Citrus Sinensis ID: 000891
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1236 | 2.2.26 [Sep-21-2011] | |||||||
| O97159 | 1982 | Chromodomain-helicase-DNA | yes | no | 0.034 | 0.021 | 0.534 | 5e-09 | |
| Q6PDQ2 | 1915 | Chromodomain-helicase-DNA | yes | no | 0.074 | 0.048 | 0.307 | 9e-09 | |
| Q14839 | 1912 | Chromodomain-helicase-DNA | yes | no | 0.074 | 0.048 | 0.307 | 2e-08 | |
| Q22516 | 1787 | Chromodomain-helicase-DNA | yes | no | 0.052 | 0.036 | 0.402 | 2e-08 | |
| Q8TDI0 | 1954 | Chromodomain-helicase-DNA | no | no | 0.033 | 0.021 | 0.488 | 5e-08 | |
| Q9ULU4 | 1186 | Protein kinase C-binding | no | no | 0.075 | 0.078 | 0.303 | 7e-08 | |
| G5EBZ4 | 1829 | Protein let-418 OS=Caenor | no | no | 0.036 | 0.024 | 0.521 | 2e-07 | |
| O16102 | 892 | Chromodomain-helicase-DNA | no | no | 0.033 | 0.047 | 0.476 | 2e-07 | |
| O88491 | 2588 | Histone-lysine N-methyltr | no | no | 0.034 | 0.016 | 0.456 | 2e-07 | |
| Q96L73 | 2696 | Histone-lysine N-methyltr | no | no | 0.034 | 0.015 | 0.456 | 3e-07 |
| >sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2 | Back alignment and function desciption |
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Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 377 CRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECA 419
CR+C G LLCCD CPSAYHT C+ +P+G W CP C+
Sbjct: 440 CRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRCS 482
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Vital role in development. Protein binds to a portion of Hunchback (HB) protein that is critical for repression of bithorax complex (BXC) genes. May also function in polycomb group (PcG) repression of Hox genes. Drosophila melanogaster (taxid: 7227) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2 |
| >sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9ULU4|PKCB1_HUMAN Protein kinase C-binding protein 1 OS=Homo sapiens GN=ZMYND8 PE=1 SV=2 | Back alignment and function description |
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| >sp|G5EBZ4|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1 | Back alignment and function description |
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| >sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3 | Back alignment and function description |
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| >sp|O88491|NSD1_MOUSE Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Mus musculus GN=Nsd1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q96L73|NSD1_HUMAN Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Homo sapiens GN=NSD1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1236 | ||||||
| 449456180 | 1719 | PREDICTED: uncharacterized protein LOC10 | 0.922 | 0.663 | 0.471 | 0.0 | |
| 356564737 | 1608 | PREDICTED: uncharacterized protein LOC10 | 0.875 | 0.672 | 0.475 | 0.0 | |
| 356541977 | 1613 | PREDICTED: uncharacterized protein LOC10 | 0.872 | 0.668 | 0.481 | 0.0 | |
| 62701668 | 1884 | expressed protein [Oryza sativa Japonica | 0.874 | 0.573 | 0.368 | 0.0 | |
| 222615525 | 1888 | hypothetical protein OsJ_32971 [Oryza sa | 0.874 | 0.572 | 0.368 | 0.0 | |
| 218185249 | 1888 | hypothetical protein OsI_35107 [Oryza sa | 0.874 | 0.572 | 0.368 | 0.0 | |
| 359479395 | 1582 | PREDICTED: uncharacterized protein LOC10 | 0.449 | 0.350 | 0.616 | 0.0 | |
| 242069991 | 1976 | hypothetical protein SORBIDRAFT_05g00293 | 0.868 | 0.543 | 0.352 | 0.0 | |
| 297734860 | 1382 | unnamed protein product [Vitis vinifera] | 0.447 | 0.400 | 0.611 | 0.0 | |
| 357153170 | 2116 | PREDICTED: uncharacterized protein LOC10 | 0.878 | 0.513 | 0.367 | 0.0 |
| >gi|449456180|ref|XP_004145828.1| PREDICTED: uncharacterized protein LOC101215849 [Cucumis sativus] gi|449510841|ref|XP_004163779.1| PREDICTED: uncharacterized LOC101215849 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 1046 bits (2704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/1255 (47%), Positives = 792/1255 (63%), Gaps = 115/1255 (9%)
Query: 20 DEDVTDGAGGKKRVV-AVEAKPIALVGRYVLKEFE-SGIFLGKIVYYESGLYRVDYEDGD 77
+ D+ DG K + + + +P+AL+GRY+LKEF SG +LGK+VYYE GLYRV YEDGD
Sbjct: 18 NNDLQDGNDDAKSALESCKRRPVALLGRYLLKEFNGSGKYLGKVVYYEEGLYRVVYEDGD 77
Query: 78 CEDLDSSELRQFLLNENDFDADLTRRRKKLDDWLVKRSLKNEKSNLEKKDGDAKSEVDRI 137
