHHHHHHCCCC--------C
Confidence            76  7899999999999988765  4599999999999 59999999999987778889999985444321        2


Q ss_pred             CCchHHHHHHHHHHh
Q 000884          175 PVPSQLRYLQYVSRR  189 (1237)
Q Consensus       175 ~~PSQ~RYv~Yf~~l  189 (1237)
                      ..+.|+|+++.|.+.
T Consensus       222 ~n~~q~~~l~~~~~~  236 (547)
T PRK12361        222 LNKRQLRALEKMLEQ  236 (547)
T ss_pred             CCHHHHHHHHHHHHc
Confidence            567999999987753

>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases

Probab=98.81  E-value=4.3e-08  Score=99.45  Aligned_cols=121  Identities=15%  Similarity=0.109  Sum_probs=83.5

Q ss_pred             eeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCC
Q 000884           16 LLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGC   95 (1237)
Q Consensus        16 LtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~   95 (1237)
                      ++.|+++|++-  ++|+..-            ..+|.+. +-  -.|.||+.+.+.    .....-+..+.+||+.|...
T Consensus         2 ~~~i~~~l~~g--~~~~~~d------------~~~L~~~-gi--~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~   60 (139)
T cd00127           2 LSEITPGLYLG--SYPAASD------------KELLKKL-GI--THVLNVAKEVPN----ENLFLSDFNYLYVPILDLPS   60 (139)
T ss_pred             cCEEcCCeEEC--ChhHhcC------------HHHHHHc-CC--CEEEEcccCCCC----cccCCCCceEEEEEceeCCC
Confidence            67899999886  5665432            3445433 22  469999988753    11234566788899888764


Q ss_pred             CcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhc
Q 000884           96 PLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQA  162 (1237)
Q Consensus        96 P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~  162 (1237)
                      + .....+..+++.++..+..+  .-|+|||.+|.||+ |+|+++||++.+.+ +.++|++++.+.+
T Consensus        61 ~-~~~~~~~~~~~~i~~~~~~~--~~vlVHC~~G~~Rs-~~~~~~~l~~~~~~-~~~~a~~~vr~~r  122 (139)
T cd00127          61 Q-DISKYFDEAVDFIDDAREKG--GKVLVHCLAGVSRS-ATLVIAYLMKTLGL-SLREAYEFVKSRR  122 (139)
T ss_pred             C-ChHHHHHHHHHHHHHHHhcC--CcEEEECCCCCchh-HHHHHHHHHHHcCC-CHHHHHHHHHHHC
Confidence            4 12345556666666655543  57999999999995 99999999998866 6677999985443

Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.

>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity

Probab=98.64  E-value=1.7e-07  Score=89.68  Aligned_cols=89  Identities=18%  Similarity=0.256  Sum_probs=64.5

Q ss_pred             CCCCCCCCCcccHHHHHHHHHHHHHHHHcCC-CcEEEEEeccCCccchhHHHHHHHHHHcCC-----CCHHHHHHHHHHh
Q 000884           88 YPRQYEGCPLLTMEVIHHFLRSTESWLSLGQ-HNVLMMHCERGGWPVLAFMLAALLIYRKQY-----SGEYKTLDMIYRQ  161 (1237)
Q Consensus        88 yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~-~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~-----~~~~~al~~~~~~  161 (1237)
                      ..|.|++.|. ..+.+++|++.+..|..... ++-|+|||.+|.||+ |+++++||++.+..     ....+++..+..+
T Consensus         8 ~~Wpd~~~P~-~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRt-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~   85 (105)
T smart00012        8 TGWPDHGVPE-SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRT-GTFVALDILLQQLESETGEVDIFQTVKELRKQ   85 (105)
T ss_pred             CCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChh-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Confidence            4677888773 33899999999999988643 578899999999996 99999999988753     3445566666433


Q ss_pred             chhhhhccCCCCCCCchHHHHHHHH
Q 000884          162 APRELLQLLSPLNPVPSQLRYLQYV  186 (1237)
Q Consensus       162 ~~~~~~~gv~~l~~~PSQ~RYv~Yf  186 (1237)
                      ++..+        ..+.|.+|++..
T Consensus        86 r~~~~--------~~~~q~~~~~~~  102 (105)
T smart00012       86 RPGMV--------QTFEQYLFLYRA  102 (105)
T ss_pred             hhhhC--------CcHHHHHHHHHH
Confidence            33222        566777776654

Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.

>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif

Probab=98.64  E-value=1.7e-07  Score=89.68  Aligned_cols=89  Identities=18%  Similarity=0.256  Sum_probs=64.5

Q ss_pred             CCCCCCCCCcccHHHHHHHHHHHHHHHHcCC-CcEEEEEeccCCccchhHHHHHHHHHHcCC-----CCHHHHHHHHHHh
Q 000884           88 YPRQYEGCPLLTMEVIHHFLRSTESWLSLGQ-HNVLMMHCERGGWPVLAFMLAALLIYRKQY-----SGEYKTLDMIYRQ  161 (1237)
Q Consensus        88 yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~-~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~-----~~~~~al~~~~~~  161 (1237)
                      ..|.|++.|. ..+.+++|++.+..|..... ++-|+|||.+|.||+ |+++++||++.+..     ....+++..+..+
T Consensus         8 ~~Wpd~~~P~-~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRt-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~   85 (105)
T smart00404        8 TGWPDHGVPE-SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRT-GTFVALDILLQQLESETGEVDIFQTVKELRKQ   85 (105)
T ss_pred             CCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChh-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Confidence            4677888773 33899999999999988643 578899999999996 99999999988753     3445566666433


Q ss_pred             chhhhhccCCCCCCCchHHHHHHHH
Q 000884          162 APRELLQLLSPLNPVPSQLRYLQYV  186 (1237)
Q Consensus       162 ~~~~~~~gv~~l~~~PSQ~RYv~Yf  186 (1237)
                      ++..+        ..+.|.+|++..
T Consensus        86 r~~~~--------~~~~q~~~~~~~  102 (105)
T smart00404       86 RPGMV--------QTFEQYLFLYRA  102 (105)
T ss_pred             hhhhC--------CcHHHHHHHHHH
Confidence            33222        566777776654

>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]

Probab=98.40  E-value=7.4e-06  Score=80.16  Aligned_cols=148  Identities=20%  Similarity=0.224  Sum_probs=98.6

Q ss_pred             CCCCCCeeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCC
Q 000884           10 RKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYP   89 (1237)
Q Consensus        10 ~~~~lDLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP   89 (1237)
                      |-.+..++|=-=|-++.+  =|++..    ...+|+++     ++|+-  -.|...|+-.|+..   .+.+-++.|.|++
T Consensus         6 rPAPveIsy~~MrFLITh--nPtnaT----ln~fieEL-----kKygv--ttvVRVCe~TYdt~---~lek~GI~Vldw~   69 (173)
T KOG2836|consen    6 RPAPVEISYKNMRFLITH--NPTNAT----LNKFIEEL-----KKYGV--TTVVRVCEPTYDTT---PLEKEGITVLDWP   69 (173)
T ss_pred             CCCCeeeeccceEEEEec--CCCchh----HHHHHHHH-----HhcCC--eEEEEecccccCCc---hhhhcCceEeecc
Confidence            455666777766766663  455432    23334443     23442  67889999988743   4667889999999


Q ss_pred             CCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhhhcc
Q 000884           90 RQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQL  169 (1237)
Q Consensus        90 ~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~~~g  169 (1237)
                      |+|...|  +-+.+-....-+..-+.+.++-.|+|||-||-||. -+++|--|+-+|+  .-++|++|+..+++..+   
T Consensus        70 f~dg~pp--p~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgra-pvlvalalie~gm--kyedave~ir~krrga~---  141 (173)
T KOG2836|consen   70 FDDGAPP--PNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRA-PVLVALALIEAGM--KYEDAVEMIRQKRRGAI---  141 (173)
T ss_pred             cccCCCC--chHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcc-hHHHHHHHHHccc--cHHHHHHHHHHHhhccc---
Confidence            9997766  33333333333333345689999999999999996 8888888887774  24779999854444222   


Q ss_pred             CCCCCCCchHHHHHHHHH
Q 000884          170 LSPLNPVPSQLRYLQYVS  187 (1237)
Q Consensus       170 v~~l~~~PSQ~RYv~Yf~  187 (1237)
                            .--|+.||.-|.
T Consensus       142 ------n~kql~~lekyr  153 (173)
T KOG2836|consen  142 ------NSKQLLYLEKYR  153 (173)
T ss_pred             ------cHHHHHHHHHhC
Confidence                  446888887554

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=98.10  E-value=6.1e-05  Score=87.90  Aligned_cols=9  Identities=11%  Similarity=0.113  Sum_probs=4.1

Q ss_pred             hHHHHHHHH
Q 000884          135 AFMLAALLI  143 (1237)
Q Consensus       135 g~~ia~yL~  143 (1237)
                      -.++.+.||
T Consensus        13 ~~n~~S~lL   21 (569)
T KOG3671|consen   13 PPNVPSTLL   21 (569)
T ss_pred             CCCCccccc
Confidence            344444444

>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways

Probab=98.09  E-value=1.1e-05  Score=89.30  Aligned_cols=92  Identities=15%  Similarity=0.261  Sum_probs=67.4

Q ss_pred             EEeC-CCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHc----CCCCHHHHHHHHH
Q 000884           85 IMDY-PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRK----QYSGEYKTLDMIY  159 (1237)
Q Consensus        85 V~~y-P~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~----~~~~~~~al~~~~  159 (1237)
                      +.+| .|.|++.|. ..+.++.|++.++.+...+..+-++|||.+|.||+ |++++++++...    ..-+..+++..+.
T Consensus       132 ~~~~~~W~d~~~p~-~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRs-g~~~a~~~~~~~~~~~~~~~~~~~v~~iR  209 (231)
T cd00047         132 HFQYTGWPDHGVPE-SPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRT-GTFIAIDILLQRLEAEGVVDIFQTVKELR  209 (231)
T ss_pred             EEeECCCCCCCccC-ChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCcc-chHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            4444 377888873 44788999999998876455678999999999996 999999987665    2445666777774


Q ss_pred             HhchhhhhccCCCCCCCchHHHHHHHH
Q 000884          160 RQAPRELLQLLSPLNPVPSQLRYLQYV  186 (1237)
Q Consensus       160 ~~~~~~~~~gv~~l~~~PSQ~RYv~Yf  186 (1237)
                      .+++ +   .+    ..+.|.+|++..
T Consensus       210 ~~R~-~---~v----~~~~Qy~f~~~~  228 (231)
T cd00047         210 SQRP-G---MV----QTEEQYIFLYRA  228 (231)
T ss_pred             hccc-c---cc----CCHHHHHHHHHH
Confidence            4433 1   12    678999998864

The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.

>PRK15375 pathogenicity island 1 effector protein StpP; Provisional

Probab=98.02  E-value=1.5e-05  Score=94.85  Aligned_cols=96  Identities=16%  Similarity=0.121  Sum_probs=63.7

Q ss_pred             ceEEeC-CCCCCCCCcccHHHHHHHHHHHHHHHHcC-------CCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHH
Q 000884           83 ITIMDY-PRQYEGCPLLTMEVIHHFLRSTESWLSLG-------QHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKT  154 (1237)
Q Consensus        83 ~~V~~y-P~~d~~~P~p~l~~l~~~~~~~~~wL~~d-------~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~a  154 (1237)
                      .++++| -|.|||.|. .-+.|..|.+.++.|-..+       .+...||||.||-||| |++|||+++......+.+++
T Consensus       423 V~QFHyTnWPDHGVPp-ST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRT-GTFIAi~llk~~~~~sle~I  500 (535)
T PRK15375        423 IPVLHVKNWPDHQPLP-STDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRT-GTMAAALVLKDNPHSNLEQV  500 (535)
T ss_pred             EEEEEeCCCCCCCCCC-ChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchH-HHHHHHHHHhccccCCHHHH
Confidence            345565 678999873 3466888888888773222       1123589999999997 99999999876556677777


Q ss_pred             HHHHHHhchhhhhccCCCCCCCchHHHHHHHHH
Q 000884          155 LDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVS  187 (1237)
Q Consensus       155 l~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Yf~  187 (1237)
                      +..++.+|...+   |    ...-|.-.+.-..
T Consensus       501 V~dlR~qRng~M---V----Qt~eQy~~l~~~~  526 (535)
T PRK15375        501 RADFRNSRNNRM---L----EDASQFVQLKAMQ  526 (535)
T ss_pred             HHHHHhcCCccc---c----ccHHHHHHHHHHH
Confidence            777744433212   2    4666655554433

>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain

Probab=97.82  E-value=5.4e-05  Score=85.44  Aligned_cols=86  Identities=15%  Similarity=0.249  Sum_probs=63.6

Q ss_pred             CCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHc----CCCCHHHHHHHHHHhchh
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRK----QYSGEYKTLDMIYRQAPR  164 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~----~~~~~~~al~~~~~~~~~  164 (1237)
                      .|.|++.| ...+.+++|++.++.+... ..+-++|||.+|.||+ |+++|+++++..    ..-...+++..+.++|+.
T Consensus       165 ~W~d~~~P-~~~~~~~~~i~~v~~~~~~-~~~pivVHC~~G~gRs-g~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~  241 (258)
T smart00194      165 NWPDHGVP-ESPKSILDLVRAVRKSQST-STGPIVVHCSAGVGRT-GTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPG  241 (258)
T ss_pred             CCCCCCCC-CCHHHHHHHHHHHHHhhcc-CCCCEEEEeCCCCCcc-chhhHHHHHHHHHHHcCCCCHHHHHHHHHhcccc
Confidence            56788887 3557889999999998664 2567999999999996 999999887653    234456677776444432


Q ss_pred             hhhccCCCCCCCchHHHHHHH
Q 000884          165 ELLQLLSPLNPVPSQLRYLQY  185 (1237)
Q Consensus       165 ~~~~gv~~l~~~PSQ~RYv~Y  185 (1237)
                          .+    ..+-|.+|++.
T Consensus       242 ----~v----~~~~Qy~f~~~  254 (258)
T smart00194      242 ----MV----QTEEQYIFLYR  254 (258)
T ss_pred             ----cc----CCHHHHHHHHH
Confidence                22    68889888874

>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=97.74  E-value=6.4e-05  Score=79.00  Aligned_cols=124  Identities=15%  Similarity=0.190  Sum_probs=63.2

Q ss_pred             HHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCCC--cccHHHHHHHHHHHHHHHHcCCCcEEE
Q 000884           46 GIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCP--LLTMEVIHHFLRSTESWLSLGQHNVLM  123 (1237)
Q Consensus        46 ~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~P--~p~l~~l~~~~~~~~~wL~~d~~NVvv  123 (1237)
                      .-..||++.+=.   -|.||+.+.+..+...-+.+.+.+..+++......+  ...-+.+.++++.|   |+ ..+.=|+
T Consensus        23 ~n~~fL~~L~LK---TII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~i---ld-~~n~PvL   95 (164)
T PF03162_consen   23 ANFPFLERLGLK---TIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEII---LD-PRNYPVL   95 (164)
T ss_dssp             HHHHHHHHHT-S---EEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHH---H--GGG-SEE
T ss_pred             hhHHHHHHCCCc---eEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHH---hC-CCCCCEE
Confidence            346788886544   488999986543433334567888888876544331  12345555555443   22 3456799


Q ss_pred             EEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhhhccCCCCCCCchHHHHHHHHHH
Q 000884          124 MHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSR  188 (1237)
Q Consensus       124 vHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Yf~~  188 (1237)
                      |||+.|+.|| |+||+||=.+.+ |+ ...+++-|.+++..+         ..-.-.+||..|..
T Consensus        96 iHC~~G~~rT-G~vvg~lRk~Q~-W~-~~~i~~Ey~~f~~~~---------~~~~~~~fIe~f~~  148 (164)
T PF03162_consen   96 IHCNHGKDRT-GLVVGCLRKLQG-WS-LSSIFDEYRRFAGPK---------IRYLDEQFIELFDV  148 (164)
T ss_dssp             EE-SSSSSHH-HHHHHHHHHHTT-B--HHHHHHHHHHHHGGG-----------HHHHHHHHT---
T ss_pred             EEeCCCCcch-hhHHHHHHHHcC-CC-HHHHHHHHHHhcCCC---------CcHHHHHHHHhcCc
Confidence            9999999997 999999965443 44 334777764444321         23455678887774

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.

>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=97.56  E-value=0.00012  Score=80.57  Aligned_cols=92  Identities=17%  Similarity=0.287  Sum_probs=67.7

Q ss_pred             eEEeC-CCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCC----CCHHHHHHHH
Q 000884           84 TIMDY-PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQY----SGEYKTLDMI  158 (1237)
Q Consensus        84 ~V~~y-P~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~----~~~~~al~~~  158 (1237)
                      .+.+| .|.+++.| ...+.++.|++.+..|. .+.++-++|||.+|.||+ |+++++.++.....    -+..+++..+
T Consensus       136 ~~~~~~~W~~~~~P-~~~~~~~~~~~~v~~~~-~~~~~pivVhc~~G~gRs-g~f~~~~~~~~~~~~~~~~~v~~~~~~l  212 (235)
T PF00102_consen  136 THFHYTNWPDDGVP-PSPESFLDFIRKVNKSK-DDPNGPIVVHCSDGVGRS-GTFCAIDILIEQLKKEGEVDVFEIVKKL  212 (235)
T ss_dssp             EEEEEESSSSSSSG-SSSHHHHHHHHHHHHHH-STTSSEEEEESSSSSHHH-HHHHHHHHHHHHHHHHSEECHHHHHHHH
T ss_pred             cceeeeeccccccc-cccchhhhhhhhccccc-cCCccceEeecccccccc-cccccchhhccccccccchhhHHHHHHH
Confidence            34444 67788876 46788999999999998 677899999999999996 99999998877643    3455566665


Q ss_pred             HHhchhhhhccCCCCCCCchHHHHHHHH
Q 000884          159 YRQAPRELLQLLSPLNPVPSQLRYLQYV  186 (1237)
Q Consensus       159 ~~~~~~~~~~gv~~l~~~PSQ~RYv~Yf  186 (1237)
                      ++++. +   .+    ..+.|.+|++..
T Consensus       213 R~~R~-~---~i----~~~~qy~f~~~~  232 (235)
T PF00102_consen  213 RQQRP-G---AI----QSPEQYRFCYMA  232 (235)
T ss_dssp             HTTST-T---SS----SSHHHHHHHHHH
T ss_pred             HhhCC-C---cc----CCHHHHHHHHHH
Confidence            33332 1   22    677888887764

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....

>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]

Probab=97.43  E-value=0.00032  Score=88.69  Aligned_cols=89  Identities=15%  Similarity=0.164  Sum_probs=57.5

Q ss_pred             CCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcC-CCCHHHHHHHHHHhchhhhh
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQ-YSGEYKTLDMIYRQAPRELL  167 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~-~~~~~~al~~~~~~~~~~~~  167 (1237)
                      -|.||||| -.....+.|+..|.+- ..+.+--|+|||.||.||| |++|++=++.+-. ..-.-+.++++...|-.+. 
T Consensus      1035 aWPDHg~P-~D~~~FL~Fleevrsv-R~~t~pPilvHCSAGiGRT-GVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~- 1110 (1144)
T KOG0792|consen 1035 AWPDHGVP-DDPNDFLDFLEEVRSV-RRGTNPPILVHCSAGIGRT-GVLILMETALCLLEHNEPVDILDIVRTMRDQRA- 1110 (1144)
T ss_pred             ccccCCCC-CChHHHHHHHHHHHHH-hccCCCCeEEEccCCCCcc-eehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-
Confidence            56799999 3567777888777663 3343448999999999997 9999886554443 3333345665521111111 


Q ss_pred             ccCCCCCCCchHHHHHHH
Q 000884          168 QLLSPLNPVPSQLRYLQY  185 (1237)
Q Consensus       168 ~gv~~l~~~PSQ~RYv~Y  185 (1237)
                          .++.+++|-+||+-
T Consensus      1111 ----~mVQT~~QYkFVye 1124 (1144)
T KOG0792|consen 1111 ----MMVQTLSQYKFVYE 1124 (1144)
T ss_pred             ----hhccchHHhhHHHH
Confidence                12268899999874

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=97.16  E-value=0.0038  Score=76.89  Aligned_cols=162  Identities=22%  Similarity=0.250  Sum_probs=84.7

Q ss_pred             ccChhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCC
Q 000884         1006 KLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRS---SLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTA 1082 (1237)
Q Consensus      1006 ~L~~~EqF~~~l~~vp~l~~RL~~l~fk~~f~~~v~dl~~---~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~ 1082 (1237)
                      .|...++.++.+..|....-|..++.|+..-.+.+.+.+.   .+..+.-+...+++  +|..    +..+++-|-+-  
T Consensus       562 ~lr~VleiILA~gNymns~kRg~ayGFklqslD~ll~tkStDr~~tLlh~iv~~i~e--klp~----l~~F~~el~~~--  633 (830)
T KOG1923|consen  562 KLRPVLEIILAFGNYMNSSKRGAAYGFKLQSLDSLLDTKSTDRSMTLLHYIVLTIAE--KLPA----LQLFFSELDFV--  633 (830)
T ss_pred             HHHHHHHHHHHhhccCCCcccccccceeccccHHHhhccCCccceeeeehhhHHHHH--hhHH----HHhhHHHhhcc--
Confidence            4666777777888888888888888888776666655543   22233333333322  2221    12222222221  


Q ss_pred             ccccccccchhhhhhhhhcccCCccchhHHHHHHHhhcCcccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000884         1083 RGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQE 1162 (1237)
Q Consensus      1083 rg~A~GFkL~sL~KL~dtKs~d~k~tLLhylv~~l~~~~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~e 1162 (1237)
                       .-|....|++.  +.|+|.-+.+++|..-   ....   ++.+  .-|..+.+..+--++.|.++++.+...++.+...
T Consensus       634 -eKa~av~lesV--~~Dv~eL~~g~~l~~k---E~e~---~~~~--~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y  702 (830)
T KOG1923|consen  634 -EKATAVQLESV--LADVKELNAGMTLAEK---ETER---EGLD--VILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEY  702 (830)
T ss_pred             -chhhhhhhhcc--chhHHHHHhHHHHHHH---HHhh---hccc--hHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHh
Confidence             12334445543  3455555555444322   1111   1111  1123333444556778888888888888888888


Q ss_pred             hhcccCCCccchhHHHHHHHHHHHH
Q 000884         1163 LSMSENDGAISENFSKILREFLRFA 1187 (1237)
Q Consensus      1163 l~~s~~d~~~~d~F~~~l~~Fl~~a 1187 (1237)
                      +..+...-+. ..|...+..|+...
T Consensus       703 ~Gespk~tpp-t~ff~~f~~F~~~~  726 (830)
T KOG1923|consen  703 FGESPKTTPP-TVFFQLFVRFVRAY  726 (830)
T ss_pred             hCCCCCCCCC-CccHHHHHHHHHHH
Confidence            8765432221 24555555565543

>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]

Probab=97.12  E-value=0.001  Score=77.78  Aligned_cols=142  Identities=13%  Similarity=0.222  Sum_probs=91.9

Q ss_pred             CCeeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEE---EEcCCCc-chhhhhccccccCceEEeCC
Q 000884           14 DGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLV---FNFREEE-TKSLMANVLSEFDITIMDYP   89 (1237)
Q Consensus        14 lDLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V---~Nl~~~~-~~s~~~~~~s~~~~~V~~yP   89 (1237)
                      +|.-.|-.++.-- ..|..... ...+|-.-.++..+|.++    +|+|   ..|..-. |+  ....+.+.+..-..--
T Consensus        22 ~~~rfi~~K~pL~-~~~~~k~~-~~~~~f~~~dl~~~l~~~----~~~vgl~iDltnt~ryy--~~~~~~~~g~~Y~K~~   93 (393)
T KOG2386|consen   22 DDTRFIPFKTPLN-SSYSTKTF-PGSQRFQPKDLFELLKEH----NYKVGLKIDLTNTLRYY--DKPELEERGVKYLKRN   93 (393)
T ss_pred             ccceEEEEecccC-CCCCcCCC-CCccccCHHHHHHHHHhc----CceEEEEEeccceeeee--ccccccccceeEEEec
Confidence            3444444444322 26776666 455588889999998876    3444   3443222 22  0111111111111112


Q ss_pred             CCCCCCCcccHHHHHHHHHHHHHHHH--cCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhh
Q 000884           90 RQYEGCPLLTMEVIHHFLRSTESWLS--LGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPREL  166 (1237)
Q Consensus        90 ~~d~~~P~p~l~~l~~~~~~~~~wL~--~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~  166 (1237)
                      +..|+. .|..+.+..|.+.++.+..  .++..+|.|||-.|+-|| |+|||+||+-.+.+ +..+|+.+|...++.++
T Consensus        94 c~g~~~-vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~Nrt-gyLI~~yL~~~~~~-s~~~aik~f~~~r~~gi  169 (393)
T KOG2386|consen   94 CPGRGV-VPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRT-GYLICAYLADVGGY-SSSEAIKRFADARPPGI  169 (393)
T ss_pred             cCCccc-CCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCccccc-ceeeeeeeeeccCc-cHHHHHHHHHHhCCCcc
Confidence            233442 2388999999999999999  789999999999999997 99999999999985 45559999966555444

>PHA02747 protein tyrosine phosphatase; Provisional

Probab=96.94  E-value=0.0035  Score=72.85  Aligned_cols=89  Identities=12%  Similarity=0.073  Sum_probs=55.7

Q ss_pred             EEeC---CCCCCCCCcccHHHHHHHHHHHHHHHHcCC---------CcEEEEEeccCCccchhHHHHHHHHHHcC----C
Q 000884           85 IMDY---PRQYEGCPLLTMEVIHHFLRSTESWLSLGQ---------HNVLMMHCERGGWPVLAFMLAALLIYRKQ----Y  148 (1237)
Q Consensus        85 V~~y---P~~d~~~P~p~l~~l~~~~~~~~~wL~~d~---------~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~----~  148 (1237)
                      |.+|   -|.||+.|. ....++.|++.+..|-..-.         ..=+||||.+|-||| |+.||.-++....    .
T Consensus       184 V~h~~y~~Wpd~~~P~-~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRt-Gtfcaidi~i~~l~~~~~  261 (312)
T PHA02747        184 ISHFQCSEWFEDETPS-DHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKT-GIFCAVDICLNQLVKRKA  261 (312)
T ss_pred             EEEEEECCCCCCCCCC-ChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcch-hHHHHHHHHHHHHHhcCC
Confidence            5554   778888873 45566778777766643211         135999999999997 9988876554332    2


Q ss_pred             CCHHHHHHHHHHhchhhhhccCCCCCCCchHHHHH
Q 000884          149 SGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYL  183 (1237)
Q Consensus       149 ~~~~~al~~~~~~~~~~~~~gv~~l~~~PSQ~RYv  183 (1237)
                      -...+++..++++|+ .   .|    ...-|-.|+
T Consensus       262 v~v~~~V~~lR~qR~-~---~V----qt~~QY~F~  288 (312)
T PHA02747        262 ICLAKTAEKIREQRH-A---GI----MNFDDYLFI  288 (312)
T ss_pred             CCHHHHHHHHHhccc-c---cc----CCHHHHHHH
Confidence            223345555433332 1   12    577888888

>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B

Probab=96.90  E-value=0.00096  Score=69.15  Aligned_cols=60  Identities=23%  Similarity=0.303  Sum_probs=37.4

Q ss_pred             cccCceEEeCCCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHH
Q 000884           79 SEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLI  143 (1237)
Q Consensus        79 s~~~~~V~~yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~  143 (1237)
                      ..++....+.|..||.+|  .-+.+-.|+..+.++   ..+-.+++||++|+|||+-+|+.+.|+
T Consensus        89 ~~~g~~Y~Ripitd~~~P--~~~~iD~fi~~v~~~---p~~~~l~fhC~~G~GRTTt~Mv~~~li  148 (149)
T PF14566_consen   89 EGNGLRYYRIPITDHQAP--DPEDIDAFINFVKSL---PKDTWLHFHCQAGRGRTTTFMVMYDLI  148 (149)
T ss_dssp             HHTT-EEEEEEE-TTS-----HHHHHHHHHHHHTS----TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred             hcCCceEEEEeCCCcCCC--CHHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            346777888899999998  445555555555444   346889999999999996666655554

...

