Citrus Sinensis ID: 000904
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1232 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LYS2 | 1453 | ABC transporter C family | yes | no | 0.422 | 0.358 | 0.788 | 0.0 | |
| Q8LGU1 | 1464 | ABC transporter C family | no | no | 0.460 | 0.387 | 0.507 | 1e-169 | |
| Q7GB25 | 1514 | ABC transporter C family | no | no | 0.435 | 0.354 | 0.519 | 1e-161 | |
| Q9M1C7 | 1506 | ABC transporter C family | no | no | 0.487 | 0.399 | 0.454 | 1e-159 | |
| Q7FB56 | 1053 | Putative ABC transporter | no | no | 0.435 | 0.509 | 0.497 | 1e-158 | |
| Q9LK64 | 1514 | ABC transporter C family | no | no | 0.448 | 0.365 | 0.498 | 1e-156 | |
| Q8VZZ4 | 1466 | ABC transporter C family | no | no | 0.489 | 0.411 | 0.448 | 1e-151 | |
| Q9LK62 | 1493 | ABC transporter C family | no | no | 0.432 | 0.356 | 0.473 | 1e-147 | |
| Q9LZJ5 | 1539 | ABC transporter C family | no | no | 0.426 | 0.341 | 0.494 | 1e-147 | |
| Q7DM58 | 1516 | ABC transporter C family | no | no | 0.436 | 0.354 | 0.489 | 1e-144 |
| >sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 931 bits (2406), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/558 (78%), Positives = 498/558 (89%)
Query: 675 AILGEVPHTQGTILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGI 734
A L +V G ILQNSW+AANV+NP VSTL+LI+VYLLIG S L LM RS+ V++ +
Sbjct: 896 ASLAQVTFAVGQILQNSWMAANVDNPQVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMCM 955
Query: 735 RSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAY 794
+SS SLFSQLLNSLFRAPMSFYDSTPLGR+LSRVSSDLSIVDLDVPF LIF V ++ N
Sbjct: 956 KSSASLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFVVASSVNTG 1015
Query: 795 SNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGA 854
+LGVLA+VTWQVLFVS+P+++LA RLQ+YYF TAKELMR+NGTT+S VANHLAES+AGA
Sbjct: 1016 CSLGVLAIVTWQVLFVSVPMVYLAFRLQKYYFQTAKELMRINGTTRSYVANHLAESVAGA 1075
Query: 855 MTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLP 914
+TIRAF+EE+RFF K+L LIDTNASPFF +FAANEWLIQRLET+SA V++S AFCM+LLP
Sbjct: 1076 ITIRAFDEEERFFKKSLTLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMILLP 1135
Query: 915 PGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDN 974
GTF+ GFIGMALSYGLSLN LV S+QNQC LAN+IISVERLNQY H+ EAPEV+E+
Sbjct: 1136 TGTFSSGFIGMALSYGLSLNMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVIEET 1195
Query: 975 RPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALF 1034
RPP NWPV G+V+I DLQIRYR +SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLI ALF
Sbjct: 1196 RPPVNWPVTGRVEISDLQIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISALF 1255
Query: 1035 RLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWE 1094
RLVEP GGKI+VDG+DISK+G+HDLRSRFGIIPQDPTLFNGTVR+NLDPL QH+D EIWE
Sbjct: 1256 RLVEPVGGKIVVDGVDISKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAEIWE 1315
Query: 1095 VLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
VL KC L E V+EKENGLDSLVVEDGSNWSMGQRQLFCLGRA+LRRSR+LVLDEATASID
Sbjct: 1316 VLGKCQLKEVVQEKENGLDSLVVEDGSNWSMGQRQLFCLGRAVLRRSRVLVLDEATASID 1375
Query: 1155 NATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSL 1214
NATD+ILQKTIR EFADCTVITVAHRIPTVMDCTMVL+ISDG++ EYDEPMKLMK E SL
Sbjct: 1376 NATDLILQKTIRREFADCTVITVAHRIPTVMDCTMVLSISDGRIVEYDEPMKLMKDENSL 1435
Query: 1215 FGQLVREYWSHLHSAESH 1232
FG+LV+EYWSH +SA+S
Sbjct: 1436 FGKLVKEYWSHYNSADSR 1453
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 597 bits (1539), Expect = e-169, Method: Compositional matrix adjust.
Identities = 288/568 (50%), Positives = 398/568 (70%), Gaps = 1/568 (0%)
Query: 665 VGSGKSTLLAAILGEVPHTQGTILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMS 724
V G L +++LG+V WLA + P ++ LI VY +I +S F+ +
Sbjct: 894 VSRGWCLLWSSVLGQVGFVVFQAASTYWLAFAIGIPKITNTMLIGVYSIISTLSAGFVYA 953
Query: 725 RSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLI 784
R++++ LG+++SK+ FS N++F+APM F+DSTP+GR+L+R SSDL+++D DVPF+ I
Sbjct: 954 RAITTAHLGLKASKAFFSGFTNAVFKAPMLFFDSTPVGRILTRASSDLNVLDYDVPFAFI 1013
Query: 785 FAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVA 844
F V + L ++ VTWQV+ +++ + +Q YY A+A+EL+R+NGTTK+ V
Sbjct: 1014 FVVAPAVELTAALLIMTYVTWQVIIIALLALAATKVVQDYYLASARELIRINGTTKAPVM 1073
Query: 845 NHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVIS 904
N+ AE+ G +TIRAF +RFF L+L+D +A FF + AA EW+I R+ETL +
Sbjct: 1074 NYAAETSLGVVTIRAFGTAERFFKNYLNLVDADAVLFFLSNAAMEWVILRIETLQNVTLF 1133
Query: 905 SAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVP 964
+ A ++L+P G PG +G++LSY L+L + V + CTL+N IISVER+ QYM++P
Sbjct: 1134 TCALLLILIPKGYIAPGLVGLSLSYALTLTQTQVFLTRWYCTLSNSIISVERIKQYMNIP 1193
Query: 965 SEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGS 1024
E P +++D RPP +WP G + + +L+IRYRP++PLVLKGISCTF G ++G+VGRTGS
Sbjct: 1194 EEPPAIIDDKRPPSSWPSNGTIHLQELKIRYRPNAPLVLKGISCTFREGTRVGVVGRTGS 1253
Query: 1025 GKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPL 1084
GK+TLI ALFRLVEPA G IL+DGIDISK+GL DLR + IIPQ+PTLF G +R NLDPL
Sbjct: 1254 GKSTLISALFRLVEPASGCILIDGIDISKIGLKDLRMKLSIIPQEPTLFRGCIRTNLDPL 1313
Query: 1085 SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRIL 1144
++D EIW+ L KC L + N LDS V ++G NWS+GQRQLFCLGR LL+R++IL
Sbjct: 1314 GVYSDDEIWKALEKCQLKTTISNLPNKLDSSVSDEGENWSVGQRQLFCLGRVLLKRNKIL 1373
Query: 1145 VLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEP 1204
VLDEATASID+ATD I+Q+ IR EFADCTVITVAHR+PTV+D MV+ +S G L EY+EP
Sbjct: 1374 VLDEATASIDSATDAIIQRIIREEFADCTVITVAHRVPTVIDSDMVMVLSFGDLVEYNEP 1433
Query: 1205 MKLMKREGSLFGQLVREYWSHLHSAESH 1232
KLM+ + S F +LV EYW+ S
Sbjct: 1434 SKLMETD-SYFSKLVAEYWASCRGNSSQ 1460
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 570 bits (1468), Expect = e-161, Method: Compositional matrix adjust.
Identities = 284/547 (51%), Positives = 375/547 (68%), Gaps = 11/547 (2%)
Query: 687 ILQNSWLA-ANVE----NPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLF 741
I N W+A AN + V L++VY + F S++F+ R+ G+ +++ LF
Sbjct: 964 IASNWWMAWANPQTEGDESKVDPTLLLIVYTALAFGSSVFIFVRAALVATFGLAAAQKLF 1023
Query: 742 SQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLA 801
+L S+FRAPMSF+DSTP GR+L+RVS D S+VDLD+PF L T + V+
Sbjct: 1024 LNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLCGIVAVMT 1083
Query: 802 VVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFE 861
VTWQV + +PV +Q+YY A+++EL+R+ KS + + ESIAGA TIR F
Sbjct: 1084 NVTWQVFLLVVPVAVACFWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFG 1143
Query: 862 EEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLL---PPGTF 918
+E RF +NL L+D PFF + AA EWL R+E LS V AFCMVLL P GT
Sbjct: 1144 QEKRFIKRNLYLLDCFVRPFFCSIAAIEWLCLRMELLSTLVF---AFCMVLLVSFPHGTI 1200
Query: 919 TPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPP 978
P G+A++YGL+LN L I + C L N IIS+ER+ QY + EAP ++ED RPP
Sbjct: 1201 DPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQIVGEAPAIIEDFRPPS 1260
Query: 979 NWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE 1038
+WP G +++ D+++RY + P VL G+SC F GG KIGIVGRTGSGK+TLI ALFRL+E
Sbjct: 1261 SWPATGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRLIE 1320
Query: 1039 PAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAK 1098
P GKI +D IDIS++GLHDLRSR GIIPQDPTLF GT+R NLDPL +H+D +IWE L K
Sbjct: 1321 PTAGKITIDNIDISQIGLHDLRSRLGIIPQDPTLFEGTIRANLDPLEEHSDDKIWEALDK 1380
Query: 1099 CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158
LG+ VR K+ LDS V+E+G NWS+GQRQL LGRALL++++ILVLDEATAS+D ATD
Sbjct: 1381 SQLGDVVRGKDLKLDSPVLENGDNWSVGQRQLVSLGRALLKQAKILVLDEATASVDTATD 1440
Query: 1159 MILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218
++QK IR EF DCTV T+AHRIPTV+D +VL +SDG++AE+D P +L++ + S+F +L
Sbjct: 1441 NLIQKIIRTEFEDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPARLLEDKSSMFLKL 1500
Query: 1219 VREYWSH 1225
V EY S
Sbjct: 1501 VTEYSSR 1507
|
Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 564 bits (1454), Expect = e-159, Method: Compositional matrix adjust.
Identities = 289/636 (45%), Positives = 410/636 (64%), Gaps = 35/636 (5%)
Query: 622 ENVNHVISIKSASFSWEESSSKPTM-------------RNISLEVRPGQKVAICGEVGS- 667
E ++ ++SI+ +S +++E S T NIS E + + + E
Sbjct: 856 EALDSILSIEKSSRNFKEGSKDDTASIAESLQTHCDSEHNISTENKKKEAKLVQDEETEK 915
Query: 668 ---GKSTLLA-------------AILGEVPHTQGTILQNSWLA----ANVEN-PNVSTLR 706
GK LA IL + I N W+A E+ P + R
Sbjct: 916 GVIGKEVYLAYLTTVKGGLLVPFIILAQSCFQMLQIASNYWMAWTAPPTAESIPKLGMGR 975
Query: 707 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLS 766
+++VY L+ S+L +++R++ + G+ ++++ FS++L S+FRAPMSF+DSTP GR+L+
Sbjct: 976 ILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFSRMLCSIFRAPMSFFDSTPTGRILN 1035
Query: 767 RVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYF 826
R S+D S++DL++ L + + + V++ V WQV + IPV + QRYY
Sbjct: 1036 RASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAWQVCVIFIPVAVACVFYQRYYT 1095
Query: 827 ATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFA 886
TA+EL R++G ++ + +H AES+AGA TIRAF++ DRF + NL LID+++ P+F +
Sbjct: 1096 PTARELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWFHVAS 1155
Query: 887 ANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCT 946
A EWL RL LS V + + +V LP G P G+ ++YGLSLN I N C
Sbjct: 1156 AMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVTYGLSLNVLQATVIWNICN 1215
Query: 947 LANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGI 1006
N +ISVER+ QY +PSEAP V++ +RP NWP VG + DLQ+RY P VLK I
Sbjct: 1216 AENKMISVERILQYSKIPSEAPLVIDGHRPLDNWPNVGSIVFRDLQVRYAEHFPAVLKNI 1275
Query: 1007 SCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGII 1066
+C F GG KIG+VGRTGSGK+TLI ALFR+VEP+ G I++D +DI+K+GLHDLRSR GII
Sbjct: 1276 TCEFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSQGTIVIDNVDITKIGLHDLRSRLGII 1335
Query: 1067 PQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMG 1126
PQDP LF+GT+R NLDPL+Q+TD EIWE + KC LG+ +R K+ LD+ VVE+G NWS+G
Sbjct: 1336 PQDPALFDGTIRLNLDPLAQYTDHEIWEAIDKCQLGDVIRAKDERLDATVVENGENWSVG 1395
Query: 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD 1186
QRQL CLGR LL++S ILVLDEATAS+D+ATD ++QK I EF D TV+T+AHRI TV++
Sbjct: 1396 QRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVVTIAHRIHTVIE 1455
Query: 1187 CTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222
+VL +SDG++AE+D P KL++RE S F +L++EY
Sbjct: 1456 SDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEY 1491
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 559 bits (1440), Expect = e-158, Method: Compositional matrix adjust.
Identities = 269/541 (49%), Positives = 378/541 (69%), Gaps = 5/541 (0%)
Query: 687 ILQNSWLA----ANVEN-PNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLF 741
I N W+A E+ P + R+++VY L+ S+L +++R++ + G+ ++++ F
Sbjct: 498 IASNYWMAWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFF 557
Query: 742 SQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLA 801
S++L S+FRAPMS++DSTP GR+L+R S+D S++DL++ L + + + V++
Sbjct: 558 SRMLCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMS 617
Query: 802 VVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFE 861
V WQV + IPV + QRYY T +EL R++G ++ + +H AES+AGA TIRAF+
Sbjct: 618 QVAWQVCVIFIPVAVACVFYQRYYTPTERELSRMSGVERAPILHHFAESLAGATTIRAFD 677
Query: 862 EEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPG 921
+ DRF + NL LID+++ P+F +A EWL RL LS V + + +V LP G P
Sbjct: 678 QRDRFISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPS 737
Query: 922 FIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWP 981
G+ ++YGLSLN I N C N +ISVER+ Q+ +PSEAP V++D RP NWP
Sbjct: 738 IAGLGVTYGLSLNVLQATVIWNICNAENKMISVERILQHSKIPSEAPLVIDDQRPLDNWP 797
Query: 982 VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG 1041
VG + DLQ+RY P VLK I+C F GG KIG+VGRTGSGK+TLI ALFR+VEP+
Sbjct: 798 NVGSIVFRDLQVRYAEHFPAVLKNITCAFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSH 857
Query: 1042 GKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHL 1101
G I++D +DI+K+GLHDLRSR GIIPQD LF+GT+R NLDPL+Q+TD+EIWE L KC L
Sbjct: 858 GTIVIDNVDITKIGLHDLRSRLGIIPQDNALFDGTIRLNLDPLAQYTDREIWEALDKCQL 917
Query: 1102 GEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMIL 1161
G+ +R K+ LD+ VVE+G NWS+GQRQL CLGR LL++S ILVLDEATAS+D+ATD ++
Sbjct: 918 GDVIRAKDEKLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVI 977
Query: 1162 QKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221
QK I EF D TV+T+AHRI TV++ +VL +SDG++AE+D P KL++RE S F +L++E
Sbjct: 978 QKIINQEFKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKE 1037
Query: 1222 Y 1222
Y
Sbjct: 1038 Y 1038
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 554 bits (1427), Expect = e-156, Method: Compositional matrix adjust.
Identities = 279/560 (49%), Positives = 379/560 (67%), Gaps = 7/560 (1%)
Query: 676 ILGEVPHTQGTILQNSWLA------ANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSS 729
+LG+V I N W+A +V+ P V L++VY+ + F S+L ++ R+
Sbjct: 954 LLGQVLFQLLQIGSNYWMAWATPVSEDVQAP-VKLSTLMIVYVALAFGSSLCILLRATLL 1012
Query: 730 VVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGA 789
V G +++ LF ++ + +FR+PMSF+DSTP GR++SR S+D S VDL++P+
Sbjct: 1013 VTAGYKTATELFHKMHHCIFRSPMSFFDSTPSGRIMSRASTDQSAVDLELPYQFGSVAIT 1072
Query: 790 TTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAE 849
+GV++ V+W V V IPV+ +I QRYY A A+EL RL G K+ + H +E
Sbjct: 1073 VIQLIGIIGVMSQVSWLVFLVFIPVVAASIWYQRYYIAAARELSRLVGVCKAPLIQHFSE 1132
Query: 850 SIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFC 909
+I+GA TIR+F +E RF + N+ L D + P F T A EWL RL+ LS+ +
Sbjct: 1133 TISGATTIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVF 1192
Query: 910 MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPE 969
+V +P G P G+A++YGLSLN+ I C L N IISVER+ QY VPSE P
Sbjct: 1193 LVSIPTGVIDPSLAGLAVTYGLSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPL 1252
Query: 970 VVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTL 1029
V+E NRP +WP G+V+I DLQ+RY P PLVL+GI+CTF+GG + GIVGRTGSGK+TL
Sbjct: 1253 VIESNRPEQSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTL 1312
Query: 1030 IGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTD 1089
I LFR+VEP+ G+I +DG++I +GLHDLR R IIPQDPT+F GT+R NLDPL ++TD
Sbjct: 1313 IQTLFRIVEPSAGEIRIDGVNILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLDPLEEYTD 1372
Query: 1090 QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEA 1149
+IWE L KC LG+ VR+KE LDS V E+G NWSMGQRQL CLGR LL+RS+ILVLDEA
Sbjct: 1373 DQIWEALDKCQLGDEVRKKEQKLDSSVSENGDNWSMGQRQLVCLGRVLLKRSKILVLDEA 1432
Query: 1150 TASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMK 1209
TAS+D ATD ++QKT+R F+DCTVIT+AHRI +V+D MVL +S+G + EYD P++L++
Sbjct: 1433 TASVDTATDNLIQKTLREHFSDCTVITIAHRISSVIDSDMVLLLSNGIIEEYDTPVRLLE 1492
Query: 1210 REGSLFGQLVREYWSHLHSA 1229
+ S F +LV EY S S+
Sbjct: 1493 DKSSSFSKLVAEYTSRSSSS 1512
|
Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 536 bits (1380), Expect = e-151, Method: Compositional matrix adjust.
Identities = 277/617 (44%), Positives = 390/617 (63%), Gaps = 14/617 (2%)
Query: 617 QKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAIC-----GEVGSGKST 671
+K + N V+ K + S +KP+ + + E R KV + G +
Sbjct: 842 EKSTTDKENEVLHHKEKQEN--GSDNKPSGQLVQEEEREKGKVGFTVYKKYMALAYGGAV 899
Query: 672 LLAAILGEVPHTQGTILQNSWL------AANVENPNVSTLRLIVVYLLIGFVSTLFLMSR 725
+ ++ +V +I N W+ + +VE P VS LI+VY+L+ S+ ++ R
Sbjct: 900 IPLILVVQVLFQLLSIGSNYWMTWVTPVSKDVEPP-VSGFTLILVYVLLAVASSFCILIR 958
Query: 726 SLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIF 785
+L + G + + LF+Q+ +FRA MSF+D+TP+GR+L+R S+D S+ DL +P +
Sbjct: 959 ALLVAMTGFKMATELFTQMHLRIFRASMSFFDATPMGRILNRASTDQSVADLRLPGQFAY 1018
Query: 786 AVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVAN 845
A N +GV+ V WQVL V IPV+ ++YY + A+EL RL G ++S V +
Sbjct: 1019 VAIAAINILGIIGVIVQVAWQVLIVFIPVVAACAWYRQYYISAARELARLAGISRSPVVH 1078
Query: 846 HLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISS 905
H +E+++G TIR+F++E RF + L D + F + A EWL RLE LS +S
Sbjct: 1079 HFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAFAS 1138
Query: 906 AAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPS 965
+ +V P G P G+A++Y L+LN+ I C L N +ISVER+ QY ++PS
Sbjct: 1139 SLVILVSAPEGVINPSLAGLAITYALNLNTLQATLIWTLCDLENKMISVERMLQYTNIPS 1198
Query: 966 EAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSG 1025
E P V+E RP +WP G++ IC+LQ+RY P P+VL G++CTF GG K GIVGRTG G
Sbjct: 1199 EPPLVIETTRPEKSWPSRGEITICNLQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCG 1258
Query: 1026 KTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS 1085
K+TLI LFR+VEPA G+I +DGI+I +GLHDLRSR IIPQDPT+F GT+R NLDPL
Sbjct: 1259 KSTLIQTLFRIVEPAAGEIRIDGINILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLE 1318
Query: 1086 QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV 1145
++TD +IWE L C LG+ VR+KE LDS V E+G NWS+GQRQL CLGR LL+RS++LV
Sbjct: 1319 EYTDDQIWEALDNCQLGDEVRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKLLV 1378
Query: 1146 LDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPM 1205
LDEATASID ATD ++Q+T+R FADCTVIT+AHRI +V+D MVL + G + E+D P
Sbjct: 1379 LDEATASIDTATDNLIQETLRHHFADCTVITIAHRISSVIDSDMVLLLDQGLIKEHDSPA 1438
Query: 1206 KLMKREGSLFGQLVREY 1222
+L++ SLF +LV EY
Sbjct: 1439 RLLEDRSSLFSKLVAEY 1455
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 523 bits (1346), Expect = e-147, Method: Compositional matrix adjust.
Identities = 255/538 (47%), Positives = 358/538 (66%), Gaps = 5/538 (0%)
Query: 690 NSWLA-----ANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQL 744
N W+A + P VS LI+VY+ + S+ ++ R++ S + G + + LF+Q+
Sbjct: 940 NYWMAWVTPVSKDVKPLVSGSTLILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQM 999
Query: 745 LNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVT 804
+FRA MSF+D+TP+GR+L+R S+D S VDL +P A N +GV+ V
Sbjct: 1000 HFRIFRASMSFFDATPIGRILNRASTDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVA 1059
Query: 805 WQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED 864
WQVL V IPVI ++YY + A+EL RL+G ++S + H +E+++G TIR+F++E
Sbjct: 1060 WQVLIVFIPVIAACTWYRQYYISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEP 1119
Query: 865 RFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIG 924
RF + L D + F +A EWL RL+ LS + + +V +P G P F G
Sbjct: 1120 RFRTDIMRLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAG 1179
Query: 925 MALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVG 984
+A++Y L+LNS I C L N +ISVER+ QY+ +PSE V+E RP +WP G
Sbjct: 1180 LAVTYALNLNSLQATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRG 1239
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
++ IC+LQ+RY P P+VL+G++CTF GG K GIVGRTG GK+TLI LFR+VEPA G+I
Sbjct: 1240 EITICNLQVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEI 1299
Query: 1045 LVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEA 1104
+DGI+I +GLHDLRSR IIPQ+PT+F GTVR NLDPL ++ D +IWE L KC LG+
Sbjct: 1300 RIDGINILTIGLHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQLGDE 1359
Query: 1105 VREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKT 1164
+R+KE LDS V E+G NWS+GQRQL CLGR LL+RS++L+LDEATAS+D ATD ++Q+T
Sbjct: 1360 IRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKVLILDEATASVDTATDTLIQET 1419
Query: 1165 IRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222
+R F+ CTVIT+AHRI +V+D MVL + G + E+D P +L++ + S F +LV EY
Sbjct: 1420 LRQHFSGCTVITIAHRISSVIDSDMVLLLDQGLIEEHDSPARLLEDKSSSFSKLVAEY 1477
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 522 bits (1345), Expect = e-147, Method: Compositional matrix adjust.
Identities = 266/538 (49%), Positives = 372/538 (69%), Gaps = 12/538 (2%)
Query: 692 WLAANVENPNVSTLR---LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSL 748
WLA N + I VY++I VS + + R+ LG+++++ F Q+LNSL
Sbjct: 1000 WLAYETSAKNEVSFDATVFIRVYVIIAAVSIVLVCLRAFYVTHLGLKTAQIFFKQILNSL 1059
Query: 749 FRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVT---- 804
APMSF+D+TP GR+LSR S+D + VD+ +PF +G Y+ L + +VT
Sbjct: 1060 VHAPMSFFDTTPSGRILSRASTDQTNVDIFIPF----MIGLVATMYTTLLSIFIVTCQYA 1115
Query: 805 WQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED 864
W +F IP+ +L I + YY A+++EL RL+ TK+ V +H +ESIAG MTIRAF+++
Sbjct: 1116 WPTVFFIIPLGWLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRAFKKQP 1175
Query: 865 RFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIG 924
F +N+ ++ N F +NEWL RLE + + V+ +A MV+LP P +G
Sbjct: 1176 MFRQENVKRVNANLRMDFHNNGSNEWLGFRLELIGSWVLCISALFMVMLPSNIIKPENVG 1235
Query: 925 MALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVG 984
++LSYGLSLN L +I C + N ++SVER+ Q+ +P+EA ++++RPPPNWP G
Sbjct: 1236 LSLSYGLSLNGVLFWAIYLSCFIENKMVSVERIKQFTDIPAEAKWEIKESRPPPNWPYKG 1295
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
+ + D+++RYRP++PLVLKG++ +GG KIG+VGRTGSGK+TLI LFRLVEP+GGKI
Sbjct: 1296 NIRLEDVKVRYRPNTPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQVLFRLVEPSGGKI 1355
Query: 1045 LVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEA 1104
++DGIDI LGLHDLRSRFGIIPQ+P LF GTVR N+DP +++D+EIW+ L +C L +
Sbjct: 1356 IIDGIDICTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEKYSDEEIWKSLERCQLKDV 1415
Query: 1105 VREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKT 1164
V K LDSLV ++G NWS+GQRQL CLGR +L+RSRIL LDEATAS+D+ TD ++QK
Sbjct: 1416 VASKPEKLDSLVADNGENWSVGQRQLLCLGRVMLKRSRILFLDEATASVDSQTDAMIQKI 1475
Query: 1165 IRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222
IR +F+DCT+I++AHRIPTVMDC VL I GK EYD P++L++R+ SLF LV+EY
Sbjct: 1476 IREDFSDCTIISIAHRIPTVMDCDRVLVIDAGKAKEYDSPVRLLERQ-SLFAALVQEY 1532
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 514 bits (1324), Expect = e-144, Method: Compositional matrix adjust.