EDL+S E+R L+ ++ D L++R+K+LDD L R + + K D ++D +
Sbjct: 78 SEDLESGEIRGLLIGDSYLDDGLSKRKKRLDD-LADRIKAKCANGMGKNSTDTSDKLDPV 136
Query: 138 EASTLSEVSCGLTVEDVGEQVEGDMDSSSDSCEHVRETDAGLEAETPLLPPPQLPPSSGT 197
AS S+VS +++ E+VE D++SSSDS E VR+ D+ E L+PPP+ PPSSGT
Sbjct: 137 -ASVPSKVSSEHIMQNDAEEVEADVESSSDSLESVRDRDSEFGDENLLIPPPEFPPSSGT 195
Query: 198 I----------------------------------------------------ALMRVLR 205
I ALMR LR
Sbjct: 196 IGIQEQHVSHLLSVYGFLRSFSVRLFLFPFSLDDFVGSLNCGVANTLLDSIHVALMRALR 255
Query: 206 RHLETLSSDGSELASNCLRCIDWSLLDTLTWPVYVVQYLTSMGYIKGTQWTGFYDEVSVR 265
RHLE LSSDG E+AS CLR +W+LLD+LTWPVY+VQYLT MG+ KG +W GFY
Sbjct: 256 RHLEVLSSDGLEIASKCLRHFNWNLLDSLTWPVYLVQYLTVMGHAKGLEWNGFYKHALGN 315
Query: 266 EYYSLSAGRKLMILQILCDDVLDSEELRAEIDAREESEVGLDPDA-ASYGSEIARRRVHP 324
EYYS+ AGRKL++LQILCD+VL+S ELRAEIDARE SEVGLD DA A+ SE RRVHP
Sbjct: 316 EYYSIPAGRKLLVLQILCDEVLESGELRAEIDAREISEVGLDYDAGATCLSENGPRRVHP 375
Query: 325 RFSKTPDCKNREAVEFNAENDRMKTSCKAKPLGFKGT---EMDAPGVDVDGNGDECRICG 381
R+ KT CK+ EA+E N+ K+ G KG ++D VD + N DECR+CG
Sbjct: 376 RYPKTSACKDGEAMEIIVLNNGTKSYSDQNFSGLKGGSNGDLDVTAVDANRNSDECRLCG 435
Query: 382 MDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAINKVGPIVTIGTSLRGAELFGI 441
MDG+LLCCDGCPSAYH RCIG+ K+ +P+G WYCPEC+INK P +T G++LRGAE+FGI
Sbjct: 436 MDGSLLCCDGCPSAYHLRCIGMVKVLIPQGPWYCPECSINKSEPTITKGSALRGAEVFGI 495
Query: 442 DLYERVFLGTCNHLLVLNASSNTEQYIRYYNPIDIPKVLQALLSSVQHVSLYLGICKAIL 501
D YE +FLG+CNHL+VL +S N+E ++YYN DI KVL L SS Q +++Y GICKAI+
Sbjct: 496 DPYEHIFLGSCNHLVVLKSSINSEPCLKYYNRNDILKVLHLLCSSSQSIAIYYGICKAIM 555
Query: 502 HYWDIPESVVPF---MGMETNTINAKADEKFCSQSHHPPIKESQRITDMVEAGNASSNNG 558
YWDIPE+++ GM+ + + D +QS+ P E ++ DM+E GN +
Sbjct: 556 QYWDIPENLLVLPEASGMDVVPADLREDTNLYAQSN--PSGEERKELDMIENGNDPATCK 613
Query: 559 SNVDNVAVSSLHTFMNTMSQTGVPFVQSNDITVTEKLQDCLVLNGKLPGHVKMESAMSTG 618
S V+N L T SQ P D G +P +S +S G
Sbjct: 614 SEVNN----KLGTLHVETSQD--PLSHPTD-------------RGTMPPECVGKSVLSNG 654
Query: 619 --------SVSQQADPSDVTYQSLVDRSSAIDFMTCTSQISNDGNSGH---ASSCLSPNI 667
++S+ + +D+ ++VD I T S S + + H A++ +S N
Sbjct: 655 FNVDSLTSNISRPNNLTDIACPNMVD----ISSTTDLSSSSGNKSFSHIRNANASISLN- 709
Query: 668 SFLSKERNHGGLLGVG-----TNYANKCAFMGSVFKPHSYINQYMHGEFAAAAAAKLAVL 722
LS++ +GGLL G + CA+MGS +KP +++N Y HGEFAA+AA KL VL
Sbjct: 710 --LSRQSQNGGLLSHGKVKGDIKSTSSCAYMGSQYKPQAFVNHYAHGEFAASAAHKLDVL 767
Query: 723 SSEESQASEMHKSGNTRKAMSGSISLQAKAFSSTASRFFWPCSERKLWEVPRERCSWCYS 782
+SEE++ + ++ S + + LQAKAFS +ASRFFWP ++KL EVPRERC WC S
Sbjct: 768 TSEETRVTGINASDKRNSSTASYALLQAKAFSQSASRFFWPTFDKKLMEVPRERCGWCLS 827
Query: 783 CKSPPSNRRGCMLNSAMTVATKSAMKILNGLLAPKTGEGNLPTIVTYIMYMEESLCGLIS 842
C++ +++GC+LN A AT+SAMKIL+ L K GEGNLP I YI+YMEESL GL+
Sbjct: 828 CRATVLSKKGCLLNHAALTATRSAMKILSSLRVGKNGEGNLPCIAVYILYMEESLRGLVG 887
Query: 843 GPFRSVSYRKKWRKQVAEACTLNSIKALLLELEENICHIALSGDWVKLMDDWLGDSSVIQ 902
GPF + SYRKKWR Q+ + + IK LLLELEENI IALSG+W KL+D+W ++S+IQ
Sbjct: 888 GPFLNASYRKKWRHQLESTLSCSLIKILLLELEENIRCIALSGNWFKLVDEWFLETSMIQ 947
Query: 903 SASCNFVTTQKRGLSGKRGRKHSVISEVTADDCNDQSFSWWQGGKSTKLISKKAILPHTI 962
+A TT + G+RGRK SV SEV + D ++ +F W++GG S KL+ ++A LP I
Sbjct: 948 NAPSAVGTTVHKRGPGRRGRKQSV-SEVPSHDRSNANFVWFRGGIS-KLVFQRAALPQFI 1005
Query: 963 IRNAARRGGLRKISGVNYT--AEMPKRSRQLVWRAAVERSKTVSQLALQVRYIDLHVRWS 1020
+ AAR+GG RKI+G++YT +E+P+RSRQLVWRAAVE SK SQLALQ+R +D H+RW+
Sbjct: 1006 VAKAARQGGSRKIAGIHYTDGSEIPRRSRQLVWRAAVEASKNASQLALQLRNLDFHLRWN 1065
Query: 1021 ELVRPEQNLQDGKGPETEAFAFRNAIICDKKIVENKIRYGVAFGIHRHLPSRVMKNIIDI 1080
+LVRPEQ QD KG ETEA FRNA I DKK+VENKI YGVAFG +HLPSRVMKN+I+I
Sbjct: 1066 DLVRPEQTFQDMKGQETEASVFRNASISDKKVVENKITYGVAFGSQKHLPSRVMKNVIEI 1125
Query: 1081 ELSQDGKEKYWFPETCLPLFLIKEYEERVDMVIAPSSKKPSNELSEFQKKQLKASRKDLF 1140
E QDGK YWF E C+PL+L+KEYEE V K N +++ +K+ ++++F
Sbjct: 1126 EQKQDGKVAYWFSENCIPLYLVKEYEEGSLQVNVSPPKVYQNIPYHSRRRWVKSYQREIF 1185
Query: 1141 SYLVCRRDKIEKCACASCQIDVLLGNAVKCGTCQGM----LITNLSVFCFRDVLG 1191
YL CRRD + +C+SCQ++VL+ NAVKC C+G I ++ DV+G
Sbjct: 1186 FYLTCRRDNMGLLSCSSCQMEVLIRNAVKCSLCRGYCHVSCIVRSTISATEDVVG 1240
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564737|ref|XP_003550605.1| PREDICTED: uncharacterized protein LOC100794210 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356541977|ref|XP_003539448.1| PREDICTED: uncharacterized protein LOC100808614 [Glycine max] | Back alignment and taxonomy information |