>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]

Probab=96.89  E-value=0.00071  Score=78.21  Aligned_cols=117  Identities=18%  Similarity=0.240  Sum_probs=70.9

Q ss_pred             hCCCCcEEEEEcCCCcc-hhhhhccccccCc----------eEEeC---CCCCCCCCcccHHHHHHHHHHHHHHHHc-CC
Q 000884           54 HSPDSQFLVFNFREEET-KSLMANVLSEFDI----------TIMDY---PRQYEGCPLLTMEVIHHFLRSTESWLSL-GQ  118 (1237)
Q Consensus        54 ~h~~~~y~V~Nl~~~~~-~s~~~~~~s~~~~----------~V~~y---P~~d~~~P~p~l~~l~~~~~~~~~wL~~-d~  118 (1237)
                      .|+.  +.|-|..++.. ++    .+.+|..          .|.+|   -|.|||+|.-| .-+++|+.+++.--.. -.
T Consensus       378 ~~G~--~~v~~v~E~~t~dY----~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dP-g~vLnFLe~V~~rq~~l~~  450 (600)
T KOG0790|consen  378 EYGV--MRVRNVKESDTHDY----TLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDP-GGVLNFLEEVNHRQESLMD  450 (600)
T ss_pred             hcCc--eEEEeccccccccc----eehheeeccccCCcchhhhhhhheeecccCCCcCCc-cHHHHHHHHhhhhhccccc
Confidence            4553  89999888652 11    1222211          13332   56799999543 6678899888543111 01


Q ss_pred             CcEEEEEeccCCccchhHHHHHHHHHHc----CC---CCHHHHHHHHHHhchhhhhccCCCCCCCchHHHHHHHH
Q 000884          119 HNVLMMHCERGGWPVLAFMLAALLIYRK----QY---SGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYV  186 (1237)
Q Consensus       119 ~NVvvvHCk~Gkgrt~g~~ia~yL~y~~----~~---~~~~~al~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Yf  186 (1237)
                      ---|||||.||-||| |++|-.=+|.-.    ..   -...+++.|+..++        |+++.+--|-|||+|-
T Consensus       451 AgpIvVHCSAGIGrT-GTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqR--------SGmVQTEaQYkFiY~A  516 (600)
T KOG0790|consen  451 AGPIVVHCSAGIGRT-GTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQR--------SGMVQTEAQYKFIYVA  516 (600)
T ss_pred             cCcEEEEccCCcCCc-ceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHh--------cchhhhHHhHHHHHHH
Confidence            127899999999998 876654433221    12   23567888884443        3444677899999863

>PLN02727 NAD kinase

Probab=96.87  E-value=0.0018  Score=82.14  Aligned_cols=100  Identities=17%  Similarity=0.284  Sum_probs=68.1

Q ss_pred             hhhh---cCHHHHHHHHhhhCCCCcEEEEEcCCCcchh-----hhhccccccCceEEeCCCCCCCCCcccHHHHHHHHHH
Q 000884           38 EDYK---KYIGGIIGQLREHSPDSQFLVFNFREEETKS-----LMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRS  109 (1237)
Q Consensus        38 ~~YR---n~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s-----~~~~~~s~~~~~V~~yP~~d~~~P~p~l~~l~~~~~~  109 (1237)
                      ..||   -.-+++.. |.++ + - =-|.||+++.-..     .+.......+.+.+++|..+.+.|  +.+.|..|.+.
T Consensus       262 ~~~rsgQpspe~la~-LA~~-G-f-KTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~ap--t~EqVe~fa~~  335 (986)
T PLN02727        262 AFWRGGQVTEEGLKW-LLEK-G-F-KTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAP--SAEQVEKFASL  335 (986)
T ss_pred             eEEEeCCCCHHHHHH-HHHC-C-C-eEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCC--CHHHHHHHHHH
Confidence            3466   23344544 4433 2 1 4599998765311     122233447889999998776666  78998888887


Q ss_pred             HHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCC
Q 000884          110 TESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQY  148 (1237)
Q Consensus       110 ~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~  148 (1237)
                      +++    .-..=|+|||+.|.+|+ |+|+||||.|.-..
T Consensus       336 l~~----slpkPVLvHCKSGarRA-GamvA~yl~~~~~~  369 (986)
T PLN02727        336 VSD----SSKKPIYLHSKEGVWRT-SAMVSRWKQYMTRS  369 (986)
T ss_pred             HHh----hcCCCEEEECCCCCchH-HHHHHHHHHHHccc
Confidence            644    23467999999999997 99999999987543

>PHA02742 protein tyrosine phosphatase; Provisional

Probab=96.83  E-value=0.0027  Score=73.60  Aligned_cols=87  Identities=14%  Similarity=0.125  Sum_probs=55.3

Q ss_pred             CCCCCCCCcccHHHHHHHHHHHHHHHHcC----------CCcEEEEEeccCCccchhHHHHHHHHHHcCC----CCHHHH
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSLG----------QHNVLMMHCERGGWPVLAFMLAALLIYRKQY----SGEYKT  154 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~~~~wL~~d----------~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~----~~~~~a  154 (1237)
                      -|.|||.| ..-..+++|++.+..|-...          ...=+||||.+|-||| |+.||...+....-    -...++
T Consensus       190 ~Wpd~gvP-~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRT-GtF~aid~~i~~~~~~~~v~v~~~  267 (303)
T PHA02742        190 DWPHGGLP-RDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRA-GAFCAIDICISKYNERAIIPLLSI  267 (303)
T ss_pred             CCCCCCcC-CCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchh-HHHHHHHHHHHHHHhcCCCCHHHH
Confidence            67899987 35577888888887764221          1246999999999997 99888776654321    122234


Q ss_pred             HHHHHHhchhhhhccCCCCCCCchHHHHHHH
Q 000884          155 LDMIYRQAPRELLQLLSPLNPVPSQLRYLQY  185 (1237)
Q Consensus       155 l~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Y  185 (1237)
                      +..++++|+ +.   |    .+.-|-.|++.
T Consensus       268 V~~lR~qR~-~~---V----qt~~QY~F~y~  290 (303)
T PHA02742        268 VRDLRKQRH-NC---L----SLPQQYIFCYF  290 (303)
T ss_pred             HHHHHhhcc-cc---c----CCHHHHHHHHH
Confidence            444433332 21   2    56778777664

>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]

Probab=96.69  E-value=0.0042  Score=71.26  Aligned_cols=99  Identities=13%  Similarity=0.156  Sum_probs=66.1

Q ss_pred             cCceEEeCCCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHH-HHHHcCCCCHHHHHHHHH
Q 000884           81 FDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAAL-LIYRKQYSGEYKTLDMIY  159 (1237)
Q Consensus        81 ~~~~V~~yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~y-L~y~~~~~~~~~al~~~~  159 (1237)
                      +-..+..+-|.|||.| -+.+.|..|.+....|+..+ .-..+|||.||-||| ||.||-- |++.-......+-...+.
T Consensus       251 ~ir~f~y~~wPd~gvp-~~~~sl~~f~~~~r~~~~~~-~~p~iVhCSAGVgRT-GTFiald~LLqq~~~~~~vdi~~iv~  327 (374)
T KOG0791|consen  251 KIRHFHYTAWPDFGVP-SSTESLLQFVRMVRQSLDTS-KGPTIVHCSAGVGRT-GTFIALDRLLQQIDSEETVDIFGVVL  327 (374)
T ss_pred             eeEEEEEeeccccCCC-CCchhHHHHHHHHHhhcccC-CCceeEEeecccccc-cchHhHHHHHHHhcccccccHHHHHH
Confidence            3334555688999998 56789999999999999987 678999999999997 9888876 454443443333444443


Q ss_pred             HhchhhhhccCCCCCCCchHHHHHHHHH
Q 000884          160 RQAPRELLQLLSPLNPVPSQLRYLQYVS  187 (1237)
Q Consensus       160 ~~~~~~~~~gv~~l~~~PSQ~RYv~Yf~  187 (1237)
                      ..+..+ .+.|    .+=-|.-||++--
T Consensus       328 ~lR~~R-~~mV----qte~Qyvfl~~c~  350 (374)
T KOG0791|consen  328 ELRSAR-MLMV----QTEDQYVFLHQCV  350 (374)
T ss_pred             Hhhhcc-cccc----chHHHHHHHHHHH
Confidence            322222 1222    4445555665543

>PHA02746 protein tyrosine phosphatase; Provisional

Probab=96.61  E-value=0.0068  Score=70.86  Aligned_cols=88  Identities=13%  Similarity=0.057  Sum_probs=54.7

Q ss_pred             CCCCCCCCcccHHHHHHHHHHHHHHHHc-------CC--CcEEEEEeccCCccchhHHHHHHHHHHcC----CCCHHHHH
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSL-------GQ--HNVLMMHCERGGWPVLAFMLAALLIYRKQ----YSGEYKTL  155 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~~~~wL~~-------d~--~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~----~~~~~~al  155 (1237)
                      -|.|||.| .....++.|++.+..|-..       ++  ..-+||||.+|.||| |+.||.-.+....    .-...+++
T Consensus       209 ~Wpd~gvP-~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRT-Gtfcaid~~l~~l~~~~~vdv~~~V  286 (323)
T PHA02746        209 DWPDNGIP-TGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRA-GTFCAIDNALEQLEKEKEVCLGEIV  286 (323)
T ss_pred             CCCCCCcC-CCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcc-hhHHHHHHHHHHHHhcCCCCHHHHH
Confidence            67888987 3466788888888877431       11  247999999999997 9988765543321    12233344


Q ss_pred             HHHHHhchhhhhccCCCCCCCchHHHHHHHH
Q 000884          156 DMIYRQAPRELLQLLSPLNPVPSQLRYLQYV  186 (1237)
Q Consensus       156 ~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Yf  186 (1237)
                      ..++++|. .   .|    ...-|-.|++-.
T Consensus       287 ~~lR~qR~-~---~V----qt~~QY~F~y~~  309 (323)
T PHA02746        287 LKIRKQRH-S---SV----FLPEQYAFCYKA  309 (323)
T ss_pred             HHHHhccc-c---cC----CCHHHHHHHHHH
Confidence            44433222 1   12    577888777643

>PHA02740 protein tyrosine phosphatase; Provisional

Probab=96.57  E-value=0.0041  Score=71.77  Aligned_cols=91  Identities=10%  Similarity=0.119  Sum_probs=55.2

Q ss_pred             EEeC---CCCCCCCCcccHHHHHHHHHHHHHHHH-------cCCCcEEEEEeccCCccchhHHHHHHHHHHcC-CCC---
Q 000884           85 IMDY---PRQYEGCPLLTMEVIHHFLRSTESWLS-------LGQHNVLMMHCERGGWPVLAFMLAALLIYRKQ-YSG---  150 (1237)
Q Consensus        85 V~~y---P~~d~~~P~p~l~~l~~~~~~~~~wL~-------~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~-~~~---  150 (1237)
                      |.+|   -|.|||.|. .-..++.|++.+.++..       .+...=+||||.+|-||| |+.||.-.+.... ..+   
T Consensus       178 V~Hfqyt~WPd~gvP~-~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRT-GtFcaiDi~l~~~~~~~~vd  255 (298)
T PHA02740        178 ISHFQYTAWPADGFSH-DPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSS-AVFCVFDICATEFDKTGMLS  255 (298)
T ss_pred             EEEEeecCCCCCCcCC-CHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchh-HHHHHHHHHHHHHHhcCccc
Confidence            5554   677899873 45667778777665431       222346899999999997 9988876554332 122   


Q ss_pred             HHHHHHHHHHhchhhhhccCCCCCCCchHHHHHHH
Q 000884          151 EYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQY  185 (1237)
Q Consensus       151 ~~~al~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Y  185 (1237)
                      ..+++..++++|. .   .|    ..+.|-.|++.
T Consensus       256 i~~~V~~lR~qR~-~---~V----qt~~QY~F~y~  282 (298)
T PHA02740        256 IANALKKVRQKKY-G---CM----NCLDDYVFCYH  282 (298)
T ss_pred             HHHHHHHHHhhCc-c---cc----CCHHHHHHHHH
Confidence            2223333322222 1   12    67888888765

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=96.44  E-value=0.015  Score=59.36  Aligned_cols=114  Identities=12%  Similarity=0.099  Sum_probs=67.4

Q ss_pred             eeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhh------hhccccccCceEEeCC
Q 000884           16 LLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSL------MANVLSEFDITIMDYP   89 (1237)
Q Consensus        16 LtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~------~~~~~s~~~~~V~~yP   89 (1237)
                      +.-|++++++.  +=+++           +| ...|.+. +-  -.|+||+...-...      +.......+..+.++|
T Consensus         2 ~~~i~~~~~~s--~qlt~-----------~d-~~~L~~~-Gi--ktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iP   64 (135)
T TIGR01244         2 IRKLTEHLYVS--PQLTK-----------AD-AAQAAQL-GF--KTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQP   64 (135)
T ss_pred             ceEcCCCeeEc--CCCCH-----------HH-HHHHHHC-CC--cEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEee
Confidence            45677887776  22322           22 3445544 22  46999985321100      0001123577888888


Q ss_pred             CCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q 000884           90 RQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMI  158 (1237)
Q Consensus        90 ~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~  158 (1237)
                      ......   .-+.+..|.+.+++     ...-|++||+.|+ |+ |++.+-++.+.|  -..+++++..
T Consensus        65 v~~~~~---~~~~v~~f~~~~~~-----~~~pvL~HC~sG~-Rt-~~l~al~~~~~g--~~~~~i~~~~  121 (135)
T TIGR01244        65 VTAGDI---TPDDVETFRAAIGA-----AEGPVLAYCRSGT-RS-SLLWGFRQAAEG--VPVEEIVRRA  121 (135)
T ss_pred             cCCCCC---CHHHHHHHHHHHHh-----CCCCEEEEcCCCh-HH-HHHHHHHHHHcC--CCHHHHHHHH
Confidence            765442   55677777766652     2356999999999 96 888777776655  3566677764

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

>PHA02738 hypothetical protein; Provisional

Probab=96.42  E-value=0.012  Score=68.87  Aligned_cols=92  Identities=12%  Similarity=0.097  Sum_probs=56.4

Q ss_pred             EEeC---CCCCCCCCcccHHHHHHHHHHHHHHHHc--------CC----CcEEEEEeccCCccchhHHHHHHHHHHcC--
Q 000884           85 IMDY---PRQYEGCPLLTMEVIHHFLRSTESWLSL--------GQ----HNVLMMHCERGGWPVLAFMLAALLIYRKQ--  147 (1237)
Q Consensus        85 V~~y---P~~d~~~P~p~l~~l~~~~~~~~~wL~~--------d~----~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~--  147 (1237)
                      |.+|   -|.|++.|. .-..+++|++.+..+-..        +.    ..-+||||.+|.||| |+.||.-.+....  
T Consensus       179 V~h~~y~~Wpd~gvP~-~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRt-GtFcaidi~i~~~~~  256 (320)
T PHA02738        179 VTHFNFTAWPDHDVPK-NTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRT-PCYCVVDISISRFDA  256 (320)
T ss_pred             EEEEEECCCCCCCCCC-CHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChh-hhhhHHHHHHHHHHh
Confidence            5553   678888873 446678888888765321        11    236999999999997 8887766554432  


Q ss_pred             --CCCHHHHHHHHHHhchhhhhccCCCCCCCchHHHHHHHH
Q 000884          148 --YSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYV  186 (1237)
Q Consensus       148 --~~~~~~al~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Yf  186 (1237)
                        .-...+++..++++|. .   .|    ..+.|-.|++..
T Consensus       257 ~~~vdv~~~V~~lR~qR~-~---~v----qt~~QY~F~y~~  289 (320)
T PHA02738        257 CATVSIPSIVSSIRNQRY-Y---SL----FIPFQYFFCYRA  289 (320)
T ss_pred             cCCcCHHHHHHHHHhhhh-h---cc----CCHHHHHHHHHH
Confidence              1122334444433332 1   22    678898887653

>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=96.29  E-value=0.072  Score=61.31  Aligned_cols=42  Identities=19%  Similarity=0.293  Sum_probs=34.9

Q ss_pred             CCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHh
Q 000884          118 QHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQ  161 (1237)
Q Consensus       118 ~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~  161 (1237)
                      .+-.|+|||.+|..| +++++.||||+...++-.+ |++++-.+
T Consensus       154 ~~~~vlVHC~~GvSR-Sat~viAYlM~~~~~~l~~-A~~~vk~~  195 (285)
T KOG1716|consen  154 KGGKVLVHCQAGVSR-SATLVIAYLMKYEGLSLED-AYELVKSR  195 (285)
T ss_pred             CCCeEEEEcCCccch-hHHHHHHHHHHHcCCCHHH-HHHHHHHh
Confidence            467899999999999 4999999999998776655 99988433

>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]

Probab=96.26  E-value=2.1  Score=56.77  Aligned_cols=75  Identities=17%  Similarity=0.232  Sum_probs=43.1

Q ss_pred             ccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884         1127 FSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAV 1201 (1237)
Q Consensus      1127 f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~ 1201 (1237)
                      |..-+.....-+..++..|..+.......+.++...+.....++.....|..++..|+.......+++....++.
T Consensus       719 f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~f~~~r~fl~~~~~~~~e~~~~~~k~  793 (833)
T KOG1922|consen  719 FSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKEEITPEQVFSILRDFLRTFDKAHEENKKAEEKE  793 (833)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            434343333333445555666666666666666666654433333345677888888888877666655554433

>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B

Probab=95.98  E-value=0.0079  Score=63.27  Aligned_cols=37  Identities=19%  Similarity=0.192  Sum_probs=24.6

Q ss_pred             HHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcC
Q 000884          109 STESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQ  147 (1237)
Q Consensus       109 ~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~  147 (1237)
                      .+-.+|...+ +-+++||.+||-|| |+++|-+|...|.
T Consensus       115 ~~~~~l~~~~-~p~l~HC~aGKDRT-G~~~alll~~lGV  151 (164)
T PF13350_consen  115 KIFELLADAP-GPVLFHCTAGKDRT-GVVAALLLSLLGV  151 (164)
T ss_dssp             HHHHHHH-TT---EEEE-SSSSSHH-HHHHHHHHHHTT-
T ss_pred             HHHHHhccCC-CcEEEECCCCCccH-HHHHHHHHHHcCC
Confidence            3344455555 79999999999997 9988888776664

>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]

Probab=95.89  E-value=0.011  Score=65.12  Aligned_cols=52  Identities=13%  Similarity=0.206  Sum_probs=35.2

Q ss_pred             CCCCCCCCcccHHHHHHHHHHHHHHHHcC-CCcEEEEEeccCCccchhHHHHHHHHHHc
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSLG-QHNVLMMHCERGGWPVLAFMLAALLIYRK  146 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~~~~wL~~d-~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~  146 (1237)
                      -|.|-+.|  ++..|+++.+   +..... ..+.++|||.||-||| ||.|+--.+.+-
T Consensus       192 nW~D~~~p--~i~sl~~~~~---sl~~sp~~t~piiVHCSAGvGRT-GTFIalD~ll~~  244 (302)
T COG5599         192 NWVDFNVP--DIRSLTEVIH---SLNDSPVRTGPIIVHCSAGVGRT-GTFIALDILLRM  244 (302)
T ss_pred             CccccCCc--CHHHHHHHHH---HhhcCcCCCCCEEEEeccCCCCc-ceeeeHHHHHhc
Confidence            34555555  5555555444   444332 5688999999999998 999988766543

>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]

Probab=95.42  E-value=0.12  Score=56.52  Aligned_cols=103  Identities=17%  Similarity=0.173  Sum_probs=60.9

Q ss_pred             HHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCC----CCcccHHHHHHHHHHHHHHHHcCCCcEEE
Q 000884           48 IGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEG----CPLLTMEVIHHFLRSTESWLSLGQHNVLM  123 (1237)
Q Consensus        48 ~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~----~P~p~l~~l~~~~~~~~~wL~~d~~NVvv  123 (1237)
                      ..||++-|-   +-|.-||.|.|-.....-+...++.+.++..+-..    -|  .-.+..+.++.+-+.|-.-.+.=++
T Consensus        78 fsFL~~L~L---ksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P--~~~~~~~~i~~~l~~lld~~N~P~L  152 (249)
T KOG1572|consen   78 FSFLKTLHL---KSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEP--FVNIPDHSIRKALKVLLDKRNYPIL  152 (249)
T ss_pred             hHHHHHhhh---heEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCC--CCCChHHHHHHHHHHHhcccCCceE
Confidence            678887664   45667887765322222234455566665443222    22  2333444444444444445677899


Q ss_pred             EEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q 000884          124 MHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMI  158 (1237)
Q Consensus       124 vHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~  158 (1237)
                      |||+.||.|| |++|+|+=...+++.+.  .|+-|
T Consensus       153 ihc~rGkhRt-g~lVgclRklq~W~lss--il~Ey  184 (249)
T KOG1572|consen  153 IHCKRGKHRT-GCLVGCLRKLQNWSLSS--ILDEY  184 (249)
T ss_pred             EecCCCCcch-hhhHHHHHHHhccchhH--HHHHH
Confidence            9999999997 99999997555544332  45544

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=95.40  E-value=0.035  Score=61.00  Aligned_cols=68  Identities=13%  Similarity=0.216  Sum_probs=47.5

Q ss_pred             EEeCCCCCCCCCcccHHHHHHHHHHHHHHHHc--CCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHH
Q 000884           85 IMDYPRQYEGCPLLTMEVIHHFLRSTESWLSL--GQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIY  159 (1237)
Q Consensus        85 V~~yP~~d~~~P~p~l~~l~~~~~~~~~wL~~--d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~  159 (1237)
                      ...||..||...  .|   -.|.-+..+|+..  .++--|+|||.||-.| +.|++.+|||..-.+ +-.+|++++.
T Consensus       220 YkqipisDh~Sq--nl---s~ffpEAIsfIdeArsk~cgvLVHClaGISR-SvTvtvaYLMqkl~l-slndAyd~Vk  289 (343)
T KOG1717|consen  220 YKQIPISDHASQ--NL---SQFFPEAISFIDEARSKNCGVLVHCLAGISR-SVTVTVAYLMQKLNL-SLNDAYDFVK  289 (343)
T ss_pred             EEeeeccchhhh--hh---hhhhHHHHHHHHHhhccCCcEEEeeeccccc-hhHHHHHHHHHHhcc-chhhHHHHHH
Confidence            455788887654  33   3333344444443  4556799999999999 599999999976655 4556999984

>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]

Probab=94.95  E-value=0.047  Score=61.51  Aligned_cols=50  Identities=14%  Similarity=0.094  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCH
Q 000884          101 EVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGE  151 (1237)
Q Consensus       101 ~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~  151 (1237)
                      +..++-+..+-.-+...++--|++||++||-|| |+++|||+...+.....
T Consensus       118 ~~~~e~~~~~~~l~~~~e~~PvL~HC~~GkdRT-Gl~~al~r~~~~~~~~~  167 (249)
T COG2365         118 EDAAERLVELLQLLADAENGPVLIHCTAGKDRT-GLVAALYRKLVGGSDET  167 (249)
T ss_pred             hhhHHHHHHHHHHHhhcccCCEEEecCCCCcch-HHHHHHHHHHhCCchhH
Confidence            334444444444444444578999999999998 99999999999876554

>smart00498 FH2 Formin Homology 2 Domain

Probab=94.57  E-value=0.12  Score=63.15  Aligned_cols=90  Identities=20%  Similarity=0.263  Sum_probs=69.9

Q ss_pred             ccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884         1127 FSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAIS---ENFSKILREFLRFAEAEVRTLASLYSAVGR 1203 (1237)
Q Consensus      1127 f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~---d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~ 1203 (1237)
                      |..-+..+..++..+++.|...+.++.+.++++...++....+....   ..|...+..|.+.+++.++.+++.-++...
T Consensus       311 f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~  390 (432)
T smart00498      311 FIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQ  390 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555788899999999999999999999999987665542222   245566777778888888888888888888


Q ss_pred             HHHHHHHHcccCC
Q 000884         1204 NVDALILYFGEDP 1216 (1237)
Q Consensus      1204 ~~~~l~~yFGEdp 1216 (1237)
                      ..+++.+||+.++
T Consensus       391 ~~~~~~~~~~~~~  403 (432)
T smart00498      391 LVKETTEYEQSSS  403 (432)
T ss_pred             HHHHHHhhhhhhh
Confidence            8899999998754

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.

>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]

Probab=93.95  E-value=0.15  Score=61.47  Aligned_cols=86  Identities=20%  Similarity=0.220  Sum_probs=47.3

Q ss_pred             CCCCCCCCcccHHHHHHHHHHHHHHHHcC-CCcEEEEEeccCCccchhHHHHHHHHHHcCC-----CCHHHHHHHHHHhc
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSLG-QHNVLMMHCERGGWPVLAFMLAALLIYRKQY-----SGEYKTLDMIYRQA  162 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~~~~wL~~d-~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~-----~~~~~al~~~~~~~  162 (1237)
                      -|.||+.|. ....++.+++.  .-+... ...=++|||.+|.||| |++++...+.....     ....+.+..+..+|
T Consensus       271 ~WPd~~~p~-~~~~~l~~~~~--~~~~~~~~~~P~vVhcsaG~gRt-gt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR  346 (415)
T KOG0789|consen  271 NWPDHGAPD-SVKSILPLLRQ--SVLELRPKQEPIEVHCSAGAGRA-GTLVLIEHALIELQGPEGEPPIDEILREIRYQR  346 (415)
T ss_pred             CCccccCCc-chHHHHHHHHh--hhhhhcCCCCCeEEECCCCCCcc-chHHHHHHHHHHHhcCCCCccHHHHHHHHHHHh
Confidence            456677762 23444444443  223333 3457899999999997 99887664444432     22333444332222


Q ss_pred             hhhhhccCCCCCCCchHHHHHHHH
Q 000884          163 PRELLQLLSPLNPVPSQLRYLQYV  186 (1237)
Q Consensus       163 ~~~~~~gv~~l~~~PSQ~RYv~Yf  186 (1237)
                      ..    .+    .+.-|-.|++..
T Consensus       347 ~~----~v----qt~~Qy~f~~~~  362 (415)
T KOG0789|consen  347 PG----AV----QSPLQYLFIYAA  362 (415)
T ss_pred             hh----cc----cchhHHHHHHHH
Confidence            11    12    677787777643

>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]

Probab=93.89  E-value=1.4  Score=51.61  Aligned_cols=8  Identities=38%  Similarity=0.380  Sum_probs=3.7

Q ss_pred             CccccCCC
Q 000884          351 CFEEKGGL  358 (1237)
Q Consensus       351 ~~~~~~~~  358 (1237)
                      .+|.|++|
T Consensus       141 RDdgk~gL  148 (518)
T KOG1830|consen  141 RDDGKDGL  148 (518)
T ss_pred             ccCCcccc
Confidence            44444444

>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=93.77  E-value=0.6  Score=48.59  Aligned_cols=123  Identities=15%  Similarity=0.080  Sum_probs=69.0

Q ss_pred             hccCCCCCCeeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEE
Q 000884            7 LFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIM   86 (1237)
Q Consensus         7 ~~~~~~~lDLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~   86 (1237)
                      ++....=-+|+.||+-+|.-. |--|              +.+.|-++++-  =+|.|-+-|.-+..      .=+.+-+
T Consensus         8 ~~~~~~~~~~SqIt~sLfl~~-GvaA--------------~~k~~l~~~~I--t~IiNat~E~pn~~------l~~~qy~   64 (198)
T KOG1718|consen    8 LEVQPSIGGMSQITPSLFLSN-GVAA--------------NDKLLLKKRKI--TCIINATTEVPNTS------LPDIQYM   64 (198)
T ss_pred             cccCCCccchhhcCcceeEec-cccc--------------cCHHHHHhcCc--eEEEEcccCCCCcc------CCCceeE
Confidence            333344457889998887642 2221              23344456664  68999988864311      1122344


Q ss_pred             eCCCCCCCCCcccHHHHHHHHH-HHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q 000884           87 DYPRQYEGCPLLTMEVIHHFLR-STESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMI  158 (1237)
Q Consensus        87 ~yP~~d~~~P~p~l~~l~~~~~-~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~  158 (1237)
                      ..|..|+-.-  .|..-++... .|++- ..+ +--.+|||-||-.| +|.++-+|||... +-+-.||..++
T Consensus        65 kv~~~D~p~~--~l~~hfD~vAD~I~~v-~~~-gG~TLvHC~AGVSR-SAsLClAYLmK~~-~msLreAy~~v  131 (198)
T KOG1718|consen   65 KVPLEDTPQA--RLYDHFDPVADKIHSV-IMR-GGKTLVHCVAGVSR-SASLCLAYLMKYH-CMSLREAYHWV  131 (198)
T ss_pred             EEEcccCCcc--hhhhhhhHHHHHHHHH-Hhc-CCcEEEEEccccch-hHHHHHHHHHHHc-cchHHHHHHHH
Confidence            4455554221  2222222121 12222 222 34578999999999 6999999998655 45566788876

>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A

Probab=91.69  E-value=0.27  Score=50.43  Aligned_cols=65  Identities=14%  Similarity=0.097  Sum_probs=41.0

Q ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHcC-CCcEEEEEeccC--Cccc-hhHHHHHHHHHHcCCCCHHHHHHHH
Q 000884           91 QYEGCPLLTMEVIHHFLRSTESWLSLG-QHNVLMMHCERG--GWPV-LAFMLAALLIYRKQYSGEYKTLDMI  158 (1237)
Q Consensus        91 ~d~~~P~p~l~~l~~~~~~~~~wL~~d-~~NVvvvHCk~G--kgrt-~g~~ia~yL~y~~~~~~~~~al~~~  158 (1237)
                      .|.|+  +.|.+|++||..+++-|+.. ..+-.+|||-..  +-|+ .+++||||++....++ +++|+..+
T Consensus        39 ~DFGP--lnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~s-pe~A~~~l  107 (141)
T PF14671_consen   39 ADFGP--LNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMS-PEEAYKPL  107 (141)
T ss_dssp             S--------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS----HHHHHHHH
T ss_pred             CcCCC--ccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCC-HHHHHHHH
Confidence            45565  49999999999999999972 234556666543  3344 6999999998777664 55588877

>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]

Probab=87.56  E-value=0.93  Score=59.26  Aligned_cols=53  Identities=17%  Similarity=0.329  Sum_probs=39.5

Q ss_pred             ccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHc-CCCCH
Q 000884           98 LTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRK-QYSGE  151 (1237)
Q Consensus        98 p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~-~~~~~  151 (1237)
                      ..-..|..+......|=....+.=.+|||.+|.||+ |+.||+-++... ...+.
T Consensus       997 ~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rs-g~f~ai~~l~e~~~~e~~ 1050 (1087)
T KOG4228|consen  997 QSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRT-GTFCAISILLERMRKEGV 1050 (1087)
T ss_pred             CCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcce-eehHHHHHHHHHHhhcCc
Confidence            344566667777788888877888999999999997 888887766554 34443

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=87.51  E-value=1.1  Score=44.09  Aligned_cols=93  Identities=19%  Similarity=0.218  Sum_probs=48.3

Q ss_pred             CeeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCc--c----hhhhhccccccCceEEeC
Q 000884           15 GLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEE--T----KSLMANVLSEFDITIMDY   88 (1237)
Q Consensus        15 DLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~--~----~s~~~~~~s~~~~~V~~y   88 (1237)
                      |+.-|++++.+.  +-|+.           +++. .|... +-  =.|.|++...  .    ...+......++++..+.
T Consensus         1 di~~i~~~~~vs--~Q~~~-----------~d~~-~la~~-Gf--ktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~i   63 (110)
T PF04273_consen    1 DIRQISDDLSVS--GQPSP-----------EDLA-QLAAQ-GF--KTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHI   63 (110)
T ss_dssp             --EEEETTEEEE--CS--H-----------HHHH-HHHHC-T----EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE-
T ss_pred             CCEecCCCeEEC--CCCCH-----------HHHH-HHHHC-CC--cEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEe
Confidence            778899999887  44432           2222 33332 21  3488987331  1    112223455789999999


Q ss_pred             CCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccc
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPV  133 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt  133 (1237)
                      |....+ .  +.+.+..|.+.+++    -++ =|++||+.|. |.
T Consensus        64 Pv~~~~-~--~~~~v~~f~~~l~~----~~~-Pvl~hC~sG~-Ra   99 (110)
T PF04273_consen   64 PVDGGA-I--TEEDVEAFADALES----LPK-PVLAHCRSGT-RA   99 (110)
T ss_dssp             ---TTT-----HHHHHHHHHHHHT----TTT-SEEEE-SCSH-HH
T ss_pred             ecCCCC-C--CHHHHHHHHHHHHh----CCC-CEEEECCCCh-hH
Confidence            987654 2  77888888877655    233 4889999887 74

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]

Probab=87.25  E-value=0.64  Score=57.30  Aligned_cols=71  Identities=18%  Similarity=0.336  Sum_probs=55.3

Q ss_pred             CCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHH-----HHHHHHHhc
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYK-----TLDMIYRQA  162 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~-----al~~~~~~~  162 (1237)
                      -|.++|.|. .-..|+.|-+.+.+-+. +.---|+|||-+|-||| ||.|..=|+..++..++.+     +|+++..++
T Consensus       899 SWp~egvPa-sarslLdFRRKVNK~YR-GRScpIiVH~sdGaGRT-G~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR  974 (1004)
T KOG0793|consen  899 SWPDEGVPA-SARSLLDFRRKVNKCYR-GRSCPIIVHCSDGAGRT-GTYILIDMVLNRMAKGAKEIDIAATLEHLRDQR  974 (1004)
T ss_pred             cccccCCcc-chHHHHHHHHHhhhhcc-CCCCceEEEccCCCCcc-ceeeeHHHHHHHHhccchhhhHHHHHHHHhhcC
Confidence            677888884 66788999999887776 34677899999999997 9998888888887766653     677764444

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=87.03  E-value=33  Score=45.43  Aligned_cols=64  Identities=23%  Similarity=0.186  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccC--CCc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884         1145 LAEEMQALSKGLEKVVQELSMSEN--DGA--ISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDAL 1208 (1237)
Q Consensus      1145 L~~e~~~l~k~l~kl~~el~~s~~--d~~--~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l 1208 (1237)
                      .++.++.|.+.++++.+.++....  ...  .-+..+...++.+..|.++++.|+++-.+.++.-..|
T Consensus      1659 a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L 1726 (1758)
T KOG0994|consen 1659 AEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQAL 1726 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            344455566666665555443211  110  1234555566667777777777766654444444444

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=86.76  E-value=21  Score=39.59  Aligned_cols=52  Identities=12%  Similarity=0.133  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhh
Q 000884         1178 KILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSAD 1233 (1237)
Q Consensus      1178 ~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~d 1233 (1237)
                      ..+..=+..++..+..++..|..+.+..+.=+..|-.+    ...+|-..|..|++
T Consensus       166 ~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~----k~~d~k~~l~~~~~  217 (236)
T PF09325_consen  166 EQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKE----KVKDFKSMLEEYAE  217 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            44556666777777777777777777765555555543    34566666666655

This is the C-terminal dimerisation domain [].