Identities = 266/543 (48%), Positives = 368/543 (67%), Gaps = 5/543 (0%)
Query: 684 QGTIL-QNSWLAANVENPNVSTLR---LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKS 739
QG+++ + WLA N + I+ Y++I VS + + RS LG+++++
Sbjct: 968 QGSLMASDYWLAYETSAKNAISFDASVFILGYVIIALVSIVLVSIRSYYVTHLGLKTAQI 1027
Query: 740 LFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGV 799
F Q+LNS+ APMSF+D+TP GR+LSR S+D + VD+ +PF L V T S V
Sbjct: 1028 FFRQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDILIPFMLGLVVSMYTTLLSIFIV 1087
Query: 800 LAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRA 859
W F IP+ +L I + YY A+++EL R++ TK+ + +H +ESIAG MTIR+
Sbjct: 1088 TCQYAWPTAFFVIPLGWLNIWYRNYYLASSRELTRMDSITKAPIIHHFSESIAGVMTIRS 1147
Query: 860 FEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFT 919
F +++ F +N+ ++ N F +NEWL RLE + + V+ +A MVLLP
Sbjct: 1148 FRKQELFRQENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNVIR 1207
Query: 920 PGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPN 979
P +G++LSYGLSLNS L +I C + N ++SVER+ Q+ +PSE+ ++ PP N
Sbjct: 1208 PENVGLSLSYGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPSESEWERKETLPPSN 1267
Query: 980 WPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP 1039
WP G V + DL++RYRP++PLVLKGI+ +GG K+G+VGRTGSGK+TLI LFRLVEP
Sbjct: 1268 WPFHGNVHLEDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEP 1327
Query: 1040 AGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKC 1099
+GGKI++DGIDIS LGLHDLRSRFGIIPQ+P LF GTVR N+DP Q++D+EIW+ L +C
Sbjct: 1328 SGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIWKSLERC 1387
Query: 1100 HLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM 1159
L + V K LDSLVV++G NWS+GQRQL CLGR +L+RSR+L LDEATAS+D+ TD
Sbjct: 1388 QLKDVVATKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFLDEATASVDSQTDA 1447
Query: 1160 ILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219
++QK IR +FA CT+I++AHRIPTVMD VL I GK E+D P +L++R SLF LV
Sbjct: 1448 VIQKIIREDFASCTIISIAHRIPTVMDGDRVLVIDAGKAKEFDSPARLLERP-SLFAALV 1506
Query: 1220 REY 1222
+EY
Sbjct: 1507 QEY 1509
|
Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1232 | ||||||
| 359490537 | 1532 | PREDICTED: ABC transporter C family memb | 0.556 | 0.447 | 0.727 | 0.0 | |
| 147838710 | 1480 | hypothetical protein VITISV_018996 [Viti | 0.556 | 0.462 | 0.724 | 0.0 | |
| 255545090 | 1481 | multidrug resistance-associated protein | 0.556 | 0.462 | 0.730 | 0.0 | |
| 302143690 | 1395 | unnamed protein product [Vitis vinifera] | 0.382 | 0.337 | 0.853 | 0.0 | |
| 224116838 | 1423 | multidrug resistance protein ABC transpo | 0.439 | 0.380 | 0.870 | 0.0 | |
| 356535814 | 1479 | PREDICTED: ABC transporter C family memb | 0.566 | 0.471 | 0.686 | 0.0 | |
| 357443747 | 1516 | Multidrug resistance protein ABC transpo | 0.444 | 0.361 | 0.815 | 0.0 | |
| 224120568 | 1240 | multidrug resistance protein ABC transpo | 0.443 | 0.441 | 0.855 | 0.0 | |
| 356534063 | 1509 | PREDICTED: ABC transporter C family memb | 0.441 | 0.360 | 0.824 | 0.0 | |
| 359490553 | 1483 | PREDICTED: ABC transporter C family memb | 0.569 | 0.473 | 0.638 | 0.0 |
| >gi|359490537|ref|XP_002267650.2| PREDICTED: ABC transporter C family member 10-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1034 bits (2674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/687 (72%), Positives = 582/687 (84%), Gaps = 2/687 (0%)
Query: 1 MGDLWRMFCGESGCSDIGGEPCDNAFLLLSDPNSCINHALIICFDVLLLAMLLFNMIQKS 60
MGDLW MFCGE C D GG C + F+ + P+SC NHAL +CFD+LL M LF MIQ++
Sbjct: 53 MGDLWTMFCGEPSCLDSGG--CSSEFIFFNHPSSCANHALTVCFDILLFVMFLFTMIQRT 110
Query: 61 SSKSLYIPVRFQRFTTLQKVAAVVNSCLGIAYLCLGTWILEEKLRKTHTALPLNWWLLVL 120
SSK +++P +FQRF+ LQ +A+ N CLG+ YL LG WILEE LRKT LPL+WWLL L
Sbjct: 111 SSKPVHVPGQFQRFSPLQISSAIFNGCLGLVYLGLGVWILEENLRKTQIVLPLHWWLLPL 170
Query: 121 FQGVTWLLVSLIVSLRGNHLPRAPMRLLSVLSFLFAGTVCVLSIFAAILSKDVTIKTAVD 180
QG TWLLV L+VSLRG +LPR+P+R+LS+L+FLF+G VLSIF+AI+ K+ +++ ++
Sbjct: 171 LQGFTWLLVGLMVSLRGQYLPRSPLRILSILAFLFSGITGVLSIFSAIVYKEASVEIVLN 230
Query: 181 VLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKDHSAGHITGFAAAGF 240
VLS PGAILLLLCAYK +K+EETD + +GLY PLNGEA+G K S G +T FA AGF
Sbjct: 231 VLSLPGAILLLLCAYKGYKYEETDKIVNGSGLYTPLNGEADGSAKTDSVGDVTPFAKAGF 290
Query: 241 FSRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSV 300
FS ++FWWLNPLMKRG +KTL +EDIP LR+ ++AESCY QFL++L KQKQ EPSSQPS+
Sbjct: 291 FSSMSFWWLNPLMKRGTKKTLENEDIPKLREEDRAESCYLQFLEELIKQKQIEPSSQPSI 350
Query: 301 LRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVA 360
LR II+CYW+DIF+SGFFAL+K+LTLS GPLLLNAFI V EGK FK EGYVLA+ LFV+
Sbjct: 351 LRVIILCYWKDIFISGFFALVKILTLSTGPLLLNAFIKVAEGKELFKNEGYVLAMALFVS 410
Query: 361 KILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYR 420
K +ESLSQRQWYFRSRLIGL+VRSLLTAAIYKKQLRLSNAA+++HS GEI NYVTVDAYR
Sbjct: 411 KNVESLSQRQWYFRSRLIGLRVRSLLTAAIYKKQLRLSNAAKMIHSSGEITNYVTVDAYR 470
Query: 421 IGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTK 480
IGEFPFWFHQ WTTS+QLCI L+ILF+ +GLAT AALVVI++TVLCNAPLAKLQHKFQ+K
Sbjct: 471 IGEFPFWFHQTWTTSLQLCIVLVILFNILGLATFAALVVIILTVLCNAPLAKLQHKFQSK 530
Query: 481 LMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLF 540
LMVAQDERL+ACSEALVNMKVLKLYAWE HFKN IE LRNVEYKWLS VQLRK YN FLF
Sbjct: 531 LMVAQDERLRACSEALVNMKVLKLYAWENHFKNVIEKLRNVEYKWLSGVQLRKGYNGFLF 590
Query: 541 WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSR 600
WSSPVLVS ATFGAC+FL +PL ASNVFTFVA LRLVQDPIR IPDVIGV IQA VAF+R
Sbjct: 591 WSSPVLVSAATFGACFFLGIPLNASNVFTFVAALRLVQDPIRSIPDVIGVVIQAKVAFAR 650
Query: 601 IVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVA 660
IV FLEAPELQ+ N+RQK NIEN+++ ISIKSA+FSWEE SK T+R+ISLEVR G+KVA
Sbjct: 651 IVKFLEAPELQTSNVRQKSNIENISNAISIKSANFSWEEKLSKSTLRDISLEVRTGEKVA 710
Query: 661 ICGEVGSGKSTLLAAILGEVPHTQGTI 687
ICGEVGSGKSTLLAAILGE+P QGTI
Sbjct: 711 ICGEVGSGKSTLLAAILGEIPDVQGTI 737
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147838710|emb|CAN76203.1| hypothetical protein VITISV_018996 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1030 bits (2663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/687 (72%), Positives = 580/687 (84%), Gaps = 2/687 (0%)
Query: 1 MGDLWRMFCGESGCSDIGGEPCDNAFLLLSDPNSCINHALIICFDVLLLAMLLFNMIQKS 60
MGDLW FCGE C D GG C + F+ + P+SC NHAL +CFD+LL M LF MIQ++
Sbjct: 1 MGDLWTXFCGEPSCLDSGG--CSSEFIFFNHPSSCANHALTVCFDILLFVMFLFTMIQRT 58
Query: 61 SSKSLYIPVRFQRFTTLQKVAAVVNSCLGIAYLCLGTWILEEKLRKTHTALPLNWWLLVL 120
SSK +++P +FQRF+ LQ +A+ N CLG+ YL LG WILEE LRKT LPL+WWLL L
Sbjct: 59 SSKPVHVPGQFQRFSPLQISSAIFNGCLGLVYLXLGVWILEENLRKTQIVLPLHWWLLPL 118
Query: 121 FQGVTWLLVSLIVSLRGNHLPRAPMRLLSVLSFLFAGTVCVLSIFAAILSKDVTIKTAVD 180
QG TWLLV L+VSLRG +LPR+P+R+LS+L+FLF+G VLSIF+AI+ K+ +++ ++
Sbjct: 119 LQGFTWLLVGLMVSLRGQYLPRSPLRILSILAFLFSGITGVLSIFSAIVYKEASVEIVLN 178
Query: 181 VLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKDHSAGHITGFAAAGF 240
VLS PGAILLLLCAYK +K+EETD + +GLY PLNGEA+G K S G +T FA AGF
Sbjct: 179 VLSLPGAILLLLCAYKGYKYEETDKIVNGSGLYTPLNGEADGSAKTDSVGDVTPFAKAGF 238
Query: 241 FSRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSV 300
FS ++FWWLNPLMKRG +KTL +EDIP LR+ ++AESCY QFL++L KQKQ EPSSQPS+
Sbjct: 239 FSSMSFWWLNPLMKRGTKKTLENEDIPKLREEDRAESCYLQFLEELIKQKQIEPSSQPSI 298
Query: 301 LRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVA 360
LR II+CYW+DIF+SGFFAL+K+LTLS GPLLLNAFI V EGK FK EGYVLA+ LFV+
Sbjct: 299 LRVIILCYWKDIFISGFFALVKILTLSTGPLLLNAFIKVAEGKELFKNEGYVLAMALFVS 358
Query: 361 KILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYR 420
K +ESLSQRQWYFRSRLIGL+VRSLLTAAIYKKQLRLSNAA+++HS GEI NYVTVD YR
Sbjct: 359 KNVESLSQRQWYFRSRLIGLRVRSLLTAAIYKKQLRLSNAAKMIHSSGEITNYVTVDXYR 418
Query: 421 IGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTK 480
IGEFPFWFHQ WTTS+QLCI L+ILF+ +GLAT AALVVI++TVLCNAPLAKLQHKFQ+K
Sbjct: 419 IGEFPFWFHQTWTTSLQLCIVLVILFNILGLATFAALVVIILTVLCNAPLAKLQHKFQSK 478
Query: 481 LMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLF 540
LMVAQDERL+ACSEALVNMKVLKLYAWE HFKN IE LRNVEYKWLS VQLRK YN FLF
Sbjct: 479 LMVAQDERLRACSEALVNMKVLKLYAWENHFKNVIEKLRNVEYKWLSGVQLRKGYNGFLF 538
Query: 541 WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSR 600
WSSPVLVS ATFGAC+FL +PL ASNVFTFVA LRLVQDPIR IPDVIGV IQA VAF+R
Sbjct: 539 WSSPVLVSAATFGACFFLGIPLNASNVFTFVAALRLVQDPIRSIPDVIGVVIQAKVAFAR 598
Query: 601 IVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVA 660
IV FLEAPELQ+ N+RQK NIEN+++ ISIKSA+FSWEE SK T+R+ISLEVR G+KVA
Sbjct: 599 IVKFLEAPELQTSNVRQKSNIENISNAISIKSANFSWEEKLSKSTLRDISLEVRTGEKVA 658
Query: 661 ICGEVGSGKSTLLAAILGEVPHTQGTI 687
ICGEVGSGKSTLLAAILGE+P QGTI
Sbjct: 659 ICGEVGSGKSTLLAAILGEIPDVQGTI 685
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545090|ref|XP_002513606.1| multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative [Ricinus communis] gi|223547514|gb|EEF49009.1| multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1025 bits (2650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/687 (73%), Positives = 582/687 (84%), Gaps = 2/687 (0%)
Query: 1 MGDLWRMFCGESGCSDIGGEPCDNAFLLLSDPNSCINHALIICFDVLLLAMLLFNMIQKS 60
M DLW +FCG+SG SDI G P + F++LS P+SC+NH+LII D LLL +LLF IQKS
Sbjct: 1 MEDLWTLFCGDSGSSDIKGRPFGSDFVVLSQPSSCVNHSLIIFLDFLLLVLLLFISIQKS 60
Query: 61 SSKSLYIPVRFQRFTTLQKVAAVVNSCLGIAYLCLGTWILEEKLRKTHTALPLNWWLLVL 120
S K IP R++ + LQ + V N LG YLC G WILEEKLRK +ALPL+ LL+
Sbjct: 61 SLKRDKIPPRYRGLSYLQIGSLVFNGGLGFVYLCSGAWILEEKLRKDQSALPLSRSLLLF 120
Query: 121 FQGVTWLLVSLIVSLRGNHLPRAPMRLLSVLSFLFAGTVCVLSIFAAILSKDVTIKTAVD 180
FQG TWLLVSL +SLRG LPR P+RLL+V++F+ AG VC LS+FAAIL V++KTA+D
Sbjct: 121 FQGFTWLLVSLTISLRGKQLPRTPLRLLAVVAFVVAGIVCALSLFAAILGDIVSVKTALD 180
Query: 181 VLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKDHSAGHITGFAAAGF 240
V+SFPGAIL+L CAYK + EE D I ENGLYAPLNGE +G+ K S +T F AGF
Sbjct: 181 VVSFPGAILMLFCAYKSYVEEEVD--ISENGLYAPLNGETDGISKADSFVQVTPFGKAGF 238
Query: 241 FSRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSV 300
FS ++FWWLN LMK+G+EKTL DEDIP LR+AEQAESCY FL+Q+NKQKQA+ SSQPS+
Sbjct: 239 FSSMSFWWLNSLMKKGKEKTLEDEDIPKLRQAEQAESCYLMFLEQVNKQKQAKSSSQPSL 298
Query: 301 LRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVA 360
RTII C+W+DI +SGFFA+LK+LTLSAGPLLLN FILV EGKA FKYEGYVLA+TLF++
Sbjct: 299 FRTIISCHWKDILISGFFAMLKILTLSAGPLLLNNFILVAEGKASFKYEGYVLALTLFIS 358
Query: 361 KILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYR 420
K LESLSQRQWYFRSRLIGLKVRSLLTAAIY+KQLRLSN RLMHSG EIMNYVTVDAYR
Sbjct: 359 KSLESLSQRQWYFRSRLIGLKVRSLLTAAIYRKQLRLSNTGRLMHSGSEIMNYVTVDAYR 418
Query: 421 IGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTK 480
IGEFPFWFHQ WTTS+QLCI+L+ILF+AVGLAT+AALVVI+ITVLCN PLAKLQHKFQ+K
Sbjct: 419 IGEFPFWFHQTWTTSLQLCISLVILFNAVGLATLAALVVIIITVLCNTPLAKLQHKFQSK 478
Query: 481 LMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLF 540
LM AQDERLKACSEALVNMKVLKLYAWE+HFKN IE LR VE+KWLSAVQLRKAYN+FLF
Sbjct: 479 LMEAQDERLKACSEALVNMKVLKLYAWESHFKNVIENLREVEHKWLSAVQLRKAYNSFLF 538
Query: 541 WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSR 600
WSSP+LVS ATFGACYFL VPL+A+NVFTFVATLRLVQDPIR IPDVIGV IQA VAF+R
Sbjct: 539 WSSPLLVSAATFGACYFLKVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFAR 598
Query: 601 IVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVA 660
I+ FLEAPELQ+ N++QK ++++ NH I SA+FSWEE+SSKPT+RN++LE+RPG KVA
Sbjct: 599 ILKFLEAPELQNGNLQQKQSMDSANHATLITSANFSWEENSSKPTLRNVNLEIRPGDKVA 658
Query: 661 ICGEVGSGKSTLLAAILGEVPHTQGTI 687
ICGEVGSGKSTLLA+ILGEVP+T GTI
Sbjct: 659 ICGEVGSGKSTLLASILGEVPNTVGTI 685
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143690|emb|CBI22551.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1002 bits (2591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/558 (85%), Positives = 514/558 (92%)
Query: 675 AILGEVPHTQGTILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGI 734
A L + G I QNSW+AANV+NPN+STL+LIVVYLLIG STLFL+SR+L V LG+
Sbjct: 838 AALSHILFVAGQISQNSWMAANVDNPNISTLQLIVVYLLIGATSTLFLLSRALFVVALGL 897
Query: 735 RSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAY 794
+SSKSLF+QLLNSLFRAPMSFYDSTPLGR+LSR+S+DLSIVDLDVPFS +FA GATTNAY
Sbjct: 898 QSSKSLFTQLLNSLFRAPMSFYDSTPLGRILSRISNDLSIVDLDVPFSFVFAFGATTNAY 957
Query: 795 SNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGA 854
SNLGVLAVVTWQVLFVSIP+I++AIRLQRYYFA+AKELMR+NGTTKSLVANHLAESIAGA
Sbjct: 958 SNLGVLAVVTWQVLFVSIPMIYVAIRLQRYYFASAKELMRINGTTKSLVANHLAESIAGA 1017
Query: 855 MTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLP 914
MTIRAFEEE+RFF KN+D IDTNASPFF +FAANEWLIQRLE LSA V+SS+A CM+LLP
Sbjct: 1018 MTIRAFEEEERFFVKNMDFIDTNASPFFHSFAANEWLIQRLEALSAMVLSSSALCMILLP 1077
Query: 915 PGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDN 974
PGTFT GFIGMA+SYGLSLN SLV SIQNQC LANYIISVERLNQYMH+PSEAPEV+E +
Sbjct: 1078 PGTFTAGFIGMAMSYGLSLNVSLVFSIQNQCILANYIISVERLNQYMHIPSEAPEVIEGS 1137
Query: 975 RPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALF 1034
RPPPNWP VG+VDI DLQIRYRPD+PLVL+GI+CTFEGGHKIGIVGRTGSGKTTLIGALF
Sbjct: 1138 RPPPNWPAVGRVDIHDLQIRYRPDTPLVLRGINCTFEGGHKIGIVGRTGSGKTTLIGALF 1197
Query: 1035 RLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWE 1094
RLVEPAGGKI+VDGIDIS +GLHDLRS FGIIPQDPTLFNG VRYNLDPLSQHTD EIWE
Sbjct: 1198 RLVEPAGGKIIVDGIDISTIGLHDLRSHFGIIPQDPTLFNGAVRYNLDPLSQHTDHEIWE 1257
Query: 1095 VLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
VL KC L EAV+EKE GL S+V E GSNWSMGQRQLFCLGRALLRRSRILVLDEATASID
Sbjct: 1258 VLGKCQLQEAVQEKEEGLGSIVAEGGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1317
Query: 1155 NATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSL 1214
NATD+ILQKTIR EFADCTVITVAHRIPTVMDCTMVLAISDGKL EYDEP KLMKREGSL
Sbjct: 1318 NATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKLVEYDEPAKLMKREGSL 1377
Query: 1215 FGQLVREYWSHLHSAESH 1232
FGQLVREYWSH HSAESH
Sbjct: 1378 FGQLVREYWSHFHSAESH 1395
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116838|ref|XP_002331826.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222875064|gb|EEF12195.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1001 bits (2587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/547 (87%), Positives = 514/547 (93%)
Query: 685 GTILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQL 744
G I QNSW+AANV++P+VSTLRLI VYL IG STLFL+ RS+S VVLG++SSKSLFSQL
Sbjct: 877 GQITQNSWMAANVDDPHVSTLRLITVYLCIGVTSTLFLLCRSISIVVLGLQSSKSLFSQL 936
Query: 745 LNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVT 804
LNSLFRAPMSFYDSTPLGR+LSRV+SDLSIVDLDVPF+LIFAVGATTNAYSNLGVLAVVT
Sbjct: 937 LNSLFRAPMSFYDSTPLGRILSRVTSDLSIVDLDVPFTLIFAVGATTNAYSNLGVLAVVT 996
Query: 805 WQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED 864
WQVLFVSIP+++LAIRLQ YYFA+AKELMR+NGTTKSLV+NHLAESIAGAMTIRAFEEE+
Sbjct: 997 WQVLFVSIPMVYLAIRLQAYYFASAKELMRINGTTKSLVSNHLAESIAGAMTIRAFEEEE 1056
Query: 865 RFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIG 924
RFFAK L+LID NASPFF +FAANEWLIQRLE SATV++SAA CMVLLPPGTF GFIG
Sbjct: 1057 RFFAKTLNLIDINASPFFHSFAANEWLIQRLEIFSATVLASAALCMVLLPPGTFNSGFIG 1116
Query: 925 MALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVG 984
MALSYGLSLN SLV SIQNQCTLANYIISVERLNQYMH+PSEAPEV++DNRPP NWP G
Sbjct: 1117 MALSYGLSLNMSLVFSIQNQCTLANYIISVERLNQYMHIPSEAPEVIKDNRPPSNWPEKG 1176
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
KVDICDLQIRYRP++PLVL+GISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI
Sbjct: 1177 KVDICDLQIRYRPNAPLVLRGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1236
Query: 1045 LVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEA 1104
+VD IDISK+GLHDLRSR GIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVL KC L EA
Sbjct: 1237 IVDEIDISKIGLHDLRSRLGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLGKCQLREA 1296
Query: 1105 VREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKT 1164
V+EKE GLDSLVVEDG NWSMGQRQLFCLGRALLRRSR+LVLDEATASIDNATD++LQKT
Sbjct: 1297 VQEKEQGLDSLVVEDGLNWSMGQRQLFCLGRALLRRSRVLVLDEATASIDNATDLVLQKT 1356
Query: 1165 IRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWS 1224
IR EF+DCTVITVAHRIPTVMDCTMVL+ISDGKL EYDEP KLMK EGSLFGQLV+EYWS
Sbjct: 1357 IRTEFSDCTVITVAHRIPTVMDCTMVLSISDGKLVEYDEPEKLMKTEGSLFGQLVKEYWS 1416
Query: 1225 HLHSAES 1231
HLH+AES
Sbjct: 1417 HLHAAES 1423
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535814|ref|XP_003536438.1| PREDICTED: ABC transporter C family member 10-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 987 bits (2552), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/711 (68%), Positives = 567/711 (79%), Gaps = 13/711 (1%)
Query: 1 MGDLWRMFCGESGCSDIGGEPCDNAFLLLSDPNSCINHALIICFDVLLLAMLLFNMIQKS 60
M W +FCGESGCS+ G PC F LL DP++C+NH L CFDVLLL ML MIQKS
Sbjct: 1 MAGFWSVFCGESGCSEAGRMPCSYDFRLLIDPSTCVNHLLNSCFDVLLLIMLACIMIQKS 60
Query: 61 SSKSLYIPVRFQRFTTLQKVAAVVNSCLGIAYLCLGTWILEEKLRKTHTALPLNWWLLVL 120
S K + QR++ Q V+A+ N LG+ LC G W+LEEKLRK TALPLNWWLL +
Sbjct: 61 SLKPSRGLTQVQRYSYFQLVSAIANGALGLTLLCFGIWVLEEKLRKNQTALPLNWWLLEI 120
Query: 121 FQGVTWLLVSLIVSLRGNHLPRAPMRLLSVLSFLFAGTVCVLSIFAAILSKDVTIKTAVD 180
F G+TWLLVSL ++L+ LP+A R SVL FL + C S+F AI S+++++K + D
Sbjct: 121 FHGLTWLLVSLTITLKLKQLPKAWSRPFSVLIFLVSDFFCASSVFYAISSRELSLKISSD 180
Query: 181 VLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKDHSAGHITGFAAAGF 240
+LSF GAILLLLC YK KH +TD +I EN LYAPLNGE+N K+ S ++T FA GF
Sbjct: 181 ILSFLGAILLLLCTYKESKHRDTDSEIDEN-LYAPLNGESN---KNDSIRYVTPFAKTGF 236
Query: 241 FSRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSV 300
F R+TFWWLNPLMK G+EKTL DEDIP LR+ ++AESCY FLDQLN+QK + S QPSV
Sbjct: 237 FGRMTFWWLNPLMKMGKEKTLHDEDIPRLREEDRAESCYLLFLDQLNRQKLNDQSWQPSV 296
Query: 301 LRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVA 360
LRTII+C+W++I +SGFFALLKV+ LS+GPLLLN+FILV EG FKYEG+VLAI+LF
Sbjct: 297 LRTIILCHWKEILISGFFALLKVVALSSGPLLLNSFILVAEGNESFKYEGFVLAISLFFT 356
Query: 361 KILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYR 420
K +ESLSQRQWYFR RLIGLKVRSLLTAAIY+KQLRLSN+ARLMHS GEIMNYVTVDAYR
Sbjct: 357 KNIESLSQRQWYFRCRLIGLKVRSLLTAAIYRKQLRLSNSARLMHSSGEIMNYVTVDAYR 416
Query: 421 IGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTK 480
IGEFP+WFHQ WTTS QLCI+L+ILF AVG ATIA+LVVI+ITVLCN PLAKLQHKFQ+K
Sbjct: 417 IGEFPYWFHQTWTTSFQLCISLVILFRAVGWATIASLVVIVITVLCNTPLAKLQHKFQSK 476
Query: 481 LMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLF 540
LMV QD+RLKACSEALVNMKVLKLYAWET+F+++IE LRN E KWLSAVQLRKAYNTFLF
Sbjct: 477 LMVTQDDRLKACSEALVNMKVLKLYAWETNFRSSIERLRNEELKWLSAVQLRKAYNTFLF 536
Query: 541 WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSR 600
WSSPVLVS A+FGACYFLNVPL+A+NVFTFVATLRLVQDPIR IPDVIGV IQA VAF+R
Sbjct: 537 WSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFAR 596
Query: 601 IVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVA 660
IV FLEAPELQS+NI Q+ EN I IKSA FSWE++ SKPT+RNI+LEVRPGQKVA
Sbjct: 597 IVKFLEAPELQSVNITQRCLNENKRGSILIKSADFSWEDNVSKPTLRNINLEVRPGQKVA 656
Query: 661 ICGEVGSGKSTLLAAILGEVPHTQGT---------ILQNSWLAANVENPNV 702
ICGEVGSGKSTLLAAIL EV +TQGT + Q +W+ N+
Sbjct: 657 ICGEVGSGKSTLLAAILREVLNTQGTTEVYGKFAYVSQTAWIQTGTIKENI 707
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357443747|ref|XP_003592151.1| Multidrug resistance protein ABC transporter family [Medicago truncatula] gi|355481199|gb|AES62402.1| Multidrug resistance protein ABC transporter family [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 965 bits (2495), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/564 (81%), Positives = 506/564 (89%), Gaps = 16/564 (2%)
Query: 685 GTILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQL 744
G ILQNSW+AANV+NP V+TLRLI+VYL IG ST+FL+ RSL +V LG++SSKSLF QL
Sbjct: 953 GQILQNSWMAANVDNPKVTTLRLILVYLFIGVTSTIFLLMRSLFTVALGLQSSKSLFLQL 1012
Query: 745 LNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVT 804
LNSLFRAPMSFYDSTPLGR+LSRVSSDLSIVDLDVPF L+FAVGATTN Y+NL VLAVVT
Sbjct: 1013 LNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLLFAVGATTNCYANLTVLAVVT 1072
Query: 805 WQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED 864
WQVLFVSIP+I+ A+RLQ YYFATAKELMR+NGTTKS VANHLAES+AGA+TIRAFE+E
Sbjct: 1073 WQVLFVSIPMIYFALRLQGYYFATAKELMRMNGTTKSFVANHLAESVAGAVTIRAFEQEG 1132
Query: 865 RFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTP---- 920
RFF KNL LID NA+PFF +FAANEWLIQRLET+SA V++SAA CMV+LPPGTF+
Sbjct: 1133 RFFVKNLGLIDINATPFFHSFAANEWLIQRLETVSAVVLASAALCMVILPPGTFSSAMSY 1192
Query: 921 ------------GFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAP 968
GFIGMALSYGLSLN+SLV SIQNQC +ANYIISVERLNQYMHVPSEAP
Sbjct: 1193 ESIIISTYDVISGFIGMALSYGLSLNASLVFSIQNQCNIANYIISVERLNQYMHVPSEAP 1252
Query: 969 EVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTT 1028
E +E NRPP NWPVVG+V+I +LQIRYRPD+PLVL+GI+CTFEGGHKIGIVGRTGSGKTT
Sbjct: 1253 ERIEGNRPPVNWPVVGRVEIKELQIRYRPDAPLVLRGITCTFEGGHKIGIVGRTGSGKTT 1312
Query: 1029 LIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHT 1088
LIGALFRLVEPAGGKI+VDGIDI +GLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQH+
Sbjct: 1313 LIGALFRLVEPAGGKIIVDGIDIGSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHS 1372
Query: 1089 DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDE 1148
DQEIWEVL KC L EAV+EKE GLDS VVEDG+NWSMGQRQLFCLGRALLRRSR+LVLDE
Sbjct: 1373 DQEIWEVLGKCQLQEAVQEKEGGLDSSVVEDGANWSMGQRQLFCLGRALLRRSRVLVLDE 1432
Query: 1149 ATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLM 1208
ATASIDNATD+ILQKTIR EFADCTVITVAHRIPTVMDCT VL+ISDGKL EYDEPM LM
Sbjct: 1433 ATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLSISDGKLVEYDEPMNLM 1492
Query: 1209 KREGSLFGQLVREYWSHLHSAESH 1232
K+EGSLFG+LV+EYWSH SAESH
Sbjct: 1493 KKEGSLFGKLVKEYWSHFQSAESH 1516
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120568|ref|XP_002318362.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222859035|gb|EEE96582.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/548 (85%), Positives = 511/548 (93%)
Query: 675 AILGEVPHTQGTILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGI 734
A G + G I QNSW+AANV++P+VSTLRLIV+YL IG +S LFL+ RS+ +VVLG+
Sbjct: 693 ASFGHLLFVTGQISQNSWMAANVDDPHVSTLRLIVIYLSIGIISMLFLLCRSIFTVVLGL 752
Query: 735 RSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAY 794
+SSKSLFSQLL SLFRAPMSFYDSTPLGR+LSRV+SDLSIVDLDVPFSLIFAVGATTNAY
Sbjct: 753 QSSKSLFSQLLLSLFRAPMSFYDSTPLGRILSRVASDLSIVDLDVPFSLIFAVGATTNAY 812
Query: 795 SNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGA 854
SNLGVLAVVTWQVLFVSIP+++LAIRLQRYYFA+AKELMR+NGTTKSLVANHLAES+AGA
Sbjct: 813 SNLGVLAVVTWQVLFVSIPMVYLAIRLQRYYFASAKELMRINGTTKSLVANHLAESVAGA 872
Query: 855 MTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLP 914
+TIRAFE E+RFFAKNL LID NASPFF +FAANEWLIQRLET A +++SAA C+VLLP
Sbjct: 873 LTIRAFEGEERFFAKNLHLIDINASPFFHSFAANEWLIQRLETFCAAILASAALCVVLLP 932
Query: 915 PGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDN 974
PGTF+ GFIGMALSYGLSLN SLVMSIQNQC +ANYIISVERLNQYMH+PSEAPEVVEDN
Sbjct: 933 PGTFSSGFIGMALSYGLSLNMSLVMSIQNQCMVANYIISVERLNQYMHIPSEAPEVVEDN 992
Query: 975 RPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALF 1034
RPP NWP VGKVDICDLQIRYRPD+PLVL+GISCTFEGGHKIGIVGRTGSGKTTLIGALF
Sbjct: 993 RPPSNWPAVGKVDICDLQIRYRPDTPLVLQGISCTFEGGHKIGIVGRTGSGKTTLIGALF 1052
Query: 1035 RLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWE 1094
RLVEPAGGKI+VDGIDISK+GLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS+HTDQEIWE
Sbjct: 1053 RLVEPAGGKIIVDGIDISKIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSKHTDQEIWE 1112
Query: 1095 VLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
VL KC L EAV+EK+ GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR+LVLDEATASID
Sbjct: 1113 VLGKCQLQEAVQEKKQGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRVLVLDEATASID 1172
Query: 1155 NATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSL 1214
NATD+ILQKTIR EF+DCTVITVAHRIPTVMDC+MVLAISDGKL EYDEP LMK EGSL
Sbjct: 1173 NATDLILQKTIRTEFSDCTVITVAHRIPTVMDCSMVLAISDGKLVEYDEPGNLMKTEGSL 1232
Query: 1215 FGQLVREY 1222
FGQLV+EY
Sbjct: 1233 FGQLVKEY 1240
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534063|ref|XP_003535577.1| PREDICTED: ABC transporter C family member 10-like, partial [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 956 bits (2472), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/548 (82%), Positives = 495/548 (90%)
Query: 685 GTILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQL 744
G I QN W+A+NV+NP VSTL+LI VYLLIGF+S FL RSL V + IRSSKSLF QL
Sbjct: 962 GQIFQNLWMASNVDNPYVSTLQLIFVYLLIGFISACFLFIRSLVVVSMSIRSSKSLFLQL 1021
Query: 745 LNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVT 804
LNSLFRAPMSFYDSTPLGR+LSRVSSDLSIVDLDVPF LIFAVGATT YSNL V+A +T