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| >gi|62701668|gb|AAX92741.1| expressed protein [Oryza sativa Japonica Group] gi|62701669|gb|AAX92742.1| expressed protein [Oryza sativa Japonica Group] gi|77548688|gb|ABA91485.1| PHD-finger family protein, expressed [Oryza sativa Japonica Group] gi|77548689|gb|ABA91486.1| PHD-finger family protein, expressed [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|222615525|gb|EEE51657.1| hypothetical protein OsJ_32971 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|218185249|gb|EEC67676.1| hypothetical protein OsI_35107 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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| >gi|359479395|ref|XP_002271257.2| PREDICTED: uncharacterized protein LOC100243147 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|242069991|ref|XP_002450272.1| hypothetical protein SORBIDRAFT_05g002930 [Sorghum bicolor] gi|241936115|gb|EES09260.1| hypothetical protein SORBIDRAFT_05g002930 [Sorghum bicolor] | Back alignment and taxonomy information |
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| >gi|297734860|emb|CBI17094.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357153170|ref|XP_003576362.1| PREDICTED: uncharacterized protein LOC100837721 [Brachypodium distachyon] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1236 | ||||||
| TAIR|locus:2162509 | 1566 | AT5G22760 "AT5G22760" [Arabido | 0.385 | 0.304 | 0.571 | 1.3e-267 | |
| UNIPROTKB|F5GXF5 | 2457 | BPTF "Nucleosome-remodeling fa | 0.131 | 0.065 | 0.258 | 2.5e-09 | |
| TAIR|locus:2201021 | 1138 | AT1G05380 "AT1G05380" [Arabido | 0.144 | 0.156 | 0.290 | 4.1e-09 | |
| UNIPROTKB|E7ETD6 | 2764 | BPTF "Nucleosome-remodeling fa | 0.131 | 0.058 | 0.258 | 4.6e-09 | |
| UNIPROTKB|Q12830 | 3046 | BPTF "Nucleosome-remodeling fa | 0.131 | 0.053 | 0.258 | 7.9e-09 | |
| UNIPROTKB|Q5TH12 | 175 | ZMYND8 "Protein kinase C-bindi | 0.077 | 0.548 | 0.309 | 1.5e-08 | |
| UNIPROTKB|E1C5C7 | 2789 | BPTF "Uncharacterized protein" | 0.087 | 0.038 | 0.271 | 1.7e-08 | |
| UNIPROTKB|E1C5C8 | 2802 | BPTF "Uncharacterized protein" | 0.087 | 0.038 | 0.271 | 1.8e-08 | |
| UNIPROTKB|F1LX76 | 2894 | F1LX76 "Uncharacterized protei | 0.131 | 0.055 | 0.266 | 2.6e-08 | |
| UNIPROTKB|F1M1V5 | 2952 | F1M1V5 "Uncharacterized protei | 0.131 | 0.054 | 0.266 | 2.9e-08 |
| TAIR|locus:2162509 AT5G22760 "AT5G22760" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1429 (508.1 bits), Expect = 1.3e-267, Sum P(3) = 1.3e-267
Identities = 277/485 (57%), Positives = 352/485 (72%)
Query: 694 GSVFKPHSYINQYMHGEFXXXXXXKLAVLSSEESQASEMHKSGNTRKAMSGSISLQAKAF 753
G FKPHSYIN Y +GE LA+L SEE+ ++HK N +KA S +I LQ KAF
Sbjct: 626 GLSFKPHSYINHYTNGELAASAAATLAILMSEETHEPDLHKFSNAKKAASSNILLQMKAF 685
Query: 754 SSTASRFFWPCSERKLWEVPRERCSWCYSCKSPPSNRRGCMLNSAMTVATKSAMKILNGL 813
S AS FFWP ++K E+ RERC WC+SCK ++RRGCMLN+A+T ATKSAMKI +GL
Sbjct: 686 SIVASSFFWPSPDKK--EITRERCGWCHSCKLTSASRRGCMLNAAVTGATKSAMKIYSGL 743
Query: 814 LAPKTGEGNLPTIVTYIMYMEESLCGLISGPFRSVSYRKKWRKQVAEACTLNSIKALLLE 873
K GEG L I Y +Y+EESL GLI+GPF S S R +WRK++ EA T ++KALLLE
Sbjct: 744 FPLKNGEGVLSRIAAYALYLEESLRGLIAGPFLSESLRYQWRKKLEEASTCKAMKALLLE 803
Query: 874 LEENICHIALSGDWVKLMDDWLGDSSVIQSASCNFVTTQKRGLSGKRGRKHSVISEVTAD 933
LEENIC IALS DW+KLMDDWL + S+ QSA TQKR G+R +++ +E TA
Sbjct: 804 LEENICSIALSSDWLKLMDDWLIELSIFQSAPVTVGATQKRR-PGRRKQRNQ--AENTAQ 860
Query: 934 DCNDQSFSWWQGGKSTKLISKKAILPHTIIRNAARRGGLRKISGVNYT--AEMPKRSRQL 991
+D SF+WW+GGK +K+I KA+L I+ AA +GG +K NY + +PKRSR+
Sbjct: 861 GSDDDSFTWWRGGKLSKIILLKAVLSKPKIKKAAWQGGTKKFPEFNYGDGSYIPKRSRRS 920
Query: 992 VWRAAVERSKTVSQLALQVRYIDLHVRWSELVRPEQNLQDGKGPETEAFAFRNAIICDKK 1051
+W+AAVE SK +SQLALQVRY+D+++RWSELVRPEQN+QD KGPETEA FRNA IC KK
Sbjct: 921 IWKAAVESSKNISQLALQVRYLDMNIRWSELVRPEQNVQDVKGPETEATIFRNASICVKK 980
Query: 1052 IVENKIRYGVAFGIHRHLPSRVMKNIIDIELSQDGKEKYWFPETCLPLFLIKEYEERVDM 1111
I++NK+RYGV FG +HLPSRVMKN+I++E S+D EKYWF E +PL+LIKEYEE +
Sbjct: 981 IIDNKVRYGVVFGNQKHLPSRVMKNVIEVEKSEDRNEKYWFHEARVPLYLIKEYEESLHR 1040
Query: 1112 VI-APSSKKPSNELSEFQKKQLKASRKDLFSYLVCRRDKIEKCACASCQIDVLLGNAVKC 1170
V+ P KKPS ++S+ QK+QLKASR ++FSYL RRD EKC+CASC +DV L +++ C