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=85.99  E-value=14  Score=40.50  Aligned_cols=69  Identities=14%  Similarity=0.128  Sum_probs=29.0

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccc
Q 000884         1010 CEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQ 1079 (1237)
Q Consensus      1010 ~EqF~~~l~~vp~l~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~ 1079 (1237)
                      +|-++..++-+|- ..|...++|+..+...+.-.-...-.+.-+|--+.--..++++....=..|+..|.
T Consensus        11 ~Eial~~iL~Lpi-p~r~~~~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~   79 (216)
T KOG1962|consen   11 AEIALFLILLLPI-PPRRRRKIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANP   79 (216)
T ss_pred             HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC
Confidence            4555555555554 44555555555444333222111122222233333333444444443334555443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=85.28  E-value=6.6  Score=51.33  Aligned_cols=21  Identities=24%  Similarity=0.224  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHhcccccccCC
Q 000884         1062 KLRRIMQTILSLGNALNQGTA 1082 (1237)
Q Consensus      1062 ~L~~lL~~IL~lGN~LN~gt~ 1082 (1237)
                      ..+.+-.+|..|+|||+..++
T Consensus      1469 s~~el~~Li~~v~~Flt~~~a 1489 (1758)
T KOG0994|consen 1469 SNRELRNLIQQVRDFLTQPDA 1489 (1758)
T ss_pred             HHHHHHHHHHHHHHHhcCCCC
Confidence            345555688899999998764

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=82.67  E-value=11  Score=42.95  Aligned_cols=76  Identities=21%  Similarity=0.261  Sum_probs=47.5

Q ss_pred             ccccchhhhhhhhhccc--------CCccchhHHHHHHHhhc--CcccccccccccChHHHhhhhHHHHHHHHHHHHHHH
Q 000884         1087 IGFRLDSLLKLTDTRAR--------NNKMTLMHYLCKVLADK--LPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGL 1156 (1237)
Q Consensus      1087 ~GFkL~sL~KL~dtKs~--------d~k~tLLhylv~~l~~~--~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l 1156 (1237)
                      .+|+++.=.|+.|+|..        +.+.+|.+.|-+.+..+  .-..+.-.-|+..++.+-+..++.+.++++++++.+
T Consensus       106 ~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l  185 (267)
T PF10234_consen  106 SLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQL  185 (267)
T ss_pred             chhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45565554567776652        45677888887665332  122334455777778777777777777777777766


Q ss_pred             HHHHHH
Q 000884         1157 EKVVQE 1162 (1237)
Q Consensus      1157 ~kl~~e 1162 (1237)
                      ..+..+
T Consensus       186 ~~l~~d  191 (267)
T PF10234_consen  186 NNLASD  191 (267)
T ss_pred             HHHHHH
Confidence            666544

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []

Probab=82.59  E-value=21  Score=46.15  Aligned_cols=44  Identities=14%  Similarity=0.102  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHH
Q 000884         1184 LRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRS 1231 (1237)
Q Consensus      1184 l~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F 1231 (1237)
                      .+..+.+...|.+.|+.+++.++.|.+=+|||    .+..||..+.+.
T Consensus       237 ~e~L~~r~~~L~~k~~~L~~e~~~LK~ELied----RW~~vFr~l~~q  280 (683)
T PF08580_consen  237 CEELEDRYERLEKKWKKLEKEAESLKKELIED----RWNIVFRNLGRQ  280 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHH
Confidence            33344444556666777777777777777776    355555544443

KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].

>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins

Probab=80.03  E-value=4.2  Score=44.91  Aligned_cols=17  Identities=12%  Similarity=0.325  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 000884         1041 SDLRSSLNVVNSAAEQV 1057 (1237)
Q Consensus      1041 ~dl~~~l~~v~~A~~el 1057 (1237)
                      .+++..++....+++.|
T Consensus        10 ~~le~~~d~~~~~~~~l   26 (215)
T cd07593          10 LELEKEIELRKEGMERL   26 (215)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444444333

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1237
2z6e_A	419	Crystal Structure Of Human Daam1 Fh2 Length = 419		1e-38
2j1d_G	483	Crystallization Of Hdaam1 C-Terminal Fragment Lengt		2e-38
4eah_A	402	Crystal Structure Of The Formin Homology 2 Domain O		1e-33
3o4x_E	467	Crystal Structure Of Complex Between Amino And Carb		1e-29
3obv_E	457	Autoinhibited Formin Mdia1 Structure Length = 457		4e-29
1v9d_A	340	Crystal Structure Of The Core Fh2 Domain Of Mouse M		4e-29
1ux4_A	410	Crystal Structures Of A Formin Homology-2 Domain Re		3e-09
1y64_B	443	Bni1p Formin Homology 2 Domain Complexed With Atp-a		4e-09
1ux5_A	411	Crystal Structures Of A Formin Homology-2 Domain Re		4e-09
3n0a_A	361	Crystal Structure Of Auxilin (40-400) Length = 361		4e-07
1d5r_A	324	Crystal Structure Of The Pten Tumor Suppressor Leng		4e-06

>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2 Length = 419

Iteration: 1
 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 196/366 (53%), Gaps = 20/366 (5%)
Query: 869  TKKLKPLHWLKL-TRAVQGSLWAEAQKSGEASKAPEI-DMSELENLFSATIPNSEKGGKP 926
            T  LK  +W KL    ++G++W E     + +K  +I D+ +LE  FSA     +     
Sbjct: 14   TNALKSFNWSKLPENKLEGTVWTEI----DDTKVFKILDLEDLERTFSAYQRQQDFFVNS 69
Query: 927  NQRVPRGPQSD----------KVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLAL-EDSA 975
            N +       D          ++ +ID RRA NC I+LS++K+   E+ R++L + E   
Sbjct: 70   NSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQED 129
Query: 976  IDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQ 1035
            +  D +E L+KF P K ++DLL+ +  + +++ K ++F  E+ ++   + +L+   FK +
Sbjct: 130  LPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKK 189
Query: 1036 FHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLL 1095
            F  +V++++  +  + S +E+V  S  L+++++ +L+ GN +N+G  RG A GF++ SL 
Sbjct: 190  FAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLN 248
Query: 1096 KLTDTRARNNK-MTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSK 1154
            K+ DT++  +K +TL+HYL  ++ +K P +L+ +E+L  +  A+K+ +  L +E+  L  
Sbjct: 249  KIADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRS 308
Query: 1155 GLEKVVQELSMSEND-GAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFG 1213
            GL+ V  EL   ++      + F  ++ +F+  A      +  L +         + +FG
Sbjct: 309  GLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFG 368
Query: 1214 EDPARC 1219
            E+  + 
Sbjct: 369  EEAGKI 374

>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment Length = 483

Iteration: 1
 Score =  158 bits (399), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 196/366 (53%), Gaps = 20/366 (5%)
Query: 869  TKKLKPLHWLKL-TRAVQGSLWAEAQKSGEASKAPEI-DMSELENLFSATIPNSEKGGKP 926
            T  LK  +W KL    ++G++W E     + +K  +I D+ +LE  FSA     +     
Sbjct: 12   TNALKSFNWSKLPENKLEGTVWTEI----DDTKVFKILDLEDLERTFSAYQRQQDFFVNS 67
Query: 927  NQRVPRGPQSD----------KVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLAL-EDSA 975
            N +       D          ++ +ID RRA NC I+LS++K+   E+ R++L + E   
Sbjct: 68   NSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQED 127
Query: 976  IDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQ 1035
            +  D +E L+KF P K ++DLL+ +  + +++ K ++F  E+ ++   + +L+   FK +
Sbjct: 128  LPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKK 187
Query: 1036 FHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLL 1095
            F  +V++++  +  + S +E+V  S  L+++++ +L+ GN +N+G  RG A GF++ SL 
Sbjct: 188  FAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLN 246
Query: 1096 KLTDTRARNNK-MTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSK 1154
            K+ DT++  +K +TL+HYL  ++ +K P +L+ +E+L  +  A+K+ +  L +E+  L  
Sbjct: 247  KIADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRS 306
Query: 1155 GLEKVVQELSMSEND-GAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFG 1213
            GL+ V  EL   ++      + F  ++ +F+  A      +  L +         + +FG
Sbjct: 307  GLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFG 366
Query: 1214 EDPARC 1219
            E+  + 
Sbjct: 367  EEAGKI 372

>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3 Bound To Actin Length = 402

Iteration: 1
 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 170/323 (52%), Gaps = 17/323 (5%)
Query: 903  EIDMSELENLFS--ATIPNSEKGGKPNQRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVP 960
            ++D+   E LF   A  P  +     N+   +   + KV L++  RA N  I L K    
Sbjct: 48   DLDLDRFEELFKTKAQGPALDLICSKNKTAQKA--ASKVTLLEANRAKNLAITLRKAGRS 105
Query: 961  LPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDK---EKLGKCEQFFLEL 1017
              E+ R++   +   +  D VE L++F PT+ E+ LL+ Y  ++   E+L   ++F L  
Sbjct: 106  AEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYERERQPLEELAAEDRFMLLF 165
Query: 1018 MKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNAL 1077
             KV R+  ++   +F   F   +  L   LN + +A+  V++S KL+++++ IL+LGN +
Sbjct: 166  SKVERLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYM 225
Query: 1078 NQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPA 1137
            N  + RGA  GF+L SL  L DT++ + KMTL+H++   + +K PEL +F ++L  +E A
Sbjct: 226  N-SSKRGAVYGFKLQSLDLLLDTKSTDRKMTLLHFIALTVKEKYPELANFWQELHFVEKA 284
Query: 1138 SKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASL 1197
            + + L+ +  +++ L +G+E + +E S+ +N          +LR FL   E ++  L   
Sbjct: 285  AAVSLENVLLDVKELGRGMELIRRECSIHDNS---------VLRNFLSTNEGKLDKLQRD 335
Query: 1198 YSAVGRNVDALILYFGEDPARCP 1220
                    +A++ YFGE P   P
Sbjct: 336  AKTAEEAYNAVVRYFGESPKTTP 358

>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy Terminal Fragments Of Mdia1 Length = 467

Iteration: 1
 Score =  129 bits (323), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 148/284 (52%), Gaps = 6/284 (2%)
Query: 943  DHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTG 1002
            D + A N  I L   ++P  E+   +L + ++ +    ++NLIK  P  E++ +L     
Sbjct: 103  DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 162
Query: 1003 DKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAK 1062
            + + L + EQF + +  VPR+  +L    FK+QF  QV +++  +  V +A E++R S  
Sbjct: 163  EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 222
Query: 1063 LRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLP 1122
               +++  L +GN +N G+    A GF +  L KL DT++ + KMTL+H+L ++  +  P
Sbjct: 223  FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHP 282
Query: 1123 ELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGL---EKVVQELSMSENDGAISENFSKI 1179
            E+L F ++L  +E AS++  + L + +  + K +   E+ VQ    + ++    + F + 
Sbjct: 283  EVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDE---KDKFVEK 339
Query: 1180 LREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQ 1223
            +  F++ A+ +   L  ++S +      L  YF  DP +   E+
Sbjct: 340  MTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEE 383

>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure Length = 457

Iteration: 1
 Score =  127 bits (319), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 148/284 (52%), Gaps = 6/284 (2%)
Query: 943  DHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTG 1002
            D + A N  I L   ++P  E+   +L + ++ +    ++NLIK  P  E++ +L     
Sbjct: 84   DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 143
Query: 1003 DKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAK 1062
            + + L + EQF + +  VPR+  +L    FK+QF  QV +++  +  V +A E++R S  
Sbjct: 144  EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 203
Query: 1063 LRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLP 1122
               +++  L +GN +N G+    A GF +  L KL DT++ + KMTL+H+L ++  +  P
Sbjct: 204  FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHP 263
Query: 1123 ELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGL---EKVVQELSMSENDGAISENFSKI 1179
            E+L F ++L  +E AS++  + L + +  + K +   E+ VQ    + ++    + F + 
Sbjct: 264  EVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDE---KDKFVEK 320
Query: 1180 LREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQ 1223
            +  F++ A+ +   L  ++S +      L  YF  DP +   E+
Sbjct: 321  MTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEE 364

>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1 Length = 340

Iteration: 1
 Score =  127 bits (319), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 148/284 (52%), Gaps = 6/284 (2%)
Query: 943  DHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTG 1002
            D + A N  I L   ++P  E+   +L + ++ +    ++NLIK  P  E++ +L     
Sbjct: 13   DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 72
Query: 1003 DKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAK 1062
            + + L + EQF + +  VPR+  +L    FK+QF  QV +++  +  V +A E++R S  
Sbjct: 73   EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 132
Query: 1063 LRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLP 1122
               +++  L +GN +N G+    A GF +  L KL DT++ + KMTL+H+L ++  +  P
Sbjct: 133  FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHP 192
Query: 1123 ELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGL---EKVVQELSMSENDGAISENFSKI 1179
            E+L F ++L  +E AS++  + L + +  + K +   E+ VQ    + ++    + F + 
Sbjct: 193  EVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDE---KDKFVEK 249
Query: 1180 LREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQ 1223
            +  F++ A+ +   L  ++S +      L  YF  DP +   E+
Sbjct: 250  MTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEE 293

>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A Tethered-Dimer Architecture Length = 410

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 139/320 (43%), Gaps = 50/320 (15%)
Query: 870  KKLKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQR 929
            KKLK LHW KL      S+W     +G+A K  + D+ E        + + EK     + 
Sbjct: 5    KKLKQLHWEKLD-CTDNSIWG----TGKAEKFAD-DLYE-----KGVLADLEKAFAAREI 53
Query: 930  VPRGPQSDKVQLI--DHRRAYNCEI-MLSKVKVPLPELMRSVLALEDSAIDADQVENLIK 986
                 +  K+  +  D  + +   + M S + V   +L++ +L  +    D  Q  ++++
Sbjct: 54   KSLASKEFKITFLSRDISQQFGINLHMYSSLSVA--DLVKKILNCDR---DFLQTPSVVE 108
Query: 987  FCPTKE----EMDLLKGYT-------------------GDKEKLGKCEQFFLELMKVPRV 1023
            F    E     ++L + Y                     D   L + +Q +L+LM    +
Sbjct: 109  FLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLM--VNL 166
Query: 1024 ES----KLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQ 1079
            ES    ++R  +    +  + ++L + L  V+ A   ++ S  LR +   IL++GN +N 
Sbjct: 167  ESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMND 226
Query: 1080 GTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASK 1139
             + +  A GF+L +L +LT  +   N MT ++Y+ K++    P   DF  +L  +    K
Sbjct: 227  TSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVK 284
Query: 1140 IQLKFLAEEMQALSKGLEKV 1159
            + ++ L  + +  S+ +  V
Sbjct: 285  VSIEQLVNDCKDFSQSIVNV 304

>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin Length = 443

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 1003 DKEKLGKCEQFFLELMKVPRVES----KLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVR 1058
            D   L + +Q +L+LM    +ES    ++R  +    +  + ++L + L  V+ A   ++
Sbjct: 177  DPNDLQRADQIYLQLM--VNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQ 234
Query: 1059 NSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLA 1118
             S  LR +   IL++GN +N  + +  A GF+L +L +LT  +   N MT ++Y+ K++ 
Sbjct: 235  ESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVR 292
Query: 1119 DKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKV 1159
               P   DF  +L  +    K+ ++ L  + +  S+ +  V
Sbjct: 293  LNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNV 333

>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A Flexibly Tethered Dimer Architecture Length = 411

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 1003 DKEKLGKCEQFFLELMKVPRVES----KLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVR 1058
            D   L + +Q +L+LM    +ES    ++R  +    +  + ++L + L  V+ A   ++
Sbjct: 154  DPNDLQRADQIYLQLM--VNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQ 211
Query: 1059 NSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLA 1118
             S  LR +   IL++GN +N  + +  A GF+L +L +LT  +   N MT ++Y+ K++ 
Sbjct: 212  ESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVR 269
Query: 1119 DKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKV 1159
               P   DF  +L  +    K+ ++ L  + +  S+ +  V
Sbjct: 270  LNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNV 310

>pdb|3N0A|A Chain A, Crystal Structure Of Auxilin (40-400) Length = 361

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 102/236 (43%), Gaps = 30/236 (12%)
Query: 108 RSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELL 167
           R+  +WL     NV ++HC   G    + ++ A+ I+   YS     + ++Y + P   L
Sbjct: 104 RNMYNWLLQNPKNVCVVHC-LDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGL 162
Query: 168 QLLSPLNPVPSQLRYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQ-GGCRPIFR 226
                    PS  RYL Y+        + P  + LT+  + +  +P F+ Q  GCRP   
Sbjct: 163 S--------PSHRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPVPFFNKQRNGCRPYC- 213
Query: 227 IYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDD 286
               D  +   +    +Y+T    + ++ Y+  + ++  I ++  +QGDVV+    L   
Sbjct: 214 ----DVLIGETK----IYTTCADFERMKEYRVQDGKIF-IPLSITVQGDVVVSMYHLRST 264
Query: 287 LE-------REEMMFRVVFNTAFI--RSNILMLNLDEVDILWNAKELFPKEFRAEI 333
           +            +F++ F+T FI   + +L     E+D   +  E +P+ F+  +
Sbjct: 265 IGSRLQAKVTNTQIFQLQFHTGFIPLDTTVLKFTKPELDAC-DVPEKYPQLFQVTL 319

>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor Length = 324

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 27/227 (11%)
Query: 79  SEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFML 138
           ++F+  +  YP +    P L  E+I  F    + WLS   ++V  +HC + G      M+
Sbjct: 73  AKFNCRVAQYPFEDHNPPQL--ELIKPFCEDLDQWLSEDDNHVAAIHC-KAGKGRTGVMI 129
Query: 139 AALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSR--RNVVSEWP 196
            A L++R ++    + LD       R+   +      +PSQ RY+ Y S   +N +   P
Sbjct: 130 CAYLLHRGKFLKAQEALDFYGEVRTRDKKGVT-----IPSQRRYVYYYSYLLKNHLDYRP 184
Query: 197 PLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTY 256
               AL    ++  +IP F G G C P         FV      K+  S S  ++    +
Sbjct: 185 V---ALLFHKMMFETIPMFSG-GTCNP--------QFVVCQLKVKIYSSNSGPTRREDKF 232
Query: 257 KQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNTAFI 303
              E       +  C  GD+ +E     + + +++ MF    NT FI
Sbjct: 233 MYFE---FPQPLPVC--GDIKVEFFHKQNKMLKKDKMFHFWVNTFFI 274

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1237
3obv_E	457	Protein diaphanous homolog 1; autoinhibition, acti	1e-123
2j1d_G	483	DAAM1, disheveled-associated activator of morphoge	1e-116
1v9d_A	340	Diaphanous protein homolog 1; helix bundle, protei	1e-111
1ux5_A	411	BNI1 protein; structural protein, FH2 actin cytosk	1e-105
3n0a_A	361	Tyrosine-protein phosphatase auxilin; phosphatase-	1e-50
1d5r_A	324	Phosphoinositide phosphotase PTEN; C2 domain, phos	3e-49
3v0d_A	339	Voltage-sensor containing phosphatase; PTP, hydrol	1e-48
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-14
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-12
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	6e-12
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-13
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	6e-08
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-07
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	4e-07
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	4e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-09
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	6e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	9e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	7e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	5e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	7e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-08
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-04
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	8e-07
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	5e-07
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	9e-06
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	2e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	2e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	4e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	2e-04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	3e-04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	3e-04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	3e-04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	6e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	7e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	9e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	3e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	9e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	7e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	5e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	7e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	9e-06
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	2e-05
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	1e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	5e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	3e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	3e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	7e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	4e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	2e-04
3u3p_A	313	Tumor necrosis factor receptor superfamily member;	4e-04
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	5e-04
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	6e-04

>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Length = 457

 Score =  387 bits (995), Expect = e-123
 Identities = 86/361 (23%), Positives = 175/361 (48%), Gaps = 9/361 (2%)

Query: 869  TKKLKPLHWLKL--TRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSA----TIPNSEK 922
              +L+  +W K       Q   W + +   E         ++L   FSA    +    ++
Sbjct: 7    EVQLRRPNWSKFVAEDLSQDCFWTKVK---EDRFENNELFAKLTLAFSAQTKTSKAKKDQ 63

Query: 923  GGKPNQRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVE 982
             G   ++  +  +  +++++D + A N  I L   ++P  E+   +L + ++ +    ++
Sbjct: 64   EGGEEKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQ 123

Query: 983  NLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSD 1042
            NLIK  P  E++ +L     + + L + EQF + +  VPR+  +L    FK+QF  QV +
Sbjct: 124  NLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVEN 183

Query: 1043 LRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRA 1102
            ++  +  V +A E++R S     +++  L +GN +N G+    A GF +  L KL DT++
Sbjct: 184  IKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKS 243

Query: 1103 RNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQE 1162
             + KMTL+H+L ++  +  PE+L F ++L  +E AS++  + L + +  + K +  V ++
Sbjct: 244  ADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERD 303

Query: 1163 LSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFE 1222
            +          + F + +  F++ A+ +   L  ++S +      L  YF  DP +   E
Sbjct: 304  VQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVE 363

Query: 1223 Q 1223
            +
Sbjct: 364  E 364

>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483

 Score =  369 bits (950), Expect = e-116
 Identities = 94/369 (25%), Positives = 197/369 (53%), Gaps = 18/369 (4%)

Query: 869  TKKLKPLHWLKL-TRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSA----------TI 917
            T  LK  +W KL    ++G++W E     +      +D+ +LE  FSA          + 
Sbjct: 12   TNALKSFNWSKLPENKLEGTVWTEID---DTKVFKILDLEDLERTFSAYQRQQDFFVNSN 68

Query: 918  PNSEKGGKPNQRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDS-AI 976
               ++    +  +    +  ++ +ID RRA NC I+LS++K+   E+ R++L +++   +
Sbjct: 69   SKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDL 128

Query: 977  DADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQF 1036
              D +E L+KF P K ++DLL+ +  + +++ K ++F  E+ ++   + +L+   FK +F
Sbjct: 129  PKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKF 188

Query: 1037 HTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLK 1096
              +V++++  +  + S +E+V  S  L+++++ +L+ GN +N+G  RG A GF++ SL K
Sbjct: 189  AERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNK 247

Query: 1097 LTDTRAR-NNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKG 1155
            + DT++  +  +TL+HYL  ++ +K P +L+ +E+L  +  A+K+ +  L +E+  L  G
Sbjct: 248  IADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSG 307

Query: 1156 LEKVVQELSMSENDGA-ISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGE 1214
            L+ V  EL   ++      + F  ++ +F+  A      +  L +         + +FGE
Sbjct: 308  LKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGE 367

Query: 1215 DPARCPFEQ 1223
            +  +   ++
Sbjct: 368  EAGKIQPDE 376

>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Length = 340

 Score =  351 bits (902), Expect = e-111
 Identities = 75/288 (26%), Positives = 150/288 (52%)

Query: 936  SDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMD 995
              +++++D + A N  I L   ++P  E+   +L + ++ +    ++NLIK  P  E++ 
Sbjct: 6    VKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLK 65

Query: 996  LLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAE 1055
            +L     + + L + EQF + +  VPR+  +L    FK+QF  QV +++  +  V +A E
Sbjct: 66   MLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACE 125

Query: 1056 QVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCK 1115
            ++R S     +++  L +GN +N G+    A GF +  L KL DT++ + KMTL+H+L +
Sbjct: 126  ELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAE 185

Query: 1116 VLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISEN 1175
            +  +  PE+L F ++L  +E AS++  + L + +  + K +  V +++          + 
Sbjct: 186  LCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDK 245

Query: 1176 FSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQ 1223
            F + +  F++ A+ +   L  ++S +      L  YF  DP +   E+
Sbjct: 246  FVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEE 293

>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Length = 411

 Score =  338 bits (868), Expect = e-105
 Identities = 71/378 (18%), Positives = 145/378 (38%), Gaps = 38/378 (10%)

Query: 869  TKKLKPLHWLKLTRAVQGSLWAEAQKSGEASK-APEIDMSELENLFSATIPNSEKGGKPN 927
             KKLK LHW KL      S+W   +    A     +  +++LE  F+A    S    +  
Sbjct: 6    HKKLKQLHWEKL-DCTDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKRK- 63

Query: 928  QRVPRGPQSDKVQLIDHRRAYNCEIMLSKVK-VPLPELMRSVLALEDSAIDADQVENLI- 985
                      K+  +    +    I L     + + +L++ +L  +   +    V   + 
Sbjct: 64   ------EDLQKITFLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLS 117

Query: 986  -------------KFCPTKEEMDLLKGYT------GDKEKLGKCEQFFLELMK--VPRVE 1024
                          + P   + + ++          D   L + +Q +L+LM        
Sbjct: 118  KSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWG 177

Query: 1025 SKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARG 1084
            S++R  +    +  + ++L + L  V+ A   ++ S  LR +   IL++GN +N  + + 
Sbjct: 178  SRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQ- 236

Query: 1085 AAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKF 1144
             A GF+L +L +LT  +   N MT ++Y+ K++    P   DF  +L  +    K+ ++ 
Sbjct: 237  -AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQ 295

Query: 1145 LAEEMQALSKGLEKVVQELSMSENDGAISEN----FSKILREFLRFAEAEVRTLASLYSA 1200
            L  + +  S+ +  V + + +     +   +            L  A  +   L      
Sbjct: 296  LVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKL 355

Query: 1201 VGRNVDALILYFGEDPAR 1218
                 ++L+  +GED   
Sbjct: 356  TIMEFESLMHTYGEDSGD 373

>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2 domain, hydrolase; 2.20A {Bos taurus} Length = 361

 Score =  182 bits (462), Expect = 1e-50
 Identities = 67/361 (18%), Positives = 137/361 (37%), Gaps = 43/361 (11%)

Query: 19  ISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVL 78
           ++ R+ V    F  D+ +   ++  +  I   L        + V+N   +  ++      
Sbjct: 27  VTSRIIV--MSFPLDSVDIG-FRNQVDDIRSFLDSR-HLDHYTVYNLSPKSYRT------ 76