Sbjct: 1022 LNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFAVGATTTCYSNLAVIAAIT 1081
Query: 805 WQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED 864
WQVLF+SIP++++A RLQRYY+ATAKELMR+NGTTKS VANHLAESIAG TIRAFEEED
Sbjct: 1082 WQVLFISIPMLYIAFRLQRYYYATAKELMRMNGTTKSFVANHLAESIAGVETIRAFEEED 1141
Query: 865 RFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIG 924
RFFAKNLDLID NASP+F T+AANEWL+ RLET+SA V +SAA CMV+LPPGTFT GFIG
Sbjct: 1142 RFFAKNLDLIDVNASPYFHTYAANEWLMLRLETISAVVFASAALCMVVLPPGTFTSGFIG 1201
Query: 925 MALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVG 984
MALSYGLSLNSSLV SIQNQCTLAN IISVERLNQYMH+PSEAPEV+E NRPP NWP G
Sbjct: 1202 MALSYGLSLNSSLVFSIQNQCTLANQIISVERLNQYMHIPSEAPEVIEGNRPPVNWPAEG 1261
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
KV++ DL+IRYRPD+PLVL+GI+CTFEGGHKIG+VGRTGSGK+TLIGALFRLVEPAGGKI
Sbjct: 1262 KVELHDLEIRYRPDAPLVLRGITCTFEGGHKIGVVGRTGSGKSTLIGALFRLVEPAGGKI 1321
Query: 1045 LVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEA 1104
+VDGIDI +GLHDLRSRFGIIPQDPTLFNGTVRYN+DPLSQH+D+EIWEVL KC L E
Sbjct: 1322 IVDGIDICSIGLHDLRSRFGIIPQDPTLFNGTVRYNMDPLSQHSDKEIWEVLRKCQLREV 1381
Query: 1105 VREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKT 1164
V EKE GLDS VVE G+NWSMGQRQLFCLGR+LLRRSRILVLDEATASIDNATD+ILQKT
Sbjct: 1382 VEEKEEGLDSSVVEAGANWSMGQRQLFCLGRSLLRRSRILVLDEATASIDNATDLILQKT 1441
Query: 1165 IRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWS 1224
IR EFADCTVITVAHRIPTVMDCT VLAI +G+L EYDEPM LMKREGSLFGQLV+EYWS
Sbjct: 1442 IRTEFADCTVITVAHRIPTVMDCTKVLAIREGELVEYDEPMNLMKREGSLFGQLVKEYWS 1501
Query: 1225 HLHSAESH 1232
HL SAESH
Sbjct: 1502 HLQSAESH 1509
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490553|ref|XP_002266842.2| PREDICTED: ABC transporter C family member 10-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 943 bits (2438), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/711 (63%), Positives = 563/711 (79%), Gaps = 9/711 (1%)
Query: 1 MGDLWRMFCGESGCSDIGGEPCDNAFLLLSDPNSCINHALIICFDVLLLAMLLFNMIQKS 60
MGDLW +FCGES CSD G +F + + P+SCINHA ++CFD+LLLAM + NMIQK+
Sbjct: 1 MGDLWTLFCGESNCSDTGRRTSSFSFAVFASPSSCINHAFLVCFDILLLAMFVSNMIQKA 60
Query: 61 SSKSLYIPVRFQRFTTLQKVAAVVNSCLGIAYLCLGTWILEEKLRKTHTALPLNWWLLVL 120
SK + IP RFQ F+ LQ ++AV N CLG YL LG WILEEKLRKTH+ PL+WW+L+L
Sbjct: 61 LSKRVRIPPRFQGFSPLQIISAVFNGCLGSVYLSLGIWILEEKLRKTHSVFPLHWWILLL 120
Query: 121 FQGVTWLLVSLIVSLRGNHLPRAPMRLLSVLSFLFAGTVCVLSIFAAILSKDVTIKTAVD 180
F G TWL+++LIVSL G HL +AP R+LS+ +FL AGT+CV S+ AI++K+V++KT +D
Sbjct: 121 FHGFTWLILALIVSLWGRHLSKAPFRVLSIFAFLLAGTICVFSLSPAIVNKEVSLKTTLD 180
Query: 181 VLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKDHSAGHITGFAAAGF 240
VLSFPGA LL+ C +K +K +E++ + +GLY PL E G + S T FA AGF
Sbjct: 181 VLSFPGASLLIACVFKDYKDDESEETVNGSGLYTPLKEETPGNSEADSGSFATPFATAGF 240
Query: 241 FSRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSV 300
FSR+ FWWLNPLM++G EK L +EDIP LR+ +QA++CY QFL+QL+KQ+Q + S S+
Sbjct: 241 FSRMFFWWLNPLMRKGTEKILEEEDIPKLREVDQAKNCYLQFLEQLHKQQQNQTLSHASI 300
Query: 301 LRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVA 360
LRTII C+W++IF+SGFFALLK L+L GPLLL AF+ V E + F +EG VLA++LF
Sbjct: 301 LRTIISCHWKEIFISGFFALLKTLSLLTGPLLLKAFVEVAEDQKNFTFEGCVLALSLFFG 360
Query: 361 KILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYR 420
K +ESLS+RQWYFRSR+ G++VRS LTA IYKKQLRLSNAA+++HS GEI NYVTVDAYR
Sbjct: 361 KTIESLSERQWYFRSRITGMRVRSTLTAVIYKKQLRLSNAAKMVHSPGEITNYVTVDAYR 420
Query: 421 IGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTK 480
IGEFPFWFHQ WTT +QLC+AL+ILF AVG AT+AA+VVI++TVLCN PLAKLQHK QTK
Sbjct: 421 IGEFPFWFHQTWTTILQLCVALVILFQAVGFATVAAMVVIVLTVLCNVPLAKLQHKLQTK 480
Query: 481 LMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLF 540
M AQ +R+KA SEALVNMKVLKLYAWETHF+N IE LRNVE K LS VQL KAY +F+F
Sbjct: 481 FMAAQAQRVKASSEALVNMKVLKLYAWETHFENVIEALRNVELKCLSRVQLLKAYYSFVF 540
Query: 541 WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSR 600
++SP+L+S ATFGACYFL VPLYASNVFTF+ATLRLVQDP+R IPDVIGV IQA +AFSR
Sbjct: 541 YASPILISGATFGACYFLGVPLYASNVFTFIATLRLVQDPVRFIPDVIGVVIQAKIAFSR 600
Query: 601 IVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVA 660
IV FLEAPEL S N+++K ++E V+H I I SA+FSW+ES S+ T+R+I+LEVRPG+KVA
Sbjct: 601 IVQFLEAPELHSGNVQKKNSMEIVDHSILINSANFSWDESLSELTLRSINLEVRPGEKVA 660
Query: 661 ICGEVGSGKSTLLAAILGEVPHTQGTIL---------QNSWLAANVENPNV 702
ICGEVGSGKSTLLAAILGEVP+TQGTI Q +W+ N+
Sbjct: 661 ICGEVGSGKSTLLAAILGEVPNTQGTIQVRGKIAYVSQTAWIQTGTIQENI 711
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1232 | ||||||
| TAIR|locus:2077750 | 1453 | ABCC10 "ATP-binding cassette C | 0.452 | 0.383 | 0.789 | 0.0 | |
| TAIR|locus:2020235 | 1514 | ABCC5 "ATP-binding cassette C5 | 0.434 | 0.353 | 0.520 | 5.4e-239 | |
| TAIR|locus:2090029 | 1514 | ABCC3 "ATP-binding cassette C3 | 0.448 | 0.364 | 0.502 | 5.1e-234 | |
| TAIR|locus:2090039 | 1466 | ABCC6 "ATP-binding cassette C6 | 0.429 | 0.360 | 0.492 | 1.5e-221 | |
| TAIR|locus:2090049 | 1493 | ABCC7 "ATP-binding cassette C7 | 0.424 | 0.350 | 0.481 | 1.8e-220 | |
| TAIR|locus:2081755 | 1539 | ABCC14 "ATP-binding cassette C | 0.433 | 0.346 | 0.491 | 9.7e-220 | |
| TAIR|locus:2043268 | 1516 | ABCC4 "ATP-binding cassette C4 | 0.436 | 0.354 | 0.489 | 3.1e-212 | |
| UNIPROTKB|F1S8V9 | 1544 | ABCC2 "Uncharacterized protein | 0.443 | 0.353 | 0.396 | 4.1e-172 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.430 | 0.332 | 0.409 | 1.6e-168 | |
| ZFIN|ZDB-GENE-040426-1523 | 1567 | abcc2 "ATP-binding cassette, s | 0.387 | 0.304 | 0.427 | 1.1e-167 |
| TAIR|locus:2077750 ABCC10 "ATP-binding cassette C10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2304 (816.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 440/557 (78%), Positives = 498/557 (89%)
Query: 675 AILGEVPHTQGTILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGI 734
A L +V G ILQNSW+AANV+NP VSTL+LI+VYLLIG S L LM RS+ V++ +
Sbjct: 896 ASLAQVTFAVGQILQNSWMAANVDNPQVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMCM 955
Query: 735 RSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAY 794
+SS SLFSQLLNSLFRAPMSFYDSTPLGR+LSRVSSDLSIVDLDVPF LIF V ++ N
Sbjct: 956 KSSASLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFVVASSVNTG 1015
Query: 795 SNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGA 854
+LGVLA+VTWQVLFVS+P+++LA RLQ+YYF TAKELMR+NGTT+S VANHLAES+AGA
Sbjct: 1016 CSLGVLAIVTWQVLFVSVPMVYLAFRLQKYYFQTAKELMRINGTTRSYVANHLAESVAGA 1075
Query: 855 MTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLP 914
+TIRAF+EE+RFF K+L LIDTNASPFF +FAANEWLIQRLET+SA V++S AFCM+LLP
Sbjct: 1076 ITIRAFDEEERFFKKSLTLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMILLP 1135
Query: 915 PGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDN 974
GTF+ GFIGMALSYGLSLN LV S+QNQC LAN+IISVERLNQY H+ EAPEV+E+
Sbjct: 1136 TGTFSSGFIGMALSYGLSLNMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVIEET 1195
Query: 975 RPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALF 1034
RPP NWPV G+V+I DLQIRYR +SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLI ALF
Sbjct: 1196 RPPVNWPVTGRVEISDLQIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISALF 1255
Query: 1035 RLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWE 1094
RLVEP GGKI+VDG+DISK+G+HDLRSRFGIIPQDPTLFNGTVR+NLDPL QH+D EIWE
Sbjct: 1256 RLVEPVGGKIVVDGVDISKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAEIWE 1315
Query: 1095 VLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
VL KC L E V+EKENGLDSLVVEDGSNWSMGQRQLFCLGRA+LRRSR+LVLDEATASID
Sbjct: 1316 VLGKCQLKEVVQEKENGLDSLVVEDGSNWSMGQRQLFCLGRAVLRRSRVLVLDEATASID 1375
Query: 1155 NATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSL 1214
NATD+ILQKTIR EFADCTVITVAHRIPTVMDCTMVL+ISDG++ EYDEPMKLMK E SL
Sbjct: 1376 NATDLILQKTIRREFADCTVITVAHRIPTVMDCTMVLSISDGRIVEYDEPMKLMKDENSL 1435
Query: 1215 FGQLVREYWSHLHSAES 1231
FG+LV+EYWSH +SA+S
Sbjct: 1436 FGKLVKEYWSHYNSADS 1452
|
|
| TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1426 (507.0 bits), Expect = 5.4e-239, Sum P(2) = 5.4e-239
Identities = 284/546 (52%), Positives = 375/546 (68%)
Query: 687 ILQNSWLA-ANVENPN----VSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLF 741
I N W+A AN + V L++VY + F S++F+ R+ G+ +++ LF
Sbjct: 964 IASNWWMAWANPQTEGDESKVDPTLLLIVYTALAFGSSVFIFVRAALVATFGLAAAQKLF 1023
Query: 742 SQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLA 801
+L S+FRAPMSF+DSTP GR+L+RVS D S+VDLD+PF L T + V+
Sbjct: 1024 LNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLCGIVAVMT 1083
Query: 802 VVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFE 861
VTWQV + +PV +Q+YY A+++EL+R+ KS + + ESIAGA TIR F
Sbjct: 1084 NVTWQVFLLVVPVAVACFWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFG 1143
Query: 862 EEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLL---PPGTF 918
+E RF +NL L+D PFF + AA EWL R+E LS V AFCMVLL P GT
Sbjct: 1144 QEKRFIKRNLYLLDCFVRPFFCSIAAIEWLCLRMELLSTLVF---AFCMVLLVSFPHGTI 1200
Query: 919 TPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPP 978
P G+A++YGL+LN L I + C L N IIS+ER+ QY + EAP ++ED RPP
Sbjct: 1201 DPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQIVGEAPAIIEDFRPPS 1260
Query: 979 NWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE 1038
+WP G +++ D+++RY + P VL G+SC F GG KIGIVGRTGSGK+TLI ALFRL+E
Sbjct: 1261 SWPATGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRLIE 1320
Query: 1039 PAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAK 1098
P GKI +D IDIS++GLHDLRSR GIIPQDPTLF GT+R NLDPL +H+D +IWE L K
Sbjct: 1321 PTAGKITIDNIDISQIGLHDLRSRLGIIPQDPTLFEGTIRANLDPLEEHSDDKIWEALDK 1380
Query: 1099 CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158
LG+ VR K+ LDS V+E+G NWS+GQRQL LGRALL++++ILVLDEATAS+D ATD
Sbjct: 1381 SQLGDVVRGKDLKLDSPVLENGDNWSVGQRQLVSLGRALLKQAKILVLDEATASVDTATD 1440
Query: 1159 MILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218
++QK IR EF DCTV T+AHRIPTV+D +VL +SDG++AE+D P +L++ + S+F +L
Sbjct: 1441 NLIQKIIRTEFEDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPARLLEDKSSMFLKL 1500
Query: 1219 VREYWS 1224
V EY S
Sbjct: 1501 VTEYSS 1506
|
|
| TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1389 (494.0 bits), Expect = 5.1e-234, Sum P(2) = 5.1e-234
Identities = 282/561 (50%), Positives = 382/561 (68%)
Query: 676 ILGEVPHTQGTILQNSWLA------ANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSS 729
+LG+V I N W+A +V+ P V L++VY+ + F S+L ++ R+
Sbjct: 954 LLGQVLFQLLQIGSNYWMAWATPVSEDVQAP-VKLSTLMIVYVALAFGSSLCILLRATLL 1012
Query: 730 VVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGA 789
V G +++ LF ++ + +FR+PMSF+DSTP GR++SR S+D S VDL++P+
Sbjct: 1013 VTAGYKTATELFHKMHHCIFRSPMSFFDSTPSGRIMSRASTDQSAVDLELPYQFGSVAIT 1072
Query: 790 TTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAE 849
+GV++ V+W V V IPV+ +I QRYY A A+EL RL G K+ + H +E
Sbjct: 1073 VIQLIGIIGVMSQVSWLVFLVFIPVVAASIWYQRYYIAAARELSRLVGVCKAPLIQHFSE 1132
Query: 850 SIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSA-TVISSAAF 908
+I+GA TIR+F +E RF + N+ L D + P F T A EWL RL+ LS+ T + S F
Sbjct: 1133 TISGATTIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVF 1192
Query: 909 CMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAP 968
+V +P G P G+A++YGLSLN+ I C L N IISVER+ QY VPSE P
Sbjct: 1193 -LVSIPTGVIDPSLAGLAVTYGLSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPP 1251
Query: 969 EVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTT 1028
V+E NRP +WP G+V+I DLQ+RY P PLVL+GI+CTF+GG + GIVGRTGSGK+T
Sbjct: 1252 LVIESNRPEQSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKST 1311
Query: 1029 LIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHT 1088
LI LFR+VEP+ G+I +DG++I +GLHDLR R IIPQDPT+F GT+R NLDPL ++T
Sbjct: 1312 LIQTLFRIVEPSAGEIRIDGVNILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLDPLEEYT 1371
Query: 1089 DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDE 1148
D +IWE L KC LG+ VR+KE LDS V E+G NWSMGQRQL CLGR LL+RS+ILVLDE
Sbjct: 1372 DDQIWEALDKCQLGDEVRKKEQKLDSSVSENGDNWSMGQRQLVCLGRVLLKRSKILVLDE 1431
Query: 1149 ATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLM 1208
ATAS+D ATD ++QKT+R F+DCTVIT+AHRI +V+D MVL +S+G + EYD P++L+
Sbjct: 1432 ATASVDTATDNLIQKTLREHFSDCTVITIAHRISSVIDSDMVLLLSNGIIEEYDTPVRLL 1491
Query: 1209 KREGSLFGQLVREYWSHLHSA 1229
+ + S F +LV EY S S+
Sbjct: 1492 EDKSSSFSKLVAEYTSRSSSS 1512
|
|
| TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1334 (474.7 bits), Expect = 1.5e-221, Sum P(2) = 1.5e-221
Identities = 261/530 (49%), Positives = 359/530 (67%)
Query: 693 LAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAP 752
++ +VE P VS LI+VY+L+ S+ ++ R+L + G + + LF+Q+ +FRA
Sbjct: 927 VSKDVEPP-VSGFTLILVYVLLAVASSFCILIRALLVAMTGFKMATELFTQMHLRIFRAS 985
Query: 753 MSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSI 812
MSF+D+TP+GR+L+R S+D S+ DL +P + A N +GV+ V WQVL V I
Sbjct: 986 MSFFDATPMGRILNRASTDQSVADLRLPGQFAYVAIAAINILGIIGVIVQVAWQVLIVFI 1045
Query: 813 PVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLD 872
PV+ ++YY + A+EL RL G ++S V +H +E+++G TIR+F++E RF +
Sbjct: 1046 PVVAACAWYRQYYISAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMR 1105
Query: 873 LIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLS 932
L D + F + A EWL RLE LS +S+ +V P G P G+A++Y L+
Sbjct: 1106 LSDCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAGLAITYALN 1165
Query: 933 LNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQ 992
LN+ I C L N +ISVER+ QY ++PSE P V+E RP +WP G++ IC+LQ
Sbjct: 1166 LNTLQATLIWTLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICNLQ 1225
Query: 993 IRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS 1052
+RY P P+VL G++CTF GG K GIVGRTG GK+TLI LFR+VEPA G+I +DGI+I
Sbjct: 1226 VRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINIL 1285
Query: 1053 KLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGL 1112
+GLHDLRSR IIPQDPT+F GT+R NLDPL ++TD +IWE L C LG+ VR+KE L
Sbjct: 1286 SIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDDQIWEALDNCQLGDEVRKKELKL 1345
Query: 1113 DSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADC 1172
DS V E+G NWS+GQRQL CLGR LL+RS++LVLDEATASID ATD ++Q+T+R FADC
Sbjct: 1346 DSPVSENGQNWSVGQRQLVCLGRVLLKRSKLLVLDEATASIDTATDNLIQETLRHHFADC 1405
Query: 1173 TVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222
TVIT+AHRI +V+D MVL + G + E+D P +L++ SLF +LV EY
Sbjct: 1406 TVITIAHRISSVIDSDMVLLLDQGLIKEHDSPARLLEDRSSLFSKLVAEY 1455
|
|
| TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1304 (464.1 bits), Expect = 1.8e-220, Sum P(2) = 1.8e-220
Identities = 252/523 (48%), Positives = 353/523 (67%)
Query: 700 PNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDST 759
P VS LI+VY+ + S+ ++ R++ S + G + + LF+Q+ +FRA MSF+D+T
Sbjct: 955 PLVSGSTLILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQMHFRIFRASMSFFDAT 1014
Query: 760 PLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAI 819
P+GR+L+R S+D S VDL +P A N +GV+ V WQVL V IPVI
Sbjct: 1015 PIGRILNRASTDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVAWQVLIVFIPVIAACT 1074
Query: 820 RLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNAS 879
++YY + A+EL RL+G ++S + H +E+++G TIR+F++E RF + L D +
Sbjct: 1075 WYRQYYISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSR 1134
Query: 880 PFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVM 939
F +A EWL RL+ LS + + +V +P G P F G+A++Y L+LNS
Sbjct: 1135 LRFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAGLAVTYALNLNSLQAT 1194
Query: 940 SIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDS 999
I C L N +ISVER+ QY+ +PSE V+E RP +WP G++ IC+LQ+RY P
Sbjct: 1195 LIWTLCDLENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRGEITICNLQVRYGPHL 1254
Query: 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL 1059
P+VL+G++CTF GG K GIVGRTG GK+TLI LFR+VEPA G+I +DGI+I +GLHDL
Sbjct: 1255 PMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILTIGLHDL 1314
Query: 1060 RSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVED 1119
RSR IIPQ+PT+F GTVR NLDPL ++ D +IWE L KC LG+ +R+KE LDS V E+
Sbjct: 1315 RSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQLGDEIRKKELKLDSPVSEN 1374
Query: 1120 GSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAH 1179
G NWS+GQRQL CLGR LL+RS++L+LDEATAS+D ATD ++Q+T+R F+ CTVIT+AH
Sbjct: 1375 GQNWSVGQRQLVCLGRVLLKRSKVLILDEATASVDTATDTLIQETLRQHFSGCTVITIAH 1434
Query: 1180 RIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222
RI +V+D MVL + G + E+D P +L++ + S F +LV EY
Sbjct: 1435 RISSVIDSDMVLLLDQGLIEEHDSPARLLEDKSSSFSKLVAEY 1477
|
|
| TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1360 (483.8 bits), Expect = 9.7e-220, Sum P(2) = 9.7e-220
Identities = 269/547 (49%), Positives = 378/547 (69%)
Query: 684 QGTILQNS-WLAANVENPN-VS--TLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKS 739
Q +++ + WLA N VS I VY++I VS + + R+ LG+++++
Sbjct: 991 QASLMASDYWLAYETSAKNEVSFDATVFIRVYVIIAAVSIVLVCLRAFYVTHLGLKTAQI 1050
Query: 740 LFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGV 799
F Q+LNSL APMSF+D+TP GR+LSR S+D + VD+ +PF +G Y+ L
Sbjct: 1051 FFKQILNSLVHAPMSFFDTTPSGRILSRASTDQTNVDIFIPFM----IGLVATMYTTLLS 1106
Query: 800 LAVVT----WQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAM 855
+ +VT W +F IP+ +L I + YY A+++EL RL+ TK+ V +H +ESIAG M
Sbjct: 1107 IFIVTCQYAWPTVFFIIPLGWLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESIAGVM 1166
Query: 856 TIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPP 915
TIRAF+++ F +N+ ++ N F +NEWL RLE + + V+ +A MV+LP
Sbjct: 1167 TIRAFKKQPMFRQENVKRVNANLRMDFHNNGSNEWLGFRLELIGSWVLCISALFMVMLPS 1226
Query: 916 GTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNR 975
P +G++LSYGLSLN L +I C + N ++SVER+ Q+ +P+EA ++++R
Sbjct: 1227 NIIKPENVGLSLSYGLSLNGVLFWAIYLSCFIENKMVSVERIKQFTDIPAEAKWEIKESR 1286
Query: 976 PPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFR 1035
PPPNWP G + + D+++RYRP++PLVLKG++ +GG KIG+VGRTGSGK+TLI LFR
Sbjct: 1287 PPPNWPYKGNIRLEDVKVRYRPNTPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQVLFR 1346
Query: 1036 LVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEV 1095
LVEP+GGKI++DGIDI LGLHDLRSRFGIIPQ+P LF GTVR N+DP +++D+EIW+
Sbjct: 1347 LVEPSGGKIIIDGIDICTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEKYSDEEIWKS 1406
Query: 1096 LAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDN 1155
L +C L + V K LDSLV ++G NWS+GQRQL CLGR +L+RSRIL LDEATAS+D+
Sbjct: 1407 LERCQLKDVVASKPEKLDSLVADNGENWSVGQRQLLCLGRVMLKRSRILFLDEATASVDS 1466
Query: 1156 ATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLF 1215
TD ++QK IR +F+DCT+I++AHRIPTVMDC VL I GK EYD P++L++R+ SLF
Sbjct: 1467 QTDAMIQKIIREDFSDCTIISIAHRIPTVMDCDRVLVIDAGKAKEYDSPVRLLERQ-SLF 1525
Query: 1216 GQLVREY 1222
LV+EY
Sbjct: 1526 AALVQEY 1532
|
|
| TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1342 (477.5 bits), Expect = 3.1e-212, Sum P(2) = 3.1e-212
Identities = 266/543 (48%), Positives = 368/543 (67%)
Query: 684 QGTILQNS-WLAANVENPNVSTLR---LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKS 739
QG+++ + WLA N + I+ Y++I VS + + RS LG+++++
Sbjct: 968 QGSLMASDYWLAYETSAKNAISFDASVFILGYVIIALVSIVLVSIRSYYVTHLGLKTAQI 1027
Query: 740 LFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGV 799
F Q+LNS+ APMSF+D+TP GR+LSR S+D + VD+ +PF L V T S V
Sbjct: 1028 FFRQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDILIPFMLGLVVSMYTTLLSIFIV 1087
Query: 800 LAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRA 859
W F IP+ +L I + YY A+++EL R++ TK+ + +H +ESIAG MTIR+
Sbjct: 1088 TCQYAWPTAFFVIPLGWLNIWYRNYYLASSRELTRMDSITKAPIIHHFSESIAGVMTIRS 1147
Query: 860 FEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFT 919
F +++ F +N+ ++ N F +NEWL RLE + + V+ +A MVLLP
Sbjct: 1148 FRKQELFRQENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNVIR 1207
Query: 920 PGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPN 979
P +G++LSYGLSLNS L +I C + N ++SVER+ Q+ +PSE+ ++ PP N
Sbjct: 1208 PENVGLSLSYGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPSESEWERKETLPPSN 1267
Query: 980 WPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP 1039
WP G V + DL++RYRP++PLVLKGI+ +GG K+G+VGRTGSGK+TLI LFRLVEP
Sbjct: 1268 WPFHGNVHLEDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEP 1327
Query: 1040 AGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKC 1099
+GGKI++DGIDIS LGLHDLRSRFGIIPQ+P LF GTVR N+DP Q++D+EIW+ L +C
Sbjct: 1328 SGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIWKSLERC 1387
Query: 1100 HLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM 1159
L + V K LDSLVV++G NWS+GQRQL CLGR +L+RSR+L LDEATAS+D+ TD
Sbjct: 1388 QLKDVVATKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFLDEATASVDSQTDA 1447
Query: 1160 ILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219
++QK IR +FA CT+I++AHRIPTVMD VL I GK E+D P +L++R SLF LV
Sbjct: 1448 VIQKIIREDFASCTIISIAHRIPTVMDGDRVLVIDAGKAKEFDSPARLLERP-SLFAALV 1506
Query: 1220 REY 1222
+EY
Sbjct: 1507 QEY 1509
|
|
| UNIPROTKB|F1S8V9 ABCC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1093 (389.8 bits), Expect = 4.1e-172, Sum P(5) = 4.1e-172
Identities = 221/557 (39%), Positives = 345/557 (61%)
Query: 668 GKSTLLAAILGEVPHTQGTILQNSWLAA--------NVENPNVSTLRLIV-VYLLIGFVS 718
G +++ +LG + ++ I N WL+A N N S L V V+ +G
Sbjct: 974 GWCSIVFIVLGFMLYSVAFIGSNLWLSAWTGDSKIYNSTNYPTSQRDLRVGVFGALGLAQ 1033
Query: 719 TLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLD 778
+F++ +L SV +S L +QLL+++ RAPMSF+D+TP+GR+++R + D+S +D
Sbjct: 1034 GIFVLIATLCSVYGCTHASSILHTQLLSNILRAPMSFFDTTPIGRIVNRFAGDISTLDDT 1093
Query: 779 VPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGT 838
+P SL + S L ++ + T + + IP+ + + +Q +Y AT+++L RL+
Sbjct: 1094 LPMSLRSWLMCFLGIISTLVMICLATPVFVIIIIPLGIIYVAVQIFYVATSRQLRRLDSV 1153
Query: 839 TKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETL 898
T+S + +H +E+++G IRAFE + RF N IDTN F +N WL RLE +
Sbjct: 1154 TRSPIYSHFSETVSGLPVIRAFEHQQRFLKHNEITIDTNQKCVFSWIISNRWLAVRLEFI 1213
Query: 899 SATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLN 958
++ ++ MV+ T + +G LS L++ +L ++ + I++VER+N
Sbjct: 1214 GNMIVFCSSLMMVIYR-NTLSGDTVGFVLSNALNITQTLNWLVRMTSEIETNIVAVERIN 1272
Query: 959 QYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGI 1018
+Y+HV +EAP V D RPP WP G++ + Q+RYRP+ LVLKGI+C + KIG+
Sbjct: 1273 EYIHVENEAPWVT-DKRPPDGWPSKGEIQFSNYQVRYRPELDLVLKGITCDIKSTEKIGV 1331
Query: 1019 VGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVR 1078
VGRTG+GK++L +LFR++E AGG+I +DG+DI+ +GLHDLR + IIPQDP LF+GT+R
Sbjct: 1332 VGRTGAGKSSLTNSLFRILEAAGGQITIDGVDIASIGLHDLREKLTIIPQDPILFSGTLR 1391
Query: 1079 YNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL 1138
NLDP + ++D+E+W+ L HL V + GL V E G N S+GQRQL CL RALL
Sbjct: 1392 MNLDPFNSYSDEELWKALELAHLKSFVSHLQLGLSYEVTEGGDNLSIGQRQLLCLARALL 1451
Query: 1139 RRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKL 1198
R+S+IL++DEATA++D TD ++Q TI+ EF+ CT IT+AHR+ T+MD V+ + +G +
Sbjct: 1452 RKSKILIMDEATAAVDLETDHLIQTTIQTEFSHCTTITIAHRLHTIMDSDKVMVLDNGNI 1511
Query: 1199 AEYDEPMKLMKREGSLF 1215
+YD P +L+K G +
Sbjct: 1512 VQYDSPEELLKTPGPFY 1528
|
|
| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1076 (383.8 bits), Expect = 1.6e-168, Sum P(2) = 1.6e-168
Identities = 220/537 (40%), Positives = 340/537 (63%)
Query: 685 GTILQNSWLAANVENPNVSTLRL-IVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQ 743
G+I +S ++ VE+ + L I V G ++ FL RS S V I+ SK +
Sbjct: 1048 GSISLSS--SSTVEDNEKAKYYLSIYVAFSCGTIAATFL--RSFSMVFGSIKGSKLFHEK 1103
Query: 744 LLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVV 803
+ ++ +PMSF+D+TP+GR+L+R S D +D + +L + ++ V+A V
Sbjct: 1104 MFKAVILSPMSFFDTTPIGRILNRFSKDQLTIDESIARTLGMFLNTFCQVVGSIIVIAWV 1163
Query: 804 TWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEE 863
+ ++ +PV L +Q+YY +++EL RL G ++S + H +E++AG TIRAF++
Sbjct: 1164 SPFIILAMVPVGALFYFIQKYYLNSSRELTRLEGVSRSPIYAHFSETLAGVTTIRAFKDV 1223
Query: 864 DRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFI 923
RF +N L+D N ++ ++N WL RLE L A ++S A VL G
Sbjct: 1224 ARFVTENERLLDENQKCYYINISSNRWLAIRLEFLGACLVSCAVLYTVLAR-SRIEAGTA 1282
Query: 924 GMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVV 983
G+ ++Y L++ ++ ++ C L N ++S+ER+ +Y +PSEAP + D P +WP
Sbjct: 1283 GLVITYALAITGNMNWMVRMSCDLENSVVSIERIQEYCLLPSEAP-LFNDKSVPMSWPSH 1341
Query: 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043
GK+ +L + YR VL+GI+CT E K+GIVGRTG+GK++L ALFRLVEP G
Sbjct: 1342 GKIVFKNLWLTYREGLDPVLRGINCTIEPKTKVGIVGRTGAGKSSLTQALFRLVEPLRGT 1401
Query: 1044 ILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGE 1103
I +DGIDI++LGL+ LRSR IIPQDP LF G+VRYNLDP Q+ D EIWE + HL +