Sbjct: 1041 VVHIPFIKKPSRKISKLQKRQLKASRANIFSYLASRRDNTEKCSCASCHLDVFLRDSITC 1100
Query: 1171 GTCQG 1175
TCQG
Sbjct: 1101 STCQG 1105
|
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| UNIPROTKB|F5GXF5 BPTF "Nucleosome-remodeling factor subunit BPTF" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2201021 AT1G05380 "AT1G05380" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E7ETD6 BPTF "Nucleosome-remodeling factor subunit BPTF" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q12830 BPTF "Nucleosome-remodeling factor subunit BPTF" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5TH12 ZMYND8 "Protein kinase C-binding protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C5C7 BPTF "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C5C8 BPTF "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1LX76 F1LX76 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1M1V5 F1M1V5 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | 4349776 | PHD-finger family protein, expressed (1888 aa) | ||||||
(Oryza sativa Japonica) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1236 | |||
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 2e-10 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 4e-10 | |
| cd11726 | 127 | cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-tha | 5e-06 | |
| cd11672 | 120 | cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD | 3e-04 | |
| COG5141 | 669 | COG5141, COG5141, PHD zinc finger-containing prote | 0.004 |
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-10
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 377 CRICGM---DGTLLCCDGCPSAYHTRCIG--VSKMYVPEGSWYCPEC 418
C +CG DG LL CDGC +H C+G + +PEG WYCPEC
Sbjct: 2 CAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCPEC 48
|
PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51 |
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|213034 cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-thalassemia/mental retardation, X-linked) | Back alignment and domain information |
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| >gnl|CDD|213032 cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD-like zinc finger domain | Back alignment and domain information |
|---|
| >gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1236 | |||
| KOG1473 | 1414 | consensus Nucleosome remodeling factor, subunit NU | 100.0 | |
| KOG1473 | 1414 | consensus Nucleosome remodeling factor, subunit NU | 98.93 | |
| COG5141 | 669 | PHD zinc finger-containing protein [General functi | 98.52 | |
| KOG1244 | 336 | consensus Predicted transcription factor Requiem/N | 98.47 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 98.45 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 98.45 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 98.06 | |
| cd04718 | 148 | BAH_plant_2 BAH, or Bromo Adjacent Homology domain | 98.04 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 98.03 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 97.95 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 97.88 | |
| COG5034 | 271 | TNG2 Chromatin remodeling protein, contains PhD zi | 97.58 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 97.56 | |
| KOG1973 | 274 | consensus Chromatin remodeling protein, contains P | 97.54 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 97.44 | |
| KOG0956 | 900 | consensus PHD finger protein AF10 [General functio | 97.41 | |
| KOG4443 | 694 | consensus Putative transcription factor HALR/MLL3, | 97.19 | |
| KOG0954 | 893 | consensus PHD finger protein [General function pre | 96.97 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 96.82 | |
| PF09465 | 55 | LBR_tudor: Lamin-B receptor of TUDOR domain; Inter | 96.59 | |
| PF13831 | 36 | PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. | 96.05 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 95.85 | |
| KOG4443 | 694 | consensus Putative transcription factor HALR/MLL3, | 95.59 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 95.46 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 95.44 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 95.06 | |
| PF15612 | 50 | WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B | 94.79 | |