Query: 79  SEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFML 138
           ++F   + +        P L    +    R+  +WL     NV ++HC   G    + ++
Sbjct: 77  AKFHSRVSECSWPIRQAPSL--HNLFAVCRNMYNWLLQNPKNVCVVHC-LDGRAASSILV 133

Query: 139 AALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSRRNVVSEWPPL 198
            A+ I+   YS     + ++Y + P   L         PS  RYL Y+        + P 
Sbjct: 134 GAMFIFCNLYSTPGPAVRLLYAKRPGIGLS--------PSHRRYLGYMCDLLADKPYRPH 185

Query: 199 DRALTLDCVILRSIPNFDGQ-GGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYK 257
            + LT+  + +  +P F+ Q  GCRP   +   +           +Y+T    + ++ Y+
Sbjct: 186 FKPLTIKSITVSPVPFFNKQRNGCRPYCDVLIGE---------TKIYTTCADFERMKEYR 236

Query: 258 QAECELVKIDINCCIQGDVVLECISLNDDLE-------REEMMFRVVFNTAFI--RSNIL 308
             + ++  I ++  +QGDVV+    L   +            +F++ F+T FI   + +L
Sbjct: 237 VQDGKIF-IPLSITVQGDVVVSMYHLRSTIGSRLQAKVTNTQIFQLQFHTGFIPLDTTVL 295

Query: 309 MLNLDEVDILWNAKELFPKEFRAEILFSEMD-AAAAVVAADVSCFEEKGGLPVEAFAKVH 367
                E+D   +  E +P+ F+  +            +      +  K   P   F+   
Sbjct: 296 KFTKPELDA-CDVPEKYPQLFQVTLDVELQPHDKVMELTPPWEHYCTKDVNPSILFSSHQ 354

Query: 368 E 368
           E
Sbjct: 355 E 355

>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol, hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1 c.45.1.1 Length = 324

 Score =  177 bits (449), Expect = 3e-49
 Identities = 66/348 (18%), Positives = 127/348 (36%), Gaps = 45/348 (12%)

Query: 5   RRLFFRKPPDG-LLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVF 63
           +R +     D  L  I   +             E  Y+  I  ++  L     +  + ++
Sbjct: 7   KRRYQEDGFDLDLTYIYPNIIAMGFPAER---LEGVYRNNIDDVVRFLDSKHKNH-YKIY 62

Query: 64  NFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLM 123
           N   E          ++F+  +  YP +    P   +E+I  F    + WLS   ++V  
Sbjct: 63  NLCAERHYDT-----AKFNCRVAQYPFEDHNPP--QLELIKPFCEDLDQWLSEDDNHVAA 115

Query: 124 MHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYL 183
           +HC + G      M+ A L++R ++    + LD       R+          +PSQ RY+
Sbjct: 116 IHC-KAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRD-----KKGVTIPSQRRYV 169

Query: 184 QYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVL 243
            Y S   + +       AL    ++  +IP F G G C P F +               +
Sbjct: 170 YYYSYL-LKNHLDYRPVALLFHKMMFETIPMFSG-GTCNPQFVVCQLK---------VKI 218

Query: 244 YSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNTAFI 303
           YS++         ++ +    +      + GD+ +E     + + +++ MF    NT FI
Sbjct: 219 YSSNSGPT----RREDKFMYFEFPQPLPVCGDIKVEFFHKQNKMLKKDKMFHFWVNTFFI 274

Query: 304 RSN----------ILMLNLDEVDILWNAK--ELFPKEFRAEILFSEMD 339
                        +L L  +++D     K    F   F+ ++ F++  
Sbjct: 275 PGPEEVDNDKEYLVLTLTKNDLDKANKDKANRYFSPNFKVKLYFTKTV 322

>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4; 1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A* 3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A Length = 339

 Score =  175 bits (445), Expect = 1e-48
 Identities = 52/328 (15%), Positives = 118/328 (35%), Gaps = 27/328 (8%)

Query: 19  ISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVL 78
           +++ V   +   +     +  ++  IG +    +   PD  F ++N   E          
Sbjct: 30  VTDHVIAMSFPSS---GRQSLFRNPIGEVSRFFKTKHPDK-FRIYNLCSERG-----YDE 80

Query: 79  SEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFML 138
           ++FD  +          P L    +  F+   + W++    +V+ +H  +GG      ++
Sbjct: 81  TKFDNHVYRVMIDDHNVPTLVD--LLKFIDDAKVWMTSDPDHVIAIHS-KGGKGRTGTLV 137

Query: 139 AALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSR-RNVVSEWPP 197
           ++ L+   ++    + L+    +     +  +       SQ+RY+ Y  + +       P
Sbjct: 138 SSWLLEDGKFDTAKEALEYFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLP 197

Query: 198 LDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYK 257
             + L +  V + +I       G     +I             +VL              
Sbjct: 198 PMKKLKVTGVTITAIQGVGRGNGSDLSMQIV--------SERQEVLLCKFAEGYNCALQY 249

Query: 258 QAECELVKIDINCCI--QGDVVLECISLNDDLER--EEMMFRVVFNTAFIRSNILMLNLD 313
            A  + V  ++  C    GD+ +  +S +  L R  +   F   FNT+ +  + + L  +
Sbjct: 250 DATDDCVTCEVKNCPVLAGDIKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKRE 309

Query: 314 EVDILWNAKE--LFPKEFRAEILFSEMD 339
           E+D     K   ++   F  ++ FS+ +
Sbjct: 310 EIDNPHKKKTWKIYRDNFTVKLTFSDAE 337

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 78.7 bits (193), Expect = 9e-15
 Identities = 78/467 (16%), Positives = 140/467 (29%), Gaps = 144/467 (30%)

Query: 823  PVPPPPPIAKVVSKTGVASPVPAPPSIS----PSSGKGRLSRTISS-RSHQTKKLKP--L 875
             V    P  K+  +  +    PA  ++       SGK  +   +    S++ +      +
Sbjct: 130  NVSRLQPYLKL--RQALLELRPAK-NVLIDGVLGSGKTWV--ALDVCLSYKVQCKMDFKI 184

Query: 876  HWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQRVPRGPQ 935
             WL L                    +PE  +  L+ L     PN       +  +     
Sbjct: 185  FWLNLKN----------------CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 936  SDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALED----SAIDADQVENLIKF---C 988
            S + +L   RR     ++ SK   P       +L L +     A +A        F   C
Sbjct: 229  SIQAEL---RR-----LLKSK---PYE---NCLLVLLNVQNAKAWNA--------FNLSC 266

Query: 989  PT------KEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSD 1042
                    K+  D L   T     L                +    +   K     +  D
Sbjct: 267  KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-------DEVKSLLL-KY-LDCRPQD 317

Query: 1043 LRS-----SLNVVNSAAEQVR------------NSAKLRRIMQTILSLGNALNQGTARGA 1085
            L       +   ++  AE +R            N  KL  I+++ L   N L     R  
Sbjct: 318  LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL---NVLEPAEYRKM 374

Query: 1086 ----AIGFRLDS------LLKLTDTRARNNKMTLMHYLCKV-LADKLPELLDFSEDLTSL 1134
                ++ F   +      L  +     +++ M +++ L K  L +K        E   S+
Sbjct: 375  FDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-----QPKESTISI 428

Query: 1135 EPASKIQLKFLAEEMQALSKGLEKVVQ-----------ELSMSENDGAI----------- 1172
             P+  ++LK   E   AL +    +V            +L     D              
Sbjct: 429  -PSIYLELKVKLENEYALHR---SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 1173 -----SENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALI---LY 1211
                    F  +  +F RF E ++R  ++ ++A G  ++ L     Y
Sbjct: 485  EHPERMTLFRMVFLDF-RFLEQKIRHDSTAWNASGSILNTLQQLKFY 530

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.7 bits (180), Expect = 3e-13
 Identities = 104/640 (16%), Positives = 194/640 (30%), Gaps = 210/640 (32%)

Query: 4   LRRLFFRKPPDGLLEISER-VYVF-------NCCFTTDAWEEE------DYKKYIGGIIG 49
             RLF       LL   E  V  F       N  F     + E        + YI     
Sbjct: 64  TLRLF-----WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI----- 113

Query: 50  QLREHSP---DSQ-FLVFNF-REEETKSLMANVLSEFD----ITI--MDYPRQYEGC--P 96
              +      D+Q F  +N  R +    L    L E      + I  +       G    
Sbjct: 114 --EQRDRLYNDNQVFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGV------LGSGKT 164

Query: 97  LLTMEVIHHFLRSTE---------SWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQ 147
            + ++V      S +          WL+L         C      VL  ML  L      
Sbjct: 165 WVALDV----CLSYKVQCKMDFKIFWLNLKN-------CNSPE-TVLE-MLQKL------ 205

Query: 148 YSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSRRNVVSEWPPLDRALTLDCV 207
                  +D  +         +   ++ + ++LR L          +  P +  L    +
Sbjct: 206 ----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL---------KSKPYENCL----L 248

Query: 208 ILRSIPN------FDGQGGCRPIFRIYGQDPFVANDRSAKVLY--STSKRSKAVRTYKQA 259
           +L ++ N      F+    C+ +  +  +   V +  SA      S    S  + T  + 
Sbjct: 249 VLLNVQNAKAWNAFN--LSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTL-TPDEV 303

Query: 260 ECELVKIDINCCIQGDVVLECISLNDDLEREEM------------MFRVVFNTAFIRSNI 307
           +  L+K            L+C     DL RE +              R    T     N 
Sbjct: 304 KSLLLK-----------YLDCRP--QDLPREVLTTNPRRLSIIAESIRDGLATW---DNW 347

Query: 308 LMLNLDEVDILWNA--KELFPKEFRAEILFSEMDAAAAVVAADVSCFEEKGGLPVEAFAK 365
             +N D++  +  +    L P E+R   +F  +    +V       F     +P      
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRK--MFDRL----SV-------FPPSAHIP----TI 390

Query: 366 VHEIFSHVDWLDHGSDFALNVLQHINATNLIQEMSDTESPPSAGICSLLQELSPR----- 420
           +  +     W D      + V+  ++  +L+++        +  I S+  EL  +     
Sbjct: 391 LLSLI----WFDVIKSDVMVVVNKLHKYSLVEKQPK---ESTISIPSIYLELKVKLENEY 443

Query: 421 -------DHQDKKSQSELDNSPKTSPKDY---------------------RNMIIN---- 448
                  DH +     + D+        Y                     R + ++    
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 449 ASNLIQETSDSGSPPSMIISSLLQELSPRGHQHKKTHVVDEDSTKSSLPSAVKTQSVLLP 508
              +  +++   +  S  I + LQ+L     +  K ++ D D     L +A+      LP
Sbjct: 504 EQKIRHDSTAWNASGS--ILNTLQQL-----KFYKPYICDNDPKYERLVNAILD---FLP 553

Query: 509 KMSPDTDESKANEEPQDPRNALQVCNQSVDNFQKTSKSSQ 548
           K+  +   SK  +  +    AL   ++++  F++  K  Q
Sbjct: 554 KIEENLICSKYTDLLR---IALMAEDEAI--FEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 1e-09
 Identities = 81/473 (17%), Positives = 133/473 (28%), Gaps = 141/473 (29%)

Query: 218 QGGCRPIFRIYGQDPFVAN-DRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDV 276
           Q   + I  ++ +D FV N D             K++    + E +     I   +  D 
Sbjct: 15  QYQYKDILSVF-EDAFVDNFD-----CKDVQDMPKSI--LSKEEID----HI--IMSKDA 60

Query: 277 VLECISLNDDLER--EEMMFRVV-----FNTAFI----------RSNILMLNLDEVDILW 319
           V   + L   L    EEM+ + V      N  F+           S +  + +++ D L+
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 320 NAKELFPKEF--RAEIL------FSEMDAAAAVV------------AADVSCFEEKGGLP 359
           N  ++F K    R +          E+  A  V+            A DV C        
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-CLSY----- 174

Query: 360 VEAFAKVHEIFS-HVDWLDHGSDF-------ALNVLQHINATNLIQEMSDTESPPSAGIC 411
                KV       + WL+  +          L  L +    N     SD  S     I 
Sbjct: 175 -----KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR-SDHSSNIKLRIH 228

Query: 412 SLLQELSP--RDHQDKKSQSELDN--SPKTSPKDYRNMIINASN-----LIQETSDSGSP 462
           S+  EL    +    +     L N  + K           NA N     L+  T      
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAK---------AWNAFNLSCKILLT-TRFKQ-- 276

Query: 463 PSMIISSL--LQELSPRGHQHKKTHVVDE---------DSTKSSLPSAVKTQSVLLPKM- 510
              +   L            H  T   DE         D     LP  V T +     + 
Sbjct: 277 ---VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 511 ------SPDT----------------DESKANEEPQDPRNALQVCNQSVDNFQKTSK-SS 547
                    T                + S    EP + R        SV  F  ++   +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--SV--FPPSAHIPT 389

Query: 548 QTTS-LSCNSV-QVSSLSVSGHHDASLAPCH-KPL---LHDHALSVSAEVTHQ 594
              S +  + +     + V+  H  SL     K     +    L +  ++ ++
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 5e-08
 Identities = 77/544 (14%), Positives = 165/544 (30%), Gaps = 152/544 (27%)

Query: 731  PPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIR-------- 782
            P + T ++    D  ++                        +P LK + A+         
Sbjct: 105  PSMMTRMYIEQRDRLYNDNQV-----------FAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 783  -----AGPPPPPPPPLYSGSS--ASSTVSSPTIPLAPPPP----SLSSNSSPVPPPPPIA 831
                  G          SG +  A     S  +           +L + +SP      + 
Sbjct: 154  LIDGVLG----------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 832  KV---VSKTGVASP-VPAPPSISPSSGKGRLSRTISSRSHQTKKL------KPLHW---- 877
            K+   +     +     +   +   S +  L R + S+ ++   L          W    
Sbjct: 204  KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 878  -----LKLTRAVQGSLWAEAQKSGEASKAPEIDM---SELENLFSATIPNSEKGGKPNQR 929
                 L  TR  Q + +  A  +   S           E+++L    + +      P + 
Sbjct: 264  LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQDLPREV 322

Query: 930  VPRGPQ---------SDKVQLIDHRRAYNCEIMLSKVKVPL----PELMRSV---LAL-- 971
            +   P+          D +   D+ +  NC+ + + ++  L    P   R +   L++  
Sbjct: 323  LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 972  EDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFS 1031
              + I    +  +       + M ++           K  ++ L + K P+ ES + + S
Sbjct: 383  PSAHIPTILLSLIWFDVIKSDVMVVVN----------KLHKYSL-VEKQPK-ESTISIPS 430

Query: 1032 FKIQFHTQVSDL----RSSLNVVN---------------------------SAAEQVRNS 1060
              ++   ++ +     RS ++  N                              E     
Sbjct: 431  IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490

Query: 1061 AKLRRIMQTILSLGNAL-NQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAD 1119
               R +      L   + +  TA  A+ G  L++L +L   +          Y+C    D
Sbjct: 491  TLFRMVFLDFRFLEQKIRHDSTAWNAS-GSILNTLQQLKFYKP---------YIC----D 536

Query: 1120 KLPELLDFSEDLTSLEPASKIQLKFL--AEEMQALSKGLEKVVQELSMSENDGAISENFS 1177
              P+   +   + ++       L FL   EE    SK  + +++   M+E++    E   
Sbjct: 537  NDPK---YERLVNAI-------LDFLPKIEENLICSKYTD-LLRIALMAEDEAIFEEAHK 585

Query: 1178 KILR 1181
            ++ R
Sbjct: 586  QVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 1e-06
 Identities = 63/326 (19%), Positives = 102/326 (31%), Gaps = 78/326 (23%)

Query: 928  QRVPRGPQSDKVQLIDHR-RAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIK 986
            +   R P       I+ R R YN   + +K  V   +     L L  + ++    +N++ 
Sbjct: 99   KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP---YLKLRQALLELRPAKNVL- 154

Query: 987  FCPTKEEMDLLKGYTGDKEKLGK-CEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRS 1045
                      + G  G     GK      + L  V           FKI +         
Sbjct: 155  ----------IDGVLG----SGKTW----VALD-VCLSYKVQCKMDFKIFW--------- 186

Query: 1046 SLNV--VNSAAEQVRNSAKL-RRIMQTILSLGNALNQGTARGAAIGFRL----------D 1092
             LN+   NS    +    KL  +I     S  +  +    R  +I   L          +
Sbjct: 187  -LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 1093 SLLKLTDTRARN--NKMTLMHYLCKVL--------ADKL-------PELLDFSEDLTSLE 1135
             LL L + +     N   L    CK+L         D L         L   S  LT  E
Sbjct: 246  CLLVLLNVQNAKAWNAFNLS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 1136 PASKIQLKFLAEEMQALSKGLEKVV-QELSM----SENDGAISENFSKILREFLRFAEAE 1190
                + LK+L    Q L + +     + LS+      +  A  +N+  +  +  +     
Sbjct: 303  -VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD--KLTTII 359

Query: 1191 VRTLASLYSAVGRNV-DALILYFGED 1215
              +L  L  A  R + D L + F   
Sbjct: 360  ESSLNVLEPAEYRKMFDRLSV-FPPS 384

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 78.6 bits (193), Expect = 1e-14
 Identities = 62/294 (21%), Positives = 98/294 (33%), Gaps = 21/294 (7%)

Query: 534  NQSVDNFQKTSKSSQTTSLSCNSVQVSSLSVSGHHDASLAPCHKPLLHDHALSVSAEVTH 593
             Q +   +       T   + + +  + L V        +P      +D           
Sbjct: 1456 EQKITEIEDGQDGGVTPYSNESGLVNADLDVKDE--LMFSPLVDSGSNDAMAGGFTAYGG 1513

Query: 594  QIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPA-PRPSIASSASKVPSPPPPPQ 652
                    P      +      G+ S  FSPT+P   P  P  S  S +    SP   P 
Sbjct: 1514 ADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPT 1573

Query: 653  LPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAP 712
             P   +S + P++ P    S S+       S  +P  +P + S    S +   T+P  +P
Sbjct: 1574 SPS--YSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1628

Query: 713  ATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPK 772
                S    P  P   PT P  +P       +   +P+ PA + T S + SP +P   P 
Sbjct: 1629 T---SPSYSPTSPSYSPTSPSYSPT------SPSYSPTSPAYSPT-SPSYSPTSPSYSPT 1678

Query: 773  PPLKEQSAIRAGPPPP---PPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSP 823
             P    ++    P  P   P  P YS +S   +  SP           + N + 
Sbjct: 1679 SPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 72.0 bits (176), Expect = 1e-12
 Identities = 55/281 (19%), Positives = 81/281 (28%), Gaps = 29/281 (10%)

Query: 579  LLHDHALSVSAEVTHQIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIA 638
            ++ D    V      +I       D                 + S             + 
Sbjct: 1443 VMIDEESLVKYMPEQKITEIEDGQDG----------GVTPYSNESGLVNADLDVKDELMF 1492

Query: 639  SSASKVPSPPP-PPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSG 697
            S      S          +  +    A  P                   P       SS 
Sbjct: 1493 SPLVDSGSNDAMAGGFTAYGGADYGEATSPFG------------AYGEAPTSPGFGVSSP 1540

Query: 698  TNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDAS-FSTPSPPASTV 756
              S TS + +P     +  S    P  P   PT P  +P     +  S   +P+ P+ + 
Sbjct: 1541 GFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1600

Query: 757  TLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIP-LAPPPP 815
            T S + SP +P   P  P    ++    P  P   P     S +S   SPT P  +P  P
Sbjct: 1601 T-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1659

Query: 816  SLSSNSSPVPPPPPIAKVVSKTGVA---SPVPAPPSISPSS 853
            + S  S    P  P     S +      S  P  P+ SP+S
Sbjct: 1660 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTS 1700

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 69.4 bits (169), Expect = 6e-12
 Identities = 66/295 (22%), Positives = 103/295 (34%), Gaps = 37/295 (12%)

Query: 581  HDHALSVSAEVTHQIPASPAIPDPNLASSCKHEAA-GLKSDSFSPTTPPPPPAPRPSIAS 639
             D  ++  +  +  + A   + D  + S      +    +  F+               +
Sbjct: 1466 QDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGA 1525

Query: 640  SASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPE--TSSSG 697
                  SP      P   FS + P + P T  + S       P+S +  P     + +S 
Sbjct: 1526 YGEAPTSPGFGVSSPG--FSPTSPTYSP-TSPAYS-------PTSPSYSPTSPSYSPTSP 1575

Query: 698  TNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVT 757
            + S TS S +P     +  S    P  P   PT P            S+S  SP  S   
Sbjct: 1576 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP------------SYSPTSPSYSPT- 1622

Query: 758  LSTTSSPPTPPPPPKPPLKEQSAIRAGPPPP---PPPPLYSGSSASSTVSSPTIPLAPPP 814
             S + SP +P   P  P    ++    P  P   P  P YS +S S + +SP+     P 
Sbjct: 1623 -SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1681

Query: 815  PSLSSNSSPVPPPP--PIAKVVSKTGVASP--VPAPPSISPSSGKGRLSRTISSR 865
             S +S S     P   P +   S T   SP   P  P+ SP   + + +   +SR
Sbjct: 1682 YSPTSPSYSPTSPNYSPTSPSYSPT---SPGYSPGSPAYSPKQDEQKHNENENSR 1733

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 74.0 bits (181), Expect = 3e-13
 Identities = 62/294 (21%), Positives = 87/294 (29%), Gaps = 23/294 (7%)

Query: 577  KPLLHDHALSVSAEVTHQIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPS 636
              +       +      +   +P    P + S            +FSP            
Sbjct: 1463 TAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAA---AFSPLVQGGSEGREGF 1519

Query: 637  IASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSS 696
                     SP    Q  P + S    A  P    +           S +P   P + S 
Sbjct: 1520 GDYGLLGAASPYKGVQ-SPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSY 1578

Query: 697  GTNSSTSLSTAPLPAPATAK----STFPPPPPPPPPPTPPLKTPVFNRN---------TD 743
               S +   T+P  +P +      S       P   PT P  +P              T 
Sbjct: 1579 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1638

Query: 744  ASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTV 803
             S+S  SP  S    S + SP +P   P  P    ++    P  P   P     S +S  
Sbjct: 1639 PSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1696

Query: 804  SSPTIPLAPPPPSLSSNSSPV--PPPPPIAKVVSKTGVASPVPAP--PSISPSS 853
             SPT P   P     S +SP   P  P  +         SP  +P  PS SP+S
Sbjct: 1697 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 56.6 bits (136), Expect = 6e-08
 Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 19/225 (8%)

Query: 596  PASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPP 655
              SP    P   SS      GL S S+SP++P    +P    +S +    SP   P  P 
Sbjct: 1534 VQSPGYTSP--FSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP- 1590

Query: 656  HHFSSSCPAHFP----HTKESKSHMQDRDKPSSATPLPAPETS-----SSGTNSSTSLST 706
              +S + P++ P    ++  S S+       S  +P  +P TS     +S + S TS S 
Sbjct: 1591 -SYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSY 1648

Query: 707  APLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFS-TPSPPASTVTLSTTSSPP 765
            +P     +  S    P  P   PT P  +P     +  S S +P+ P+ + T S + SP 
Sbjct: 1649 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPT 1707

Query: 766  TPPPPPKPPLKEQSAIRAGPPPP---PPPPLYSGSSASSTVSSPT 807
            +P   P  P    ++    P  P   P  P YS +S S + +SP+
Sbjct: 1708 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1752

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 54.7 bits (131), Expect = 2e-07
 Identities = 35/157 (22%), Positives = 46/157 (29%), Gaps = 13/157 (8%)

Query: 699  NSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTL 758
            N S   +   L       S  P     P   +P + +        A+FS P     +   
Sbjct: 1458 NYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFS-PLVQGGSEG- 1515

Query: 759  STTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLS 818
                          P    QS     P      P Y  +S S + SSP    +P     S
Sbjct: 1516 REGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSS 1575

Query: 819  SNSSPVPPPPPIAKVVSKTGVASPV--PAPPSISPSS 853
             + SP  P              SP   P  PS SP+S
Sbjct: 1576 PSYSPTSPS---------YSPTSPSYSPTSPSYSPTS 1603

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 53.9 bits (129), Expect = 4e-07
 Identities = 49/236 (20%), Positives = 65/236 (27%), Gaps = 26/236 (11%)

Query: 623  SPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKP 682
            +            S     +  P    P        S    A  P  +          + 
Sbjct: 1463 TAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSE-----GRE 1517

Query: 683  SSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPP--PPPPPPPTPPLKTPVFNR 740
                       S      S   ++    A +       P   P  P   T P   P    
Sbjct: 1518 GFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMP---- 1573

Query: 741  NTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSAS 800
             +  S+S  SP  S    S + SP +P   P  P    ++    P  P   P     S +
Sbjct: 1574 -SSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPT 1630

Query: 801  STVSSPTIP-LAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGK 855
            S   SPT P  +P  PS S  S    P  P           S  P  PS SP+S  
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-----------SYSPTSPSYSPTSPS 1675

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 53.5 bits (128), Expect = 4e-07
 Identities = 43/202 (21%), Positives = 61/202 (30%), Gaps = 20/202 (9%)

Query: 682  PSSATPLPAPETSSSGTNSSTS---LSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVF 738
            P   +P+       S   ++ S      +                P     +P   +P F
Sbjct: 1485 PYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSP-F 1543

Query: 739  NRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPK--P--PLKEQSAIRAGPPPPPPPPLY 794
            +      +   SP  S  +   ++SP   P  P   P  P    ++    P  P   P  
Sbjct: 1544 SSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1603

Query: 795  SGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSG 854
               SA+S   SPT P   P     S +SP   P             SP  +P S S S  
Sbjct: 1604 PSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSP------------TSPSYSPTSPSYSPT 1651

Query: 855  KGRLSRTISSRSHQTKKLKPLH 876
                S T  S S  +    P  
Sbjct: 1652 SPSYSPTSPSYSPTSPSYSPTS 1673

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 60.6 bits (146), Expect = 3e-09
 Identities = 25/162 (15%), Positives = 42/162 (25%), Gaps = 6/162 (3%)

Query: 674 SHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPL 733
           SH + R  P +        T                   +  +   PP    P       
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 734 KTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPL 793
            TP   +         +        +     P     P+ P++  + ++    P   P  
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121

Query: 794 YSGSSASSTVSSPTIPLAPP------PPSLSSNSSPVPPPPP 829
              S+A      P   L P       PP ++  + P PP   
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVI 163

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 55.2 bits (132), Expect = 1e-07
 Identities = 26/203 (12%), Positives = 38/203 (18%), Gaps = 31/203 (15%)

Query: 621 SFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRD 680
           S       P    +    ++  + P+   PPQ P                          
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAA----------------------- 38

Query: 681 KPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNR 740
              S   +  P   +  +       T                         PL  P    
Sbjct: 39  -GMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDP---- 93

Query: 741 NTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSAS 800
               ++  P  P    T       P   P    P               P  L +     
Sbjct: 94  ---NAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPP 150

Query: 801 STVSSPTIPLAPPPPSLSSNSSP 823
            T  +   P    PP      S 
Sbjct: 151 ITDLTLPPPPLVIPPERMLVPSE 173

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 54.4 bits (130), Expect = 2e-07
 Identities = 11/142 (7%), Positives = 25/142 (17%)

Query: 707 APLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPT 766
                     +    P    PP  P      + +                 L+       
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 767 PPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPP 826
                         +   P   P   +                     P+    S+ +  
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130

Query: 827 PPPIAKVVSKTGVASPVPAPPS 848
                  +    + + +P P +
Sbjct: 131 NMRPMNQLYPIDLLTELPPPIT 152

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 54.4 bits (130), Expect = 2e-07
 Identities = 22/151 (14%), Positives = 40/151 (26%), Gaps = 17/151 (11%)

Query: 716 KSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPL 775
           K  +P           PL+ P              P A+ ++      PP    P     
Sbjct: 6   KRVYPQAQLQYGQNATPLQQPA------QFMPPQDPAAAGMSYGQMGMPPQGAVPSMG-- 57

Query: 776 KEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVS 835
             Q              +   +++ + +    +PL  P   +          P       
Sbjct: 58  --QQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPL------ 109

Query: 836 KTGVASPVPAPPSISPSSGKGRLSRTISSRS 866
                 P+ AP    PS+  G+  R ++   
Sbjct: 110 -QQQQQPMAAPAYGQPSAAMGQNMRPMNQLY 139

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 54.1 bits (129), Expect = 3e-07
 Identities = 18/165 (10%), Positives = 33/165 (20%), Gaps = 6/165 (3%)

Query: 689 PAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFST 748
           P  +       +        +P    A +         PP                 F T
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQ------QQFLT 63

Query: 749 PSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTI 808
           P+       +   ++          PL + +A      P                 +   
Sbjct: 64  PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQ 123

Query: 809 PLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSS 853
           P A    ++   +   P           T +  P P         
Sbjct: 124 PSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERM 168

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 53.7 bits (128), Expect = 4e-07
 Identities = 14/147 (9%), Positives = 31/147 (21%)

Query: 708 PLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTP 767
           P       ++  P   P    P         +          + P+       T +    
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 768 PPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPP 827
                      + +     P   P  Y        + +P      P  + +         
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129

Query: 828 PPIAKVVSKTGVASPVPAPPSISPSSG 854
             +  +     +      PP I+  + 
Sbjct: 130 QNMRPMNQLYPIDLLTELPPPITDLTL 156

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 51.0 bits (121), Expect = 2e-06
 Identities = 21/205 (10%), Positives = 45/205 (21%)

Query: 624 PTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPS 683
                P   P   +                 P   +            ++  +  +   +
Sbjct: 17  GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76

Query: 684 SATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTD 743
           + +       +    + +  +         T       P   P    P        R  +
Sbjct: 77  TTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMN 136