Sbjct: 1402 IEIDGIDITELGLNPLRSRMAIIPQDPVLFAGSVRYNLDPFDQYDDHEIWEAIENAHLLK 1461
Query: 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQK 1163
A+++ + GLD++V + G N+S+GQRQL +GRALL+++ I+VLDEA++SID A+D ++Q+
Sbjct: 1462 AIKDLDGGLDAMVQDGGDNFSVGQRQLLVIGRALLKKANIIVLDEASSSIDIASDALIQE 1521
Query: 1164 TIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVR 1220
TIR +FADCTV+T+AHR+ T+ D ++ + G+L EYD P +L+K + S++ LV+
Sbjct: 1522 TIRTKFADCTVLTIAHRLGTIADSDKIMVLDKGELIEYDSPSELLKNQDSIYYSLVK 1578
|
|
| ZFIN|ZDB-GENE-040426-1523 abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1045 (372.9 bits), Expect = 1.1e-167, Sum P(3) = 1.1e-167
Identities = 205/479 (42%), Positives = 302/479 (63%)
Query: 734 IRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNA 793
I +S++L + LL ++ + PM F+D+TP GR+++R + D+ VD +P S +
Sbjct: 1068 ISASRTLHTSLLTNILKVPMMFFDTTPSGRIVNRFAKDIFTVDEMIPMSFRSWILCLLGV 1127
Query: 794 YSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAG 853
L V+ + T V +P+ + +QR+Y AT+++L RL+ ++S + +H E+++G
Sbjct: 1128 LGTLFVICLATPIFTAVVVPMAVVYYFVQRFYVATSRQLRRLDSVSRSPIYSHFGETVSG 1187
Query: 854 AMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLL 913
IRA+ +DRF N D ID N + +N WL RLE+L V+ AA V+
Sbjct: 1188 LSVIRAYGHQDRFLKHNEDTIDQNLKSVYPWIVSNRWLAMRLESLGNLVVFFAALFAVI- 1246
Query: 914 PPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVED 973
+ G +G+++SY L++ +L ++ L I++VER+ +Y + +EAP V
Sbjct: 1247 SRDSLNSGLVGLSISYALNVTQTLNWLVRMTSELETNIVAVERVREYAEIQNEAPWVTSV 1306
Query: 974 NRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGAL 1033
RPP +WP G + D ++RYRP+ LVL G++C + KIGIVGRTG+GK++L L
Sbjct: 1307 -RPPDDWPSAGNIRFEDYKVRYRPELELVLHGVTCDIQSTEKIGIVGRTGAGKSSLTNCL 1365
Query: 1034 FRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIW 1093
FR+VE A G+IL+D IDI+ LGLHDLRSR IIPQDP LF+GT+R NLDP +D EIW
Sbjct: 1366 FRIVEAADGRILIDDIDIATLGLHDLRSRLTIIPQDPVLFSGTLRMNLDPFQTFSDAEIW 1425
Query: 1094 EVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI 1153
VL HL E VR GL+ V E G N S+GQRQL CL RALLR+SRIL+LDEATA++
Sbjct: 1426 SVLELAHLKEYVRGLPTGLEHEVSEGGENLSLGQRQLLCLARALLRKSRILILDEATAAV 1485
Query: 1154 DNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREG 1212
D TD ++Q TIR EF+ CTV+T+AHR+ T++D + V+ + GK+ E+D P +L+ + G
Sbjct: 1486 DLETDDLIQSTIRREFSHCTVLTIAHRLNTILDSSRVMVLDSGKIVEFDSPNELLSKPG 1544
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9LYS2 | AB10C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.7885 | 0.4228 | 0.3585 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00006491001 | SubName- Full=Chromosome undetermined scaffold_171, whole genome shotgun sequence; (1480 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00020275001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (227 aa) | • | 0.480 | ||||||||
| GSVIVG00020273001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (227 aa) | • | 0.480 | ||||||||
| GSVIVG00020272001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (227 aa) | • | 0.480 | ||||||||
| GSVIVG00020270001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (179 aa) | • | 0.480 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1232 | |||
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-135 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-131 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-125 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-119 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-95 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 6e-92 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 8e-89 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 8e-80 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-79 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-75 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 5e-63 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 6e-63 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-61 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-60 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-56 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-56 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-55 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 6e-55 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-54 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 9e-52 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-51 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-51 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-48 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-48 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-46 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-46 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 5e-46 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 7e-46 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-43 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-41 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-40 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-40 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-39 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-39 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-38 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-36 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-36 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-35 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-34 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-34 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-33 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-32 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-32 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-29 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-29 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 6e-29 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-29 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-28 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-28 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-28 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-27 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-26 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-26 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-26 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-25 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-25 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-24 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 6e-24 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 9e-24 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-23 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-23 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-23 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 8e-23 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-22 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-22 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-22 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-21 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-21 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-21 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-21 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-21 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-20 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-20 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-20 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-20 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-20 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-20 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-19 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-19 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-19 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-18 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-18 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-18 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-18 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-18 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-18 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 9e-18 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-17 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-17 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-17 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 9e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-16 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-16 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-16 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 9e-16 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-15 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-15 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-15 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-15 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-15 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-15 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-15 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-15 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-15 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 9e-15 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-14 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-14 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-14 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-14 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-14 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-14 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-14 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-14 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-14 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-14 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 8e-14 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-13 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-13 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 5e-13 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-13 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-13 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-13 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 6e-13 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 7e-13 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 8e-13 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 9e-13 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-12 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-12 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-12 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-12 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-12 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-12 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-12 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-12 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-12 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-12 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-12 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-12 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-12 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-12 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-12 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-12 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-12 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-12 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-12 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 7e-12 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 8e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-11 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-11 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-11 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-11 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-11 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-11 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-11 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-11 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 4e-11 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-11 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-11 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-11 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-11 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 6e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 7e-11 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-11 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 9e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-11 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-10 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-10 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-10 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-10 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-10 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-10 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-10 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-10 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-10 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-10 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-10 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-10 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-10 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 6e-10 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 6e-10 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 7e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 8e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 8e-10 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 9e-10 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-09 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-09 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-09 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-09 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-09 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-09 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-09 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-09 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 5e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-09 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 6e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 6e-09 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 7e-09 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 8e-09 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 9e-09 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 9e-09 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 9e-09 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-08 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-08 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-08 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-08 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-08 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-08 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-08 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-08 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-08 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-08 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-08 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-08 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-08 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-08 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 4e-08 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 4e-08 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-08 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 5e-08 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-08 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-08 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 5e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 6e-08 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 6e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 6e-08 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-08 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-08 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 7e-08 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 7e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-08 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 8e-08 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 8e-08 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 8e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-08 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-08 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-07 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-07 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-07 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-07 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-07 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 1e-07 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-07 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-07 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-07 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-07 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-07 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-07 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-07 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-07 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-07 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-07 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-07 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-07 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-07 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-07 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-07 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-07 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-07 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 7e-07 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 7e-07 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 8e-07 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 9e-07 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-06 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-06 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-06 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-06 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-06 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-06 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-06 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-06 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-06 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 2e-06 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-06 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-06 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-06 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-06 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-06 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 5e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-06 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 5e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 6e-06 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 7e-06 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 8e-06 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 9e-06 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 9e-06 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 9e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 9e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 9e-06 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-05 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-05 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-05 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-05 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-05 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-05 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-05 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-05 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-05 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-05 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-05 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-05 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-05 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-05 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-05 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-05 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 5e-05 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-05 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-05 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 5e-05 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-05 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 7e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 7e-05 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-05 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 9e-05 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 9e-05 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-04 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-04 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-04 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-04 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-04 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-04 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-04 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-04 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-04 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-04 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-04 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-04 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-04 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-04 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-04 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-04 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-04 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 4e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-04 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 4e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-04 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-04 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-04 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-04 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 5e-04 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 5e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 5e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 6e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 7e-04 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 7e-04 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 7e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 8e-04 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 8e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.001 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 0.001 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 0.001 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 0.001 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 0.001 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 0.001 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 0.001 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 0.001 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 0.001 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 0.001 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 0.001 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.001 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 0.001 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 0.002 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 0.002 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.002 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.002 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 0.002 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.002 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.002 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.002 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 0.002 | |