| KOG1244 | 336 | consensus Predicted transcription factor Requiem/N | 94.03 | |
| smart00333 | 57 | TUDOR Tudor domain. Domain of unknown function pre | 92.97 | |
| KOG1246 | 904 | consensus DNA-binding protein jumonji/RBP2/SMCY, c | 91.36 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 90.51 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 86.37 | |
| smart00743 | 61 | Agenet Tudor-like domain present in plant sequence | 85.42 | |
| cd04508 | 48 | TUDOR Tudor domains are found in many eukaryotic o | 81.7 | |
| PF09038 | 122 | 53-BP1_Tudor: Tumour suppressor p53-binding protei | 81.56 | |
| PLN00163 | 59 | histone H4; Provisional | 80.11 |
| >KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-124 Score=1111.01 Aligned_cols=968 Identities=35% Similarity=0.484 Sum_probs=789.5
Q ss_pred CCCCCCCCCCCCcCCCCCCccccCCCCCCccceeecc-cccceeecceehhccCC-ceEEEEEEEEecceEEEEecCCCc
Q 000891 1 MEAKVKRPRGRPRKRKRPEDEDVTDGAGGKKRVVAVE-AKPIALVGRYVLKEFES-GIFLGKIVYYESGLYRVDYEDGDC 78 (1236)
Q Consensus 1 me~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~LvGr~V~k~f~~-~~~~GkV~~yd~g~Y~V~yEDGd~ 78 (1236)
||.+++|||||||||.|+|+.+. +.+++|+|+..++ +.|+.|.|+|+.|.+.+ ++|+||+++||+|+|||.|||||+
T Consensus 1 m~g~~arpRGRp~k~p~~e~~nr-~~~~~kkp~~~~e~~~p~s~l~~r~~~d~~d~~~~~~k~~s~d~~~~rv~~e~~~~ 79 (1414)
T KOG1473|consen 1 MEGKVARPRGRPRKRPRSEDGNR-SINRGKKPVEEVESAVPRSLLGKRYLKDGDDKKVFLGKIVSYDTGLYRVKYEDGDV 79 (1414)
T ss_pred CCCCCCCCCCCCCCCCCcccccc-hhhhccCccccccccCccccccccccCCccchhhhhcccccccCcceeEEeecccc
Confidence 99999999999999999999999 9999999943332 34569999999999999 999999999999999999999999
Q ss_pred cccChhHHHhhhccCCCcchHHHHHHhhhhhhhcccccccccccccccCCCCcccccccccccccccccccccccCCccc
Q 000891 79 EDLDSSELRQFLLNENDFDADLTRRRKKLDDWLVKRSLKNEKSNLEKKDGDAKSEVDRIEASTLSEVSCGLTVEDVGEQV 158 (1236)
Q Consensus 79 Edl~~~el~~~l~~~~~~~~~~~~Rr~kld~~~~~~s~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 158 (1236)
|+++-..+++.++.++.++..+..||.+||+.....+....-...+.+..|.++... ..+.+-..+
T Consensus 80 ~~~~~s~v~~~~~s~s~~~eet~~rr~dl~d~~edk~d~~dd~e~~e~~~ed~~~~N--------------~~~~v~~se 145 (1414)
T KOG1473|consen 80 ESLEASTVRPLIISDSGKDEETRPRRKDLDDQEEDKDDKKDDSEEEEKDDEDPFMCN--------------EDSSVQESE 145 (1414)
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccccccccccccchhhcC--------------chhhhhhhh
Confidence 999999999999999999999999999999998887755111111222222222211 011122334
Q ss_pred cCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCch-----------hHHHHHH--HHhhhcCCCCch---hhh--
Q 000891 159 EGDMDSSSDSCEHVRETDAGLEAETPLLPPPQLPPSSGTI-----------ALMRVLR--RHLETLSSDGSE---LAS-- 220 (1236)
Q Consensus 159 ~~d~~sss~s~~~~~~~~~~~~~~~p~~ppleLP~SS~di-----------Sl~rvLR--rhle~LSs~g~e---~As-- 220 (1236)
+++..++........+.++..+.+.|.+||||||+||||| |||++|| +|..||+||+|| +|+
T Consensus 146 ~~~n~t~~~~~~~~d~~~p~~~~e~~~vPpleLP~SSedi~IPne~Vm~alsIYevLRsF~~~LrisPF~feDFcaAL~~ 225 (1414)
T KOG1473|consen 146 SGLNYTDIGRPPRLDEPNPDLEEEPPLVPPLELPESSEDIGIPNEHVMDALSIYEVLRSFSRQLRISPFRFEDFCAALIS 225 (1414)
T ss_pred cccccCCCCCCCCCCCCCCChhhccccCCCccCCCcccccCCcHHHHHHHHHHHHHHHhhcceEEeCCccHHHHHHHHHh
Confidence 4555666666777777777788999999999999999999 9999999 899999999998 565
Q ss_pred ----------------------------------hhhhccccccccccchHHHHHHHhhhcccccCCCcccccccccccc
Q 000891 221 ----------------------------------NCLRCIDWSLLDTLTWPVYVVQYLTSMGYIKGTQWTGFYDEVSVRE 266 (1236)
Q Consensus 221 ----------------------------------~CLRni~w~lLD~lTWP~~L~eYl~s~G~~~~~e~k~f~~~ll~~E 266 (1236)
+|++||+|+|||+||||+|||+|+++||+..++-|..|...+..+|
T Consensus 226 ~~~ssLlaeVHvaLLrA~lr~eD~~~Thfs~~d~KdsvnI~l~liD~lTWPevLrqY~ea~~~ad~~v~~~~n~fv~~~e 305 (1414)
T KOG1473|consen 226 HEQSSLLAEVHVALLRALLREEDRLSTHFSPLDSKDSVNIDLYLIDTLTWPEVLRQYFEADKHADGPVWDIFNPFVVEDE 305 (1414)
T ss_pred cCchhHHHHHHHHHHHHHhhhhhhcccccCccccccceeeeeehhccccHHHHHHHHHHhccccCcchhhhhcccccccc
Confidence 3455999999999999999999999999999999988887777899
Q ss_pred ccccchhhHHHHHHHHHhhhcchHHHHHHHhhccccccC----CCcccc-ccccccccccc------CCCccCCCcccch
Q 000891 267 YYSLSAGRKLMILQILCDDVLDSEELRAEIDAREESEVG----LDPDAA-SYGSEIARRRV------HPRFSKTPDCKNR 335 (1236)
Q Consensus 267 Yy~~pV~~KL~ILq~LcD~~l~s~efRsE~dmrEese~~----Ld~~n~-~l~~e~G~rr~------~pR~sktSa~k~k 335 (1236)
||+.|++.||+|||+|||+|++++.+|.||+.+++.+.+ ++.+.. .+.+|+++|++ ||++.++++....