Query: 744 ASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTV 803
             +           ++  + PP P   P   +   S +    P      L +    SS +
Sbjct: 137 QLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLL 196

Query: 804 SSPTIPLAPPPPSLSSNSSPVPPPP 828
               +P              + PPP
Sbjct: 197 KKSKLPFGLVIRPYQHLYDDIDPPP 221

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 55.9 bits (134), Expect = 1e-08
 Identities = 21/141 (14%), Positives = 35/141 (24%)

Query: 712 PATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPP 771
           P  +  +       P P  P   T V   + +   +   PP   V       P   PP  
Sbjct: 15  PRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE 74

Query: 772 KPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIA 831
            P + E+   +  P P P   +                      + +  +S         
Sbjct: 75  APVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSK 134

Query: 832 KVVSKTGVASPVPAPPSISPS 852
            V S       +       P+
Sbjct: 135 PVTSVASGPRALSRNQPQYPA 155

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 55.1 bits (132), Expect = 3e-08
 Identities = 32/166 (19%), Positives = 43/166 (25%), Gaps = 19/166 (11%)

Query: 695 SSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPAS 754
           SS  +   S    P  +  +       P P  P     +               P     
Sbjct: 2   SSHHHHHHSSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPAD---------LEPPQAVQ 52

Query: 755 TVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPP 814
                     P P P P+PP +    I    P P P P               +   P  
Sbjct: 53  PPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP----------KPVKKVQEQPKR 102

Query: 815 PSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSR 860
                 S P  P    A     +  A+   + P  S +SG   LSR
Sbjct: 103 DVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSR 148

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 53.9 bits (129), Expect = 7e-08
 Identities = 26/143 (18%), Positives = 36/143 (25%), Gaps = 12/143 (8%)

Query: 685 ATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDA 744
              LPAP    S T  + +    P       +    P P P P P PP + P        
Sbjct: 25  VIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAP-------- 76

Query: 745 SFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVS 804
                              P            +    R   P     P    SS ++  +
Sbjct: 77  ----VVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAAT 132

Query: 805 SPTIPLAPPPPSLSSNSSPVPPP 827
           S  +      P   S + P  P 
Sbjct: 133 SKPVTSVASGPRALSRNQPQYPA 155

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 33/172 (19%), Positives = 38/172 (22%), Gaps = 38/172 (22%)

Query: 621 SFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRD 680
           S       P PA   S+         PP   Q PP                         
Sbjct: 21  SVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPP------------------------- 55

Query: 681 KPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNR 740
                 P P PE                 P  A      P P P P P           R
Sbjct: 56  -EPVVEPEPEPEP------------IPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 102

Query: 741 NTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPP 792
           +     S P+ P      +  +S        KP     S  RA     P  P
Sbjct: 103 DVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYP 154

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 22/160 (13%), Positives = 27/160 (16%), Gaps = 14/160 (8%)

Query: 656 HHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATA 715
           HH SS       H    +           +  +  P                  P P   
Sbjct: 7   HHHSSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPE 66

Query: 716 KSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPL 775
               PP   P     P  K              P P    V            P    P 
Sbjct: 67  PIPEPPKEAPVVIEKPKPK--------------PKPKPKPVKKVQEQPKRDVKPVESRPA 112

Query: 776 KEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPP 815
                              +    +S  S P       P 
Sbjct: 113 SPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQ 152

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 54.3 bits (130), Expect = 5e-08
 Identities = 31/169 (18%), Positives = 38/169 (22%), Gaps = 22/169 (13%)

Query: 686 TPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDAS 745
             +  P    +G         A  P    A     P   P P     L  PV        
Sbjct: 80  MTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGG--- 136

Query: 746 FSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSS 805
              PS    T     T +                       P   PP   G        +
Sbjct: 137 ---PSQQVMTPQGRGTVAAAAAAATASIA----------GAPTQYPPGRGGPPPPMGRGA 183

Query: 806 PTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSG 854
           P   +  PPP +     P    PP        G    +P P    P  G
Sbjct: 184 PPPGMMGPPPGMRPPMGPPMGIPPGR------GTPMGMPPPGMRPPPPG 226

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 26/148 (17%), Positives = 33/148 (22%), Gaps = 17/148 (11%)

Query: 710 PAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPP 769
             P    +     P       P +      R   A    P  PA        + P     
Sbjct: 83  EGPPPKDTGIARVPLAGAAGGPGIGRAA-GRGIPAGVPMPQAPAGL------AGPVRGVG 135

Query: 770 PPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPP 829
            P   +                     S A +    P     PPPP       P    PP
Sbjct: 136 GPSQQVMTPQGRGTVAAAAAAAT---ASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPP 192

Query: 830 IAKVVSKTGVASPVPAPPSISPSSGKGR 857
                   G+  P+  P  I P  G   
Sbjct: 193 P-------GMRPPMGPPMGIPPGRGTPM 213

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 44.6 bits (105), Expect = 7e-05
 Identities = 36/171 (21%), Positives = 48/171 (28%), Gaps = 38/171 (22%)

Query: 623 SPTTPPPPPAPRPSIASSASK-VPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDK 681
               P    A  P I  +A + +P+  P PQ P      + P                  
Sbjct: 92  IARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPA---GLAGPVRGVGG------------ 136

Query: 682 PSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRN 741
           PS     P    + +   ++ + S A  P         PPPP     P P +  P     
Sbjct: 137 PSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGP----- 191

Query: 742 TDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPP 792
                  P              PP  PP   PP +        P   PPPP
Sbjct: 192 -------PPGM----------RPPMGPPMGIPPGRGTPMGMPPPGMRPPPP 225

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 1/113 (0%)

Query: 744 ASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTV 803
            S +   PP     ++          P       +  I AG P P  P   +G       
Sbjct: 78  VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGR-GIPAGVPMPQAPAGLAGPVRGVGG 136

Query: 804 SSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKG 856
            S  +       ++++ ++        A      G   P P     +P  G  
Sbjct: 137 PSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMM 189

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 55.5 bits (133), Expect = 7e-08
 Identities = 19/116 (16%), Positives = 30/116 (25%), Gaps = 12/116 (10%)

Query: 720 PPPPPPPPPPTPPLKTPVFNRNTDAS-FSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQ 778
                   P    +  P  +  + AS F     P  T        PP  P    PP  + 
Sbjct: 8   HHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVT-VPDPAPPPPPAPAAGNPP--DT 64

Query: 779 SAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVV 834
               +        P   G+++ +         A          +P   PP   + V
Sbjct: 65  VTGDSVLQRILRGPTGPGTTSLA--------PAVRYGRQPGPEAPASAPPAAGRAV 112

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 54.4 bits (130), Expect = 2e-07
 Identities = 24/115 (20%), Positives = 35/115 (30%), Gaps = 5/115 (4%)

Query: 680 DKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFN 739
               S+  +P   +     ++S + + +   A      T P P PPPPP       P   
Sbjct: 7   HHHHSSGLVP-RGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP--- 62

Query: 740 RNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLY 794
            +T    S         T   T+S        + P  E  A          P LY
Sbjct: 63  -DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLY 116

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 49.8 bits (118), Expect = 5e-06
 Identities = 21/107 (19%), Positives = 26/107 (24%), Gaps = 1/107 (0%)

Query: 689 PAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPP-PPPPPPTPPLKTPVFNRNTDASFS 747
                 SSG     S    P  +  +A S F     PP   P P    P      +   +
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64

Query: 748 TPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLY 794
                     L   + P T    P      Q    A    PP     
Sbjct: 65  VTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRA 111

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 48.6 bits (115), Expect = 1e-05
 Identities = 21/124 (16%), Positives = 29/124 (23%), Gaps = 13/124 (10%)

Query: 624 PTTPPP----PPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDR 679
            +   P       P  S+ S+AS   +   PP        +  P   P        +   
Sbjct: 11  SSGLVPRGSHMVIPSASVTSAASDFLAALHPP--VTVPDPAPPPPPAPAAGNPPDTVTGD 68

Query: 680 DKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFN 739
                    P    +  GT   TSL+ A               PP      P L      
Sbjct: 69  SVLQRILRGP----TGPGT---TSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121

Query: 740 RNTD 743
               
Sbjct: 122 EPDP 125

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 47.1 bits (111), Expect = 3e-05
 Identities = 22/180 (12%), Positives = 32/180 (17%), Gaps = 47/180 (26%)

Query: 623 SPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKP 682
           S           P             P   +     +S   A                 P
Sbjct: 4   SHHHHHHSSGLVPR------GSHMVIPSASVTSA--ASDFLAAL--------------HP 41

Query: 683 SSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNT 742
               P PAP               A  P       +        P               
Sbjct: 42  PVTVPDPAP--------PPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGT---------- 83

Query: 743 DASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASST 802
               ++ +P           +P + PP     +     +   P P P P      S    
Sbjct: 84  ----TSLAPAVRYGRQPGPEAPASAPPAAGRAV---PGLYHHPVPEPDPVRVEEVSRRIK 136

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.6 bits (102), Expect = 3e-04
 Identities = 19/108 (17%), Positives = 28/108 (25%), Gaps = 15/108 (13%)

Query: 762 SSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNS 821
           SS                   +G  P     +   +S +S  S     L PP        
Sbjct: 3   SSHHHHHHS------------SGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAP 50

Query: 822 SPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSRSHQT 869
            P P P       + TG +            +G G  S   + R  + 
Sbjct: 51  PPPPAPAAGNPPDTVTGDSVLQRILR---GPTGPGTTSLAPAVRYGRQ 95

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.6 bits (102), Expect = 4e-04
 Identities = 15/108 (13%), Positives = 27/108 (25%)

Query: 744 ASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTV 803
           +S       +  V   +    P+            +       P P PP     +A +  
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 804 SSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISP 851
            + T                     P  +   + G  +P  APP+   
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGR 110

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.4 bits (99), Expect = 7e-04
 Identities = 19/147 (12%), Positives = 29/147 (19%), Gaps = 15/147 (10%)

Query: 747 STPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSP 806
           S+      +  L    S    P                PP   P P      A     +P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDP------APPPPPAP 56

Query: 807 TIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSRS 866
                P   +  S    +   P      +  G  S  PA          G  +   +  +
Sbjct: 57  AAGNPPDTVTGDSVLQRILRGP------TGPGTTSLAPAVR---YGRQPGPEAPASAPPA 107

Query: 867 HQTKKLKPLHWLKLTRAVQGSLWAEAQ 893
                    H                +
Sbjct: 108 AGRAVPGLYHHPVPEPDPVRVEEVSRR 134

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 55.0 bits (131), Expect = 2e-07
 Identities = 25/208 (12%), Positives = 43/208 (20%), Gaps = 16/208 (7%)

Query: 668 HTKESKSHMQDRDK-PSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPP 726
           H      H    +           PE S            A     +             
Sbjct: 3   HHHHHHGHHHQLENLYFQGEETAVPENS-----------GANTELVSGESEHSTNEADKQ 51

Query: 727 PPPTPPLKTPVFNRNTDASFSTPSPPASTVTLST----TSSPPTPPPPPKPPLKEQSAIR 782
                  +  +      A+ S  + PAS    +T     +S   P       + E  +  
Sbjct: 52  NEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAE 111

Query: 783 AGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASP 842
           A P           ++     S P          +  +           K +        
Sbjct: 112 AKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEEL 171

Query: 843 VPAPPSISPSSGKGRLSRTISSRSHQTK 870
           +   P         R S  ++SR     
Sbjct: 172 LKWEPGAREDDAINRGSVVLASRRTGHL 199

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 52.7 bits (125), Expect = 8e-07
 Identities = 27/227 (11%), Positives = 51/227 (22%), Gaps = 17/227 (7%)

Query: 612 HEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKE 671
           H             T  P  +   +   S     S     +               H +E
Sbjct: 10  HHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADK----------QNEGEHARE 59

Query: 672 SKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTP 731
           +K      +K           + +S   ++T  + A   A    K++      P     P
Sbjct: 60  NKL-----EKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKP 114

Query: 732 PLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPP 791
                   +    +    S PA+      T     P  P       +             
Sbjct: 115 KSDKETEAKPEATNQGDESKPAAEAN--KTEKEVQPDVPKNTEKTLKPKEIKFNSWEELL 172

Query: 792 PLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTG 838
               G+     ++  ++ LA        N          A   + + 
Sbjct: 173 KWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEAKVQALSNTNSK 219

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 50.9 bits (120), Expect = 5e-07
 Identities = 21/141 (14%), Positives = 31/141 (21%)

Query: 685 ATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDA 744
            +P   PE   +        +T     P +       PP PPPP   P K     +    
Sbjct: 2   GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61

Query: 745 SFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVS 804
              T  P  S  T S  +         +P    Q              L +    +   +
Sbjct: 62  FEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPAT 121

Query: 805 SPTIPLAPPPPSLSSNSSPVP 825
                                
Sbjct: 122 VNGTVEGGSGAGRLDLPPGFM 142

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 18/133 (13%), Positives = 26/133 (19%)

Query: 720 PPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQS 779
           P       P      TP        S     PP       T S                 
Sbjct: 8   PEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFV 67

Query: 780 AIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGV 839
              +   P  P      +  +   +    P        +S+S P          V+ T  
Sbjct: 68  PEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVE 127

Query: 840 ASPVPAPPSISPS 852
                    + P 
Sbjct: 128 GGSGAGRLDLPPG 140

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 22/137 (16%), Positives = 32/137 (23%), Gaps = 8/137 (5%)

Query: 720 PPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQS 779
            P   P        +         A  +TP              PP PPPP   P KE  
Sbjct: 3   SPAATPEIRVNHEPEP--------AGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVK 54

Query: 780 AIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGV 839
             +               +  S  +  +       P+  +           A       V
Sbjct: 55  QEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVV 114

Query: 840 ASPVPAPPSISPSSGKG 856
               PA  + +   G G
Sbjct: 115 VETFPATVNGTVEGGSG 131

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 18/141 (12%), Positives = 29/141 (20%)

Query: 625 TTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSS 684
            +P   P  R +     +   +P       P       P   P        ++     S 
Sbjct: 2   GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61

Query: 685 ATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDA 744
                 PE S +  +     S         A +  P         +  L   V       
Sbjct: 62  FEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPAT 121

Query: 745 SFSTPSPPASTVTLSTTSSPP 765
              T    +    L       
Sbjct: 122 VNGTVEGGSGAGRLDLPPGFM 142

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 26/176 (14%), Positives = 44/176 (25%)

Query: 747 STPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSP 806
            +P+                  P    P       +  P PPPP    S       + S 
Sbjct: 2   GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61

Query: 807 TIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSRS 866
                 P  S+++ S P              G   P     S + SS    +       +
Sbjct: 62  FEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPAT 121

Query: 867 HQTKKLKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEK 922
                       +L          +AQ    A+   E+ +   + +      N E+
Sbjct: 122 VNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEE 177

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 19/128 (14%), Positives = 35/128 (27%)

Query: 624 PTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPS 683
              P     P  ++  S S++   PP P  P H  S         +    + + +    +
Sbjct: 15  EPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTT 74

Query: 684 SATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTD 743
            + P  A E +     ++ +       A   A S+ P       P T        +    
Sbjct: 75  PSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGR 134

Query: 744 ASFSTPSP 751
                   
Sbjct: 135 LDLPPGFM 142

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 42.8 bits (99), Expect = 3e-04
 Identities = 19/134 (14%), Positives = 32/134 (23%), Gaps = 9/134 (6%)

Query: 682 PSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRN 741
             +    P      S +         P P    +K             T   +  V    
Sbjct: 17  EPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISV---- 72

Query: 742 TDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASS 801
                +TPS PA    ++  + P      P      ++A  + P         + +    
Sbjct: 73  -----TTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVE 127

Query: 802 TVSSPTIPLAPPPP 815
             S       PP  
Sbjct: 128 GGSGAGRLDLPPGF 141

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 1/148 (0%)

Query: 730 TPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPP 789
             P  TP    N +   +  + P +T+  S +     PP PP P       ++       
Sbjct: 2   GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61

Query: 790 PPPLYSGSSASSTVSSPTIPLAPPPPSLS-SNSSPVPPPPPIAKVVSKTGVASPVPAPPS 848
               +    + +T S P         +   + +             S          P +
Sbjct: 62  FEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPAT 121

Query: 849 ISPSSGKGRLSRTISSRSHQTKKLKPLH 876
           ++ +   G  +  +        K++  H
Sbjct: 122 VNGTVEGGSGAGRLDLPPGFMFKVQAQH 149

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 22/151 (14%), Positives = 36/151 (23%), Gaps = 2/151 (1%)

Query: 645 PSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSL 704
            SP   P++  +H         P     KS  Q R  P    P P   T S        L
Sbjct: 2   GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPP--VPPPPKHTPSKEVKQEQIL 59

Query: 705 STAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSP 764
           S            T P  P          +     +    + ++ +  +S   +   + P
Sbjct: 60  SLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFP 119

Query: 765 PTPPPPPKPPLKEQSAIRAGPPPPPPPPLYS 795
            T     +                     + 
Sbjct: 120 ATVNGTVEGGSGAGRLDLPPGFMFKVQAQHD 150

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 19/132 (14%), Positives = 30/132 (22%), Gaps = 7/132 (5%)

Query: 624 PTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPS 683
              P P     P      S       PP  PP       P H P  +  +  +    + +
Sbjct: 13  NHEPEPAGGATPGATLPKSPSQLRKGPPVPPP-------PKHTPSKEVKQEQILSLFEDT 65

Query: 684 SATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTD 743
               +     S     S  +  T P         T          P   ++T     N  
Sbjct: 66  FVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGT 125

Query: 744 ASFSTPSPPAST 755
               + +     
Sbjct: 126 VEGGSGAGRLDL 137

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 51.3 bits (121), Expect = 1e-06
 Identities = 31/196 (15%), Positives = 46/196 (23%), Gaps = 11/196 (5%)

Query: 615 AGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKS 674
              +   F     P PP   P   +  +  P+ P           S           +  
Sbjct: 2   EQRRVTDFFARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKR---ARPPAAPG 58

Query: 675 HMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLK 734
             Q R        L   E SS  T  +  +   P P     KST     PP         
Sbjct: 59  RDQARPPARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQD 118

Query: 735 TPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLY 794
           T     +              +  S   +  +  P  +   +         P     P Y
Sbjct: 119 TISELASCLQRARELGARVRALKASAQDAGESCTPEAEGRPE--------EPCGEKAPAY 170

Query: 795 SGSSASSTVSSPTIPL 810
               A +    P + L
Sbjct: 171 QRFHALAQPGLPGLVL 186

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 50.9 bits (120), Expect = 2e-06
 Identities = 34/187 (18%), Positives = 49/187 (26%), Gaps = 12/187 (6%)

Query: 679 RDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVF 738
              P  A P  A  T S    +  +      PA AT+ S     PP  P        P  
Sbjct: 15  PGPPRIAPPKLACRTPSPARPALRA------PASATSGSRKRARPPAAPGRDQA--RPPA 66

Query: 739 NRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSS 798
            R    S    S P++          P  P P +   K   A    P         + S 
Sbjct: 67  RRRLRLSVDEVSSPST----PEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISE 122

Query: 799 ASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRL 858
            +S +       A      +S         P A+   +       PA       +  G  
Sbjct: 123 LASCLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLP 182

Query: 859 SRTISSR 865
              +  +
Sbjct: 183 GLVLPYK 189

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 45.9 bits (107), Expect = 7e-05
 Identities = 28/174 (16%), Positives = 44/174 (25%), Gaps = 2/174 (1%)

Query: 623 SPTTPPPPPAPR-PSIASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDK 681
            P   PP  A R PS A  A + P+             ++           +      D+
Sbjct: 17  PPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDE 76

Query: 682 PSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRN 741
            SS +   AP+  +  +       + P  A      T              L+       
Sbjct: 77  VSSPSTPEAPDIPACPSPGQKIKKSTP-AAGQPPHLTSAQDQDTISELASCLQRARELGA 135

Query: 742 TDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYS 795
              +    +  A           P  P   K P  ++    A P  P     Y 
Sbjct: 136 RVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPYK 189

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 45.5 bits (106), Expect = 9e-05
 Identities = 26/157 (16%), Positives = 43/157 (27%), Gaps = 1/157 (0%)

Query: 720 PPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQS 779
           P PP   PP               A  S  S                  PP +  L+   
Sbjct: 15  PGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSV 74

Query: 780 AIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGV 839
              + P  P  P + +  S    +   T P A  PP L+S           + +     +
Sbjct: 75  DEVSSPSTPEAPDIPACPSPGQKIKKST-PAAGQPPHLTSAQDQDTISELASCLQRAREL 133

Query: 840 ASPVPAPPSISPSSGKGRLSRTISSRSHQTKKLKPLH 876
            + V A  + +  +G+               +  P +
Sbjct: 134 GARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAY 170

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 44.0 bits (102), Expect = 3e-04
 Identities = 22/156 (14%), Positives = 35/156 (22%)

Query: 747 STPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSP 806
             P PP          +P    P  + P    S  R    PP  P        +      
Sbjct: 13  RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72

Query: 807 TIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSRS 866
           ++     P +  +   P  P P      S      P     +    +     S    +R 
Sbjct: 73  SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132

Query: 867 HQTKKLKPLHWLKLTRAVQGSLWAEAQKSGEASKAP 902
              +        +              +     KAP
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAP 168

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 50.1 bits (119), Expect = 3e-06
 Identities = 25/129 (19%), Positives = 34/129 (26%), Gaps = 3/129 (2%)

Query: 702 TSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTT 761
                  +       ST        P     +  P    +        SP      +ST 
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSL--HPSLGPGIGSPGQLHSPISTL 59

Query: 762 SSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYS-GSSASSTVSSPTIPLAPPPPSLSSN 820
           SSP     PP   +       +   P  P   +S GS   S+  +P        P L  N
Sbjct: 60  SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119

Query: 821 SSPVPPPPP 829
                P  P
Sbjct: 120 GVLKVPAHP 128

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.9 bits (116), Expect = 9e-06
 Identities = 24/156 (15%), Positives = 32/156 (20%), Gaps = 18/156 (11%)

Query: 673 KSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPP 732
             H                  SS  + +      AP   P+       P     P  T  
Sbjct: 2   AHHHHHHVDDDDKMFSTQV-NSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLS 60

Query: 733 LKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPP 792
                      +  +   PP S +      S P  P     P         G P    P 
Sbjct: 61  -----------SPINGMGPPFSVI------SSPMGPHSMSVPTTPTLGFSTGSPQLSSPM 103

Query: 793 LYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPP 828
               SS           +   P   S N +      
Sbjct: 104 NPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 45.9 bits (108), Expect = 7e-05
 Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 5/122 (4%)

Query: 747 STPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSP 806
           S+ + P    +++  S  P+  P    P +  S     P      P+       S +SSP
Sbjct: 22  SSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHS-----PISTLSSPINGMGPPFSVISSP 76

Query: 807 TIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSRS 866
             P +   P+  +       P   + +   +      P              S  ++S +
Sbjct: 77  MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFT 136

Query: 867 HQ 868
             
Sbjct: 137 KH 138

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 43.9 bits (103), Expect = 3e-04
 Identities = 23/141 (16%), Positives = 32/141 (22%), Gaps = 8/141 (5%)

Query: 593 HQIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQ 652
           H +     +    + SS           + S      P    P    S     S P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 653 LPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAP 712
            PP    SS              M     P+      +P+ SS     S+S    P    
Sbjct: 67  GPPFSVISSPMGPH--------SMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118

Query: 713 ATAKSTFPPPPPPPPPPTPPL 733
                    P       T  +
Sbjct: 119 NGVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 43.2 bits (101), Expect = 5e-04
 Identities = 24/150 (16%), Positives = 38/150 (25%), Gaps = 11/150 (7%)

Query: 644 VPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTS 703
           +               S+       +   +         S A P   P +   G  S   
Sbjct: 1   MAHHHHHHVDDDDKMFSTQVNSSLTSPTGR--------GSMAAPSLHP-SLGPGIGSPGQ 51

Query: 704 LSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSS 763
           L +      +      PP      P  P   +          FST SP  S+     +SS
Sbjct: 52  LHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPT--LGFSTGSPQLSSPMNPVSSS 109

Query: 764 PPTPPPPPKPPLKEQSAIRAGPPPPPPPPL 793
               PP     + +  A  +G        +
Sbjct: 110 EDIKPPLGLNGVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 43.2 bits (101), Expect = 5e-04
 Identities = 24/124 (19%), Positives = 39/124 (31%), Gaps = 7/124 (5%)

Query: 743 DASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASST 802
                      ST   S+ +SP        P L        G P     P+       ST
Sbjct: 6   HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPI-------ST 58

Query: 803 VSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTI 862
           +SSP   + PP   +SS   P     P    +  +  +  + +P +   SS   +    +
Sbjct: 59  LSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118

Query: 863 SSRS 866
           +   
Sbjct: 119 NGVL 122

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 50.3 bits (120), Expect = 3e-06
 Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 4/112 (3%)

Query: 763 SPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSS 822
           + PT P  P      Q+A   GP  P PP L +  +          P  P PP  + +++
Sbjct: 3   AAPTSPGTPGVAAATQAA-NGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 823 PVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKG---RLSRTISSRSHQTKK 871
            V       +   +   A    A   + P        +  +     +    +
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQ 113

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 46.5 bits (110), Expect = 5e-05
 Identities = 7/92 (7%), Positives = 13/92 (14%)

Query: 711 APATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPP 770
           AP +  +             P    P            P         +           
Sbjct: 4   APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATV 63

Query: 771 PKPPLKEQSAIRAGPPPPPPPPLYSGSSASST 802
                  +  +R           Y     +  
Sbjct: 64  AAGHATLREHLRDIKAENTDANFYVCPPPTGA 95

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.0 bits (101), Expect = 7e-04
 Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 7/95 (7%)

Query: 694 SSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPA 753
           +S GT    + + A    PAT     P PP     PT   K          + + P P  
Sbjct: 6   TSPGTPGVAAATQAANGGPAT-----PAPPALGAAPTGDPKPK--KNKKPKNPTPPRPAG 58

Query: 754 STVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPP 788
              T++   +               +     PPP 
Sbjct: 59  DNATVAAGHATLREHLRDIKAENTDANFYVCPPPT 93

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 48.7 bits (114), Expect = 9e-06
 Identities = 25/141 (17%), Positives = 31/141 (21%), Gaps = 31/141 (21%)

Query: 693 TSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPP 752
            + +   S  +         AT        P  P       K P         +S     
Sbjct: 385 GAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNI------WYSLNGKI 438

Query: 753 ASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAP 812
            +      T   PTPP  P  P K        P      PL               P+AP
Sbjct: 439 RAVNVPKVTKEKPTPPVKPTAPTK--------PTYETEKPL------------KPAPVAP 478

Query: 813 PPPSLSSNSSPVPPPPPIAKV 833
                     P PP       
Sbjct: 479 NYEKE-----PTPPTRLEHHH 494

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 20/120 (16%), Positives = 32/120 (26%), Gaps = 1/120 (0%)

Query: 716 KSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPL 775
           K           P    + + + N ++ +     +  A   T    S   T P     P 
Sbjct: 3   KLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPP 62

Query: 776 KEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVS 835
                        P   + S      T SSP   +          SSP   P  I +++ 
Sbjct: 63  HGSLQGYQTYGHFPSRAIKSEYPDPYT-SSPESIMGYSYMDSYQTSSPASIPHLILELLK 121

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 3/149 (2%)

Query: 598 SPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPSIASSASKVPSPPPPPQLPPHH 657
                D  ++S+ ++  +  K    +    PP    R    +S   +  PP    L  + 
Sbjct: 12  QAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS-LQGYQ 70

Query: 658 FSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSS--TSLSTAPLPAPATA 715
                P+    ++    +    +     + + + +TSS  +       L       P   
Sbjct: 71  TYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQ 130

Query: 716 KSTFPPPPPPPPPPTPPLKTPVFNRNTDA 744
                         +   K   F      
Sbjct: 131 AKIMAYLQQEQANRSKHEKLSTFGLMCKM 159

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 43.1 bits (101), Expect = 5e-04
 Identities = 20/153 (13%), Positives = 36/153 (23%), Gaps = 5/153 (3%)

Query: 682 PSSATPLPAPETSSSGTNSSTSLS-TAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNR 740
                 +P+  T SS   +  S S   PL   A   + +   P    P +  +      +
Sbjct: 8   SQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQ 67

Query: 741 NTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSAS 800
                   PS    +      +S P            Q++     P   P  +       
Sbjct: 68  GYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTS----SPASIPHLILELLKCE 123

Query: 801 STVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKV 833
                    +        +N S          +
Sbjct: 124 PDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLM 156

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.8 bits (110), Expect = 3e-05
 Identities = 29/170 (17%), Positives = 51/170 (30%), Gaps = 6/170 (3%)

Query: 758 LSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSL 817
           LS ++     P      L+        P    P      ++AS+  +S   P+A P    
Sbjct: 9   LSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPS 68

Query: 818 SSNSSPVPPPPPIAKVV-SKTGVASPVPAPPSISPSSGKGRLSRTISSRSHQTKKLKPLH 876
             +S        ++  V   T  A+   +      S G GR                   
Sbjct: 69  PGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLL--VIDEPHTD 126

Query: 877 WLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENL-FSATIPNSEKGGK 925
           W K  +     +  E     E ++  ++++    N  FS  +     G K
Sbjct: 127 WAKYFKG--KKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVK 174

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.8 bits (110), Expect = 3e-05
 Identities = 20/133 (15%), Positives = 30/133 (22%), Gaps = 14/133 (10%)

Query: 696 SGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPAST 755
           S +N   +L    +      +   PPP    P  TP               S  +     
Sbjct: 10  SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPG--------------SAAASAERA 55

Query: 756 VTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPP 815
            T +  +SP  P P         S++             + S      S           
Sbjct: 56  STAAPVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAAR 115