| cd01130 | 186 | cd01130, VirB11-like_ATPase, Type IV secretory pat | 0.002 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 0.003 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 0.003 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 0.003 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 0.003 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 0.003 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 0.004 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.004 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.004 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.004 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 449 bits (1158), Expect = e-135
Identities = 217/520 (41%), Positives = 322/520 (61%), Gaps = 10/520 (1%)
Query: 708 IVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSR 767
++Y L+ F L + S ++ + ++K L +L S+ RAPMSF+ + PLGR+++R
Sbjct: 956 NLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINR 1015
Query: 768 VSSDLSIVDLDV-PFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYF 826
+ DL +D +V F +F +G S ++ +V+ L+ +P++ L YY
Sbjct: 1016 FAKDLGDIDRNVAVFVNMF-LGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQ 1074
Query: 827 ATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFA 886
+TA+E+ RL+ T+S V E++ G TIRA++ DR N +D N +
Sbjct: 1075 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMS 1134
Query: 887 ANEWLIQRLETLSATVISSAAFCMVLL-----PPGTFTPGFIGMALSYGLSLNSSLVMSI 941
+N WL RLETL +I A V+ F +G+ LSY L++ +SL+ ++
Sbjct: 1135 SNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFAST-MGLLLSYALNI-TSLLTAV 1192
Query: 942 QNQCTLA-NYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSP 1000
+LA N + +VER+ Y+ +PSEAP V+E+NRPPP WP G + D+ +RYRP+ P
Sbjct: 1193 LRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELP 1252
Query: 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLR 1060
VL G+S K+GIVGRTG+GK++++ ALFR+VE G+IL+DG DISK GL DLR
Sbjct: 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLR 1312
Query: 1061 SRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120
GIIPQ P LF+GTVR+NLDP ++H D ++WE L + HL + +R GLD+ V E G
Sbjct: 1313 KVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAG 1372
Query: 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHR 1180
N+S+GQRQL L RALLRRS+ILVLDEATA++D TD ++QKTIR EF CT++ +AHR
Sbjct: 1373 ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 1432
Query: 1181 IPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVR 1220
+ T++DC +L + G++ E+D P L+ EGS F ++V+
Sbjct: 1433 LNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQ 1472
|
Length = 1622 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 437 bits (1126), Expect = e-131
Identities = 211/555 (38%), Positives = 333/555 (60%), Gaps = 8/555 (1%)
Query: 668 GKSTLLAAILGEVPHTQGTILQNSWLAANVENP------NVSTLRLIVVYLLIGFVSTLF 721
G +I V + + N WL+ ++P N ++LRL VY +G +
Sbjct: 963 GLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRL-SVYGALGILQGFA 1021
Query: 722 LMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPF 781
+ S++ + GI++S+ L LL++ R+PMSF++ TP G +++R S +L VD +P
Sbjct: 1022 VFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPP 1081
Query: 782 SLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKS 841
+ +G+ N L V+ + T + P+ L +QR+Y A++++L RL ++S
Sbjct: 1082 VIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRS 1141
Query: 842 LVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSAT 901
V +H E++ G IRAFEE++RF ++ +D N ++ + AN WL RLE +
Sbjct: 1142 PVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNC 1201
Query: 902 VISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYM 961
++ AA V+ + + G +G+++SY L + L ++ + I++VERL +Y
Sbjct: 1202 IVLFAALFAVI-SRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYS 1260
Query: 962 HVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGR 1021
EAP +++ PP WP G+V+ + +RYR D LVL+ I+ T GG K+GIVGR
Sbjct: 1261 ETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGR 1320
Query: 1022 TGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL 1081
TG+GK++L LFR+ E A G+I++DG++I+K+GLHDLR + IIPQDP LF+G++R NL
Sbjct: 1321 TGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL 1380
Query: 1082 DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141
DP SQ++D+E+W L HL V + LD E G N S+GQRQL CL RALLR++
Sbjct: 1381 DPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKT 1440
Query: 1142 RILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEY 1201
+ILVLDEATA++D TD ++Q TIR +F DCTV+T+AHR+ T+MD T V+ + G++AE+
Sbjct: 1441 KILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEF 1500
Query: 1202 DEPMKLMKREGSLFG 1216
P L+++ G +
Sbjct: 1501 GAPSNLLQQRGIFYS 1515
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 383 bits (986), Expect = e-125
Identities = 125/221 (56%), Positives = 168/221 (76%)
Query: 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043
G ++ ++ +RYRP+ P VLK IS + + G K+GIVGRTGSGK++L+ ALFRLVE + G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1044 ILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGE 1103
IL+DG+DISK+GLHDLRSR IIPQDP LF+GT+R NLDP +++D+E+W+ L + L E
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQK 1163
V GLD++V E G N S+GQRQL CL RALLR+S+ILVLDEATAS+D TD ++QK
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1164 TIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEP 1204
TIR F DCTV+T+AHR+ T++D +L + G++ E+D P
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 405 bits (1042), Expect = e-119
Identities = 204/541 (37%), Positives = 317/541 (58%), Gaps = 7/541 (1%)
Query: 687 ILQNSWLAANVENPNVSTLR---LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQ 743
+ ++WL+ + + IVVY L+GF + S + + ++K L
Sbjct: 929 VSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDA 988
Query: 744 LLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVV 803
+LNS+ RAPM F+ + P GRV++R S D+ +D +V + + S ++ V
Sbjct: 989 MLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTV 1048
Query: 804 TWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEE 863
+ L+ +P++ L YY +T++E+ RL+ T+S + E++ G +IRA++
Sbjct: 1049 STISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAY 1108
Query: 864 DRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVI-SSAAFCMVLLPPGTFTPGF 922
DR N +D N ++N WL RLETL +I +A F ++ GF
Sbjct: 1109 DRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGF 1168
Query: 923 ---IGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPN 979
+G+ LSY L++ + L ++ N + SVER+ Y+ +PSEA ++E+NRP
Sbjct: 1169 ASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSG 1228
Query: 980 WPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP 1039
WP G + D+ +RYRP P VL G+S K+G+VGRTG+GK++++ ALFR+VE
Sbjct: 1229 WPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL 1288
Query: 1040 AGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKC 1099
G+I++D D++K GL DLR IIPQ P LF+GTVR+N+DP S+H D ++WE L +
Sbjct: 1289 EKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERA 1348
Query: 1100 HLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM 1159
H+ + + GLD+ V E G N+S+GQRQL L RALLRRS+ILVLDEATAS+D TD
Sbjct: 1349 HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408
Query: 1160 ILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219
++Q+TIR EF CT++ +AHR+ T++DC +L +S G++ EYD P +L+ R+ S F ++V
Sbjct: 1409 LIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMV 1468
Query: 1220 R 1220
Sbjct: 1469 H 1469
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 336 bits (863), Expect = 2e-95
Identities = 198/550 (36%), Positives = 292/550 (53%), Gaps = 49/550 (8%)
Query: 710 VYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVS 769
VYL I + T + R S R S+++ LL S+ R MSF+D+TPLGR+L+R S
Sbjct: 1003 VYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFS 1062
Query: 770 SDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATA 829
D+ I+D +P S ++ + + S++ V + VL +P +L RL ++Y +
Sbjct: 1063 RDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSAN 1122
Query: 830 KELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANE 889
+E+ R+ KS V L E++ G+ TI A+ + + L +D S + AN
Sbjct: 1123 REIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANR 1182
Query: 890 WLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNS-SLVMSIQNQCTLA 948
WL R+E LS V++ A V+ G + A S + L S SL M++Q TL
Sbjct: 1183 WLGVRVEFLSNIVVTVIALIGVI--------GTMLRATSQEIGLVSLSLTMAMQTTATL- 1233
Query: 949 NYII-----------SVERLNQYMH-VPSEA-PE----------------------VVED 973
N+++ SVERL Y VP E PE V+E
Sbjct: 1234 NWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEP 1293
Query: 974 NRPPPNWP---VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLI 1030
P P G + +Q+RYR PLVL+G+S K+GIVGRTGSGK+TL+
Sbjct: 1294 ASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLL 1353
Query: 1031 GALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQ 1090
R+VE GG+I V+G +I GL +LR +F +IPQDP LF+GTVR N+DP + +
Sbjct: 1354 LTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSA 1413
Query: 1091 EIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRR-SRILVLDEA 1149
E+W L L E V + G+DS V+E GSN+S+GQRQL C+ RALL++ S +++DEA
Sbjct: 1414 EVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEA 1473
Query: 1150 TASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMK 1209
TA+ID A D +Q T+ + F+ TVIT+AHR+ TV ++ + G +AE P +L+
Sbjct: 1474 TANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVM 1533
Query: 1210 REGSLFGQLV 1219
S+F +V
Sbjct: 1534 NRQSIFHSMV 1543
|
Length = 1560 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 307 bits (788), Expect = 6e-92
Identities = 155/522 (29%), Positives = 260/522 (49%), Gaps = 15/522 (2%)
Query: 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRV 764
L L+++ LL+ + + +S LG + L L L R P+SF+D G +
Sbjct: 52 LELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDL 111
Query: 765 LSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRY 824
+SR+++D+ V V L+ + +L +L ++W++ + + ++ L +
Sbjct: 112 ISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSL 171
Query: 825 YFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAF----EEEDRFFAKNLDLIDTNASP 880
+++L R + L ES++G I+AF E RF N +L N
Sbjct: 172 LARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR- 230
Query: 881 FFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMS 940
+ A L+ L +L ++ + +VL G+ T G + + Y L L + ++
Sbjct: 231 ASRLEALLAPLMLLLSSLGTVLVLALGGFLVLS--GSLTVGALAAFILYLLRLLTPILQL 288
Query: 941 IQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSP 1000
+ L + ERL + + E PEV + P P +G ++ ++ Y P
Sbjct: 289 GEVVSLLQRASAAAERLFELL---DEEPEVED--PPDPLKDTIGSIEFENVSFSYPGKKP 343
Query: 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLR 1060
VLK IS + E G K+ IVG +GSGK+TLI L RL +P G+IL+DGIDI + L LR
Sbjct: 344 -VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402
Query: 1061 SRFGIIPQDPTLFNGTVRYNLDP-LSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVED 1119
R GI+ QDP LF+GT+R N+ TD+EI E L + E + +G D++V E
Sbjct: 403 KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGER 462
Query: 1120 GSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAH 1179
G N S GQRQ + RALLR IL+LDEAT+++D T+ ++Q ++ T + +AH
Sbjct: 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAH 522
Query: 1180 RIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221
R+ T+ + ++ + +G++ E +L+ + G L+ +L +
Sbjct: 523 RLSTIKNADRIIVLDNGRIVERGTHEELLAKGG-LYARLYQA 563
|
Length = 567 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 285 bits (730), Expect = 8e-89
Identities = 119/225 (52%), Positives = 154/225 (68%), Gaps = 18/225 (8%)
Query: 980 WPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP 1039
WP G++++ +L +RY PD P VLK +S + G KIGIVGRTG+GK+TLI ALFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1040 AGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKC 1099
GKI +DGIDIS + L DLRS IIPQDPTLF+GT+R NLDP +++D+EI+ L
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-- 118
Query: 1100 HLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM 1159
V E G N S GQRQL CL RALL+R R+LVLDEATASID ATD
Sbjct: 119 ----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 1160 ILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEP 1204
++QKTIR EF + T++T+AHR+ T++D +L + G++ EYD P
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 288 bits (738), Expect = 8e-80
Identities = 169/568 (29%), Positives = 298/568 (52%), Gaps = 36/568 (6%)
Query: 676 ILGEVPHTQGTILQNSWLAANVENPNVSTLRLI-------VVYLLIGFVSTLFLMS--RS 726
++ + P + Q AN +P+V +I + Y+ +G ++ + R
Sbjct: 890 LITDNPSAPNYVDQQH---ANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRG 946
Query: 727 LSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFA 786
L V + SK L Q+L+S+ +APM+ ++ GR+L+R + D++I+D +P +L
Sbjct: 947 LPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDF 1006
Query: 787 VGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANH 846
+ T + V++V+ + +IPV + I L+ Y+ T+++L +L +S + +H
Sbjct: 1007 IQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSH 1066
Query: 847 LAESIAGAMTIRAFEEEDRF---FAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVI 903
L S+ G TIRAF + F F K L+L N +F + W R++ +
Sbjct: 1067 LITSLKGLWTIRAFGRQSYFETLFHKALNLHTAN---WFLYLSTLRWFQMRIDIIFVFFF 1123
Query: 904 SSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHV 963
+ F + G +G+ L+ +++ S+L ++ + + + SV R+ +++ +
Sbjct: 1124 IAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDL 1181
Query: 964 PSEAPE--------------VVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCT 1009
P E P V+E+ WP G++D+ L +Y VL+ +S +
Sbjct: 1182 PQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFS 1241
Query: 1010 FEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQD 1069
EGG ++G++GRTGSGK+TL+ AL RL+ G+I +DG+ + + L R FG+IPQ
Sbjct: 1242 VEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQK 1300
Query: 1070 PTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129
+F+GT R NLDP Q +D+EIW+V + L + + + LD ++V+ G S G +Q
Sbjct: 1301 VFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQ 1360
Query: 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTM 1189
L CL R++L +++IL+LDE +A +D T I++KT++ F++CTVI HR+ +++C
Sbjct: 1361 LMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQ 1420
Query: 1190 VLAISDGKLAEYDEPMKLMKREGSLFGQ 1217
L I + +YD KL+ E SLF Q
Sbjct: 1421 FLVIEGSSVKQYDSIQKLLN-ETSLFKQ 1447
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 261 bits (669), Expect = 1e-79
Identities = 123/237 (51%), Positives = 163/237 (68%)
Query: 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043
G++ I DL +RY + VLK + + G K+GI GRTGSGK++L A FR+V+ GK
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1044 ILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGE 1103
I++DGIDISKL LH LRSR II QDP LF+G++R+NLDP + TD +WE L L
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQK 1163
V+ GLD++V E G N+S+GQRQLFCL RA +R+S IL++DEATASID AT+ ILQK
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1164 TIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVR 1220
+ FAD TV+T+AHR+ T++D +VL +S G L E D P L+ +E +F LVR
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 263 bits (675), Expect = 6e-75
Identities = 146/540 (27%), Positives = 253/540 (46%), Gaps = 36/540 (6%)
Query: 701 NVSTLRLIV-VYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDST 759
+ STL ++ LL L + R+ LG R L + L R P+S+++
Sbjct: 189 SRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKR 248
Query: 760 PLGRVLSRVSSDLSIVD----------LDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLF 809
+G ++SRV I + +D+ F+LIF L V+ + +W++
Sbjct: 249 SVGEIISRVRELEQIREFLTGSILTLIIDLLFALIF-----------LAVMFLYSWKLTL 297
Query: 810 VSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAK 869
+ + I L + + + + R + + L E+I G T++A E RF ++
Sbjct: 298 IVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQ 357
Query: 870 NLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMV-----LLPPGTFTPGFIG 924
+ + + F+T E L L T+ + + ++ ++ L+ G T G +
Sbjct: 358 WDNRLAKQVNIGFKT----EKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLV 413
Query: 925 MALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVG 984
S + Q +++ERL + PE D + G
Sbjct: 414 AFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDIL---DTPPEQEGDKTLIHLPKLQG 470
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
+++ ++ RY PD P VL+ +S G K+ IVGR+GSGK+TL+ L L +P G+I
Sbjct: 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI 530
Query: 1045 LVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQH-TDQEIWEVLAKCHLGE 1103
L+DG+D++ + L LR + G + QDP LF+G++R N+ + TD+EI E E
Sbjct: 531 LLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHE 590
Query: 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQK 1163
+ G D+ V E G+N S GQRQ L RALL + +IL+LDEAT+++D T+ I+ +
Sbjct: 591 FIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQ 650
Query: 1164 TIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223
+ TVI +AHR+ T+ ++ + GK+ E +L+ + G L+ +L ++
Sbjct: 651 NLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGG-LYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 236 bits (602), Expect = 5e-63
Identities = 126/449 (28%), Positives = 241/449 (53%), Gaps = 7/449 (1%)
Query: 238 AGFFSRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQ 297
A FSR+ F W+ PLM+ G K + ++D+ L + +Q E+ +F ++ + +
Sbjct: 232 ASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESR---RPK 288
Query: 298 PSVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITL 357
P +LR + ++ G F + L+ GP++L + +L + + + GYV A +
Sbjct: 289 PWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVIL-SHLLQSMQEGDPAWVGYVYAFLI 347
Query: 358 FVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVD 417
F L + Q++ +G ++RS L AAI+ K LRL++ AR + G++ N +T D
Sbjct: 348 FFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTD 407
Query: 418 AYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKF 477
A + + H +W+ ++ +++++L+ +G+A++ +++ + + + + K
Sbjct: 408 ANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKL 467
Query: 478 QTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNT 537
+ + D+R+ +E L +M +K YAWE F++ I+ +RN E W QL A+N+
Sbjct: 468 TKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNS 527
Query: 538 FLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVA 597
F+ S PV+V+ +FG L L + FT ++ +++ P+ ++P+++ + ANV+
Sbjct: 528 FILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVS 587
Query: 598 FSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQ 657
RI L + E + Q ++ ISIK+ FSW+ +SKPT+ +I+LE+ G
Sbjct: 588 LQRIEELLLSEE---RILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGS 644
Query: 658 KVAICGEVGSGKSTLLAAILGEVPHTQGT 686
VAI G G GK++L++A+LGE+ H + +
Sbjct: 645 LVAIVGGTGEGKTSLISAMLGELSHAETS 673
|
Length = 1495 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 6e-63
Identities = 135/492 (27%), Positives = 241/492 (48%), Gaps = 41/492 (8%)
Query: 236 AAAGFFSRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQ------ 289
++A F SR+TFWW+ + G + L + D+ L K + +E ++ K+
Sbjct: 205 SSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRK 264
Query: 290 ------------KQAEPSSQ--------------------PSVLRTIIICYWRDIFMSGF 317
+ + SSQ PS+ + + + MS
Sbjct: 265 QPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFC 324
Query: 318 FALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRL 377
F + L + GP +L+ I ++GY LFV L++L Q++ +
Sbjct: 325 FKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFV 384
Query: 378 IGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQ 437
G+++++ + A+Y+K L ++N+AR + GEI+N ++VDA R + + + IW+ +Q
Sbjct: 385 SGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQ 444
Query: 438 LCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALV 497
+ +AL L+ +G + +A + V+++ V NA +A +Q M ++D R+K +E L
Sbjct: 445 VILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILN 504
Query: 498 NMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPVLVSTATFGACYF 557
+KVLKLYAWE F + +E +R E K L A TF + +P LV+ TF
Sbjct: 505 GIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVT 564
Query: 558 L--NVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNI 615
+ N L A F +A +++ P+ ++P VI +QA+V+ R+ FL EL+ +I
Sbjct: 565 VDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSI 624
Query: 616 RQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAA 675
++ + I++ +A+F+W PT+ I+ + G VA+ G+VG GKS+LL+A
Sbjct: 625 ERRTIKPGEGNSITVHNATFTWARDLP-PTLNGITFSIPEGALVAVVGQVGCGKSSLLSA 683
Query: 676 ILGEVPHTQGTI 687
+L E+ +G +
Sbjct: 684 LLAEMDKVEGHV 695
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 1e-61
Identities = 83/230 (36%), Positives = 133/230 (57%), Gaps = 2/230 (0%)
Query: 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043
G+++ ++ Y P VLK I+ + + G + IVG TG+GKTTLI L R +P G+
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1044 ILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAK-CHLG 1102
IL+DGIDI + LRS G++ QD LF+GT+ N+ + E AK
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1103 EAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQ 1162
+ + + NG D+++ E+G N S G+RQL + RA+LR +IL+LDEAT++ID T+ ++Q
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 1163 KTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREG 1212
+ + T I +AHR+ T+ + +L + DGK+ E +L+ ++G
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 1e-60
Identities = 139/479 (29%), Positives = 254/479 (53%), Gaps = 19/479 (3%)
Query: 209 ENGLYAPLNGEANGLGKDHSAGHITGFAAAGFFSRLTFWWLNPLMKRGREKTLGDEDIPD 268
++ Y L G + H A FSR+ F W+ PLM+ G ++ L ++D+
Sbjct: 213 DDYEYEELPGGEQICPERH----------ANIFSRIFFGWMTPLMQLGYKRPLTEKDVWK 262
Query: 269 LRKAEQAESCYFQFLDQLNKQKQAEPSSQPSVLRTIIICYWRDIFMSGFFALLKVLTLSA 328
L +Q E+ Y F +++ + +P +LR + ++ GFF + L+
Sbjct: 263 LDTWDQTETLYRSFQKCWDEELK---KPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFV 319
Query: 329 GPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTA 388
GPLLLN +L + + GY+ A ++FV +L L + Q++ +G ++RS L A
Sbjct: 320 GPLLLN-LLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVA 378
Query: 389 AIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHA 448
A+++K LRL++ R + G+I N +T DA + + H +W+ ++ IA+++L+
Sbjct: 379 AVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQ 438
Query: 449 VGLATI-AALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAW 507
+G+A++ +L+++++ + ++K+Q K + + D+R+ +E L M +K YAW
Sbjct: 439 LGVASLIGSLMLVLMFPIQTFIISKMQ-KLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAW 497
Query: 508 ETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPVLVSTATFGACYFLNVPLYASNV 567
E F++ ++ +R+ E W QL A+N+F+ S PVLV+ +FG L L +
Sbjct: 498 ENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARA 557
Query: 568 FTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHV 627
FT ++ +++ P+ ++P++I + ANV+ R+ L A E + +E
Sbjct: 558 FTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERV---LLPNPPLEPGLPA 614
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
ISIK+ FSW+ + +PT+ NI+L+V G VAI G G GK++L++A+LGE+P
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDA 673
|
Length = 1622 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 1e-56
Identities = 73/208 (35%), Positives = 107/208 (51%), Gaps = 41/208 (19%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
++ Y VLK +S T + G K+ IVG +GSGK+TL+ L RL +P G+IL+DG+
Sbjct: 5 NVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGV 64
Query: 1050 DISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKE 1109
D+ L L LR +PQDP LF+GT+R N+ LS
Sbjct: 65 DLRDLDLESLRKNIAYVPQDPFLFSGTIRENI--LSG----------------------- 99
Query: 1110 NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF 1169
GQRQ + RALLR IL+LDEAT+++D T+ ++ + +RA
Sbjct: 100 ----------------GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA 143
Query: 1170 ADCTVITVAHRIPTVMDCTMVLAISDGK 1197
TVI +AHR+ T+ D ++ + DG+
Sbjct: 144 KGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 4e-56
Identities = 149/524 (28%), Positives = 235/524 (44%), Gaps = 34/524 (6%)
Query: 707 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLS 766
L V+ + FVST +L+S + VV IR ++ L P+SF+D P G +LS
Sbjct: 63 LAVLRGICSFVST-YLLSWVSNKVVRDIRV------RMFEKLLGLPVSFFDRQPTGTLLS 115