T Consensus 306 Y~~~pv~~klkILQ~L~Dq~l~~~s~R~e~~se~~~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~ 385 (1414)
T KOG1473|consen 306 YPYRPVSNKLKILQFLCDQFLTVNSLRDEIDSEGEIEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWEC 385 (1414)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccceeecccccccCcccceeecccCCceEEeeecCCccccCCCccchh
Confidence 999999999999999999999999999999998887766 555444 58899999999 9999999888766
Q ss_pred hhhhhhhccccc----CCCcCCCCCCCCCCCCCC-CCCcccccccccccccccCcccccCC-CCccccc-cccc--cccC
Q 000891 336 EAVEFNAENDRM----KTSCKAKPLGFKGTEMDA-PGVDVDGNGDECRICGMDGTLLCCDG-CPSAYHT-RCIG--VSKM 406 (1236)
Q Consensus 336 ea~E~~ees~~~----sps~~s~~sr~~~~e~~~-~~~~~d~ndD~C~VCgdgGeLLcCD~-CprafHl-~CL~--PpL~ 406 (1236)
+...+.. .++. -+..+..++.+..+-+.+ ....-.-+.+.|.+|+..+.+|||++ |+..||+ .|++ -.-+
T Consensus 386 evc~~hk-vngvvd~vl~~~K~~~~iR~~~iG~dr~gr~ywfi~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~ 464 (1414)
T KOG1473|consen 386 EVCNIHK-VNGVVDCVLPPSKNVDSIRHTPIGRDRYGRKYWFISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEM 464 (1414)
T ss_pred hhhhhhc-cCcccccccChhhcccceeccCCCcCccccchhceeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHH
Confidence 6665422 1111 011111112122222221 12223456678999999999999998 9999999 9999 4557
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccchhhhhhhh-cccceeeccCCCchhcccccccCchhHHHHhhhc
Q 000891 407 YVPEGSWYCPECAINKVGPIVTIGTSLRGAELFGIDLYERVFLGT-CNHLLVLNASSNTEQYIRYYNPIDIPKVLQALLS 485 (1236)
Q Consensus 407 ~iPeGdW~Cp~C~~~k~gpe~E~g~s~rg~e~LGcD~cgQ~Yh~k-C~rlLve~~s~D~e~c~rYYs~vDl~evLevL~~ 485 (1236)
.+|+|-|+|+.|...+.+++.+.+...+++--||.|+++|.|.+. |.-+|+.......+.-..|+...++..++.++..
T Consensus 465 ~L~d~i~~~~ee~~rqM~lT~~ltne~R~~~~f~~~~h~r~~l~~~c~~~lv~~iq~~~da~l~e~~l~~i~k~v~~~~S 544 (1414)
T KOG1473|consen 465 YLCDGIWERREEIIRQMGLTEELTNELRGAVDFGEDPHGRLFLGRDCAVLLVLCIQVVEDAILKEENLGDIDKVVLVLIS 544 (1414)
T ss_pred hhccchhhhHHHHHHhccchhhhhhhhhcccccccCCCcceeeecchhhHHhhhhhhhhhhhhhHhhhcchHhhhhhhhh
Confidence 899999999999999999988888888888889999999999885 4433332222222344778888888899999999
Q ss_pred cccchhhhhhHHHHHHHhhcCCCCCCCC-CCccccccccccccccccCCCCCCCccccccccccccCCCCCCCCCCCCcc
Q 000891 486 SVQHVSLYLGICKAILHYWDIPESVVPF-MGMETNTINAKADEKFCSQSHHPPIKESQRITDMVEAGNASSNNGSNVDNV 564 (1236)
Q Consensus 486 SDih~~~Y~eIc~~I~e~Wdi~~nl~~~-~~~e~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (1236)
+..|...|.++|.+|.++|+.+....-+ -......+.++. ..++|-...+...+-.-
T Consensus 545 ~s~~~eE~~e~ck~is~~~d~p~~n~~~~~e~~~dqtf~~y----------------------~ys~n~vse~~~~d~e~ 602 (1414)
T KOG1473|consen 545 ASAHQEEYVEICKAISQYWDLPEGNLWRLREEGNDQTFMKY----------------------YYSGNEVSEIFLTDSEN 602 (1414)
T ss_pred cccchHHHHHHHHHHhhcccccccchhhhhhcccccchhhh----------------------cccCCchhhccCCchhh
Confidence 9999999999999999999999876642 112222221210 11122222221111100
Q ss_pred cccccccccccccCCCCccccccccchhhcccccccccCCCCCccccccccccCCccccCCCCccccccccccccccccc
Q 000891 565 AVSSLHTFMNTMSQTGVPFVQSNDITVTEKLQDCLVLNGKLPGHVKMESAMSTGSVSQQADPSDVTYQSLVDRSSAIDFM 644 (1236)
Q Consensus 565 ~~~~~~~~~~~~~q~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (1236)
...+.+ ...+|+... ++.+-+.++.|.
T Consensus 603 ~dkk~~------------------------------~~tkf~l~~--nsd~~~~g~~~t--------------------- 629 (1414)
T KOG1473|consen 603 ADKKSH------------------------------MQTKFALIT--NSDGVTAGNVTT--------------------- 629 (1414)
T ss_pred hccccc------------------------------ccceecccc--cccceecccccc---------------------
Confidence 001111 111121100 000000011000
Q ss_pred cccccCcCCCCCCCCCcCCCCCcccccccccCCCccccccccCCcccccccccCccchhh----ccchh-hhHHHHHHHH
Q 000891 645 TCTSQISNDGNSGHASSCLSPNISFLSKERNHGGLLGVGTNYANKCAFMGSVFKPHSYIN----QYMHG-EFAAAAAAKL 719 (1236)
Q Consensus 645 ~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~n~~~~~~~~~~~~~p~~YiN----~Y~~g-~~aasaAa~L 719 (1236)
.+|.+ ...+.+.--...|-+++|.+||| +|..| +.|+|||+.+
T Consensus 630 ----------~gt~~----------------------~~~~~~~~t~~~~lSniP~s~~n~~w~~~tkg~~lavs~A~~~ 677 (1414)
T KOG1473|consen 630 ----------YGTGS----------------------QHKKLIARTLQQGLSNIPISYNNRKWPVYTKGFELAVSAAADL 677 (1414)
T ss_pred ----------ccchh----------------------hcchHHHhhhhhhhccCchHhhhccchhhccchhhhhhccchH
Confidence 00001 12233444466678999999999 99999 9999999999
Q ss_pred hhhccccccccccccccCcccccchhhHHHHHHhhhccccccccccccccccccCccccccccccCCCCCCCCceeehhh
Q 000891 720 AVLSSEESQASEMHKSGNTRKAMSGSISLQAKAFSSTASRFFWPCSERKLWEVPRERCSWCYSCKSPPSNRRGCMLNSAM 799 (1236)
Q Consensus 720 a~~ssee~~~~~~~~s~n~~k~~~~~~~~Q~Kafs~~~~~F~Wps~ekk~~ev~rerCGWC~sCk~s~~~~~~C~ln~a~ 799 (1236)
|.+++ |..+++.++-.|..|+.+.++..|+|+||.+|++||||+..+| +..|||||||++|+....+.++||+|.+.