Query: 816 SLSSNSSPVPPPP 828
            L     P     
Sbjct: 116 VLLVIDEPHTDWA 128

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.0 bits (108), Expect = 7e-05
 Identities = 15/125 (12%), Positives = 36/125 (28%), Gaps = 1/125 (0%)

Query: 672 SKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTP 731
           S S+          T L  P+      ++++  +T    A +  +++   P   P  P+P
Sbjct: 10  SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSP 69

Query: 732 PLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPP 791
              +      +  S +     A+     +           +     +  +    P     
Sbjct: 70  G-SSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWA 128

Query: 792 PLYSG 796
             + G
Sbjct: 129 KYFKG 133

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 44.1 bits (103), Expect = 2e-04
 Identities = 22/127 (17%), Positives = 30/127 (23%), Gaps = 5/127 (3%)

Query: 746 FSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSS 805
            S  +  A+      T      PPPP P      A   G  P         +S ++ V+S
Sbjct: 9   LSDSNFMANLPNGYMTDLQRPQPPPPPPS-----AASPGATPGSAAASAERASTAAPVAS 63

Query: 806 PTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTISSR 865
           P  P           SS            + T                   R+   I   
Sbjct: 64  PAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEP 123

Query: 866 SHQTKKL 872
                K 
Sbjct: 124 HTDWAKY 130

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 43.3 bits (101), Expect = 4e-04
 Identities = 21/130 (16%), Positives = 29/130 (22%), Gaps = 32/130 (24%)

Query: 700 SSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLS 759
           S ++     LP         P PPPPPP    P                           
Sbjct: 10  SDSNFMAN-LPNGYMTDLQRPQPPPPPPSAASP--------------------------- 41

Query: 760 TTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSS 819
                 TP        +  +A     P  P P    G    S++S+          +  S
Sbjct: 42  ----GATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFS 97

Query: 820 NSSPVPPPPP 829
                     
Sbjct: 98  EQVGGGSGGA 107

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 45.8 bits (108), Expect = 4e-05
 Identities = 15/85 (17%), Positives = 20/85 (23%), Gaps = 9/85 (10%)

Query: 708 PLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTP 767
             PAP       P PP PP     P +               +  A  +           
Sbjct: 14  WRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVA---------ALGALALQPKQKQKRAQK 64

Query: 768 PPPPKPPLKEQSAIRAGPPPPPPPP 792
            P   PP K +   +   P      
Sbjct: 65  KPKKTPPPKPKKTQKPKKPTQKKKS 89

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 21/167 (12%), Positives = 39/167 (23%), Gaps = 16/167 (9%)

Query: 634 RPSIASSASKVPSPPPPPQLPP--HHFSSSC----PAH-FPHTKESKSHMQD--RDKPSS 684
                     +P   P  +                P   F   +E  + +    R+  + 
Sbjct: 274 PTRNGRYVDGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREVVAQ 333

Query: 685 ATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDA 744
            T +P P  S+  + S ++     L A                         V       
Sbjct: 334 DTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSV------- 386

Query: 745 SFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPP 791
               P+  A++V  +T  S P          +  +    G       
Sbjct: 387 PLVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESV 433

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 43.8 bits (102), Expect = 2e-04
 Identities = 11/96 (11%), Positives = 25/96 (26%)

Query: 734 KTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPPL 793
             P       + F           ++      +P   P       +    G  P   P  
Sbjct: 224 HVPELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTE 283

Query: 794 YSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPP 829
            +  S + +V+  + P +    +   + +  P    
Sbjct: 284 RTRRSETESVNPVSTPASVEYHAGMKSLNKAPYSSN 319

>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A Length = 313

 Score = 43.0 bits (100), Expect = 4e-04
 Identities = 13/111 (11%), Positives = 25/111 (22%)

Query: 682 PSSATPLPAPETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRN 741
            ++  P P    +    +S+            ++ S  P         T P  T      
Sbjct: 185 GTAIFPRPEHMETHEVPSSTYVPKGMNSTESNSSASVRPKVLSSIQEGTVPDNTSSARGK 244

Query: 742 TDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPP 792
            D + + P+                   P       + +      P    P
Sbjct: 245 EDVNKTLPNLQVVNHQQGPHHRHILKLLPSMEATGGEKSSTPIKGPKRGHP 295

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 42.5 bits (99), Expect = 5e-04
 Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 708 PLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTP 767
           P PAP             P P    L + +            +   S + +   + P  P
Sbjct: 13  PFPAPTAMWRPRRRRQAAPMPARNGLASQI---------QQLTTAVSALVIGQATRPQNP 63

Query: 768 PPPPKPPLKEQSAIRAGPPPPPPPP 792
            P P P  K+Q+  +   P  P P 
Sbjct: 64  RPRPPPRQKKQAPKQPPKPKKPKPQ 88

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 34/340 (10%), Positives = 74/340 (21%), Gaps = 20/340 (5%)

Query: 692  ETSSSGTNSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSP 751
              SS     S  L        +  +             +  +       N      T   
Sbjct: 78   NYSSGFLTRSPRLILFFKDPSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDT 137

Query: 752  PASTVTLSTTSSPPTPPPPPKPPLKEQSAIRAGPPPPPPPP---------LYSGSSASST 802
              + + ++                       A P                  +     + 
Sbjct: 138  LPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGNC 197

Query: 803  VSSPTIPLAPPPPSLSSNSSPVPPPPPIAKVVSKTGVASPVPAPPSISPSSGKGRLSRTI 862
                             N           ++   +   +        S SS     S T 
Sbjct: 198  EICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTG---SSTE 254

Query: 863  SSRSHQTKKLKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEK 922
              +    K    L      RA++  L    +K+        + ++ ++    A+      
Sbjct: 255  FVQLSFRKSDGVLFSQATERALENILT---EKNKHIFNQNVVSVNGVDMRKGASSHEYNN 311

Query: 923  GGKPNQRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVE 982
                 +          ++     +  N +I+ +     L +LM    ++E    +++   
Sbjct: 312  EVPFIETKLSRIGISSLEKSRENQLLNNDILFNNALTDLNKLMSLATSIERLYKNSNITM 371

Query: 983  NLIKFCPTKEEMDLLKGYTG-----DKEKLGKCEQFFLEL 1017
                     E               D+EK    E F  E+
Sbjct: 372  KTKTLNLQDESTVNEPKTRRPLLILDREKFLNKELFLDEI 411

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1237
d1v9da_	332	a.207.1.1 (A:) Diaphanous protein homolog 1, dia1	4e-93
d1ux5a_	411	a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces	3e-84
d1d5ra1	141	b.7.1.1 (A:188-351) Pten tumor suppressor (Phoshph	6e-36
d1d5ra2	174	c.45.1.1 (A:14-187) Phoshphoinositide phosphatase	4e-21

>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  300 bits (769), Expect = 4e-93
 Identities = 75/286 (26%), Positives = 150/286 (52%)

Query: 938  KVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLL 997
            +++++D + A N  I L   ++P  E+   +L + ++ +    ++NLIK  P  E++ +L
Sbjct: 3    ELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKML 62

Query: 998  KGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQV 1057
                 + + L + EQF + +  VPR+  +L    FK+QF  QV +++  +  V +A E++
Sbjct: 63   SELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEEL 122

Query: 1058 RNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVL 1117
            R S     +++  L +GN +N G+    A GF +  L KL DT++ + KMTL+H+L ++ 
Sbjct: 123  RKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELC 182

Query: 1118 ADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFS 1177
             +  PE+L F ++L  +E AS++  + L + +  + K +  V +++          + F 
Sbjct: 183  ENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFV 242

Query: 1178 KILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQ 1223
            + +  F++ A+ +   L  ++S +      L  YF  DP +   E+
Sbjct: 243  EKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEE 288

>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 411

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  278 bits (713), Expect = 3e-84
 Identities = 71/378 (18%), Positives = 145/378 (38%), Gaps = 38/378 (10%)

Query: 869  TKKLKPLHWLKLTRAVQGSLWAEAQKSGEASK-APEIDMSELENLFSATIPNSEKGGKPN 927
             KKLK LHW KL      S+W   +    A     +  +++LE  F+A    S    +  
Sbjct: 6    HKKLKQLHWEKL-DCTDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKRK- 63

Query: 928  QRVPRGPQSDKVQLIDHRRAYNCEIMLSKV-KVPLPELMRSVLALEDSAIDADQVENLI- 985
                      K+  +    +    I L     + + +L++ +L  +   +    V   + 
Sbjct: 64   ------EDLQKITFLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLS 117

Query: 986  -------------KFCPTKEEMDLLKGYT------GDKEKLGKCEQFFLELMK--VPRVE 1024
                          + P   + + ++          D   L + +Q +L+LM        
Sbjct: 118  KSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWG 177

Query: 1025 SKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARG 1084
            S++R  +    +  + ++L + L  V+ A   ++ S  LR +   IL++GN +N  + + 
Sbjct: 178  SRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQ- 236

Query: 1085 AAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKF 1144
             A GF+L +L +LT  +   N MT ++Y+ K++    P   DF  +L  +    K+ ++ 
Sbjct: 237  -AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQ 295

Query: 1145 LAEEMQALSKGLEKVVQELSM----SENDGAISENFSKILREFLRFAEAEVRTLASLYSA 1200
            L  + +  S+ +  V + + +      +     +         L  A  +   L      
Sbjct: 296  LVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKL 355

Query: 1201 VGRNVDALILYFGEDPAR 1218
                 ++L+  +GED   
Sbjct: 356  TIMEFESLMHTYGEDSGD 373

>d1d5ra1 b.7.1.1 (A:188-351) Pten tumor suppressor (Phoshphoinositide phosphatase), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Pten tumor suppressor (Phoshphoinositide phosphatase), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (329), Expect = 6e-36
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 26/149 (17%)

Query: 201 ALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAE 260
           AL    ++  +IP F G G C P F +             KV   +S       T ++ +
Sbjct: 5   ALLFHKMMFETIPMFSG-GTCNPQFVVCQL----------KVKIYSSNSGP---TRREDK 50

Query: 261 CELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNTAFIRSN----------ILML 310
               +      + GD+ +E     + + +++ MF    NT FI             +L L
Sbjct: 51  FMYFEFPQPLPVCGDIKVEFFHKQNKMLKKDKMFHFWVNTFFIPGPEEVDNDKEYLVLTL 110

Query: 311 NLDEVDILWNAK--ELFPKEFRAEILFSE 337
             +++D     K    F   F+ ++ F++
Sbjct: 111 TKNDLDKANKDKANRYFSPNFKVKLYFTK 139

>d1d5ra2 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.7 bits (222), Expect = 4e-21
 Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 17/170 (10%)

Query: 19  ISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVL 78
           I   +      F  +   E  Y+  I  ++  L     +  + ++N   E          
Sbjct: 15  IYPNIIAM--GFPAER-LEGVYRNNIDDVVRFLDSKHKNH-YKIYNLCAERHYDT----- 65

Query: 79  SEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFML 138
           ++F+  +  YP +    P   +E+I  F    + WLS   ++V  +HC + G      M+
Sbjct: 66  AKFNCRVAQYPFEDHNPP--QLELIKPFCEDLDQWLSEDDNHVAAIHC-KAGKGRTGVMI 122

Query: 139 AALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSR 188
            A L++R ++    + LD        E+         +PSQ RY+ Y S 
Sbjct: 123 CAYLLHRGKFLKAQEALDFY-----GEVRTRDKKGVTIPSQRRYVYYYSY 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1237
d1ux5a_	411	Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	100.0
d1v9da_	332	Diaphanous protein homolog 1, dia1 {Mouse (Mus mus	100.0
d1d5ra2	174	Phoshphoinositide phosphatase Pten (Pten tumor sup	100.0
d1d5ra1	141	Pten tumor suppressor (Phoshphoinositide phosphata	99.94
d1fpza_	176	Kinase associated phosphatase (kap) {Human (Homo s	99.84
d1i9sa_	194	mRNA capping enzyme, triphosphatase domain {Mouse	99.83
d1ohea2	182	Proline directed phosphatase CDC14b2 {Human (Homo	99.79
d1rxda_	152	Protein tyrosine phosphatase type IVa {Human (Homo	99.71
d1mkpa_	144	Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp	98.99
d1vhra_	178	VH1-related dual-specificity phosphatase, VHR {Hum	98.83
d2pt0a1	313	Myo-inositol hexaphosphate phosphohydrolase (phyta	98.64
d1xria_	151	Putative phosphatase At1g05000 {Thale cress (Arabi	98.49
d1m3ga_	145	Mapk phosphatase {Human (Homo sapiens), pac-1 [Tax	98.32
d1g4us2	243	SptP tyrosine phosphatase, catalytic domain {Salmo	98.25
d1wcha_	308	Tyrosine-protein phosphatase, non-receptor type 13	97.59
d2shpa1	307	Tyrosine phosphatase {Human (Homo sapiens), shp-2	97.53
d1jlna_	297	Tyrosine phosphatase {Mouse (Mus musculus), ptp-sl	97.51
d1lara1	317	RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}	97.38
d1l8ka_	273	Tyrosine phosphatase {Human (Homo sapiens), T-cell	97.37
d1fpra_	284	Tyrosine phosphatase {Human (Homo sapiens), shp-1	97.28
d1yfoa_	288	Tyrosine phosphatase {Mouse (Mus musculus) [TaxId:	97.27
d1rpma_	278	Tyrosine phosphatase {Human (Homo sapiens), mu [Ta	97.27
d2f71a1	297	Tyrosine phosphatase {Human (Homo sapiens), 1B [Ta	97.26
d1lyva_	283	Protein-tyrosine phosphatase YopH, catalytic domai	97.21
d1lara2	249	RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}	97.13
d1p15a_	245	Protein-tyrosine phosphatase alpha {Mouse (Mus mus	96.99
d1ywfa1	272	Phosphotyrosine protein phosphatase PtpB {Mycobact	92.93
d1ohea1	157	Proline directed phosphatase CDC14b2 {Human (Homo	89.46

>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=487.68  Aligned_cols=359  Identities=20%  Similarity=0.316  Sum_probs=317.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             565565454442123554567533333225755-6697767566999974118998789999998899998985112473
Q 000884          866 SHQTKKLKPLHWLKLTRAVQGSLWAEAQKSGEA-SKAPEIDMSELENLFSATIPNSEKGGKPNQRVPRGPQSDKVQLIDH  944 (1237)
Q Consensus       866 ~~~k~klK~LhW~kI~~~~~~TiW~~l~~~~~~-~~~~~~D~~eLE~lF~~~~~~~~~~k~~~~~~s~~~k~~ki~iLd~  944 (1237)
                      ..|+.+||+|||++|+ ..++|||+.+...... .....+|+.+||++|+++..+...     ..+  ..+.++++|||.
T Consensus         3 PkP~~klK~l~W~ki~-~~~~tiW~~i~~~~~~~~~~~~~~~~~le~~F~~k~~~~~~-----~~~--~~~~~~~~lLd~   74 (411)
T d1ux5a_           3 PRPHKKLKQLHWEKLD-CTDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLA-----SKR--KEDLQKITFLSR   74 (411)
T ss_dssp             CCCSSCBCCCCCCCCS-SCCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHH-----HHH--HHTTTSBCCSCH
T ss_pred             CCCCCCCCCCCCEECC-CCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-----CCC--CCCCCCCCCCCH
T ss_conf             9899999897761599-98988200204410036788663099999986447777776-----666--666662001767


Q ss_pred             CCCCCCCCCCCCC-CCCHHHHHHHHHHCCCCCCCHHHHHHHH--------------HCCCCHHHHHHHHCCC------CC
Q ss_conf             1112233122357-7895899999960148889988999998--------------2299989999984002------99
Q 000884          945 RRAYNCEIMLSKV-KVPLPELMRSVLALEDSAIDADQVENLI--------------KFCPTKEEMDLLKGYT------GD 1003 (1237)
Q Consensus       945 kRa~Ni~I~L~kl-k~~~~ei~~ail~lD~~~L~~e~i~~Ll--------------k~~Pt~eE~~~Lk~~~------~~ 1003 (1237)
                      +|+||++|+|+++ +++.++|+++|+++|..+|+.+.+..++              +++|+.+|++.|++|.      ++
T Consensus        75 kr~qni~I~L~~~~~~s~~~i~~ai~~~d~~~l~~~~l~~ll~~~~~~~~~~~~l~~~lPt~eE~~~l~~~~~~~~~~~d  154 (411)
T d1ux5a_          75 DISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKD  154 (411)
T ss_dssp             HHHHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSC
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             89999989998706999999999998368542487899999830210134799999817993789999999851445478


Q ss_pred             CCCCCHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             3324816899999826--76278889999899998998999999999999999999951789999999998413455468
Q 000884         1004 KEKLGKCEQFFLELMK--VPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGT 1081 (1237)
Q Consensus      1004 ~~~L~~~EqF~~~l~~--vp~~~~rL~~l~fk~~f~~~i~~i~~~l~~l~~A~~el~~S~~L~~iL~~IL~lGN~LN~gt 1081 (1237)
                      .+.|+.+|||+++++.  |++++.||++|.|+.+|.+.+.++...++.+..||++|++|+.|+.+|++||++|||||+|+
T Consensus       155 ~~~L~~~Eqf~~~l~~~~i~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~  234 (411)
T d1ux5a_         155 PNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTS  234 (411)
T ss_dssp             STTBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGG
T ss_pred             HHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             45438799999999862334499999999999999999999999999999999999957679999999999860625899


Q ss_pred             CCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76544444510065343210248864146789999860394311211013692788665499999999999998999999
Q 000884         1082 ARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQ 1161 (1237)
Q Consensus      1082 ~rg~A~GFkL~sL~KL~dtKs~d~k~tLLh~lv~~l~e~~pell~f~~eL~~l~~Askv~l~~L~~ei~~l~k~l~kl~~ 1161 (1237)
                        |+|.||+|++|.||.++|++|+++||||||++++++++|++++|.+||..++.|+++++.+|..++++|.+++.++++
T Consensus       235 --~~A~GFkL~sL~kL~d~Ks~d~~~tLL~yiv~~~~~~~p~l~~~~~el~~v~~a~~~~~~~l~~~~~~L~~~l~~i~~  312 (411)
T d1ux5a_         235 --KQAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVER  312 (411)
T ss_dssp             --GCCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHHCGGGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCEEEHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             --871235238988765211799980189999999998690753328778889988618999999999999999999999


Q ss_pred             HHHCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHC
Q ss_conf             8511347----87322459999999999999999999999999999999999770669999-9979999999997612
Q 000884         1162 ELSMSEN----DGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPAR-CPFEQAQIGVIRSADR 1234 (1237)
Q Consensus      1162 el~~s~~----d~~~~d~F~~~l~~Fl~~a~~~i~~L~~~~~~~~~~~~~l~~yFGEd~~~-~~~e~~fs~l~~F~d~ 1234 (1237)
                      ++.....    +....+.|..+|.+|++.++.++..+...+.++.+.|.+++.|||||+++ ...++||++|..|+..
T Consensus       313 ~~~~~~~~~~~~~~~~d~f~~~~~~fl~~~~~~~~~l~~~~~~~~~~~~~~~~yfGEd~~~~~~~~~fF~~~~~F~~~  390 (411)
T d1ux5a_         313 SVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINE  390 (411)
T ss_dssp             HHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             998620254000251116999999999999999999999999999999999998389988878999999999999999

>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=0  Score=460.41  Aligned_cols=298  Identities=25%  Similarity=0.463  Sum_probs=289.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             85112473111223312235778958999999601488899889999982299989999984002993324816899999
Q 000884          937 DKVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLE 1016 (1237)
Q Consensus       937 ~ki~iLd~kRa~Ni~I~L~klk~~~~ei~~ail~lD~~~L~~e~i~~Llk~~Pt~eE~~~Lk~~~~~~~~L~~~EqF~~~ 1016 (1237)
                      ++|+|||.||+|||+|+|++++++.++|+++|+++|..+|+.|.|+.|++++||.||++.|++|.++.+.|+.+|||+++
T Consensus         2 k~i~vLd~kr~~ni~I~L~~~k~~~~~i~~ai~~~D~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~   81 (332)
T d1v9da_           2 KELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVV   81 (332)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHHHTCGGGGGGSCHHHHHHHH
T ss_pred             CEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCHHHHHHHH
T ss_conf             53685667889889999800796999999999957712299999999988595999999998712795426859999999


Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             82676278889999899998998999999999999999999951789999999998413455468765444445100653
Q 000884         1017 LMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLK 1096 (1237)
Q Consensus      1017 l~~vp~~~~rL~~l~fk~~f~~~i~~i~~~l~~l~~A~~el~~S~~L~~iL~~IL~lGN~LN~gt~rg~A~GFkL~sL~K 1096 (1237)
                      |+.||+++.||++|.|+.+|.+.+.++...++.+..||++|++|.+|+.+|++||++|||||+|+.||+|.||+|++|.|
T Consensus        82 l~~ip~~~~Rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~~L~~iL~~GN~mN~g~~~g~A~GFkL~sL~k  161 (332)
T d1v9da_          82 MGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCK  161 (332)
T ss_dssp             HHTSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC------------------------CCHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCHHHHHH
T ss_conf             86624489999999999988999999999999999999999828259999999998600632434556555527899986


Q ss_pred             HHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf             43210248864146789999860394311211013692788665499999999999998999999851134787322459
Q 000884         1097 LTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENF 1176 (1237)
Q Consensus      1097 L~dtKs~d~k~tLLh~lv~~l~e~~pell~f~~eL~~l~~Askv~l~~L~~ei~~l~k~l~kl~~el~~s~~d~~~~d~F 1176 (1237)
                      |.++|++|+++||||||++++.+++|++++|.+||.++..|+++++++|..+++++.+++..+++++.....+...++.|
T Consensus       162 L~d~Ks~d~~~tLL~~iv~~~~~~~p~l~~~~~eL~~v~~ask~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~d~f  241 (332)
T d1v9da_         162 LRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKF  241 (332)
T ss_dssp             HHHSBCSSTTSBHHHHHHHHHHHSCCTTSSGGGGCTTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCH
T ss_pred             HHHCCCCCCCCCHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf             73132789873179999999998481313655666508888608899999999999999999999998460344400547


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999999999999999997706699999979999999997612
Q 000884         1177 SKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSADR 1234 (1237)
Q Consensus      1177 ~~~l~~Fl~~a~~~i~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~~fs~l~~F~d~ 1234 (1237)
                      ..+|..|++.++.++..|...+.++.+.|.+++.|||||+++...++||++|..|+..
T Consensus       242 ~~~~~~Fl~~a~~~l~~l~~~~~~~~~~~~~~~~yfgEd~~~~~~~efF~~~~~F~~~  299 (332)
T d1v9da_         242 VEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNM  299 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999948797879999999999999999

>d1d5ra2 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-36  Score=286.73  Aligned_cols=172  Identities=23%  Similarity=0.366  Sum_probs=154.0

Q ss_pred             HHHCCCCCCCCEEEEECCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCCCCE
Q ss_conf             33105899997023507579960787899951455403787999997230999958999837774013321012335851
Q 000884            5 RRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDIT   84 (1237)
Q Consensus         5 r~~~~~~~~lDL~yIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~   84 (1237)
                      |||.-.+.+|||||||+|||||  +||+++. |..|||++++|+.+|+++|+++ |+|||+++++.+     +.++|+.+
T Consensus         1 ~~~~~~~~~lDlt~It~riiv~--~~P~~~~-e~~~~~~i~~v~~~l~~~~~~~-~~v~nl~~~~~y-----~~~~~~~~   71 (174)
T d1d5ra2           1 RRYQEDGFDLDLTYIYPNIIAM--GFPAERL-EGVYRNNIDDVVRFLDSKHKNH-YKIYNLCAERHY-----DTAKFNCR   71 (174)
T ss_dssp             CCCCBTTTTBSEEEEETTEEEE--CCCBSSC-CTTCCCBHHHHHHHHHHHSSSC-EEEEEEESSCCC-----CTTSCSSC
T ss_pred             CCCCCCCCCCCEEEEECCEEEE--ECCCCCC-HHHHCCCHHHHHHHHHHCCCCC-EEEEECCCCCCC-----CHHHCCCE
T ss_conf             9754478256614995899999--2899871-7765389999999997505773-789863567779-----85883974


Q ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH
Q ss_conf             87487898999965199999999999999971998099999636996514688999999970799999999999985503
Q 000884           85 IMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPR  164 (1237)
Q Consensus        85 V~~yP~~d~~~P~p~l~~l~~~~~~i~~WL~~d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~~~~~~~aL~~~~~~~~~  164 (1237)
                      |.++||.|+++|  +++.|+.||+.++.|+..+++|+|+|||++|+||+ |+++||||+|++.+.++++|+++|..+|..
T Consensus        72 ~~~~~~~d~~~P--s~~~i~~~~~~~~~~~~~~~~~~v~VHC~~G~gRS-g~~~~ayL~~~~~~~~~~~al~~~~~~R~~  148 (174)
T d1d5ra2          72 VAQYPFEDHNPP--QLELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRT-GVMICAYLLHRGKFLKAQEALDFYGEVRTR  148 (174)
T ss_dssp             EEEEEECTTSCC--CHHHHHHHHHHHHHHHTTTSCSEEEEECSSSSHHH-HHHHHHHHHHHTSCSSHHHHHHHHHHHHCS
T ss_pred             EEEECCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf             999378899996--99999999999998750389987999959991351-999999999971789999999999998578


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             23125789999964999999999731378
Q 000884          165 ELLQLLSPLNPVPSQLRYLQYVSRRNVVS  193 (1237)
Q Consensus       165 ~~~~~v~~l~~~PSQ~RYv~Yf~~~~~~~  193 (1237)
                      + ..++    .+|||+|||+||+.++++.
T Consensus       149 ~-~~~v----~~psQ~ryl~yf~~~L~~~  172 (174)
T d1d5ra2         149 D-KKGV----TIPSQRRYVYYYSYLLKNH  172 (174)
T ss_dssp             S-SCSS----CSHHHHHHHHHHHHHHHHT
T ss_pred             C-CCCC----CCHHHHHHHHHHHHHHHHH
T ss_conf             9-9987----8999999999999999865

>d1d5ra1 b.7.1.1 (A:188-351) Pten tumor suppressor (Phoshphoinositide phosphatase), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Pten tumor suppressor (Phoshphoinositide phosphatase), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.4e-26  Score=212.62  Aligned_cols=126  Identities=23%  Similarity=0.453  Sum_probs=106.2

Q ss_pred             CCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEEE
Q ss_conf             86038976876426876899974039999826887435799808996467764302331356228996479610198599
Q 000884          199 DRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVL  278 (1237)
Q Consensus       199 ~~~l~L~~I~l~~iP~f~~~~gcrp~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~~y~~~d~~~i~~~~~~~i~GDV~i  278 (1237)
                      +.+|+|++|+|++||+|++ ||||||++||++.         +.+|++.....  +  ....+..+.++.++.|+|||+|
T Consensus         3 P~~L~L~~I~l~~vP~f~~-ggCrP~~~I~~~~---------~~v~ts~~~~~--~--~~~~~~~i~l~~~~~v~GDV~v   68 (141)
T d1d5ra1           3 PVALLFHKMMFETIPMFSG-GTCNPQFVVCQLK---------VKIYSSNSGPT--R--REDKFMYFEFPQPLPVCGDIKV   68 (141)
T ss_dssp             CCEEEEEEEEESSCCCSBT-TBCCEEEEEEETT---------EEEEECCSSCS--E--EETTEEEEEEEEEEEEESEEEE
T ss_pred             CEEEEEEEEEEECCCCCCC-CEEEEEEEEECCC---------EEEEECCCEEE--E--CCCCEEEEEECCCCEEECCEEE
T ss_conf             8869998999978873479-9017999999187---------07876474767--6--1462799991899988788999


Q ss_pred             EEEECCCCCCCCCEEEEEEECCCCCCCC----------EEEEECCCCCCCCCCCC--CCCCCCEEEEEEEEC
Q ss_conf             9993588434552189998104321299----------69960566856545779--899995899999506
Q 000884          279 ECISLNDDLEREEMMFRVVFNTAFIRSN----------ILMLNLDEVDILWNAKE--LFPKEFRAEILFSEM  338 (1237)
Q Consensus       279 ~~~h~~~~~~~~~~ifr~~FnT~FI~~n----------~l~l~k~eLD~~~~~k~--~fp~dF~vel~F~~~  338 (1237)
                      +|||++....++++||||||||+||++|          +|+|+|+|||.+|++++  +|++||+|||+|++.
T Consensus        69 ~~yh~~~~~~~~~~mF~~~FnT~FI~~~~~~~~~~~~~~L~l~k~eLD~a~kDk~~k~F~~~F~Vel~F~~~  140 (141)
T d1d5ra1          69 EFFHKQNKMLKKDKMFHFWVNTFFIPGPEEVDNDKEYLVLTLTKNDLDKANKDKANRYFSPNFKVKLYFTKT  140 (141)
T ss_dssp             EEEECCTTCSSCEEEEEEEEEGGGCC--------CCSEEEEEEGGGSTTGGGCTTCSSSCTTCEEEEEEEEC
T ss_pred             EEEECCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             999899986675279999998532017632456775389998050364312065457779984999999941

>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Kinase associated phosphatase (kap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9e-21  Score=169.15  Aligned_cols=162  Identities=11%  Similarity=0.076  Sum_probs=131.4