Query: 767 RVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQ---VLFVSIPVI-FLAIRLQ 822
R++ D V + I V T VL +WQ ++ V +PV+ L R+
Sbjct: 116 RITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVS 175
Query: 823 RYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAF---EEEDRFFAKNLDLIDTNAS 879
+ +KE+ G V E++ G ++ F E R F + A
Sbjct: 176 KRLRRISKEIQNSMGQ----VTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAM 231
Query: 880 PFFQTFAANEWLIQRLETLS-ATVISSAAF--CMVLLPPGTFTPGFIGMALSYGLSLNSS 936
+ + + Q + +L+ A V+ A F L G FT M L S
Sbjct: 232 KMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIR-PLKSL 290
Query: 937 LVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYR 996
++ Q LA + E L + PE R G V+ ++ RY
Sbjct: 291 TNVNAPMQRGLA----AAESLFTLL---DSPPEKDTGTRAIER--ARGDVEFRNVTFRYP 341
Query: 997 PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL 1056
L IS E G + +VGR+GSGK+TL+ + R EP G+IL+DG D++ L
Sbjct: 342 GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL 401
Query: 1057 HDLRSRFGIIPQDPTLFNGTVRYNL--DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDS 1114
LR + ++ QD LFN T+ N+ Q EI LA + + V + GLD+
Sbjct: 402 ASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDT 461
Query: 1115 LVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTV 1174
+ E+G S GQRQ + RALL+ + IL+LDEAT+++DN ++ ++Q + T
Sbjct: 462 PIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTT 521
Query: 1175 ITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218
+ +AHR+ T+ ++ + DG++ E +L+ R G L+ QL
Sbjct: 522 LVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNG-LYAQL 564
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 2e-55
Identities = 91/236 (38%), Positives = 143/236 (60%), Gaps = 2/236 (0%)
Query: 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043
G++ + DL +Y VL+ IS + G ++G++GRTGSGK+TL+ A RL+ G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 1044 ILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGE 1103
I +DG+ + + L R FG+IPQ +F+GT R NLDP + +D+EIW+V + L
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQK 1163
+ + LD ++V+ G S G +QL CL R++L +++IL+LDE +A +D T +++K
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1164 TIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219
T++ FADCTVI HRI +++C L I + K+ +YD KL+ E S F Q +
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN-EKSHFKQAI 234
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 190 bits (486), Expect = 6e-55
Identities = 82/233 (35%), Positives = 130/233 (55%), Gaps = 11/233 (4%)
Query: 995 YRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL 1054
Y P P VLK +S T G K+ IVG +GSGK+T++ LFR + + G IL+DG DI ++
Sbjct: 10 YDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREV 68
Query: 1055 GLHDLRSRFGIIPQDPTLFNGTVRYNL---DPLSQHTDQEIWEVLAKCHLGEAVREKENG 1111
L LR G++PQD LFN T+ YN+ P TD+E+ E + + + +G
Sbjct: 69 TLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP--DATDEEVIEAAKAAQIHDKIMRFPDG 126
Query: 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFAD 1171
D++V E G S G++Q + RA+L+ IL+LDEAT+++D T+ +Q +R
Sbjct: 127 YDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKG 186
Query: 1172 CTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWS 1224
T I +AHR+ T+++ ++ + DG++ E +L+ + G L E W
Sbjct: 187 RTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGG-----LYAEMWK 234
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 4e-54
Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 1/228 (0%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
V+ ++ RY D P VL+ IS G + +VG +GSGK+TL+ + R + G+IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1046 VDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLD-PLSQHTDQEIWEVLAKCHLGEA 1104
+DG D+ L LR + G++ QD LFN TV N+ T +E+ E + E
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 1105 VREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKT 1164
+ E G D+++ E G S GQRQ + RALL+ IL+LDEAT+++D ++ ++Q
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 1165 IRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREG 1212
+ + T +AHR+ T+ + ++ + DGK+ E +L+ + G
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 194 bits (496), Expect = 9e-52
Identities = 132/451 (29%), Positives = 218/451 (48%), Gaps = 62/451 (13%)
Query: 772 LSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVS---IPVIFL-AIRLQRYYFA 827
+++DL PF+L+F L V+A++ +++V IP+I L + LQR
Sbjct: 265 TALIDL--PFALLF-----------LLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSR 311
Query: 828 TAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAA 887
A+E MR ++ L ES++G TI+A E RF + + QT AA
Sbjct: 312 LAEESMRE-SAQRNA---VLVESLSGLETIKALNAEGRFQRR-----------WEQTVAA 356
Query: 888 NEWLIQRLETLSATVISSAAF-------CMVLLPPGTF--TPGFIGMALSYGL---SLNS 935
+ LS + A F +V++ G + + G + M GL + S
Sbjct: 357 LARSGLKSRFLSNLATNFAQFIQQLVSVAIVVV--GVYLISDGELTMG---GLIACVMLS 411
Query: 936 SLVMSIQNQCT--LANY---IISVERLNQYMHVPSEAPEVVEDNRPPPNWPVV-GKVDIC 989
++ Q L Y +++ L++ M +P E PE + P + G+++
Sbjct: 412 GRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE----GTRFLHRPRLQGEIEFR 467
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
++ Y L +S T G K+ I+GR GSGK+TL+ L L +P G +L+DG+
Sbjct: 468 NVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV 527
Query: 1050 DISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQH-TDQEIWEVLAKCHLGEAVREK 1108
DI ++ DLR G +PQDP LF GT+R N+ + + D+EI + E VR
Sbjct: 528 DIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRH 587
Query: 1109 ENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE 1168
+GLD + E G + S GQRQ L RALLR IL+LDE T+++DN ++ + ++
Sbjct: 588 PDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRW 647
Query: 1169 FADCTVITVAHRIPTVMD-CTMVLAISDGKL 1198
A T++ V HR +++D ++ + +G++
Sbjct: 648 LAGKTLVLVTHR-TSLLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 1e-51
Identities = 147/536 (27%), Positives = 245/536 (45%), Gaps = 70/536 (13%)
Query: 716 FVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSS----- 770
+ F +++SL+ + L R SL + + + L R P+SF+ G + SR
Sbjct: 187 VGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAMGISQIR 246
Query: 771 -DLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVI--------FLAIRL 821
LS L S IFA+ NLG++ +W++ V++ + L +
Sbjct: 247 RILSGSTLTTLLSGIFAL-------LNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQ 299
Query: 822 QRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPF 881
R + L+ L+G L + I G +R E+R FA+ +
Sbjct: 300 VRK----ERRLLELSGKISGLTV----QLINGISKLRVAGAENRAFAR-----------W 340
Query: 882 FQTFAANEWL---IQRLETLSAT------VISSA---AFCMVLLPPGTFTPG-FIGMALS 928
+ F+ L QR+E L V++SA A + LL + G F+ +
Sbjct: 341 AKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTA 400
Query: 929 YGLSLNSSLVMSIQNQCTLANYIISV-ERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVD 987
+G + V + N +I + ER + E V++ + P + G ++
Sbjct: 401 FGSFSGA--VTQLSNTLISILAVIPLWERAKPILEALPE----VDEAKTDPG-KLSGAIE 453
Query: 988 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD 1047
+ + RYRPD PL+L +S E G + IVG +GSGK+TL+ L P G + D
Sbjct: 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYD 513
Query: 1048 GIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVRE 1107
G D++ L + +R + G++ Q+ L +G++ N+ + T E WE L E +R
Sbjct: 514 GQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRA 573
Query: 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA 1167
G+ +++ E G S GQRQ + RAL+R+ RIL+ DEAT+++DN T I+ +++
Sbjct: 574 MPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER 633
Query: 1168 EFADCTVITVAHRIPTVMDCTMVLAISDGKLAE---YDEPMKLMKREGSLFGQLVR 1220
T I +AHR+ T+ + + + G++ + YDE LM REG LF QL R
Sbjct: 634 LKV--TRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDE---LMAREG-LFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 2e-51
Identities = 85/242 (35%), Positives = 146/242 (60%), Gaps = 13/242 (5%)
Query: 986 VDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043
++ ++ RY RPD P +LKG+S T G + +VG +G GK+T++ L R +P G+
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1044 ILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL-----DPLSQHTDQEIWEVLAK 1098
IL+DG+DI L L LRS+ G++ Q+P LF+GT+ N+ D TD+E+ E K
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDA----TDEEVEEAAKK 115
Query: 1099 CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158
++ + + +G D+LV E GS S GQ+Q + RALLR +IL+LDEAT+++D ++
Sbjct: 116 ANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175
Query: 1159 MILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218
++Q+ + T I +AHR+ T+ + ++ + +G++ E +LM ++G ++ +L
Sbjct: 176 KLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKG-VYAKL 234
Query: 1219 VR 1220
V+
Sbjct: 235 VK 236
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 1e-48
Identities = 128/587 (21%), Positives = 227/587 (38%), Gaps = 103/587 (17%)
Query: 686 TILQNSWLAANV-----ENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSL 740
I Q + LA + S L L+++ L+ + R + SL
Sbjct: 16 IIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASL 75
Query: 741 FSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFS-----LIFAVGATTNAYS 795
+L+ L + +F P G + I L+ ++ + +
Sbjct: 76 RQLVLDKLAKLGPAFIAQKPAGSAATLALE--GIEQLEPYYARYLPQMFLSAIVP----- 128
Query: 796 NLGVLAVVTWQ------VLFVSIPVIFLAI--------RLQRYYFATAKELMRLNGTTKS 841
L +L + + +L ++ P+I L + F+ L RL+G
Sbjct: 129 -LLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSA---LARLSG---- 180
Query: 842 LVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPF-----------FQTFAANEW 890
H + + G T+RAF + + I ++ F F + A E+
Sbjct: 181 ----HFLDRLRGLETLRAFGRTEATEER----IRKDSEDFRKATMSVLRIAFLSSAVLEF 232
Query: 891 LIQRLETLS-ATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLAN 949
LS A V F ++ T G + L+
Sbjct: 233 FA----YLSIALVAVYIGFRLLGEGDLTLFAGLFVLILA-------------------PE 269
Query: 950 YIISVERLNQYMHVP-------------SEAPEVVEDNRPPPNWPVVGKVDICDLQIRYR 996
+ + L + H E+P + ++I + +R
Sbjct: 270 FFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFR 329
Query: 997 -PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG 1055
PD L ++ T + G +VG +G+GK+TL+ L + P G+I V+GID+ L
Sbjct: 330 YPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLS 389
Query: 1056 LHDLRSRFGIIPQDPTLFNGTVRYNL---DPLSQHTDQEIWEVLAKCHLGEAVREKENGL 1112
R + + Q+P LF GT+R N+ P + +D+EI L + L E V K +GL
Sbjct: 390 PEAWRKQISWVSQNPYLFAGTIRENILLARPDA--SDEEIIAALDQAGLLEFVP-KPDGL 446
Query: 1113 DSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADC 1172
D+++ E G+ S GQ Q L RALL + +L+LDE TA +D T+ I+ + ++
Sbjct: 447 DTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQK 506
Query: 1173 TVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219
TV+ + HR+ D ++ + +G+L E +L +++G L+ L+
Sbjct: 507 TVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQG-LYANLL 552
|
Length = 559 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 2e-48
Identities = 76/218 (34%), Positives = 115/218 (52%), Gaps = 5/218 (2%)
Query: 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043
G+++ ++ Y L +S T G K+ I+GR GSGK+TL+ L L +P G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1044 ILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL---DPLSQHTDQEIWEVLAKCH 1100
+L+DG DI +L DLR G +PQD TLF GT+R N+ PL D+ I
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAG 118
Query: 1101 LGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMI 1160
+ + V + NGLD + E G S GQRQ L RALL IL+LDE T+++D ++
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 1161 LQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKL 1198
L++ +R D T+I + HR + ++ + G++
Sbjct: 179 LKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 2e-46
Identities = 139/533 (26%), Positives = 260/533 (48%), Gaps = 60/533 (11%)
Query: 707 LIVVYLLIGFVSTLF------LMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTP 760
L Y+ + ++ L +R+ VV +R+ ++++ R P+S +D+ P
Sbjct: 67 LAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRT------DVMDAALRQPLSAFDTQP 120
Query: 761 LGRVLSRVSSDLSIV-DLDVPFSLIFAVGATTNAYSNLGVLAV----VTWQVLFVSIPVI 815
+G+++SRV++D ++ DL V V + + +G + V + W++ V+I +I
Sbjct: 121 VGQLISRVTNDTEVIRDLYV-----TVVATVLRSAALIGAMLVAMFSLDWRMALVAI-MI 174
Query: 816 FLAIRL-----QRYYFATAKELMRLNGTTKSLVA---NHLAESIAGAMTIRAFEEEDRFF 867
F A+ + QRY + + ++ +A + E I G I+ F ++ RF
Sbjct: 175 FPAVLVVMVIYQRYSTPIVRRV-------RAYLADINDGFNEVINGMSVIQQFRQQARFG 227
Query: 868 AKNLDLIDTNASPF---FQTFAANEWLIQRLETLSATVISSAAFCMVLL-----PPGTFT 919
+ + + + S + QT + +L++ L +L S+ C +L+ GT
Sbjct: 228 ER---MGEASRSHYMARMQTLRLDGFLLRPLLSL----FSALILCGLLMLFGFSASGTIE 280
Query: 920 PGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPN 979
G + +SY LN L+ Q L +++ ER+ + M P + + D+RP +
Sbjct: 281 VGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQ--QYGNDDRPLQS 338
Query: 980 WPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP 1039
G++DI ++ YR D+ VL+ I+ + + +VG TGSGK+TL L
Sbjct: 339 ----GRIDIDNVSFAYRDDNL-VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL 393
Query: 1040 AGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKC 1099
G+I +DG +S L LR ++ QDP + T N+ +++++W+ L
Sbjct: 394 TEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETV 453
Query: 1100 HLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM 1159
L E R +GL + + E G+N S+GQ+QL L R L++ +IL+LDEATA+ID+ T+
Sbjct: 454 QLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQ 513
Query: 1160 ILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREG 1212
+Q+ + A T++ +AHR+ T+++ +L + G+ E +L+ +G
Sbjct: 514 AIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQG 566
|
Length = 592 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 3e-46
Identities = 154/594 (25%), Positives = 265/594 (44%), Gaps = 86/594 (14%)
Query: 666 GSGKSTLLAAILGE--VPHTQGTILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLM 723
S L + LGE +P G ++ L + P ++ I L+ S++
Sbjct: 164 ISAFVFLTLSSLGEMFIPFYTGRVI--DTLGGDKGPPALA--SAIFFMCLLSIASSVSAG 219
Query: 724 SR------SLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDL 777
R +++ + L IR L SL R + F+D G + SR+SSD +
Sbjct: 220 LRGGSFNYTMARINLRIRE------DLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSR 273
Query: 778 DVPFSLIFAVGATTNAYSNLGVLAVVTWQ---VLFVSIPVIFLAIR-LQRYYFATAKELM 833
+ ++ + LG + ++ + V +++P++FLA + + Y ++EL
Sbjct: 274 SLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQ 333
Query: 834 RLNGTTKSLVANHLAESIAGAM-TIRAF----EEEDRFFAKNLDLIDTNASPFFQTFAAN 888
K+ N +AE M T+R+F E RF + + N +A
Sbjct: 334 --EAVAKA---NQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKAL-AYAGY 387
Query: 889 EWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLA 948
W L L ++ L YG L + +S N L
Sbjct: 388 LWTTSVLGMLIQVLV-----------------------LYYGGQLVLTGKVSSGN---LV 421
Query: 949 NYIISVERLNQYMHVPSE-----------APEVVE--DNRP--PPN-----WPVVGKVDI 988
++++ E+L + + V S + +V E D +P P + G ++
Sbjct: 422 SFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEF 481
Query: 989 CDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILV 1046
D+ Y RPD P VLKG++ T G + +VG +GSGK+T+ L L +P GG++L+
Sbjct: 482 QDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540
Query: 1047 DGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLD-PLSQHTDQEIWEVLAKCHLGEAV 1105
DG+ + + H L + ++ Q+P LF+G+VR N+ L+ D+EI + + +
Sbjct: 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFI 600
Query: 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI 1165
E NG D+ V E GS S GQ+Q + RAL+R+ R+L+LDEAT+++D + +LQ++
Sbjct: 601 MEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES- 659
Query: 1166 RAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219
A TV+ +AHR+ TV +L + G + E +LM+ +G + LV
Sbjct: 660 -RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQG-CYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 5e-46
Identities = 130/556 (23%), Positives = 252/556 (45%), Gaps = 54/556 (9%)
Query: 690 NSWLAANVENPNVSTLRLIVVYLLIGFVST--LFLMSRSLSSVVLGIRSSKSLFSQLLNS 747
+ + + N L+VV L++ + +L++ LG R + +
Sbjct: 47 HGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW------LGERVVADIRRAVFAH 100
Query: 748 LFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQ- 806
L SF+D G V+SR+++D +++ + SL A+ L ++ + + +
Sbjct: 101 LISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKL 160
Query: 807 --VLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVAN---HLAESIAGAMTIRAF- 860
++ +++P++ L I + + +L+ ++ +A+ + E++ T++AF
Sbjct: 161 TSLVLLAVPLVLLPI------LLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFG 214
Query: 861 -EEEDR-FFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVL------ 912
E+ +R F ++ A Q L T V+ A VL
Sbjct: 215 HEDAERSRFGGAVEKAYEAAR---QRIRTRALL-----TAIVIVLVFGAIVGVLWVGAHD 266
Query: 913 LPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVE 972
+ G + G +G + Y + + S+ TL+ ++R E +
Sbjct: 267 VIAGKMSAGTLGQFVFYAVMVAGSI-------GTLSEVWGELQRAAGAAERLIELLQAEP 319
Query: 973 DNRPPPN-----WPVVGKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSG 1025
D + P + P+ G+++ + Y RPD P L G++ T G + +VG +G+G
Sbjct: 320 DIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQP-ALDGLNLTVRPGETVALVGPSGAG 378
Query: 1026 KTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS 1085
K+TL L R +P G+IL+DG+D+ +L +LR+R ++PQDP LF +V N+
Sbjct: 379 KSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGR 438
Query: 1086 QH-TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRIL 1144
TD+E+ H E + G D+ + E G S GQRQ + RA+L+ + IL
Sbjct: 439 PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPIL 498
Query: 1145 VLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEP 1204
+LDEAT+++D ++ ++Q+ + T + +AHR+ TV+ ++ + G++
Sbjct: 499 LLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTH 558
Query: 1205 MKLMKREGSLFGQLVR 1220
+L+ +G L+ +L R
Sbjct: 559 AELI-AKGGLYARLAR 573
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 7e-46
Identities = 81/232 (34%), Positives = 129/232 (55%), Gaps = 12/232 (5%)
Query: 994 RYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK 1053
RY+PD P++L IS + G +GIVGR+GSGK+TL + R P G++LVDG D++
Sbjct: 9 RYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLAL 68
Query: 1054 LGLHDLRSRFGIIPQDPTLFNGTVRYNL---DP-LSQHTDQEIWEV--LAKCHLGEAVRE 1107
LR + G++ Q+ LFN ++R N+ DP +S + E LA H + + E
Sbjct: 69 ADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSME---RVIEAAKLAGAH--DFISE 123
Query: 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA 1167
G D++V E G+ S GQRQ + RAL+ RIL+ DEAT+++D ++ + + +
Sbjct: 124 LPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHD 183
Query: 1168 EFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219
A TVI +AHR+ TV + ++ + G++ E +L+ G L+ L
Sbjct: 184 ICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENG-LYAYLY 234
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 1e-43
Identities = 105/472 (22%), Positives = 189/472 (40%), Gaps = 43/472 (9%)
Query: 762 GRVLSRVSSDLS---------IVDLDVPFSLIFAVGATTNAYS-NLGVLAVVTWQVLFVS 811
G +L+R+ +D+ I V LI V + +S L +L + +L +
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLI 174
Query: 812 IPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNL 871
IP +F R L + +S + + G + F ED +
Sbjct: 175 IPTLFY-----RAGRKFGAHLAQGRAALRS----QFTDWVQGQAELLIFGAEDAYRTALE 225
Query: 872 DLIDTNASPFFQTFAANEWLIQRLETLS-ATVISSAAFCMVLL--------PPGTFTPGF 922
+ + + R LS A ++ A ++ L G
Sbjct: 226 ATEAS--------WLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPG 277
Query: 923 IGMALSYGLSLNSSLV-MSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWP 981
+AL + + ++ L I S RLN + + PEV +
Sbjct: 278 AALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLND---ILDQKPEVTFPDEQTATTG 334
Query: 982 VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG 1041
++ ++ Y LK + T G K+ I+GR+GSGK+TL+ L +P
Sbjct: 335 QALELR--NVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ 392
Query: 1042 GKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQH-TDQEIWEVLAKCH 1100
G I ++G++I+ L LR ++ Q LF+GT+R NL + +D+E+W L +
Sbjct: 393 GSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVG 452
Query: 1101 LGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMI 1160
L + + +GL++ + E G S G+R+ L RALL + + +LDE T +D T+
Sbjct: 453 LEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQ 512
Query: 1161 LQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREG 1212
+ + T++ V HR+ + ++ + +GK+ E +L+ G
Sbjct: 513 VLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNG 564
|
Length = 573 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 4e-41
Identities = 145/559 (25%), Positives = 262/559 (46%), Gaps = 73/559 (13%)
Query: 696 NVENPNVSTLRLIVVYLLI-----GFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFR 750
+ + + L+V+ L+I F+S+ + S VV+ +R + LF ++
Sbjct: 58 KADRSVLKWMPLVVIGLMILRGITSFISSYCISWVS-GKVVMTMR--RRLFGHMMG---- 110
Query: 751 APMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAV--GATTNAYSNLGVLAVV---TW 805
P+SF+D G +LSR++ D V +LI V GA S +G+ ++ +W
Sbjct: 111 MPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGA-----SIIGLFIMMFYYSW 165
Query: 806 Q---VLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAF-- 860
Q +L V P++ +AIR+ F + M+ T V + + G + F
Sbjct: 166 QLSLILIVIAPIVSIAIRVVSKRFRNISKNMQ---NTMGQVTTSAEQMLKGHKEVLIFGG 222
Query: 861 --EEEDRFFA-------KNLDLIDTNASPFFQTFAANEWLIQRLETLS-ATVISSAAF-- 908
E RF + + ++ ++ ++ +IQ + +L+ A V+ +A+F
Sbjct: 223 QEVETKRFDKVSNRMRQQGMKMVSASS--------ISDPIIQLIASLALAFVLYAASFPS 274
Query: 909 CMVLLPPGTFTPGFIGM-ALSYGL-SLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSE 966
M L GT T F M AL L SL + ++ Q Q +A + + L + + E
Sbjct: 275 VMDTLTAGTITVVFSSMIALMRPLKSLTN---VNAQFQRGMA----ACQTLFAILDLEQE 327
Query: 967 APE---VVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTG 1023
E V+E G ++ ++ Y L+ I+ G + +VGR+G
Sbjct: 328 KDEGKRVIE--------RAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSG 379
Query: 1024 SGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDP 1083
SGK+T+ L R + G+IL+DG D+ L LR++ ++ Q+ LFN T+ N+
Sbjct: 380 SGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAY 439
Query: 1084 LS--QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141
Q++ ++I E + + + + +NGLD+++ E+G S GQRQ + RALLR S
Sbjct: 440 ARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS 499
Query: 1142 RILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEY 1201
IL+LDEAT+++D ++ +Q + + T + +AHR+ T+ +L + DG++ E
Sbjct: 500 PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVER 559
Query: 1202 DEPMKLMKREGSLFGQLVR 1220
+L+ + G + QL +
Sbjct: 560 GTHAELLAQNGV-YAQLHK 577
|
Length = 582 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 1e-40
Identities = 152/546 (27%), Positives = 244/546 (44%), Gaps = 64/546 (11%)
Query: 701 NVSTLRLIVVYL----LIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFY 756
+V L ++ V + L G + LF S V LG R L+ LL P+ ++
Sbjct: 179 SVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGAR----LYRHLLG----LPLGYF 230
Query: 757 DSTPLGRVLSRV-----------SSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTW 805
+S +G ++RV S L++V LD+ F ++F A YS +T
Sbjct: 231 ESRRVGDTVARVRELEQIRNFLTGSALTVV-LDLLFVVVFL--AVMFFYS-----PTLTG 282
Query: 806 QVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANH--LAESIAGAMTIRAFEEE 863
V+ S+ L F R+ + A L ES+ G TI+A E
Sbjct: 283 VVIG-SLVCYALL-----SVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATE 336
Query: 864 DRFFAK-NLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAA---FCMVLLPPGTFT 919
+F + + L A+ F T N Q +E + ++ A F L+ G +
Sbjct: 337 PQFQNRWDRQLAAYVAASFRVTNLGN-IAGQAIELIQK--LTFAILLWFGAHLVIGGALS 393
Query: 920 PG---FIGMALSYGLSLNSSLVMSIQN-QCTLANYIISVERLNQYMHVPSEAPEVVEDNR 975
PG M L Q+ Q T I++ERL ++ P+E
Sbjct: 394 PGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTG----IALERLGDILNSPTEPRSAGLAAL 449
Query: 976 PPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFR 1035
P G + +++ RY PDSP VL ++ + G IGIVG +GSGK+TL L R
Sbjct: 450 PELR----GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQR 505
Query: 1036 LVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEV 1095
L P G++LVDG+D++ LR + G++ Q+ LF+ ++R N+ + E V
Sbjct: 506 LYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFE--HV 563
Query: 1096 LAKCHLGEA---VREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATAS 1152
+ L A + E G ++ V E G+N S GQRQ + RAL+ RIL+ DEAT++
Sbjct: 564 IHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSA 623
Query: 1153 IDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREG 1212
+D ++ ++ + +R TVI +AHR+ TV C ++ + G++AE +L+
Sbjct: 624 LDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELL-ALQ 682