T Consensus 678 ~el~s-~t~~~d~s~~~~~~~~~ssn~L~qtklesitaa~f~~~~~~~K--ri~rer~~~~~~~~l~~~s~k~~~~~~~~ 754 (1414)
T KOG1473|consen 678 AELSS-ETLEPDLSKRSNAFKAASSNILGQTKLESITAAQFFWPSPDKK--RITRERCGWCESCRLTFASRKGTMLLAAV 754 (1414)
T ss_pred HHHHH-hhcccchhhhhhhhccchhhhhcchhheeeehhhhccCCcccc--cccccccchhhhcceeeehhccccchhhc
Confidence 99999 8889999999999999999999999999999999999999999 99999999999999988899999999999
Q ss_pred hhhhhhhHHHhcCcccccCCCCChHHHHHHHHhhhhhccccccccCCChhhHHHHHHHHHhhcchhhHHHHHHHhhhccc
Q 000891 800 TVATKSAMKILNGLLAPKTGEGNLPTIVTYIMYMEESLCGLISGPFRSVSYRKKWRKQVAEACTLNSIKALLLELEENIC 879 (1236)
Q Consensus 800 ~~a~kg~~~~~~gl~~~k~~~~hl~si~~yil~mEe~L~GLl~Gp~~~~~~r~~Wrk~v~~As~~~~ik~lLL~LEsnir 879 (1236)
+.|+||+|++.+||.|.||+++.|.+|++|++++||+++|++|||++..+-|++||+.|+. .+.++++||+||+
T Consensus 755 ~gaqKGa~~r~~G~~~l~n~~~vlS~~~~~~~~~~es~~~v~v~~~~~Esnr~~~r~~L~~------r~~~~~q~ee~i~ 828 (1414)
T KOG1473|consen 755 IGAQKGAMYRNSGLFPLKNWEWVLSSIAAYWLALEESPRGVIVGEFKSESNRKQERKELLV------RRSGGKQLEENIC 828 (1414)
T ss_pred cccccccceeeeccccccChhHHHHHHHHHHHhhhccccceeecccccccchhhHHHHhhh------hhhhhhhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999988 4999999999999
Q ss_pred ceeeccchhhhhhccc-ccccccccccccccccccccCCCCCCCccccccccccCCCCCCceeeecCCcchhhhhhcccC
Q 000891 880 HIALSGDWVKLMDDWL-GDSSVIQSASCNFVTTQKRGLSGKRGRKHSVISEVTADDCNDQSFSWWQGGKSTKLISKKAIL 958 (1236)
Q Consensus 880 ~iA~s~dW~K~~D~~~-v~~s~~~~~~~~~~~~qk~g~~gkr~rk~~~~~e~~~~~~~~~~~~WwrGG~lsr~if~~~~L 958 (1236)
-+|++-+|.|.||+|. ++.|..++..-+.++.|+|++|+++ +. ..-|.++.+....+|.|||||+ |+.|+|+|+|
T Consensus 829 ~~~~~~y~~~~~~n~~rie~s~~~~ng~~v~akQ~r~pgr~~-~s--~~~ek~A~~s~ld~f~~~Rggk-s~vvl~kavL 904 (1414)
T KOG1473|consen 829 SGALSCYWPKQMDNWLRIEHSIFQSNGVTVGAKQARDPGRTK-QS--LQAEKTAPKSDLDSFTWWRGGK-SKVVLQKAVL 904 (1414)
T ss_pred cccccccchhhccCceeeeechhccCceeechhhhcCCcchh-hh--cchhhccccccccchhhhhcCc-ceeeehhhhc
Confidence 9999999999999999 9999999999999999999995544 33 3338899999999999999999 9999999999
Q ss_pred hHHHHHHHHHhcCcccccccccC--CCccccchhhhhhhhhhcccchhHHHHHHhhhcccccccccCCCcccccCCCCch
Q 000891 959 PHTIIRNAARRGGLRKISGVNYT--AEMPKRSRQLVWRAAVERSKTVSQLALQVRYIDLHVRWSELVRPEQNLQDGKGPE 1036 (1236)
Q Consensus 959 p~s~v~kAaRQgG~rki~gi~Y~--se~~rRsr~~~WraaVe~s~~~sqLaLQvR~Ld~~iRW~el~~~~~~~~~~K~~~ 1036 (1236)
-++.++|+|.|+|.+++|+..|. +.+|+|+++..|.+||+-++|++|||||+ .|+.+|+|+++
T Consensus 905 ~~~~mk~~v~~~g~ta~~k~nfl~~~y~p~~s~~s~wk~av~n~enlh~LAlQ~---------------~q~v~d~~s~~ 969 (1414)
T KOG1473|consen 905 SQSIMKKLVWQQGFTAGPKSNFLDWSYIPRRSRRSCWKAAVENSENLHQLALQL---------------RQNVQDVKSPE 969 (1414)
T ss_pred chHHHHHHhhccccccCCcccccccccccchhhhhhhhhhhcChhhHHHHHHHH---------------HHHHhccCCch
Confidence 99999999999999999999999 88999999999999999999999999998 68999999999
Q ss_pred hhhhhcccceeeeccccccceEEEEecCCcccCChhhhhhhhhhhcccCCCCccccccCCchhHhHHHHHhhccccccCC
Q 000891 1037 TEAFAFRNAIICDKKIVENKIRYGVAFGIHRHLPSRVMKNIIDIELSQDGKEKYWFPETCLPLFLIKEYEERVDMVIAPS 1116 (1236)
Q Consensus 1037 ~~a~~fr~~ii~~k~~~~~~~~Y~~~fg~~~~lp~~v~kn~~~~e~~~~~~~k~W~~E~~vPL~LlkefE~~~~~~~~~s 1116 (1236)
+.++.||||-||.|++-+++.+|+.-|++ +.+||.|.+ ||+.|.-|+| .||+.+
T Consensus 970 ~r~ai~r~~~ic~~~l~d~~~~~~~~~~s------~~~~~~~~~---------~~~~~~~~sl----~~~~fr------- 1023 (1414)
T KOG1473|consen 970 TRRAIFRNAEICIKKLYDNKEEEGESWLS------SEFSHVISS---------RPQRHEFVSL----GYEKFR------- 1023 (1414)
T ss_pred hhHHHhhhhhhhccccccCCcccccchhh------hhhhhhhhc---------ccccCceeec----cchhhh-------
Confidence 99999999999999999999999999999 889999887 9999999999 388853
Q ss_pred CCCCCchhhHHHHHhhcccccCcceeeeec
Q 000891 1117 SKKPSNELSEFQKKQLKASRKDLFSYLVCR 1146 (1236)
Q Consensus 1117 ~k~~s~~~~~~~~~~~k~~~~~~FsYL~~k 1146 (1236)
.++.-..+++++.++|.+...+|.|+-.+
T Consensus 1024 -~~~~~r~~~~q~~~~~~~~~~v~~~~~~~ 1052 (1414)
T KOG1473|consen 1024 -SLDNRRATAIQREWLKGSTANVFEIKDYW 1052 (1414)
T ss_pred -cchhhhhHHHHhhhhcccccceeeeeccC
Confidence 24455678999999999999999999877
|
|
| >KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >COG5141 PHD zinc finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0956 consensus PHD finger protein AF10 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0954 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane | Back alignment and domain information |
|---|
| >PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B | Back alignment and domain information |
|---|
| >KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] | Back alignment and domain information |
|---|
| >smart00333 TUDOR Tudor domain | Back alignment and domain information |
|---|
| >KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >smart00743 Agenet Tudor-like domain present in plant sequences | Back alignment and domain information |
|---|
| >cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains | Back alignment and domain information |
|---|
| >PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix | Back alignment and domain information |
|---|
| >PLN00163 histone H4; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1236 | ||||
| 1mm3_A | 61 | Solution Structure Of The 2nd Phd Domain From Mi2b | 4e-09 | ||
| 1mm2_A | 61 | Solution Structure Of The 2nd Phd Domain From Mi2b | 1e-08 | ||
| 1xwh_A | 66 | Nmr Structure Of The First Phd Finger Of Autoimmune | 3e-08 | ||