Q ss_pred             CCCCEEEEECCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCH-----HHHHCCCCCCCCEEE
Q ss_conf             999702350757996078789995145540378799999723099995899983777401-----332101233585187
Q 000884           12 PPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETK-----SLMANVLSEFDITIM   86 (1237)
Q Consensus        12 ~~lDL~yIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~-----s~~~~~~s~~~~~V~   86 (1237)
                      -+++.+|++.+|.++  ++|+.+. ++.|||..+|+..+.+..+    -.|+||+++.-.     ..+.+.+.+++..+.
T Consensus         8 l~~~~~~~~~~lgl~--~~Pg~~~-~~~~r~~~~dl~~L~~~gi----~~Vv~L~~~~E~~~~~~~~~~~~~~~~gi~~~   80 (176)
T d1fpza_           8 LSLSRVNCSQFLGLC--ALPGCKF-KDVRRNVQKDTEELKSCGI----QDIFVFCTRGELSKYRVPNLLDLYQQCGIITH   80 (176)
T ss_dssp             EECGGGTCCCEEEEE--SCTTCEE-TTEECCHHHHHHHHHHHTC----CEEEECCCHHHHHHTTCTTHHHHHHHTTCEEE
T ss_pred             CCCCCCCCCCCEEEE--CCCCCCC-CCCCCCHHHHHHHHHHCCC----CEEEEECCHHHHHHCCCCCHHHHHHHCCCEEE
T ss_conf             678766776604786--4899887-6430377999999982899----99999088666333178757999997699799


Q ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHH
Q ss_conf             48789899996519999999999999997199809999963699651468899999997079999999999998550323
Q 000884           87 DYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPREL  166 (1237)
Q Consensus        87 ~yP~~d~~~P~p~l~~l~~~~~~i~~WL~~d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~~~~~~~aL~~~~~~~~~~~  166 (1237)
                      ++||.|++.|  .++.+..+|+.+++||..+  +.|+|||++|.||| |+++||||++.+...+.++|++++.+.|..+ 
T Consensus        81 ~~p~~D~~~p--~~~~~~~~~~~i~~~l~~~--~~V~VHC~~G~gRt-g~v~~~~Li~~~~~~~~~~Ai~~vr~~R~~~-  154 (176)
T d1fpza_          81 HHPIADGGTP--DIASCCEIMEELTTCLKNY--RKTLIHSYGGLGRS-CLVAACLLLYLSDTISPEQAIDSLRDLRGSG-  154 (176)
T ss_dssp             ECCCCTTCCC--CHHHHHHHHHHHHHHHHTT--CCEEEECSSSSSHH-HHHHHHHHHHHCSSCCHHHHHHHHHHHHCTT-
T ss_pred             ECCCCCCCCH--HHHHHHHHHHHHHHHHHCC--CEEEEEECCCCCCH-HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC-
T ss_conf             6896577720--5699999999999999769--90899946787860-8999999999743899999999999858999-


Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             12578999996499999999973137
Q 000884          167 LQLLSPLNPVPSQLRYLQYVSRRNVV  192 (1237)
Q Consensus       167 ~~~v~~l~~~PSQ~RYv~Yf~~~~~~  192 (1237)
                        .+    ..++|.|||+||...+..
T Consensus       155 --~i----~t~~Q~~~l~~f~~~l~~  174 (176)
T d1fpza_         155 --AI----QTIKQYNYLHEFRDKLAA  174 (176)
T ss_dssp             --SS----CSHHHHHHHTTHHHHHHC
T ss_pred             --CC----CCHHHHHHHHHHHHHHHH
T ss_conf             --99----999999999999999995

>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: mRNA capping enzyme, triphosphatase domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=8.1e-20  Score=162.01  Aligned_cols=159  Identities=13%  Similarity=0.145  Sum_probs=125.4

Q ss_pred             EEEECCEEEEECCCCCCCC----CHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCCCCEEEECCCCC
Q ss_conf             2350757996078789995----145540378799999723099995899983777401332101233585187487898
Q 000884           17 LEISERVYVFNCCFTTDAW----EEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQY   92 (1237)
Q Consensus        17 ~yIT~RIiam~~~fPa~~~----~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d   92 (1237)
                      .-|++|+|+|  .+|..+-    .+..+|+++.+|+.+++.+|.++ |.|+||+.+..++.-. .+...+.++.++++.|
T Consensus        14 ~~I~~~fIa~--k~Pl~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~-~~vinlt~~~~~Y~~~-~~~~~gi~~~~~~~~~   89 (194)
T d1i9sa_          14 QPVAGRFLPL--KTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVKM-SLLVDLTNTSRFYDRN-DIEKEGIKYIKLQCKG   89 (194)
T ss_dssp             CCBTTTEEEE--CCCCCGGGTTTSCGGGCCCHHHHHHHHHHTTCCE-EEEEECSSCSSSSCTH-HHHTTTCEEEECCCCC
T ss_pred             CEECCCEEEE--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-EEEEECCCCCCCCCHH-HHHHCCCEEEEECCCC
T ss_conf             8707988883--5887767455557311689999999998617872-4999766888884989-9976383389854889


Q ss_pred             C-CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHCCCC
Q ss_conf             9-999651999999999999999719980999996369965146889999999707999999999999855032312578
Q 000884           93 E-GCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLS  171 (1237)
Q Consensus        93 ~-~~P~p~l~~l~~~~~~i~~WL~~d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~~~~~~~aL~~~~~~~~~~~~~~v~  171 (1237)
                      . .+|  +++.+..||+.|+.|+..+++++|+|||++|.||+ |+|+|||||+...+ +.++|+++|.++++..+     
T Consensus        90 ~~~~P--~~~~~~~f~~~v~~~~~~~~~~~V~VHC~~G~~Rs-g~~i~ayL~~~~~~-s~~~Ai~~~~~~Rp~~i-----  160 (194)
T d1i9sa_          90 HGECP--TTENTETFIRLCERFNERSPPELIGVHCTHGFNRT-GFLICAFLVEKMDW-SIEAAVATFAQARPPGI-----  160 (194)
T ss_dssp             TTCCC--CHHHHHHHHHHHTTC-----CCEEEEECSSSSHHH-HHHHHHHHHHHHCC-CHHHHHHHHHHHSTTCC-----
T ss_pred             CCCCC--CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-HHHHHHHHHHHCCC-CHHHHHHHHHHHCCCCC-----
T ss_conf             89897--86899999999999998489983999878877733-89999999998099-89999999998788987-----


Q ss_pred             CCCCCCHHHHHHH-HHHHHHC
Q ss_conf             9999964999999-9997313
Q 000884          172 PLNPVPSQLRYLQ-YVSRRNV  191 (1237)
Q Consensus       172 ~l~~~PSQ~RYv~-Yf~~~~~  191 (1237)
                         ..+.++|+|. ||+....
T Consensus       161 ---~~~~~~~~L~~~y~~~~~  178 (194)
T d1i9sa_         161 ---YKGDYLKELFRRYGDIEE  178 (194)
T ss_dssp             ---CCHHHHHHHHHHHSCGGG
T ss_pred             ---CCHHHHHHHHHHHHHHCC
T ss_conf             ---798999999999986426

>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Proline directed phosphatase CDC14b2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.3e-18  Score=149.99  Aligned_cols=153  Identities=14%  Similarity=0.145  Sum_probs=119.5

Q ss_pred             CCCCEEEEE-CCEEEEECCCCCCCC--CHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCCCCEEEEC
Q ss_conf             999702350-757996078789995--14554037879999972309999589998377740133210123358518748
Q 000884           12 PPDGLLEIS-ERVYVFNCCFTTDAW--EEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDY   88 (1237)
Q Consensus        12 ~~lDL~yIT-~RIiam~~~fPa~~~--~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~y   88 (1237)
                      ...||+||+ .++|||  ++|....  ....+++..+++..+|..++-   -.|+|||++.|+..   .+..++.++.++
T Consensus        14 engD~~wI~P~~~ia~--s~P~~~~~~~~~~~~~~~~~~l~~l~~~gi---~~Ii~l~~~~~~~~---~~~~~gi~~~~~   85 (182)
T d1ohea2          14 ENGDLNWIIPDRFIAF--CGPHSRARLESGYHQHSPETYIQYFKNHNV---TTIIRLNKRMYDAK---RFTDAGFDHHDL   85 (182)
T ss_dssp             GGTCEEEEETTTEEEE--CCCCSSCBCSTTCCBCCTHHHHHHHHHTTE---EEEEECSCCSSCTH---HHHTTTCEEEEC
T ss_pred             CCCCCCEECCCCEEEE--CCCCCCCCCCCCCCCCCHHHHHHHHHHCCC---CEEEEECCCCCCCC---CCCCCCCEEEEC
T ss_conf             4798615866876998--378766633335543599999999986499---89999068876864---111189579961


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHC
Q ss_conf             78989999651999999999999999719980999996369965146889999999707999999999999855032312
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQ  168 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~i~~WL~~d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~~~~~~~aL~~~~~~~~~~~~~  168 (1237)
                      |+.|+++|  +++.+..|++.+.     +.++.|+|||++|.||| |+|+||||++.+.+ +.++|+.++..+|+ +.  
T Consensus        86 p~~D~~~P--~~~~i~~~i~~~~-----~~~~~V~VHC~~G~gRs-gt~~a~yL~~~~~~-~~~~Al~~vr~~Rp-~~--  153 (182)
T d1ohea2          86 FFADGSTP--TDAIVKEFLDICE-----NAEGAIAVHSKAGLGRT-GTLIACYIMKHYRM-TAAETIAWVRICRP-GS--  153 (182)
T ss_dssp             CCCTTCCC--CHHHHHHHHHHHH-----SCSSEEEEECSSSSHHH-HHHHHHHHHHHHCC-CHHHHHHHHHHHST-TC--
T ss_pred             CCCCCCCC--CHHHHHHHHHHHH-----CCCCCEEEEECCCCCCH-HHHHHHHHHHHCCC-CHHHHHHHHHHHCC-CC--
T ss_conf             77789994--9999999999998-----08994899858997643-99999999997399-99999999998788-87--


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             5789999964999999999731
Q 000884          169 LLSPLNPVPSQLRYLQYVSRRN  190 (1237)
Q Consensus       169 ~v~~l~~~PSQ~RYv~Yf~~~~  190 (1237)
                            .+..|.+|+.+++..+
T Consensus       154 ------i~~~qq~fl~~~~~~l  169 (182)
T d1ohea2         154 ------VIGPQQQFLVMKQTNL  169 (182)
T ss_dssp             ------SCTHHHHHHHHHHHHH
T ss_pred             ------CCCHHHHHHHHHHHHH
T ss_conf             ------2299899999999999

>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human (Homo sapiens), pr-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Protein tyrosine phosphatase type IVa
species: Human (Homo sapiens), pr-1 [TaxId: 9606]

Probab=99.71  E-value=7.2e-17  Score=139.99  Aligned_cols=147  Identities=16%  Similarity=0.196  Sum_probs=114.9

Q ss_pred             CCCEEEEECCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCCCCEEEECCCCC
Q ss_conf             99702350757996078789995145540378799999723099995899983777401332101233585187487898
Q 000884           13 PDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQY   92 (1237)
Q Consensus        13 ~lDL~yIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d   92 (1237)
                      |-|++|++.|.|++.  .|.+..        +.+-..+|.++.   --.|+||+++.|+..   .+...+..+.++||.|
T Consensus         1 ~~~~~y~~~rfI~tq--~P~~~t--------~~~f~~~l~~~~---i~~Iv~l~e~~y~~~---~~~~~~i~~~~~~~~d   64 (152)
T d1rxda_           1 PVEVTYKNMRFLITH--NPTNAT--------LNKFIEELKKYG---VTTIVRVCEATYDTT---LVEKEGIHVLDWPFDD   64 (152)
T ss_dssp             CEEEEETTEEEEECC--CCCGGG--------HHHHHHHHHHTT---EEEEEECSCCCSCCH---HHHHTTCEEEECCC--
T ss_pred             CEEEEECCCEEEEEC--CCCCHH--------HHHHHHHHHHHC---CEEEEECCCCCCCCH---HEEECCEEEEEEECCC
T ss_conf             956860572389978--997006--------999999999839---818830134668801---4015565899865789


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHCCCCC
Q ss_conf             99996519999999999999997199809999963699651468899999997079999999999998550323125789
Q 000884           93 EGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSP  172 (1237)
Q Consensus        93 ~~~P~p~l~~l~~~~~~i~~WL~~d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~~~~~~~aL~~~~~~~~~~~~~~v~~  172 (1237)
                      +..|  +++.+..++..++.|+..+.++.|+|||.+|.||+ |+++||||++.+.  +.++|++++..+|+ +      .
T Consensus        65 ~~~p--~~~~~~~~~~~~~~~~~~~~~~~v~VHC~~G~gRs-g~~~a~~l~~~~~--~~~~av~~vr~~R~-~------~  132 (152)
T d1rxda_          65 GAPP--SNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRA-PVLVALALIEGGM--KYEDAVQFIRQKRR-G------A  132 (152)
T ss_dssp             CCCC--CHHHHHHHHHHHHHHHHHSTTCEEEEECSSSSTTH-HHHHHHHHHHTTC--CHHHHHHHHHTTCT-T------C
T ss_pred             CCCC--CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH-HHHHHHHHHHHCC--CHHHHHHHHHHHCC-C------C
T ss_conf             9999--98999999999999998489997899976775208-9999999999595--99999999997689-8------8


Q ss_pred             CCCCCHHHHHHHHHHHH
Q ss_conf             99996499999999973
Q 000884          173 LNPVPSQLRYLQYVSRR  189 (1237)
Q Consensus       173 l~~~PSQ~RYv~Yf~~~  189 (1237)
                        .+..|.+||.+|...
T Consensus       133 --i~~~Q~~fl~~y~~~  147 (152)
T d1rxda_         133 --FNSKQLLYLEKYRPK  147 (152)
T ss_dssp             --CCHHHHHHHHHCCCC
T ss_pred             --CCHHHHHHHHHHHHH
T ss_conf             --750999999999999

>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]

Probab=98.99  E-value=1e-08  Score=79.19  Aligned_cols=140  Identities=11%  Similarity=0.062  Sum_probs=92.6

Q ss_pred             EEEECCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCCCCEEEECCCCCCCCC
Q ss_conf             23507579960787899951455403787999997230999958999837774013321012335851874878989999
Q 000884           17 LEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCP   96 (1237)
Q Consensus        17 ~yIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~P   96 (1237)
                      +.|+++|++-  ++.+..-            ..+|... +-  =.|.|++.+....    .....+....++++.|++..
T Consensus         5 ~eI~p~lylG--~~~~a~~------------~~~l~~~-gI--~~Iin~~~~~~~~----~~~~~~~~y~~~~~~D~~~~   63 (144)
T d1mkpa_           5 VEILPFLYLG--CAKDSTN------------LDVLEEF-GI--KYILNVTPNLPNL----FENAGEFKYKQIPISDHWSQ   63 (144)
T ss_dssp             EEEETTEEEE--CTTSCCC------------HHHHHHT-TE--EEEEECCSSCCCE----EEEETTEEEEECCCCCSTTC
T ss_pred             CEEECCEEEC--CHHHHCC------------HHHHHHC-CC--CEEEECCCCCCCC----CCCCCCEEEEEEEEECCCCC
T ss_conf             7477988997--8137549------------9999757-98--5999704667853----24788628999997147888


Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHCCCCCCCCC
Q ss_conf             65199999999999999971998099999636996514688999999970799999999999985503231257899999
Q 000884           97 LLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPV  176 (1237)
Q Consensus        97 ~p~l~~l~~~~~~i~~WL~~d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~~~~~~~aL~~~~~~~~~~~~~~v~~l~~~  176 (1237)
                      . -...+..+++.++..+..+  ..|+|||++|.+|+ |++++||||+.+.+ +.++|++++.++++ .       ..+.
T Consensus        64 ~-i~~~~~~~~~~i~~~~~~~--~~VlVHC~~G~~RS-~~vv~aYLm~~~~~-~~~~A~~~v~~~Rp-~-------i~pn  130 (144)
T d1mkpa_          64 N-LSQFFPEAISFIDEARGKN--CGVLVHSLAGISRS-VTVTVAYLMQKLNL-SMNDAYDIVKMKKS-N-------ISPN  130 (144)
T ss_dssp             C-SGGGHHHHHHHHHHHHHTT--CEEEEECSSCSHHH-HHHHHHHHHHHHTC-CHHHHHHHHHHHCT-T-------CCCC
T ss_pred             C-HHHHHHHHHHHHHHHHHCC--CEEEEEECCCCCCH-HHHHHHHHHHHHCC-CHHHHHHHHHHHCC-C-------CCCC
T ss_conf             8-8999999999887766226--33899955566606-99999999998598-99999999999899-8-------8999


Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             64999999999731
Q 000884          177 PSQLRYLQYVSRRN  190 (1237)
Q Consensus       177 PSQ~RYv~Yf~~~~  190 (1237)
                      .++.+.|..|++.|
T Consensus       131 ~~f~~qL~~~e~~L  144 (144)
T d1mkpa_         131 FNFMGQLLDFERTL  144 (144)
T ss_dssp             STTHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             89999999999659

>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: VH1-related dual-specificity phosphatase, VHR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=8e-08  Score=72.43  Aligned_cols=154  Identities=18%  Similarity=0.177  Sum_probs=93.2

Q ss_pred             CCCCCCCCEEEEECCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH---HCCCCCCCCE
Q ss_conf             0589999702350757996078789995145540378799999723099995899983777401332---1012335851
Q 000884            8 FFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLM---ANVLSEFDIT   84 (1237)
Q Consensus         8 ~~~~~~lDL~yIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~---~~~~s~~~~~   84 (1237)
                      +|..+..=.+.|+++|++-+  +++..        +    ..+|.++ +-  =.|.|++++......   ...+...+.+
T Consensus        15 ~~~~p~~p~~~I~~~LylG~--~~~a~--------d----~~~L~~~-gI--~~Iin~~~~~~~~~~~~~~~~~~~~~i~   77 (178)
T d1vhra_          15 CYSLPSQPCNEVTPRIYVGN--ASVAQ--------D----IPKLQKL-GI--THVLNAAEGRSFMHVNTNANFYKDSGIT   77 (178)
T ss_dssp             CCCCCSSSEEEEETTEEEEC--HHHHT--------C----HHHHHHH-TC--CEEEETTBSSSTTSBCCCHHHHTTTTCE
T ss_pred             CCCCCCCCCCEEECCEEECC--HHHHC--------C----HHHHHHC-CC--EEEEECCCCCCCCCCCCCCCCCCCCCCE
T ss_conf             50279898588608978978--33755--------9----9999986-99--7999767644444566661200258968


Q ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH
Q ss_conf             87487898999965199999999999999971998099999636996514688999999970799999999999985503
Q 000884           85 IMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPR  164 (1237)
Q Consensus        85 V~~yP~~d~~~P~p~l~~l~~~~~~i~~WL~~d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~~~~~~~aL~~~~~~~~~  164 (1237)
                      ..++|+.|.... .-...+...++.|+..+..+. +-|+|||++|.+|+ |++++||||+...+ +.++|++++..+++ 
T Consensus        78 y~~ipi~D~~~~-~i~~~~~~~~~fi~~~~~~~~-~~VLVHC~~G~sRS-~~vv~aYLm~~~~~-s~~~A~~~vr~~R~-  152 (178)
T d1vhra_          78 YLGIKANDTQEF-NLSAYFERAADFIDQALAQKN-GRVLVHCREGYSRS-PTLVIAYLMMRQKM-DVKSALSIVRQNRE-  152 (178)
T ss_dssp             EEECCCCCSTTC-CGGGGHHHHHHHHHHHHTSTT-CCEEEECSSSSSHH-HHHHHHHHHHHSCC-CHHHHHHHHHHHSC-
T ss_pred             EEEEECCCCCCH-HHHHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCH-HHHHHHHHHHHCCC-CHHHHHHHHHHCCC-
T ss_conf             999835888632-279999999998654430478-42999838777657-99999999982198-99999999996799-


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             231257899999649999999997313
Q 000884          165 ELLQLLSPLNPVPSQLRYLQYVSRRNV  191 (1237)
Q Consensus       165 ~~~~~v~~l~~~PSQ~RYv~Yf~~~~~  191 (1237)
                       .       .+..+..+-|.-|+..+.
T Consensus       153 -i-------~pn~~f~~qL~~~e~~L~  171 (178)
T d1vhra_         153 -I-------GPNDGFLAQLCQLNDRLA  171 (178)
T ss_dssp             -C-------CCCHHHHHHHHHHHHHHH
T ss_pred             -C-------CCCHHHHHHHHHHHHHHH
T ss_conf             -9-------989899999999999999

>d2pt0a1 c.45.1.4 (A:34-346) Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA {Selenomonas ruminantium [TaxId: 971]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA
domain: Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA
species: Selenomonas ruminantium [TaxId: 971]

Probab=98.64  E-value=4.1e-08  Score=74.59  Aligned_cols=72  Identities=19%  Similarity=0.156  Sum_probs=56.8

Q ss_pred             CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             585187487898999965199999999999999971998099999636996514688999999970799999999999
Q 000884           81 FDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMI  158 (1237)
Q Consensus        81 ~~~~V~~yP~~d~~~P~p~l~~l~~~~~~i~~WL~~d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~~~~~~~aL~~~  158 (1237)
                      ++.+....||.||+.|  ..+.+..|+..+.   ....+..+++||++|.||| |+++++|+|......+.++++..-
T Consensus       179 ~g~~Y~ripi~D~~~P--~~~~id~~i~~i~---~~~~~~~ivvhc~~g~~rt-~~~~~~~~~~~~~~~~~~d~i~rq  250 (313)
T d2pt0a1         179 AGMRYFRIAATDHVWP--TPENIDRFLAFYR---TLPQDAWLHFHCEAGVGRT-TAFMVMTDMLKNPSVSLKDILYRQ  250 (313)
T ss_dssp             TTCEEEEEEECTTSCC--CHHHHHHHHHHHH---TCCTTCEEEEECSSSSHHH-HHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred             HCCEEEEECCCCCCCC--CHHHHHHHHHHHH---HCCCCCCEEEECCCCCCHH-HHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             3966898157888898--9799999999998---5799997899889999689-999999999976489999999988

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Putative phosphatase At1g05000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.49  E-value=2.5e-07  Score=68.77  Aligned_cols=142  Identities=15%  Similarity=0.180  Sum_probs=86.3

Q ss_pred             CCCCEEEEECCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCCCCEEEECCCC
Q ss_conf             99970235075799607878999514554037879999972309999589998377740133210123358518748789
Q 000884           12 PPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQ   91 (1237)
Q Consensus        12 ~~lDL~yIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~   91 (1237)
                      +++-...|+++|+--  +.|+.           .+ ..+|.+. +=  =.|+||+.+.......+.+...+.++.++|..
T Consensus         4 pp~nF~~V~~~lyRs--~~~t~-----------~~-~~~L~~l-gI--ktIidLr~~~e~~~~~~~~~~~gi~~~~ip~~   66 (151)
T d1xria_           4 PPLNFSMVDNGIFRS--GFPDS-----------AN-FSFLQTL-GL--RSIIYLCPEPYPESNLQFLKSNGIRLFQFGIE   66 (151)
T ss_dssp             CCTTCEEEETTEEEE--SCCCH-----------HH-HHHHHHH-TC--SEEEECCSSCCCHHHHHHHHHHTCEEEECCCC
T ss_pred             CCCCCCEECCCCEEC--CCCCH-----------HH-HHHHHHC-CC--CEEEECCCCCHHHCCCCHHHHCCCEEEECCCC
T ss_conf             971124335895665--99898-----------77-9999987-99--88997887401020200365569627615732


Q ss_pred             CCCCCCC--CHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHCC
Q ss_conf             8999965--19999999999999997199809999963699651468899999997079999999999998550323125
Q 000884           92 YEGCPLL--TMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQL  169 (1237)
Q Consensus        92 d~~~P~p--~l~~l~~~~~~i~~WL~~d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~~~~~~~aL~~~~~~~~~~~~~~  169 (1237)
                      +...+..  .-+.+..+++.+    ....+.-++|||.+||+|| |++++|||...|.  ..+++++-|.+...     +
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~pvlvHC~~GkdRT-G~v~a~~l~~~g~--~~~~i~~dy~~~~~-----~  134 (151)
T d1xria_          67 GNKEPFVNIPDHKIRMALKVL----LDEKNHPVLIHCKRGKHRT-GCLVGCLRKLQKW--CLTSIFDEYQRFAA-----A  134 (151)
T ss_dssp             CCCGGGCCCCHHHHHHHHHHH----HCGGGCSEEEECSSSSSHH-HHHHHHHHHHTTB--CHHHHHHHHHHHHG-----G
T ss_pred             CCCCCCCCCCHHHHHHHHHHH----HCCCCCCEEEECCCCCHHH-HHHHHHHHHHCCC--CHHHHHHHHHHHCC-----C
T ss_conf             243311105399999999999----6378997787748984078-9999999999499--99999999998656-----7


Q ss_pred             CCCCCCCCHHHHHHHHH
Q ss_conf             78999996499999999
Q 000884          170 LSPLNPVPSQLRYLQYV  186 (1237)
Q Consensus       170 v~~l~~~PSQ~RYv~Yf  186 (1237)
                      .    ...-+.+||+-|
T Consensus       135 ~----~~~~~~~fiE~f  147 (151)
T d1xria_         135 K----ARVSDQRFMEIF  147 (151)
T ss_dssp             G----CCHHHHHHHHTC
T ss_pred             C----CCHHHHHHHHHH
T ss_conf             4----458999999971

>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pac-1 [TaxId: 9606]

Probab=98.32  E-value=7.5e-07  Score=65.16  Aligned_cols=118  Identities=12%  Similarity=0.080  Sum_probs=74.9

Q ss_pred             EEEEECCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCCCCEEEECCCCCCCC
Q ss_conf             02350757996078789995145540378799999723099995899983777401332101233585187487898999
Q 000884           16 LLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGC   95 (1237)
Q Consensus        16 L~yIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~   95 (1237)
                      -+.|+++|++-  ++.+.           .+ ..+|.++-=.   .|.|++++...      ...-.....++|+.|.+.
T Consensus         4 p~eI~p~LylG--~~~~a-----------~~-~~~L~~~gI~---~Iin~~~~~~~------~~~~~~~y~~i~i~D~~~   60 (145)
T d1m3ga_           4 PVEILPYLFLG--SCSHS-----------SD-LQGLQACGIT---AVLNVSASCPN------HFEGLFRYKSIPVEDNQM   60 (145)
T ss_dssp             CEEETTTEEEC--CSTHH-----------HH-HHHHHHHTCS---EEEECSSSSSE------EECSSSEEEECCCCCSTT
T ss_pred             CEEEECCEEEC--CHHHH-----------CC-HHHHHHCCCC---EEEEECCCCCC------CCCCCEEEEEEECCCCCH
T ss_conf             80898998892--82144-----------49-9999985995---99994378876------787752799984267842


Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             965199999999999999971998099999636996514688999999970799999999999985
Q 000884           96 PLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQ  161 (1237)
Q Consensus        96 P~p~l~~l~~~~~~i~~WL~~d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~~~~~~~aL~~~~~~  161 (1237)
                      ... ...+..++..++..+..+  +-|+|||.+|.+|+ +++++||||+...+ +.++|++++.++
T Consensus        61 ~~i-~~~~~~~~~~i~~~~~~~--~~VlVHC~~G~sRS-~~v~~aYLm~~~~~-~~~~A~~~v~~~  121 (145)
T d1m3ga_          61 VEI-SAWFQEAIGFIDWVKNSG--GRVLVHSQAGISRS-ATICLAYLMQSRRV-RLDEAFDFVKQR  121 (145)
T ss_dssp             CCC-TTSHHHHHHHHHHHHHTT--CCEEECCSSSSSHH-HHHHHHHHHHTTCC-HHHHHHHHHSCS
T ss_pred             HHH-HHHHHHHHHHHHHHHCCC--CEEEEECCCCCCCH-HHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_conf             568-999999999888764057--46999815555607-99999999998697-999999999998

>d1g4us2 c.45.1.2 (S:297-539) SptP tyrosine phosphatase, catalytic domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: SptP tyrosine phosphatase, catalytic domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.25  E-value=5.1e-06  Score=58.99  Aligned_cols=92  Identities=14%  Similarity=0.081  Sum_probs=63.1

Q ss_pred             EEEC-CCCCCCCCCCCHHHHHHHHHHHHHHHHC-------CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             8748-7898999965199999999999999971-------9980999996369965146889999999707999999999
Q 000884           85 IMDY-PRQYEGCPLLTMEVIHHFLRSTESWLSL-------GQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLD  156 (1237)
Q Consensus        85 V~~y-P~~d~~~P~p~l~~l~~~~~~i~~WL~~-------d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~~~~~~~aL~  156 (1237)
                      ..+| -|.||+.| ...+.++.|++.+..+-..       ..+.-+||||.+|.||| |+.||+..+....--...+++.
T Consensus       137 h~~y~~Wpd~~vP-~~~~~l~~li~~v~~~~~~~~~~~~~~~~~PivVHCsaGvGRT-Gtf~a~~~l~~~~~vdv~~iv~  214 (243)
T d1g4us2         137 VLHVKNWPDHQPL-PSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRT-GTMAAALVLKDNPHSNLEQVRA  214 (243)
T ss_dssp             EEEECSCCTTSCC-SCHHHHHHHHHHHHC-------------CCCEEEECSSSSSHH-HHHHHHHHHHHCTTCCHHHHHH
T ss_pred             EEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC-HHHHHHHHHHHCCCCCHHHHHH
T ss_conf             9976376888999-9879999999999999875210135788899899978988710-5999999997649999999999


Q ss_pred             HHHHHCHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             99985503231257899999649999999
Q 000884          157 MIYRQAPRELLQLLSPLNPVPSQLRYLQY  185 (1237)
Q Consensus       157 ~~~~~~~~~~~~~v~~l~~~PSQ~RYv~Y  185 (1237)
                      .+.++|+..+   |    ....|-+||+-
T Consensus       215 ~lR~qR~~~m---V----qt~~QY~flY~  236 (243)
T d1g4us2         215 DFRDSRNNRM---L----EDASQFVQLKA  236 (243)
T ss_dssp             HHHTTSCTTT---T----CCHHHHHHHHH
T ss_pred             HHHHCCCCCC---C----CCHHHHHHHHH
T ss_conf             9985489988---8----99999999999