Query: 1213 SLFGQL 1218
L+ +L
Sbjct: 683 GLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 1e-40
Identities = 139/553 (25%), Positives = 241/553 (43%), Gaps = 82/553 (14%)
Query: 712 LLIGFVSTLFLMS-----RSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLS 766
LL+G T L + L I+ + + ++ L + R P+ F+ G + S
Sbjct: 196 LLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIAS 255
Query: 767 RVSSDLSIVDL---DVPFSLIFAVGATTNA-----YSN-LGVLAVVT-----WQVLFVSI 812
RV + + + + + + AV A Y L ++ + + VS
Sbjct: 256 RVQLNDQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSR 315
Query: 813 PVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAM---TIRAFEEEDRFFAK 869
+ RLQ ++ +L G +I+G T++A E FF++
Sbjct: 316 RRVDANRRLQ-------QDAGKLTGV-----------AISGLQSIETLKASGLESDFFSR 357
Query: 870 NLDLIDTNASPFFQTFAANEWLIQRLETLSA---------TVISSAAFCMV---LLPPGT 917
+Q N Q L L+ T ++SA +V + G
Sbjct: 358 WAG---------YQAKLLNA--QQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQ 406
Query: 918 FTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVE----RLNQYMHVPSEAPEVVED 973
T IGM +++ SL SS + + N + +E RL+ + P + P + E+
Sbjct: 407 LT---IGMLVAF-QSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVD-PLLEEE 461
Query: 974 NRP----PPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTL 1029
P P+ + G V++ ++ Y P P +++ S T + G ++ +VG +GSGK+T+
Sbjct: 462 EAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTI 521
Query: 1030 IGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHT- 1088
+ L +P G+IL DGI ++ L + ++ QD LF GTVR NL L T
Sbjct: 522 AKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLT-LWDPTI 580
Query: 1089 -DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLD 1147
D ++ + + + + G D+ + E G+N S GQRQ + RAL+R IL+LD
Sbjct: 581 PDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILD 640
Query: 1148 EATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKL 1207
EAT+++D T+ I+ +R CT I VAHR+ T+ DC ++ + GK+ + +L
Sbjct: 641 EATSALDPETEKIIDDNLRRR--GCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEEL 698
Query: 1208 MKREGSLFGQLVR 1220
G + +L+R
Sbjct: 699 WAVGG-AYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 1e-39
Identities = 142/576 (24%), Positives = 257/576 (44%), Gaps = 70/576 (12%)
Query: 671 TLLAAILGEVPHTQGTILQNSWLAANVENPNVSTLRLIVVYLLIGFV-STLFLMSRSLSS 729
++AAI+ + G+ + + + + TL +I + L+I ++ + +
Sbjct: 161 IVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLL 220
Query: 730 VVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVD----------LDV 779
VLG R S + + LF PMSF+ + G ++SR + SI+D LD+
Sbjct: 221 NVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALASTILSLFLDM 280
Query: 780 PFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTT 839
++ VG L ++ + + +SIPV + I L + T +L
Sbjct: 281 --WILVIVGLF------LVRQNMLLFLLSLLSIPVYAVIIIL---FKRTFNKLNHDAMQA 329
Query: 840 KSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQ---TFAANEWLIQRLE 896
+++ + + E + G TI++ E ++K ID+ + + + Q ++
Sbjct: 330 NAVLNSSIIEDLNGIETIKSLTSEAERYSK----IDSEFGDYLNKSFKYQKADQGQQAIK 385
Query: 897 TLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMS-----IQN----QCTL 947
++ +++ +V+L G + + L+ G + + ++S ++N Q L
Sbjct: 386 AVTKLILN-----VVILWTGAYL--VMRGKLTLGQLITFNALLSYFLTPLENIINLQPKL 438
Query: 948 ANYIISVERLNQYMHVPSE---APEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLK 1004
++ RLN+ V SE + E N G + I D+ Y S +L
Sbjct: 439 QAARVANNRLNEVYLVDSEFINKKKRTELNNL------NGDIVINDVSYSYGYGSN-ILS 491
Query: 1005 GISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064
IS T + K IVG +GSGK+TL L + G+IL++G + + H LR
Sbjct: 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551
Query: 1065 IIPQDPTLFNGTVRYNLDPLSQH--TDQEIWEVLAKCHLGEAVREKEN---GLDSLVVED 1119
+PQ+P +F+G++ NL ++ + EIW C + E + EN G + + E+
Sbjct: 552 YLPQEPYIFSGSILENLLLGAKENVSQDEIWAA---CEIAEIKDDIENMPLGYQTELSEE 608
Query: 1120 GSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF---ADCTVIT 1176
GS+ S GQ+Q L RALL S++L+LDE+T+++ D I +K I D T+I
Sbjct: 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNL----DTITEKKIVNNLLNLQDKTIIF 664
Query: 1177 VAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREG 1212
VAHR+ ++ + GK+ E +L+ R G
Sbjct: 665 VAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNG 700
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 5e-39
Identities = 82/240 (34%), Positives = 126/240 (52%), Gaps = 11/240 (4%)
Query: 946 TLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDIC--DLQIRYRPDSPLVL 1003
L + ER+ + V A V E + P +GK + DL Y P +P VL
Sbjct: 296 QLTRVRAAAERIVE---VLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGY-PGAPPVL 351
Query: 1004 KGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063
G+S G ++ I+G +GSGK+TL+ L L++P G++ +DG+ +S L ++R R
Sbjct: 352 DGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRV 411
Query: 1064 GIIPQDPTLFNGTVRYNL---DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120
+ QD LF+ TVR NL P TD+E+W L + L + +R +GLD+++ E G
Sbjct: 412 SVCAQDAHLFDTTVRENLRLARP--DATDEELWAALERVGLADWLRALPDGLDTVLGEGG 469
Query: 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHR 1180
+ S G+RQ L RALL + IL+LDE T +D T L + + A + TV+ + H
Sbjct: 470 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 1e-38
Identities = 85/263 (32%), Positives = 134/263 (50%), Gaps = 12/263 (4%)
Query: 966 EAPEVVEDNRPPPNWPVV-GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGS 1024
EV + PP WPV G V ++ Y P P +L GIS T G + IVG +G+
Sbjct: 242 VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGA 300
Query: 1025 GKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL--- 1081
GK+T++ LFR + G I +DG DI + LR GI+PQD LFN T+ YN+
Sbjct: 301 GKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYG 360
Query: 1082 DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141
P + T +E+ + + ++ G D+ V E G S G++Q + R +L+
Sbjct: 361 RPDA--TAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP 418
Query: 1142 RILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEY 1201
IL+LDEAT+++D T+ +Q +R A T + +AHR+ T++D ++ + +G++ E
Sbjct: 419 PILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478
Query: 1202 DEPMKLMKREGSLFGQLVREYWS 1224
+L+ G L E W
Sbjct: 479 GTHEELLAAGG-----LYAEMWR 496
|
Length = 497 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 1e-36
Identities = 84/276 (30%), Positives = 138/276 (50%), Gaps = 21/276 (7%)
Query: 956 RLNQYMHVPSEAPEVVE--DNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGG 1013
+L ++ V P+V + V G V+ D+ Y +S ++ +S + G
Sbjct: 305 KLEEFFEVEDAVPDVRDPPGAIDLGR--VKGAVEFDDVSFSY-DNSRQGVEDVSFEAKPG 361
Query: 1014 HKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLF 1073
+ IVG TG+GK+TLI L R+ +P G+IL+DG DI + LR ++ QD LF
Sbjct: 362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF 421
Query: 1074 NGTVRYNL-----DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128
N ++ N+ D TD+E+ + + + K +G D++V E G S G+R
Sbjct: 422 NRSIEDNIRVGRPDA----TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477
Query: 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCT 1188
Q + RALL+ IL+LDEAT+++D T+ ++ + T +AHR+ TV +
Sbjct: 478 QRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNAD 537
Query: 1189 MVLAISDGKLAE---YDEPMKLMKREGSLFGQLVRE 1221
+L +G++ E +DE L+ R G F L+R
Sbjct: 538 RILVFDNGRVVESGSFDE---LVARGG-RFAALLRA 569
|
Length = 588 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 1e-36
Identities = 70/231 (30%), Positives = 110/231 (47%), Gaps = 9/231 (3%)
Query: 971 VEDNRPPPNWPVVGKVDICDLQIRYR------PDSPLVLKGISCTFEGGHKIGIVGRTGS 1024
V D P P + + P L+ +S T G ++ +VG +G+
Sbjct: 300 VLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGA 359
Query: 1025 GKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPL 1084
GK+TL+ L V+P G I V+G+ ++ R + +PQ P LF GT+ N+ L
Sbjct: 360 GKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIR-L 418
Query: 1085 SQH--TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142
++ +D EI E L + L E V GLD+ + E G+ S GQ Q L RA LR +
Sbjct: 419 ARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAP 478
Query: 1143 ILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAI 1193
+L+LDE TA +D T+ + + +RA TV+ V HR+ ++ +
Sbjct: 479 LLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 3e-35
Identities = 70/218 (32%), Positives = 120/218 (55%), Gaps = 4/218 (1%)
Query: 984 GKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG 1041
G V ++ Y RPD+ VL+ +S T G +VG +GSGK+T++ L +P G
Sbjct: 10 GIVKFQNVTFAYPTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 1042 GKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLD-PLSQHTDQEIWEVLAKCH 1100
G++L+DG IS+ L S+ ++ Q+P LF +++ N+ L + + + E K H
Sbjct: 69 GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAH 128
Query: 1101 LGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMI 1160
+ E +G D+ V E GS S GQ+Q + RAL+R ++L+LDEAT+++D ++
Sbjct: 129 AHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1161 LQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKL 1198
+Q+ + TV+ +AHR+ TV +L + G++
Sbjct: 189 VQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 3e-34
Identities = 65/212 (30%), Positives = 98/212 (46%), Gaps = 42/212 (19%)
Query: 988 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD 1047
+ ++ RY P VL+ +S + E G + I+G +GSGK+TL + L+ P G++ +D
Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLD 62
Query: 1048 GIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVRE 1107
G DIS+ ++L G +PQD LF+G++
Sbjct: 63 GADISQWDPNELGDHVGYLPQDDELFSGSIA----------------------------- 93
Query: 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA 1167
EN L S GQRQ L RAL RILVLDE + +D + L + I A
Sbjct: 94 -ENIL-----------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141
Query: 1168 -EFADCTVITVAHRIPTVMDCTMVLAISDGKL 1198
+ A T I +AHR T+ +L + DG++
Sbjct: 142 LKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 3e-34
Identities = 86/255 (33%), Positives = 140/255 (54%), Gaps = 7/255 (2%)
Query: 971 VEDNRPPPNWP----VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGK 1026
V P + P V G V+ + + +S + +S + G + IVG TG+GK
Sbjct: 316 VFQREEPADAPELPNVKGAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGK 374
Query: 1027 TTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLD-PLS 1085
TTLI L R+ +P G+IL+DGIDI+ + LR + QD LFN ++R N+
Sbjct: 375 TTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE 434
Query: 1086 QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV 1145
TD+E++E + + ++ NG D+LV E G+ S G+RQ + RA+L+ + ILV
Sbjct: 435 GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILV 494
Query: 1146 LDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPM 1205
LDEAT+++D T+ ++ I A + T +AHR+ TV + +VL + G+L E
Sbjct: 495 LDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554
Query: 1206 KLMKREGSLFGQLVR 1220
+L++++G F +L+R
Sbjct: 555 ELIQKDGR-FYKLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (356), Expect = 1e-33
Identities = 89/312 (28%), Positives = 156/312 (50%), Gaps = 2/312 (0%)
Query: 299 SVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLF 358
S+LRT+ ++ F LL + P+LL F+ + G L +TLF
Sbjct: 233 SLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLF 292
Query: 359 VAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNA--ARLMHSGGEIMNYVTV 416
+ ++++S+ ++Y+ S GL+ RS L A I++K +S+ A+ + G I+N ++
Sbjct: 293 LTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMST 352
Query: 417 DAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHK 476
D RI F + +W++ + L +++++L VG + A+ V+++T+ N + K Q
Sbjct: 353 DVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMA 412
Query: 477 FQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536
+ K+ A D R+KA +E +++ K AWE F IE R E ++L VQL +
Sbjct: 413 ARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVAT 472
Query: 537 TFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANV 596
+F+ ++P L+ F Y L L VF +A L +++ P +IP V +Q V
Sbjct: 473 SFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLV 532
Query: 597 AFSRIVNFLEAP 608
+ RI FLE
Sbjct: 533 SIKRISTFLECD 544
|
Length = 1560 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 2e-32
Identities = 69/256 (26%), Positives = 130/256 (50%), Gaps = 16/256 (6%)
Query: 972 EDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIG 1031
+ N PV ++ DL+I PD + ++ T G +I +VG +G+GKT+L+
Sbjct: 338 GEKELASNDPV--TIEAEDLEI-LSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLN 394
Query: 1032 ALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL---DPLSQHT 1088
AL + P G + ++GI++ +L R + Q+P L +GT+R N+ +P +
Sbjct: 395 ALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP--DAS 451
Query: 1089 DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDE 1148
D+++ + L + E + GLD+ + + + S+GQ Q L RALL+ ++L+LDE
Sbjct: 452 DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDE 511
Query: 1149 ATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAE---YDEPM 1205
TAS+D ++ ++ + + A T + V H++ + + + DG++ + Y E
Sbjct: 512 PTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAE-- 569
Query: 1206 KLMKREGSLFGQLVRE 1221
+ + G LF L+
Sbjct: 570 --LSQAGGLFATLLAH 583
|
Length = 588 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 3e-32
Identities = 68/247 (27%), Positives = 117/247 (47%), Gaps = 24/247 (9%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
+++ +L +Y D L G+S E G G++G G+GKTTL+ L L++P G+IL
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 1046 VDGIDISKLGLHDLRSRFGIIPQDPTLFNG-TVRYNLD-------PLSQHTDQEIWEVLA 1097
V G D+ K +R R G +PQ+P+L+ TVR NL+ + ++ I E+L
Sbjct: 64 VLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 1098 KCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT 1157
L + +K L S G +Q + ALL +L+LDE T+ +D +
Sbjct: 123 LFGLEDKANKKVRTL-----------SGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 1158 DMILQKTIR--AEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSL 1214
+ + +R A+ T++ H + + C V+ ++DGK+ P +L ++ G
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGK 231
Query: 1215 FGQLVRE 1221
+
Sbjct: 232 GVIELEP 238
|
Length = 293 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 1e-29
Identities = 76/270 (28%), Positives = 134/270 (49%), Gaps = 20/270 (7%)
Query: 951 IISVERLNQYMHVPSEAPEVV--EDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISC 1008
I S R+N+ + PEV + + + + ++ Y VLKG+S
Sbjct: 308 IASARRINEITE---QKPEVTFPTTSTAAAD---QVSLTLNNVSFTYPDQPQPVLKGLSL 361
Query: 1009 TFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQ 1068
+ G K+ ++GRTG GK+TL+ L R +P G+IL++G I+ LR ++ Q
Sbjct: 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQ 421
Query: 1069 DPTLFNGTVRYNL---DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSM 1125
LF+ T+R NL P +D+ + EVL + L + + E + GL++ + E G S
Sbjct: 422 RVHLFSATLRDNLLLAAP--NASDEALIEVLQQVGLEKLL-EDDKGLNAWLGEGGRQLSG 478
Query: 1126 GQRQLFCLGRALLRRSRILVLDEATASIDNATD-MILQKTIRAEFADCTVITVAHRIP-- 1182
G+++ + RALL + +L+LDE T +D T+ IL+ + + TV+ + HR+
Sbjct: 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILE-LLAEHAQNKTVLMITHRLTGL 537
Query: 1183 TVMDCTMVLAISDGKLAEYDEPMKLMKREG 1212
D V+ +G++ E +L+ ++G
Sbjct: 538 EQFDRICVMD--NGQIIEQGTHQELLAQQG 565
|
Length = 574 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 5e-29
Identities = 120/535 (22%), Positives = 213/535 (39%), Gaps = 70/535 (13%)
Query: 704 TLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAP---MSFYDSTP 760
T+ + +YL +G + L RS V +G + +L + + F A S
Sbjct: 49 TVLALGLYLFLGLLDAL----RSFVLVRIGEKLDGALNQPIFAASFSATLRRGSGDGLQA 104
Query: 761 LG---RVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFL 817
L ++ ++ D P+ I+ + + +G+LA+ VL L
Sbjct: 105 LRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGAVVLVG------L 157
Query: 818 AIRLQRYYFATAKELMRLNGTTKSLVANHL--AESIA-----GAMTIRAFEEEDRFFAKN 870
A+ R KE + +L + L AE I G +T R ++ +
Sbjct: 158 ALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQ 217
Query: 871 LDLIDTNA--SPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALS 928
D S + F R+ S + A L G TPG +
Sbjct: 218 SAASDRAGMLSNLSKYF--------RIVLQSLVLGLGA----YLAIDGEITPGMMIA--- 262
Query: 929 YGLSLNSSLVM---------SIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPN 979
S+++ +I + + +RLN+ + + P P
Sbjct: 263 ------GSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMP--LPEPE 314
Query: 980 WPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP 1039
G + + ++ I L+GIS + + G + I+G +GSGK+TL + + P
Sbjct: 315 ----GHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPP 370
Query: 1040 AGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTD-QEIWE--VL 1096
G + +DG D+ + G +PQD LF GTV N+ ++ D ++I E L
Sbjct: 371 TSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKL 430
Query: 1097 AKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA 1156
A H E + +G D+++ G+ S GQRQ L RAL +++VLDE +++D
Sbjct: 431 AGVH--ELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEE 488
Query: 1157 TDMILQKTI-RAEFADCTVITVAHRIPTVMDCT-MVLAISDGKLAEYDEPMKLMK 1209
+ L I + TV+ + HR P+++ C +L + DG++A + E +++
Sbjct: 489 GEQALANAIKALKARGITVVVITHR-PSLLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 6e-29
Identities = 84/385 (21%), Positives = 156/385 (40%), Gaps = 15/385 (3%)
Query: 307 CYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESL 366
I + ALL +L +++A + G E +L + L + + L
Sbjct: 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALLADL----GELLELLLLLLLLALLGGV--L 68
Query: 367 SQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF 426
Q Y +G K+ + L +++K LRL + G++++ +T D +
Sbjct: 69 RALQSYL-GSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVS 127
Query: 427 WFHQIWTTSVQLCIALIILFHAVG-LATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQ 485
+ TS+ L I ++L ++ + L+++ + L + LA+ K ++ A
Sbjct: 128 TVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREAL 187
Query: 486 DERLKACSEALVNMKVLKLYAWETHFKNAIEIL-RNVEYKWLSAVQLRKAYNTFLFWSSP 544
E E+L ++V+K + E E + L A +L + S
Sbjct: 188 GELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSS 247
Query: 545 VLVSTA-TFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVN 603
+ G L+ L + F+ L + PI + +V+ + +A+ A R+
Sbjct: 248 LGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFE 307
Query: 604 FLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICG 663
L+ +++ I ++ SFS+ KP +++IS + PG+KVAI G
Sbjct: 308 LLDEEPEV---EDPPDPLKDTIGSIEFENVSFSYP--GKKPVLKDISFSIEPGEKVAIVG 362
Query: 664 EVGSGKSTLLAAILGEVPHTQGTIL 688
GSGKSTL+ +L T G IL
Sbjct: 363 PSGSGKSTLIKLLLRLYDPTSGEIL 387
|
Length = 567 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 7e-29
Identities = 64/212 (30%), Positives = 89/212 (41%), Gaps = 58/212 (27%)
Query: 988 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD 1047
I +L RY L +S T + G + +VG GSGK+TL+ A+ L++P G+IL+D
Sbjct: 2 IENLSFRY--GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILID 59
Query: 1048 GIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVRE 1107
G DI+KL L +LR R G +PQ LS
Sbjct: 60 GKDIAKLPLEELRRRIGYVPQ---------------LSG--------------------- 83
Query: 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA 1167
GQRQ L RALL +L+LDE T+ +D A+ L + +R
Sbjct: 84 ------------------GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125
Query: 1168 EFAD-CTVITVAHRIPTVMD-CTMVLAISDGK 1197
+ TVI V H V+ + DGK
Sbjct: 126 LAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 3e-28
Identities = 122/498 (24%), Positives = 214/498 (42%), Gaps = 71/498 (14%)
Query: 238 AGFFSRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQ 297
A F S+L FWW P++++G + L DI + + A++ + L++ ++ A
Sbjct: 9 ANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLS-ERLEREWDRELASAKKN 67
Query: 298 PSVLRTIIICY-WRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYE-GYVLAI 355
P +L + C+ WR +F G T + PLLL I + + E Y LA+
Sbjct: 68 PKLLNALRRCFFWRFVFY-GILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLAL 126
Query: 356 TLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVT 415
L + I+ +L F +G+++R L + IYKK L+LS+ S G++++ ++
Sbjct: 127 GLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLS 186
Query: 416 VDAYRIGEFPFWFHQIWTTSVQ--LCIALII-LFHAVGLATIAALVVIMITVLCNAPLAK 472
+ + E H +W +Q L + LI L G + L+++ + C L +
Sbjct: 187 NNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQAC---LGQ 243
Query: 473 LQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLR 532
++ K ERL SE + N++ +K Y WE + I+ +R E K +
Sbjct: 244 KMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYL 303
Query: 533 KAYNTFLFWSSPVLVSTATFGACYFLNVPLYA-------SNVFT---FVATLRLVQDPIR 582
+ + + F+ S V FL+V YA +FT + LR+ R
Sbjct: 304 RYFYSSAFFFSGFFV--------VFLSVVPYALIKGIILRRIFTTISYCIVLRMTV--TR 353
Query: 583 VIPDVIGVFIQANVAFSRIVNFLEAPELQSM--NIRQKGNIENVNHVISIKSASFSWEES 640
P I + + A ++I +FL E +++ N+ +E VN + SW+E
Sbjct: 354 QFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTT-EVEMVN-------VTASWDEG 405
Query: 641 SSK-------------------------------PTMRNISLEVRPGQKVAICGEVGSGK 669
+ P ++NIS ++ GQ +A+ G GSGK
Sbjct: 406 IGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGK 465
Query: 670 STLLAAILGEVPHTQGTI 687
S+LL I+GE+ ++G I
Sbjct: 466 SSLLMMIMGELEPSEGKI 483
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 4e-28
Identities = 68/223 (30%), Positives = 107/223 (47%), Gaps = 30/223 (13%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
+L Y + L IS T + G + IVG GSGK+TL+ L L+ P G++LVDG
Sbjct: 4 NLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGK 63
Query: 1050 DISKLGLHDLRSRFGIIPQDPT--LFNGTVR---------YNLDPLSQHTDQEIWEVLAK 1098
D++KL L +LR + G++ Q+P F TV L + ++ + E L
Sbjct: 64 DLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPE--EEIEERVEEALEL 121
Query: 1099 CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID-NAT 1157
L E +R++ +L S GQ+Q + L IL+LDE TA +D
Sbjct: 122 VGL-EGLRDRS--PFTL--------SGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGR 170
Query: 1158 DMILQ--KTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGK 1197
+L+ K ++AE T+I V H + +++ V+ + DGK
Sbjct: 171 RELLELLKKLKAEGK--TIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 5e-28
Identities = 64/239 (26%), Positives = 107/239 (44%), Gaps = 32/239 (13%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
+L Y +L +S + G GI+G GSGK+TL+ L L++P G++L+DG
Sbjct: 7 NLSFGY--GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK 64
Query: 1050 DISKLGLHDLRSRFGIIPQDPTLFNG-TV-------RY-NLDPLSQHTDQEIWEVLAKCH 1100
DI+ L +L + +PQ P+ G TV RY +L + + ++ V
Sbjct: 65 DIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALE 124
Query: 1101 LGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMI 1160
L + +D L S G+RQ + RAL + + IL+LDE T+ +D A +
Sbjct: 125 LLGLEHLADRPVDEL--------SGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIE 176
Query: 1161 LQKTIR--AEFADCTVITVAH------RIPTVMDCTMVLAISDGKLAEYDEPMKLMKRE 1211
+ + +R TV+ V H R ++ + DGK+ P +++ E
Sbjct: 177 VLELLRDLNREKGLTVVMVLHDLNLAARY-----ADHLILLKDGKIVAQGTPEEVLTEE 230
|
Length = 258 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 1e-27
Identities = 72/237 (30%), Positives = 115/237 (48%), Gaps = 19/237 (8%)
Query: 988 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD 1047
+L RY LK +S E G ++ ++G GSGK+TL+ L L++P G++LVD
Sbjct: 6 AENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVD 64
Query: 1048 GIDIS-KLGLHDLRSRFGIIPQDPT--LFNGTVRYNLD---PLSQHTDQEIWEVLAKCHL 1101
G+D S + L +LR + G++ Q+P LF TV + +EI E +A+
Sbjct: 65 GLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE--A 122
Query: 1102 GEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID-NATDMI 1160
E V GL+ L+ N S GQ+Q + L IL+LDE TA +D +
Sbjct: 123 LELV-----GLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177
Query: 1161 LQ--KTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSL 1214
L+ K ++ E T+I V H + V++ V+ + DGK+ +P ++ L
Sbjct: 178 LELLKKLKEEG-GKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-26
Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 39/211 (18%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
++ Y VLK +S + G KI ++GR+GSGK+TL+ L ++P G+I +DG+
Sbjct: 5 NVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGV 64
Query: 1050 DISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKE 1109
+S L L S ++ Q P LF+ T+R NL
Sbjct: 65 PVSDLE-KALSSLISVLNQRPYLFDTTLRNNL---------------------------- 95
Query: 1110 NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF 1169
G +S G+RQ L R LL+ + I++LDE T +D T+ L I
Sbjct: 96 ----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL 145
Query: 1170 ADCTVITVAHRIPTVMDCTMVLAISDGKLAE 1200
D T+I + H + + +L + +GK+