| 2l5u_A | 61 | Structure Of The First Phd Finger (Phd1) From Chd4 | 9e-07 | ||
| 2kft_A | 56 | Nmr Solution Structure Of The First Phd Finger Doma | 3e-06 | ||
| 3u5m_A | 207 | Crystal Structure Of Trim33 Phd-Bromo In The Free S | 2e-05 | ||
| 1f62_A | 51 | Wstf-Phd Length = 51 | 3e-04 | ||
| 3o33_A | 184 | Crystal Structure Of Trim24 Phd-Bromo In The Free S | 5e-04 | ||
| 2ld1_A | 142 | Structures And Chemical Shift Assignments For The A | 5e-04 | ||
| 2ku3_A | 71 | Solution Structure Of Brd1 Phd1 Finger Length = 71 | 9e-04 |
| >pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C- Terminal Loop Replaced By Corresponding Loop From Wstf Length = 61 | Back alignment and structure |
|
| >pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b Length = 61 | Back alignment and structure |
| >pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune Regulator Protein (Aire1): Insights Into Apeced Length = 66 | Back alignment and structure |
| >pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b) Length = 61 | Back alignment and structure |
| >pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of Human Autoimmune Regulator (Aire) In Complex With Histone H3(1-20cys) Peptide Length = 56 | Back alignment and structure |
| >pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 | Back alignment and structure |
| >pdb|1F62|A Chain A, Wstf-Phd Length = 51 | Back alignment and structure |
| >pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 | Back alignment and structure |
| >pdb|2LD1|A Chain A, Structures And Chemical Shift Assignments For The Add Domain Of The Atrx Protein Length = 142 | Back alignment and structure |
| >pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger Length = 71 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 7e-23
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 368 VDVDGNGDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAINKV 423
+ D + + CR+C G LLCCD CPS+YH C+ +P G W CP C +
Sbjct: 3 LGSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58
|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 | Back alignment and structure |
|---|
| >3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Length = 159 | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Length = 386 | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1236 | ||||
| d1mm2a_ | 61 | g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens | 5e-17 | |
| d1fp0a1 | 70 | g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- | 3e-15 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 4e-13 | |
| d1f62a_ | 51 | g.50.1.2 (A:) Williams-Beuren syndrome transcripti | 7e-13 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 7e-11 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 5e-10 | |
| d1weva_ | 88 | g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu | 1e-08 | |
| d1wesa_ | 71 | g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I | 6e-07 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 1e-06 | |
| d2pnxa1 | 51 | g.50.1.2 (A:195-245) Inhibitor of growth protein 4 | 4e-06 | |
| d1wewa_ | 78 | g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c | 3e-04 |
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: PHD domain domain: Mi2-beta (CHD4) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.2 bits (182), Expect = 5e-17
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 371 DGNGDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPEC 418
D + + CR+C G LLCCD CPS+YH C+ +P G W CP C
Sbjct: 6 DHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53
|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1236 | |||
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 98.91 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 98.87 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 98.34 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 98.22 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 97.65 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 97.54 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 97.15 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 97.13 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 96.7 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 96.49 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 96.05 |
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: PHD domain domain: Nuclear corepressor KAP-1 (TIF-1beta) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=4.9e-10 Score=85.28 Aligned_cols=53 Identities=28% Similarity=0.726 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 54432200120034672225688886442322354568999998526336426
Q 000891 369 DVDGNGDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAIN 421 (1236)
Q Consensus 369 e~d~ndD~C~VCgdgG~LLlCD~Cp~afHl~CL~PpL~~iPeGdW~Cp~C~~~ 421 (1236)
..|.....|.+|+++|+||+||+|+++||+.|++|++..+|.++|+|+.|...
T Consensus 2 ~~Dd~c~~C~~C~~~~~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 54 (70)
T d1fp0a1 2 TLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 54 (70)
T ss_dssp SSSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCCCCCCEECCCCCCC
T ss_conf 86889799877799697888999991563514899868488989899679483
|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|