>d1wcha_ c.45.1.2 (A:) Tyrosine-protein phosphatase, non-receptor type 13 (PTPL1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine-protein phosphatase, non-receptor type 13 (PTPL1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00024  Score=46.50  Aligned_cols=84  Identities=8%  Similarity=0.058  Sum_probs=55.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC----CCCHHHHHHHHHHHCHH
Q ss_conf             78989999651999999999999999719980999996369965146889999999707----99999999999985503
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQ----YSGEYKTLDMIYRQAPR  164 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~i~~WL~~d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~----~~~~~~aL~~~~~~~~~  164 (1237)
                      -|.||++| .....++.|++.+...   ...+=+||||.+|.||| |+.||+..+...+    .-...+++..+..+|+ 
T Consensus       206 ~Wpd~~vP-~~~~~~l~~l~~v~~~---~~~~PivVHCsaGvGRt-G~fia~d~~l~~l~~~~~vdv~~~v~~lR~qR~-  279 (308)
T d1wcha_         206 AWPDHDTP-SQPDDLLTFISYMRHI---HRSGPIITHCSAGIGRS-GTLICIDVVLGLISQDLDFDISDLVRCMRLQRH-  279 (308)
T ss_dssp             SCCTTSCC-SCHHHHHHHHHHHHHH---CCSSCEEEECSSSSHHH-HHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTST-
T ss_pred             CCCCCCCC-CCCHHHHHHHHHHHHH---CCCCCEEEEECCCCCHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC-
T ss_conf             75334557-8814699999999985---06784799834555333-899999999999970698789999999985276-


Q ss_pred             HHHCCCCCCCCCCHHHHHHHH
Q ss_conf             231257899999649999999
Q 000884          165 ELLQLLSPLNPVPSQLRYLQY  185 (1237)
Q Consensus       165 ~~~~~v~~l~~~PSQ~RYv~Y  185 (1237)
                      +   .|    ....|-+|++.
T Consensus       280 ~---~V----qt~~QY~f~y~  293 (308)
T d1wcha_         280 G---MV----QTEDQYIFCYQ  293 (308)
T ss_dssp             T---CS----CSHHHHHHHHH
T ss_pred             C---CC----CCHHHHHHHHH
T ss_conf             6---57----98999999999

>d2shpa1 c.45.1.2 (A:219-525) Tyrosine phosphatase {Human (Homo sapiens), shp-2 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Human (Homo sapiens), shp-2 [TaxId: 9606]

Probab=97.53  E-value=0.00018  Score=47.36  Aligned_cols=88  Identities=15%  Similarity=0.154  Sum_probs=57.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCC----C---CCHHHHHHHHHH
Q ss_conf             78989999651999999999999999719-980999996369965146889999999707----9---999999999998
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSLG-QHNVLMMHCERGGWPVLAFMLAALLIYRKQ----Y---SGEYKTLDMIYR  160 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~i~~WL~~d-~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~----~---~~~~~aL~~~~~  160 (1237)
                      -|.|+|.| .....++.|++.+..+.... ...-+||||.+|.||| |+.||...+...+    .   -...+++..+.+
T Consensus       204 ~Wpd~~vP-~~~~~ll~li~~v~~~~~~~~~~~PivVHCs~GvgRt-Gtfia~~~~l~~l~~~~~~~~vdv~~~V~~lR~  281 (307)
T d2shpa1         204 TWPDHGVP-SDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRT-GTFIVIDILIDIIREKGVDCDIDVPKTIQMVRS  281 (307)
T ss_dssp             CCCSSSCC-SCHHHHHHHHHHHHHHHHHSTTCCCEEEECSSSSHHH-HHHHHHHHHHHHHHHHCTTSEECHHHHHHHHHT
T ss_pred             CCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHH-HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             88988978-9837899999999998641467898799948998579-999999999999997199976589999999985


Q ss_pred             HCHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             55032312578999996499999999
Q 000884          161 QAPRELLQLLSPLNPVPSQLRYLQYV  186 (1237)
Q Consensus       161 ~~~~~~~~~v~~l~~~PSQ~RYv~Yf  186 (1237)
                      +|+ +   .|    ....|-.|++..
T Consensus       282 qR~-~---~V----qt~~QY~fiy~~  299 (307)
T d2shpa1         282 QRS-G---MV----QTEAQYRSIYMA  299 (307)
T ss_dssp             TST-T---SS----CCHHHHHHHHHH
T ss_pred             HCC-C---CC----CCHHHHHHHHHH
T ss_conf             254-3---14----999999999999

>d1jlna_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus), ptp-sl/br7 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Mouse (Mus musculus), ptp-sl/br7 [TaxId: 10090]

Probab=97.51  E-value=0.0002  Score=47.08  Aligned_cols=88  Identities=8%  Similarity=0.094  Sum_probs=57.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHCC----CCCHHHHHHHHHHHCH
Q ss_conf             7898999965199999999999999971-9980999996369965146889999999707----9999999999998550
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSL-GQHNVLMMHCERGGWPVLAFMLAALLIYRKQ----YSGEYKTLDMIYRQAP  163 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~i~~WL~~-d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~----~~~~~~aL~~~~~~~~  163 (1237)
                      -|.||+.|. ....++.|++.+..+... ....-+||||-+|.||| |+.||...+...+    .-...+++..+..+|+
T Consensus       192 ~Wpd~~vP~-~~~~~l~~i~~v~~~~~~~~~~~PivVHCsaGvGRt-G~fial~~~l~~l~~~~~vdv~~~v~~lR~qR~  269 (297)
T d1jlna_         192 SWPDHKTPD-SAQPLLQLMLDVEEDRLASEGRGPVVVHCSAGIGRT-GCFIATSIGCQQLKEEGVVDALSIVCQLRVDRG  269 (297)
T ss_dssp             CSCTTSSCS-CSHHHHHHHHHHHHHHHTCTTSCCEEEESSSSSHHH-HHHHHHHHHHHHHHHHSEECHHHHHHHHHHHST
T ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf             868889899-848899999999987750367871688744532330-279999999999860699899999999985255


Q ss_pred             HHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             32312578999996499999999
Q 000884          164 RELLQLLSPLNPVPSQLRYLQYV  186 (1237)
Q Consensus       164 ~~~~~~v~~l~~~PSQ~RYv~Yf  186 (1237)
                       +   .|    ....|-+|++..
T Consensus       270 -~---~V----qt~~QY~Fiy~~  284 (297)
T d1jlna_         270 -G---MV----QTSEQYEFVHHA  284 (297)
T ss_dssp             -T---SS----CSHHHHHHHHHH
T ss_pred             -C---CC----CCHHHHHHHHHH
T ss_conf             -5---46----989999999999

>d1lara1 c.45.1.2 (A:1307-1623) RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: RPTP Lar
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00049  Score=44.19  Aligned_cols=87  Identities=14%  Similarity=0.193  Sum_probs=56.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC----CCCHHHHHHHHHHHCHH
Q ss_conf             78989999651999999999999999719980999996369965146889999999707----99999999999985503
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQ----YSGEYKTLDMIYRQAPR  164 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~i~~WL~~d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~----~~~~~~aL~~~~~~~~~  164 (1237)
                      -|.|++.| ..-..++.|++.+... ......-+||||.+|.||+ |+.||...+....    .-...+++..+.++|+ 
T Consensus       181 ~Wpd~~~P-~~~~~~l~~i~~v~~~-~~~~~~PivVHCs~GvGRt-G~f~al~~~~~~l~~~~~vdv~~~v~~lR~qR~-  256 (317)
T d1lara1         181 AWPDHGVP-EYPTPILAFLRRVKAC-NPLDAGPMVVHCSAGVGRT-GCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRN-  256 (317)
T ss_dssp             CSCSSSCC-SCSHHHHHHHHHHHHH-SCTTCCCEEEESSSSSSHH-HHHHHHHHHHHHHHHHSCCCHHHHHHHHHTTST-
T ss_pred             CCCCCCCC-CCHHHHHHHHHHHHHH-HCCCCCCEEEEECCCCCCE-EEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHCC-
T ss_conf             75557988-9989999999999974-0678873899952543214-034046758999855798799999999974244-


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             2312578999996499999999
Q 000884          165 ELLQLLSPLNPVPSQLRYLQYV  186 (1237)
Q Consensus       165 ~~~~~v~~l~~~PSQ~RYv~Yf  186 (1237)
                         ..|    ....|-+|+++.
T Consensus       257 ---~~V----~t~~QY~fiy~~  271 (317)
T d1lara1         257 ---YMV----QTEDQYVFIHEA  271 (317)
T ss_dssp             ---TSS----CSHHHHHHHHHH
T ss_pred             ---CCC----CCHHHHHHHHHH
T ss_conf             ---514----999999999999

>d1l8ka_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens), T-cell [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Human (Homo sapiens), T-cell [TaxId: 9606]

Probab=97.37  E-value=0.00016  Score=47.84  Aligned_cols=88  Identities=18%  Similarity=0.128  Sum_probs=56.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCC----CHHHHHHHHHHHCH
Q ss_conf             78989999651999999999999999719-98099999636996514688999999970799----99999999998550
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSLG-QHNVLMMHCERGGWPVLAFMLAALLIYRKQYS----GEYKTLDMIYRQAP  163 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~i~~WL~~d-~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~~~----~~~~aL~~~~~~~~  163 (1237)
                      -|.|++.|. ....++.|+..+....... ...-+||||.+|.||| |+.||...+....-.    ...+++..+.++|+
T Consensus       175 ~Wpd~~~P~-~~~~~~~l~~~v~~~~~~~~~~~PivVHCs~GvgRt-Gtf~al~~~~~~l~~~~~vdv~~~v~~lR~qR~  252 (273)
T d1l8ka_         175 TWPDFGVPE-SPASFLNFLFKVRESGSLNPDHGPAVIHCSAGIGRS-GTFSLVDTCLVLMEKGDDINIKQVLLNMRKYRM  252 (273)
T ss_dssp             CCCSSSCCS-CSHHHHHHHHHHHHTTTTSTTSCCEEEEESSSSSHH-HHHHHHHHHHHHSSSSCCCCHHHHHHHHTTTBT
T ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCE-EHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf             445589999-879999999999986302799862899704664314-329999999999973798699999999997342


Q ss_pred             HHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             32312578999996499999999
Q 000884          164 RELLQLLSPLNPVPSQLRYLQYV  186 (1237)
Q Consensus       164 ~~~~~~v~~l~~~PSQ~RYv~Yf  186 (1237)
                       +   .|    ..+.|-+|++..
T Consensus       253 -~---~V----qt~~QY~f~y~~  267 (273)
T d1l8ka_         253 -G---LI----QTPDQLRFSYMA  267 (273)
T ss_dssp             -T---CS----CSHHHHHHHHHH
T ss_pred             -C---CC----CCHHHHHHHHHH
T ss_conf             -1---04----999999999999

>d1fpra_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens), shp-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Human (Homo sapiens), shp-1 [TaxId: 9606]

Probab=97.28  E-value=0.00083  Score=42.44  Aligned_cols=92  Identities=14%  Similarity=0.186  Sum_probs=58.0

Q ss_pred             EEEEC---CCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCC-------CCCHH
Q ss_conf             18748---78989999651999999999999999719-980999996369965146889999999707-------99999
Q 000884           84 TIMDY---PRQYEGCPLLTMEVIHHFLRSTESWLSLG-QHNVLMMHCERGGWPVLAFMLAALLIYRKQ-------YSGEY  152 (1237)
Q Consensus        84 ~V~~y---P~~d~~~P~p~l~~l~~~~~~i~~WL~~d-~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~-------~~~~~  152 (1237)
                      +|.+|   -|.|++.|. ....++.|++.+...-..- ...-+||||.+|.||+ |+.||...+...+       .-...
T Consensus       166 ~V~h~~y~~Wpd~~~P~-~~~~~l~l~~~v~~~~~~~~~~~PivVHCs~G~gRt-G~fial~~~~~~l~~~~~~~~vdv~  243 (284)
T d1fpra_         166 EIWHYQYLSWPDHGVPS-EPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRT-GTIIVIDMLMENISTKGLDCDIDIQ  243 (284)
T ss_dssp             EEEECCBCCSCTTSCCS-CSHHHHHHHHHHHHHHTTSTTCCCEEEESSBSSHHH-HHHHHHHHHHHHHHHHCTTSCCCHH
T ss_pred             EEEEEEECCCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-HHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             99988617887568999-989999999999999860688998899958997103-2999999999999961999764899


Q ss_pred             HHHHHHHHHCHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             999999985503231257899999649999999
Q 000884          153 KTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQY  185 (1237)
Q Consensus       153 ~aL~~~~~~~~~~~~~~v~~l~~~PSQ~RYv~Y  185 (1237)
                      +++..+..+|+ +   .|    ....|-.|++.
T Consensus       244 ~~v~~lR~qR~-~---~V----~t~~QY~f~y~  268 (284)
T d1fpra_         244 KTIQMVRAQRS-G---MV----QTEAQYKFIYV  268 (284)
T ss_dssp             HHHHHHHTTST-T---SS----CSSHHHHHHHH
T ss_pred             HHHHHHHHHCC-C---CC----CCHHHHHHHHH
T ss_conf             99999986374-2---16----99999999999

>d1yfoa_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=0.00033  Score=45.42  Aligned_cols=87  Identities=15%  Similarity=0.165  Sum_probs=54.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC----CCHHHHHHHHHHHCHH
Q ss_conf             789899996519999999999999997199809999963699651468899999997079----9999999999985503
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQY----SGEYKTLDMIYRQAPR  164 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~i~~WL~~d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~~----~~~~~aL~~~~~~~~~  164 (1237)
                      -|.|++.|. .-..++.|++.+..+-. ...+-+||||.+|.||+ |+.||...+....-    -...+++..+.++|  
T Consensus       191 ~Wpd~~~P~-~~~~~l~l~~~v~~~~~-~~~~PivVHCs~G~gRt-G~f~al~~~~~~l~~~~~vdv~~~v~~lR~qR--  265 (288)
T d1yfoa_         191 SWPDFGVPF-TPIGMLKFLKKVKACNP-QYAGAIVVHCSAGVGRT-GTFVVIDAMLDMMHSERKVDVYGFVSRIRAQR--  265 (288)
T ss_dssp             CCCSSSCCS-CSHHHHHHHHHHHHHSC-TTSCCEEEECSSSSHHH-HHHHHHHHHHHHHHHSSEECHHHHHHHHTTTS--
T ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCC-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC--
T ss_conf             999789889-98999999999998513-56883799807998426-89999999999998479878999999998546--


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             2312578999996499999999
Q 000884          165 ELLQLLSPLNPVPSQLRYLQYV  186 (1237)
Q Consensus       165 ~~~~~v~~l~~~PSQ~RYv~Yf  186 (1237)
                        ...|    ....|-+|++..
T Consensus       266 --~~~V----~t~~QY~f~y~~  281 (288)
T d1yfoa_         266 --CQMV----QTDMQYVFIYQA  281 (288)
T ss_dssp             --TTSS----CSHHHHHHHHHH
T ss_pred             --CCCC----CCHHHHHHHHHH
T ss_conf             --6657----999999999999

>d1rpma_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens), mu [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Human (Homo sapiens), mu [TaxId: 9606]

Probab=97.27  E-value=0.0005  Score=44.08  Aligned_cols=87  Identities=13%  Similarity=0.216  Sum_probs=56.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC----CCCHHHHHHHHHHHCHH
Q ss_conf             78989999651999999999999999719980999996369965146889999999707----99999999999985503
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQ----YSGEYKTLDMIYRQAPR  164 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~i~~WL~~d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~----~~~~~~aL~~~~~~~~~  164 (1237)
                      -|.|++.|. ....++.|++.+..... ...+=+||||.+|.||+ |+.|+...+....    .-...+++..+.++|+ 
T Consensus       182 ~Wpd~~~P~-~~~~~l~~i~~v~~~~~-~~~~PivVHCs~G~gRs-G~f~al~~~~~~l~~~~~vdv~~~v~~lR~qR~-  257 (278)
T d1rpma_         182 GWPDHGVPY-HATGLLGFVRQVKSKSP-PSAGPLVVHCSAGAGRT-GCFIVIDIMLDMAEREGVVDIYNCVRELRSRRV-  257 (278)
T ss_dssp             CSCSSSCCS-CSHHHHHHHHHHHHHSC-TTSCCEEEESSSSSHHH-HHHHHHHHHHHHHHHHSEECHHHHHHHHHHHST-
T ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHHHC-CCCCCEEEEECCCCHHH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC-
T ss_conf             605678899-87899999999999737-88998899938995032-699999999999974798799999999986365-


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             2312578999996499999999
Q 000884          165 ELLQLLSPLNPVPSQLRYLQYV  186 (1237)
Q Consensus       165 ~~~~~v~~l~~~PSQ~RYv~Yf  186 (1237)
                      +   .|    ..+.|-+|++..
T Consensus       258 ~---~V----~t~~QY~f~y~~  272 (278)
T d1rpma_         258 N---MV----QTEEQYVFIHDA  272 (278)
T ss_dssp             T---SS----CSHHHHHHHHHH
T ss_pred             C---CC----CCHHHHHHHHHH
T ss_conf             3---15----999999999999

>d2f71a1 c.45.1.2 (A:2-298) Tyrosine phosphatase {Human (Homo sapiens), 1B [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Human (Homo sapiens), 1B [TaxId: 9606]

Probab=97.26  E-value=0.00047  Score=44.28  Aligned_cols=88  Identities=19%  Similarity=0.171  Sum_probs=53.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCHHHHHHHHHHH----HCCCC---CHHHHHHHHHH
Q ss_conf             78989999651999999999999999719-980999996369965146889999999----70799---99999999998
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSLG-QHNVLMMHCERGGWPVLAFMLAALLIY----RKQYS---GEYKTLDMIYR  160 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~i~~WL~~d-~~NVvviHCk~Gkgrt~g~~ia~~Lly----~~~~~---~~~~aL~~~~~  160 (1237)
                      -|.|++.| .....++.|++.+....... ..+=+||||.+|.||| |+.||...++    ...-.   ...+++..+.+
T Consensus       177 ~Wpd~~vP-~~~~~~l~l~~~v~~~~~~~~~~~PivVHCs~G~gRt-Gtf~ald~~~~~l~~~~~~~~vdV~~~v~~lR~  254 (297)
T d2f71a1         177 TWPDFGVP-ESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRS-GTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRK  254 (297)
T ss_dssp             CCCTTCCC-SCHHHHHHHHHHHHHTTTTCTTSCCEEEECSSSSHHH-HHHHHHHHHHHHHHHHTCGGGCCHHHHHHHHTT
T ss_pred             CCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCE-EHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             76557999-9879999999999986213888863999603556753-236899999999986169976489999999986


Q ss_pred             HCHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             55032312578999996499999999
Q 000884          161 QAPRELLQLLSPLNPVPSQLRYLQYV  186 (1237)
Q Consensus       161 ~~~~~~~~~v~~l~~~PSQ~RYv~Yf  186 (1237)
                      +|+    ..|    ....|-.|++..
T Consensus       255 qR~----~~V----qt~~QY~f~y~~  272 (297)
T d2f71a1         255 FRM----GLI----QTADQLRFSYLA  272 (297)
T ss_dssp             TST----TCS----CSHHHHHHHHHH
T ss_pred             HCC----CCC----CCHHHHHHHHHH
T ss_conf             056----213----999999999999

>d1lyva_ c.45.1.2 (A:) Protein-tyrosine phosphatase YopH, catalytic domain {Yersinia enterocolitica [TaxId: 630]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Protein-tyrosine phosphatase YopH, catalytic domain
species: Yersinia enterocolitica [TaxId: 630]

Probab=97.21  E-value=0.00039  Score=44.92  Aligned_cols=96  Identities=9%  Similarity=0.034  Sum_probs=54.1

Q ss_pred             EEEC-CCCCCCCCCC-CHHHHHHHHHHHHHHHHC------------CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC--
Q ss_conf             8748-7898999965-199999999999999971------------99809999963699651468899999997079--
Q 000884           85 IMDY-PRQYEGCPLL-TMEVIHHFLRSTESWLSL------------GQHNVLMMHCERGGWPVLAFMLAALLIYRKQY--  148 (1237)
Q Consensus        85 V~~y-P~~d~~~P~p-~l~~l~~~~~~i~~WL~~------------d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~~--  148 (1237)
                      ..+| -|.|++.|.. ....++.|.+.+..+...            ....-+||||.+|.||| |+.||++++-...-  
T Consensus       163 h~~y~~Wpd~~~p~~~~~~~ll~li~~v~~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRt-Gtfia~~~~~~~~~~~  241 (283)
T d1lyva_         163 VVHVGNWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHSRAGVGRT-AQLIGAMCMNDSRNSQ  241 (283)
T ss_dssp             EEEECCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGGCTTSSCCEEECSSSSSHH-HHHHHHHHHTCGGGTT
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHH-HHHHHHHHHHHHCCCC
T ss_conf             999777544689983206999999999999987554303544446678898799968997579-9999999999960599


Q ss_pred             CCHHHHHHHHHHHCHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9999999999985503231257899999649999999997
Q 000884          149 SGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSR  188 (1237)
Q Consensus       149 ~~~~~aL~~~~~~~~~~~~~~v~~l~~~PSQ~RYv~Yf~~  188 (1237)
                      -...+++..+.++|. +  ..|    ....|-.||+=...
T Consensus       242 vdv~~~v~~lR~qR~-~--~mV----qt~~QY~fly~~~~  274 (283)
T d1lyva_         242 LSVEDMVSQMRVQRN-G--IMV----QKDEQLDVLIKLAE  274 (283)
T ss_dssp             CCHHHHHHHHHHHTC-T--TSS----CSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCC-C--CCC----CCHHHHHHHHHHHH
T ss_conf             799999999983499-9--888----99999999999999

>d1lara2 c.45.1.2 (A:1628-1876) RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: RPTP Lar
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00097  Score=41.95  Aligned_cols=93  Identities=15%  Similarity=0.271  Sum_probs=58.4

Q ss_pred             EEEC-CCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHCC----CCCHHHHHHHH
Q ss_conf             8748-7898999965199999999999999971-9980999996369965146889999999707----99999999999
Q 000884           85 IMDY-PRQYEGCPLLTMEVIHHFLRSTESWLSL-GQHNVLMMHCERGGWPVLAFMLAALLIYRKQ----YSGEYKTLDMI  158 (1237)
Q Consensus        85 V~~y-P~~d~~~P~p~l~~l~~~~~~i~~WL~~-d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~----~~~~~~aL~~~  158 (1237)
                      ..+| -|.|++.|. ....++.|.+.+...... ....-+||||.+|.||+ |+.++...+....    .-...+++..+
T Consensus       144 h~~y~~Wpd~~~P~-~~~~~~~li~~v~~~~~~~~~~~pivVhc~~G~gRs-g~f~~~~~~~~~l~~~~~vdv~~~v~~l  221 (249)
T d1lara2         144 QFQFTDWPEQGVPK-TGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRT-GVFITLSIVLERMRYEGVVDMFQTVKTL  221 (249)
T ss_dssp             EEEECCSCSSSCCS-SCHHHHHHHHHHHHHHHHTTCCSCEEEESSSSSSHH-HHHHHHHHHHHHHHHHSEECHHHHHHHH
T ss_pred             EEEECCCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEE-HHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             99644777678899-989999999999986652588875799878997100-4899999999999727998999999999


Q ss_pred             HHHCHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf             98550323125789999964999999999
Q 000884          159 YRQAPRELLQLLSPLNPVPSQLRYLQYVS  187 (1237)
Q Consensus       159 ~~~~~~~~~~~v~~l~~~PSQ~RYv~Yf~  187 (1237)
                      .++|+    ..|    ..+-|-+|++..-
T Consensus       222 R~qR~----~~v----~~~~Qy~f~y~~l  242 (249)
T d1lara2         222 RTQRP----AMV----QTEDQYQLCYRAA  242 (249)
T ss_dssp             TTTST----TSS----CSHHHHHHHHHHH
T ss_pred             HHHCC----CCC----CCHHHHHHHHHHH
T ss_conf             86453----425----9999999999999

>d1p15a_ c.45.1.2 (A:) Protein-tyrosine phosphatase alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Protein-tyrosine phosphatase alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.00038  Score=44.99  Aligned_cols=88  Identities=13%  Similarity=0.171  Sum_probs=56.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC----CCCHHHHHHHHHHHCHH
Q ss_conf             78989999651999999999999999719980999996369965146889999999707----99999999999985503
Q 000884           89 PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQ----YSGEYKTLDMIYRQAPR  164 (1237)
Q Consensus        89 P~~d~~~P~p~l~~l~~~~~~i~~WL~~d~~NVvviHCk~Gkgrt~g~~ia~~Lly~~~----~~~~~~aL~~~~~~~~~  164 (1237)
                      -|.|++.|.-+ ..++.|++.+..+-......=+||||.+|.||+ |+.|+...+....    .-.-.+++..+.++|+ 
T Consensus       147 ~Wpd~~~P~~~-~~~l~~~~~v~~~~~~~~~~PivVHCs~G~gRs-g~f~a~~~~~~~l~~~~~vdv~~~v~~lR~qR~-  223 (245)
T d1p15a_         147 GWPEVGIPSDG-KGMINIIAAVQKQQQQSGNHPITVHCSAGAGRT-GTFCALSTVLERVKAEGILDVFQTVKSLRLQRP-  223 (245)
T ss_dssp             CSCSSSCCSSS-CSHHHHHHHHHHHTTTTTSCCEEEESSSSSHHH-HHHHHHHHHHHHHHHHSCCCTTHHHHHHHTTST-
T ss_pred             CCCCCCCCCCH-HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC-
T ss_conf             78755789898-999999999986422489987888748998330-189999999999970799689999999987363-


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             2312578999996499999999
Q 000884          165 ELLQLLSPLNPVPSQLRYLQYV  186 (1237)
Q Consensus       165 ~~~~~v~~l~~~PSQ~RYv~Yf  186 (1237)
                      +   .|    ..+.|-.|++..
T Consensus       224 ~---~v----qt~~QY~f~y~~  238 (245)
T d1p15a_         224 H---MV----QTLEQYEFCYKV  238 (245)
T ss_dssp             T---SS----CSTTTTHHHHHH
T ss_pred             C---CC----CCHHHHHHHHHH
T ss_conf             2---03----989999999999

>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Mycobacterial PtpB-like
domain: Phosphotyrosine protein phosphatase PtpB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.93  E-value=0.029  Score=30.88  Aligned_cols=28  Identities=21%  Similarity=0.261  Sum_probs=23.4

Q ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHCC
Q ss_conf             80999996369965146889999999707
Q 000884          119 HNVLMMHCERGGWPVLAFMLAALLIYRKQ  147 (1237)
Q Consensus       119 ~NVvviHCk~Gkgrt~g~~ia~~Lly~~~  147 (1237)
                      +.-+++||.+||-|| |++++-+|.-.|.
T Consensus       150 ~~pvL~HCtaGKDRT-G~~aallL~llGV  177 (272)
T d1ywfa1         150 GRPVLTHCFAGKDRT-GFVVALVLEAVGL  177 (272)
T ss_dssp             TCCEEEECSSSSSHH-HHHHHHHHHHTTC
T ss_pred             CCCEEEECCCCCCCH-HHHHHHHHHHCCC
T ss_conf             997798527888306-8999999998399

>d1ohea1 c.45.1.1 (A:42-198) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Proline directed phosphatase CDC14b2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.46  E-value=0.46  Score=21.94  Aligned_cols=107  Identities=11%  Similarity=0.129  Sum_probs=66.0

Q ss_pred             CCCCEEE-EECCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCCCCEEEECCC
Q ss_conf             9997023-507579960787899951455403787999997230999958999837774013321012335851874878
Q 000884           12 PPDGLLE-ISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPR   90 (1237)
Q Consensus        12 ~~lDL~y-IT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~   90 (1237)
                      +..|+.. |.+|++-..  +-..  +                 +... +...|+.-++--          |      .+|
T Consensus         3 ~~~~~~~~I~dRLYf~~--~~~~--p-----------------k~t~-~~~yF~iD~el~----------Y------~~F   44 (157)
T d1ohea1           3 PQDDVYLDITDRLCFAI--LYSR--P-----------------KSAS-NVHYFSIDNELE----------Y------ENF   44 (157)
T ss_dssp             GGGCEEEESSSSEEEEE--CSSC--C-----------------CCBT-TEEEEECTTTSC----------C------CCS
T ss_pred             CCCCEEEECCCCEEEEE--CCCC--C-----------------CCCC-CEEEEEECCEEE----------E------CCC
T ss_conf             66660686189689997--4679--9-----------------9998-758999587168----------8------343


Q ss_pred             -CCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCC--C-HHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             -989999651999999999999999719-980999996369965--1-46889999999707999999999999
Q 000884           91 -QYEGCPLLTMEVIHHFLRSTESWLSLG-QHNVLMMHCERGGWP--V-LAFMLAALLIYRKQYSGEYKTLDMIY  159 (1237)
Q Consensus        91 -~d~~~P~p~l~~l~~~~~~i~~WL~~d-~~NVvviHCk~Gkgr--t-~g~~ia~~Lly~~~~~~~~~aL~~~~  159 (1237)
                       .|.|+.  .|.+|++||..++.-|+.. ..|-.+|||-....+  + .+++||||++-.-.+ ++++|+..+.
T Consensus        45 ~~DFGPL--NL~~lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kraNAa~Lig~Y~Vi~l~~-sp~~a~~~l~  115 (157)
T d1ohea1          45 YADFGPL--NLAMVYRYCCKINKKLKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGR-TPEEAYRILI  115 (157)
T ss_dssp             SSCCCCC--CHHHHHHHHHHHHHHHHCGGGTTSEEEEEECSCHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHT
T ss_pred             CCCCCCC--HHHHHHHHHHHHHHHHCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_conf             3024871--499999999999999739454297699987998788889999999999998189-9999999987