Sbjct: 146 KDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 3e-26
Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 8/207 (3%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
+LKGIS + G +GI+G +GSGK+TL L + P G + +DG D+ + L
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQE-IWE--VLAKCHLGEAVREKENGLDSLVVE 1118
G +PQD LF+GT+ N+ + D E + E LA H E + G D+ + E
Sbjct: 411 HIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVH--ELILRLPQGYDTRIGE 468
Query: 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI-RAEFADCTVITV 1177
G+ S GQRQ L RAL ++VLDE +++D+ + L I A+ TV+ +
Sbjct: 469 GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVI 528
Query: 1178 AHRIPTVMDCT-MVLAISDGKLAEYDE 1203
AHR P+ + +L + DG++A +
Sbjct: 529 AHR-PSALASVDKILVLQDGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 70/228 (30%), Positives = 111/228 (48%), Gaps = 36/228 (15%)
Query: 992 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI 1051
++ Y +LK IS FEGG IVG +G+GK+TLI + RL++P G IL+DG+DI
Sbjct: 8 EVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDI 67
Query: 1052 SKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKEN- 1110
+ + DLR + G++ Q P LF GTV+ N++ G ++ ++N
Sbjct: 68 KTIDVIDLRRKIGMVFQQPHLFEGTVKDNIE------------------YGPMLKGEKNV 109
Query: 1111 ---------GLD-SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMI 1160
GL+ D N S G+ Q + R L +L+LDE T+++D + I
Sbjct: 110 DVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI 169
Query: 1161 LQKTIR--AEFADCTVITVAHRIPT---VMDCTMVLAISDGKLAEYDE 1203
+++ I + TVI + H + + D T L + G L EY +
Sbjct: 170 IEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFL--NKGILVEYAK 215
|
Length = 241 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-25
Identities = 81/253 (32%), Positives = 126/253 (49%), Gaps = 11/253 (4%)
Query: 965 SEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGS 1024
+EAP V + + P P V+I Q Y L+ ++ T + G +GI G TGS
Sbjct: 295 AEAPVVKDGSEPVPEGRGELDVNI--RQFTYPQTDHPALENVNFTLKPGQMLGICGPTGS 352
Query: 1025 GKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL--- 1081
GK+TL+ + R + + G I I ++KL L RSR ++ Q P LF+ TV N+
Sbjct: 353 GKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALG 412
Query: 1082 DPLSQHTDQEIWEV--LAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139
P T QEI V LA H + + G D+ V E G S GQ+Q + RALL
Sbjct: 413 RP--DATQQEIEHVARLASVH--DDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL 468
Query: 1140 RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLA 1199
+ IL+LD+A +++D T+ + +R TVI AHR+ + + + +L + G +A
Sbjct: 469 NAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIA 528
Query: 1200 EYDEPMKLMKREG 1212
+ +L ++ G
Sbjct: 529 QRGNHDQLAQQSG 541
|
Length = 569 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 5e-25
Identities = 62/232 (26%), Positives = 101/232 (43%), Gaps = 30/232 (12%)
Query: 990 DLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD 1047
+L + + S L +S + + G +G+VG +GSGK+TL A+ L++P G I+ D
Sbjct: 6 NLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFD 65
Query: 1048 GIDISKLGLHDL---RSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQE-IWEVL--AKCHL 1101
G D+ KL R ++ QDP +L+P T E I E L
Sbjct: 66 GKDLLKLSRRLRKIRRKEIQMVFQDPMS-------SLNPR--MTIGEQIAEPLRIHGKLS 116
Query: 1102 GEAVREKENGLDSLVVEDGSNW--------SMGQRQLFCLGRALLRRSRILVLDEATASI 1153
+ R++ L + V S GQRQ + RAL ++L+ DE T+++
Sbjct: 117 KKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSAL 176
Query: 1154 DNAT-DMILQ--KTIRAEFADCTVITVAHRIPTV-MDCTMVLAISDGKLAEY 1201
D + IL K ++ E T++ + H + V V + GK+ E
Sbjct: 177 DVSVQAQILDLLKKLQEEL-GLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-24
Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 31/237 (13%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PA 1040
+++ DL + Y LK IS G ++G +G GK+TL+ L RL + P
Sbjct: 1 IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1041 GGKILVDGIDISKLGLHD--LRSRFGIIPQDPTLFNGTVRYNLD-PLSQH-------TDQ 1090
G++L+DG DI L + LR R G++ Q P F G++ N+ L H D+
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118
Query: 1091 EIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEAT 1150
+ E L K L + V+++ + L L S GQ+Q CL RAL +L+LDE T
Sbjct: 119 RVEEALRKAALWDEVKDRLHAL-GL--------SGGQQQRLCLARALANEPEVLLLDEPT 169
Query: 1151 ASIDNATDMILQKTIRAEFADCTVITVAHRIPT---VMDCTMVLAISDGKLAEYDEP 1204
+++D + +++ I + T++ V H + V D T L +G+L E+
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFL--LNGRLVEFGPT 224
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 6e-24
Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 27/216 (12%)
Query: 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL---GL 1056
L +S G GI+G +G+GK+TL+ + L P G + VDG D++ L L
Sbjct: 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAEL 78
Query: 1057 HDLRSRFGIIPQDPTLFNG-TVRYNLD-PLSQHTDQEIWEVLAKCHLGEAVREKENGLDS 1114
LR + G+I Q L + TV N+ PL E+ V K ++++ L
Sbjct: 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPL------ELAGV-PK----AEIKQRVAELLE 127
Query: 1115 LV-VEDG-----SNWSMGQRQLFCLGRALLRRSRILVLDEATASID-NATDMILQ--KTI 1165
LV + D + S GQ+Q + RAL +IL+ DEAT+++D T IL+ K I
Sbjct: 128 LVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDI 187
Query: 1166 RAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200
E T++ + H + V C V + G+L E
Sbjct: 188 NREL-GLTIVLITHEMEVVKRICDRVAVLDQGRLVE 222
|
Length = 339 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 9e-24
Identities = 67/223 (30%), Positives = 102/223 (45%), Gaps = 24/223 (10%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
+ + +L RY L G+S T G G++G G+GKTTL+ L L P+ G I
Sbjct: 1 LQLENLTKRYG--KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1046 VDGIDISKLGLHDLRSRFGIIPQDPTLF-NGTVRYNLDPL-------SQHTDQEIWEVLA 1097
+DG D+ K LR R G +PQ+ ++ N TVR LD + S+ + EVL
Sbjct: 58 IDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE 116
Query: 1098 KCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT 1157
+LG+ ++K L S G R+ + +AL+ IL++DE TA +D
Sbjct: 117 LVNLGDRAKKKIGSL-----------SGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 1158 DMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLA 1199
+ + + D VI H + V C V ++ GKL
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 68/237 (28%), Positives = 110/237 (46%), Gaps = 31/237 (13%)
Query: 988 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD 1047
+ +L Y P+ LK +S + G + ++G +G+GK+TL+ L LVEP G +L+D
Sbjct: 3 VENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLID 61
Query: 1048 GIDISKLG---LHDLRSRFGIIPQDPTLFNG-TVRYNL--DPLSQHTDQEIWEVLAK--- 1098
G DI+KL L LR + G+I Q L +V N+ L + + W L
Sbjct: 62 GTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRS---TWRSLFGLFP 118
Query: 1099 -------CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATA 1151
E V GL + S GQ+Q + RAL+++ ++++ DE A
Sbjct: 119 KEEKQRALAALERV-----GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA 173
Query: 1152 SIDNATD---MILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEP 1204
S+D A+ M L K I E TVI H++ + ++ + DG++ +D P
Sbjct: 174 SLDPASSRQVMDLLKRINREEGI-TVIVSLHQVDLAREYADRIVGLKDGRIV-FDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 51/261 (19%), Positives = 104/261 (39%), Gaps = 6/261 (2%)
Query: 312 IFMSGFFALLKVLTLSAGPLLLNAFI-LVTEGKAGFKYEGYVLAITLFVAKILESLSQRQ 370
+ ++ +L T PLLL F+ + +G + LAI L +L+ L +
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 371 WYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQ 430
++ +G ++R L A+ ++ L L + +S GE+ + +T D +I +
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 431 IWTTSVQLCIALIILFHAVG-LATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERL 489
++ S+ + I+ G T+ L ++ + +L +A LAK K K A +
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 490 KACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPVLVST 549
E+L ++ +K + E + + K ++KA L + L+S
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKA----GIKKAITAGLSFGITQLISY 236
Query: 550 ATFGACYFLNVPLYASNVFTF 570
++ + L S +
Sbjct: 237 LSYALALWFGAYLVISGGLSV 257
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 3e-23
Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 15/202 (7%)
Query: 998 DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH 1057
++ LK I+ G + IVG GSGK++L+ AL +E G + V G
Sbjct: 16 ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------- 66
Query: 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVV 1117
+ Q+P + NGT+R N+ ++ +V+ C L + +G + +
Sbjct: 67 ----SIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIG 122
Query: 1118 EDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT-DMILQKTIRAEFADC-TVI 1175
E G N S GQ+Q L RA+ + I +LD+ +++D I + I + T I
Sbjct: 123 EKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRI 182
Query: 1176 TVAHRIPTVMDCTMVLAISDGK 1197
V H++ + ++ + +G+
Sbjct: 183 LVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 8e-23
Identities = 69/210 (32%), Positives = 103/210 (49%), Gaps = 22/210 (10%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-- 1059
VLKG+ G + I+G +GSGK+TL+ + L+ P G++L+DG DIS L +L
Sbjct: 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74
Query: 1060 -RSRFGIIPQDPTLFNG-TVRYNLD-PLSQHTDQEIWEVLAKCHLGEAVREKEN--GLDS 1114
R R G++ Q LF+ TV N+ PL +HT E+ E V EK GL
Sbjct: 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEI------REIVLEKLEAVGLRG 128
Query: 1115 LVVED--GSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDN-ATDMILQ--KTIRAEF 1169
ED + S G ++ L RAL +L+ DE TA +D A+ +I ++++ E
Sbjct: 129 --AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL 186
Query: 1170 ADCTVITVAHRIPTVMD-CTMVLAISDGKL 1198
T I V H + T + + DGK+
Sbjct: 187 -GLTSIMVTHDLDTAFAIADRIAVLYDGKI 215
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 1e-22
Identities = 52/249 (20%), Positives = 101/249 (40%), Gaps = 2/249 (0%)
Query: 690 NSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLF 749
+S + N + + S + L ++ + +G + L L LG R K LF LL +
Sbjct: 27 DSLIDGNGDERS-SLISLAILLIAVGVLQGLLLQGSFYLGERLGQRIRKRLFRALLRQIL 85
Query: 750 RAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLF 809
PMSF+D+ +G + SR+++D+S + + L + V+ W++
Sbjct: 86 GLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFFQSLATVVGGFIVMFYYGWKLTL 145
Query: 810 VSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAK 869
V + ++ L I L ++L R + + ES++G T++AF E+ +
Sbjct: 146 VLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSVAEESLSGIRTVKAFGREEYELER 205
Query: 870 NLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFC-MVLLPPGTFTPGFIGMALS 928
++ + + +S + A + L+ G + G + LS
Sbjct: 206 YDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALALWFGAYLVISGGLSVGTVFAFLS 265
Query: 929 YGLSLNSSL 937
GL L+ L
Sbjct: 266 LGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 2e-22
Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 41/259 (15%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
+L + Y + VL+ IS + E G ++G G+GK+TL+ A+ L++P+ G+I + G
Sbjct: 9 NLTVSY--GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGK 66
Query: 1050 DISKLGLHDLRSRFGIIPQ----DPTLFNGTV-------RY----NLDPLSQHTDQEIWE 1094
+ K R R G +PQ D + F TV RY L++ +++ E
Sbjct: 67 PVRK---RRKRLRIGYVPQKSSVDRS-FPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDE 122
Query: 1095 VLAKCHLG-EAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI 1153
L + +G E +R+++ + L S GQ+Q L RAL + +L+LDE +
Sbjct: 123 ALER--VGMEDLRDRQ--IGEL--------SGGQKQRVLLARALAQNPDLLLLDEPFTGV 170
Query: 1154 DNATDMILQKTIRAEFAD-CTVITVAHRIPTVMDCT---MVLA---ISDGKLAEYDEPMK 1206
D A + ++ + TV+ V H + VM + L I+ G E
Sbjct: 171 DVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTEEN 230
Query: 1207 LMKREGSLFGQLVREYWSH 1225
L K G + Y H
Sbjct: 231 LEKAFGGSLAHALAGYRHH 249
|
Length = 254 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 94.8 bits (237), Expect = 2e-22
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 50/218 (22%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
+++ +L RY L IS T E G G++G G+GKTTLI + L++P G+I
Sbjct: 1 IEVRNLSKRYG--KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1046 VDGIDISKLGLHDLRSRFGIIPQDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEA 1104
V G DI K +++ R G +P++P+L+ TVR NL
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 1105 VREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID-NATDMILQ- 1162
S G +Q L +ALL +L+LDE T+ +D + +
Sbjct: 96 ------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 1163 -KTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKL 1198
+ ++ E T++ +H + C V +++G++
Sbjct: 138 LRELKKE--GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 6e-22
Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 37/214 (17%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
DL + Y VL+ +S + G + IVG G+GK+TL+ A+ L++P G I V G
Sbjct: 4 DLTVSY--GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61
Query: 1050 DISKLGLHDLRSRFGIIPQ----DPTLFNGTV-------RYN----LDPLSQHTDQEIWE 1094
+ K R R G +PQ D F +V Y LS+ ++ E
Sbjct: 62 PLEK-----ERKRIGYVPQRRSIDRD-FPISVRDVVLMGLYGHKGLFRRLSKADKAKVDE 115
Query: 1095 VLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
L + L E + +++ + L S GQ+Q L RAL++ +L+LDE A +D
Sbjct: 116 ALERVGLSE-LADRQ--IGEL--------SGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164
Query: 1155 NATDMILQKTIRAEFAD--CTVITVAHRIPTVMD 1186
T + + +R E T++ V H + V++
Sbjct: 165 PKTQEDIYELLR-ELRREGMTILVVTHDLGLVLE 197
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 1e-21
Identities = 72/217 (33%), Positives = 104/217 (47%), Gaps = 27/217 (12%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL---GLHD 1058
LK +S + G GI+GR+G+GK+TLI + L P G +LVDG D++ L L
Sbjct: 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRK 79
Query: 1059 LRSRFGIIPQDPTLFNG-TVRYNLD-PLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLV 1116
R R G+I Q L + TV N+ PL EI V K + E V E L LV
Sbjct: 80 ARRRIGMIFQHFNLLSSRTVFENVALPL------EIAGV-PKAEIEERVLE----LLELV 128
Query: 1117 -VEDG-----SNWSMGQRQLFCLGRALLRRSRILVLDEATASID-NATDMILQ--KTIRA 1167
+ED + S GQ+Q + RAL ++L+ DEAT+++D T IL + I
Sbjct: 129 GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR 188
Query: 1168 EFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203
E T++ + H + V C V + G++ E
Sbjct: 189 EL-GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 1e-21
Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 30/232 (12%)
Query: 986 VDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043
+ + +L I Y + L +S E G +GIVG +GSGK+TL L L +P+ G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 1044 ILVDGIDISKLGLHDLRSR-FGIIPQDPTL-FNG--TVRYNL-DPLSQHT----DQEIWE 1094
IL+DG ++ R ++ QDP N TV L +PL H Q I E
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAE 123
Query: 1095 VLAKCHLGEAVREKE-NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI 1153
+L + L + ++ + L S GQRQ + RAL+ ++L+LDE T+++
Sbjct: 124 LLDQVGLPPSFLDRRPHEL-----------SGGQRQRIAIARALIPEPKLLILDEPTSAL 172
Query: 1154 DNATDM-ILQ--KTIRAEFADCTVITVAHRIPTVMD--CTMVLAISDGKLAE 1200
D + IL ++ E T + ++H + +++ C + + +G++ E
Sbjct: 173 DVSVQAQILNLLLELKKER-GLTYLFISHDL-ALVEHMCDRIAVMDNGQIVE 222
|
Length = 252 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 1e-21
Identities = 60/204 (29%), Positives = 90/204 (44%), Gaps = 48/204 (23%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH--DL 1059
VL +S E G + ++G +GSGK+TL+ + L EP G IL+DG D++ L L
Sbjct: 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPL 74
Query: 1060 RSRFGIIPQDPTLFNG-TVRYNLD-PLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVV 1117
R R G++ QD LF TV N+ LS G
Sbjct: 75 RRRIGMVFQDFALFPHLTVLENIALGLS----------------G--------------- 103
Query: 1118 EDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQ---KTIRAEFADCTV 1174
GQ+Q L RAL +L+LDE T+++D T ++ K+++A+ TV
Sbjct: 104 --------GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLG-ITV 154
Query: 1175 ITVAHRIPTVMD-CTMVLAISDGK 1197
+ V H + V+ + DGK
Sbjct: 155 VLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-21
Identities = 56/146 (38%), Positives = 89/146 (60%), Gaps = 3/146 (2%)
Query: 1042 GKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQH-TDQEIWEVLAKCH 1100
GKIL+DG+DI L DLR+ F I+ Q+P LFN ++ N+ + T +++
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAA 1336
Query: 1101 LGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMI 1160
+ E + N D+ V G + S GQ+Q + RALLR +IL+LDEAT+S+D+ ++ +
Sbjct: 1337 IDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396
Query: 1161 LQKTIR--AEFADCTVITVAHRIPTV 1184
++KTI + AD T+IT+AHRI ++
Sbjct: 1397 IEKTIVDIKDKADKTIITIAHRIASI 1422
|
Length = 1466 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-21
Identities = 133/592 (22%), Positives = 248/592 (41%), Gaps = 102/592 (17%)
Query: 685 GTILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQL 744
G I++N L NV + +I +LIG + S V+ + K+L +
Sbjct: 84 GVIMKNMNLGENVND-------IIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEF 136
Query: 745 LNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVD--LDVPFSLIFAVGATTNAYSNLGVLAV 802
L S+F F+D+ P ++ S + L V+ + F IF +A+ L + ++
Sbjct: 137 LKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTY---ASAFLGLYIWSL 193
Query: 803 VTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANH----LAESIAGAMTIR 858
L + I +F I + + +++N T L N+ + E++ G T+
Sbjct: 194 FKNARLTLCITCVFPLIYICG---VICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVV 250
Query: 859 AFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAF-----CMVLL 913
++ E K +L + S + AN + ++ +++S AF +++
Sbjct: 251 SYCGEKTILKK-FNLSEKLYSKY--ILKANFMESLHIGMINGFILASYAFGFWYGTRIII 307
Query: 914 -------PPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSE 966
P F G + +S L + S+ M + Y+ S+E N + +
Sbjct: 308 SDLSNQQPNNDFHGGSV---ISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINR 364
Query: 967 APEVVEDNRPPPNWPVVGKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGS 1024
P +VE+N + K+ +++ Y R D + K ++ T G VG +G
Sbjct: 365 KP-LVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVE-IYKDLNFTLTEGKTYAFVGESGC 422
Query: 1025 GKTTLIGALFRLVEPAGGKILV-DGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYN--- 1080
GK+T++ + RL +P G I++ D ++ + L RS+ G++ QDP LF+ +++ N
Sbjct: 423 GKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKY 482
Query: 1081 -------LDPLSQHTDQEIWE----------VLAKC--------------HLGEAVREKE 1109
L+ LS + +++ + AKC L E + +
Sbjct: 483 SLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQ 542
Query: 1110 NGLDSLVVE------------------------DGSNWSMGQRQLFCLGRALLRRSRILV 1145
DS VV+ + S S GQ+Q + RA++R +IL+
Sbjct: 543 TIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILI 602
Query: 1146 LDEATASIDNATDMILQKTIRAEFADCTVIT--VAHRIPTVMDCTMVLAISD 1195
LDEAT+S+DN ++ ++QKTI + IT +AHR+ T+ + +S+
Sbjct: 603 LDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 91.7 bits (229), Expect = 3e-21
Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 46/213 (21%)
Query: 992 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI 1051
+ VL +S + E G +GI+G G+GK+TL+ L L++P+ G+IL+DG D+
Sbjct: 4 NLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL 63
Query: 1052 SKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKC---HLGEAVREK 1108
+ L +L + +PQ L HL
Sbjct: 64 ASLSPKELARKIAYVPQ--------------------------ALELLGLAHL------A 91
Query: 1109 ENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR-- 1166
+ + L S G+RQ L RAL + IL+LDE T+ +D A + L + +R
Sbjct: 92 DRPFNEL--------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143
Query: 1167 AEFADCTVITVAHRI-PTVMDCTMVLAISDGKL 1198
A TV+ V H + V+ + DG++
Sbjct: 144 ARERGKTVVMVLHDLNLAARYADRVILLKDGRI 176
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 4e-21
Identities = 70/264 (26%), Positives = 108/264 (40%), Gaps = 37/264 (14%)
Query: 963 VPSEAPE--VVEDNRPPPNWPVVGKVDICDLQIRYRPDSPL---------VLKGISCTFE 1011
VP E + R P + V +L RY L + +S
Sbjct: 258 VPRLGDEKIIRLPRRGPLRAEPLLSVR--NLSKRYGSRKGLFVRERGEVKAVDDVSFDLR 315
Query: 1012 GGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGID--ISKLGLHDLRSRFGIIPQD 1069
G +G+VG +GSGK+TL L L+ P+ G I+ DG D ++ L LR R ++ QD
Sbjct: 316 EGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQD 375
Query: 1070 PTLF---NGTVRYNL-DPLSQHTD---QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSN 1122
P TV L +PL H E +A+ E V LD E
Sbjct: 376 PYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELL--ELVGLPPEFLDRYPHEL--- 430
Query: 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASID-----NATDMILQKTIRAEFADCTVITV 1177
S GQRQ + RAL ++L+LDE +++D +++ ++ E T + +
Sbjct: 431 -SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD--LQEEL-GLTYLFI 486
Query: 1178 AHRIPTVMD-CTMVLAISDGKLAE 1200
+H + V V + DG++ E
Sbjct: 487 SHDLAVVRYIADRVAVMYDGRIVE 510
|
Length = 539 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 33/221 (14%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
+++ L Y L +S T E G + ++G +G GKTTL+ + L P G+IL
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1046 VDGIDISKLGLHDLRSRFGIIPQDPTLF-NGTVRYNL--------DPLSQHTDQEIWEVL 1096
+DG D++ + R G++ QD LF + TV N+ P ++ + E+L
Sbjct: 59 IDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVR-ELL 115
Query: 1097 AKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA 1156
L + + L S GQ+Q L RAL R +L+LDE +++D
Sbjct: 116 ELVGLEGLLNRYPHEL-----------SGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 1157 TDMILQKTIRA--EFADCTVITVAHRIPTVMDCTMVLAISD 1195
L++ ++ T I V H D LA++D
Sbjct: 165 LREELREELKELQRELGITTIYVTH------DQEEALALAD 199
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 2e-20
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 11/77 (14%)
Query: 628 ISIKSASFSWE--ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
IS++ ASF+W+ E + T+++I+LEV G+ VAI G VGSGKS+LL+A+LGE+ G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 686 TIL---------QNSWL 693
++ Q W+
Sbjct: 61 SVSVPGSIAYVSQEPWI 77
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 2e-20
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 14/129 (10%)
Query: 1027 TTLIGALFRLVEPAGGKILVDGIDISKLG-LHDLRSRFGIIPQDPTLF-NGTVRYNLDP- 1083
+TL+ + L++P G IL+DG D + L LR R G++ QDP LF TVR NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1084 -LSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142
+ D E L + L + + E S GQ+Q + RALL++ +
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 1143 ILVLDEATA 1151
+L+LDE TA
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 2e-20
Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 26/214 (12%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-- 1059
LK ++ E G + IVG +GSGK+TL+ L L +P G++L++G D++KL +L
Sbjct: 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79
Query: 1060 --RSRFGIIPQDPTLF-NGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLV 1116
R + G + Q+ L + TV N+ E+ ++A G R E L+ L
Sbjct: 80 LRRKKIGFVFQNFNLLPDLTVLENV---------ELPLLIAGKSAGRRKRAAEELLEVLG 130
Query: 1117 VEDGSNW------SMGQRQLFCLGRALLRRSRILVLDEATASIDNAT-DMILQ--KTIRA 1167
+ED S GQ+Q + RAL+ +I++ DE T ++D+ T +L+ + +
Sbjct: 131 LEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK 190
Query: 1168 EFADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200
E T+I V H P + V+ + DGK+ E
Sbjct: 191 ER-GKTIIMVTHD-PELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 3e-20
Identities = 59/238 (24%), Positives = 103/238 (43%), Gaps = 36/238 (15%)
Query: 997 PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL-- 1054
P LK ++ G + I+G +G+GK+TL+ +L LV+P G+IL +G+ I+KL
Sbjct: 14 PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKG 73
Query: 1055 -GLHDLRSRFGIIPQDPTLFN----------------GTVRYNLDPLSQHTDQEIWEVLA 1097
L LR G+I Q L T R S+ + + L
Sbjct: 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALE 133
Query: 1098 KCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT 1157
+ + + ++ + L S GQ+Q + RAL+++ +I++ DE AS+D +
Sbjct: 134 RVGILDKAYQRASTL-----------SGGQQQRVAIARALVQQPKIILADEPVASLDPES 182
Query: 1158 D---MILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211
M + K I E TVI H++ ++ + G++ +D P + E
Sbjct: 183 AKKVMDILKDINQED-GITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASELTDE 238
|
Length = 258 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 4e-20
Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 31/214 (14%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTL---IGALFRLVEPAGGKILVDGIDISKLGLHD 1058
LKG+S + E G + IVG +GSGK+TL +G L R P G++ VDG DISKL +
Sbjct: 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSEKE 75
Query: 1059 L----RSRFGIIPQDPTLFNG-TVRYNLD-PL------SQHTDQEIWEVLAKCHLGEAVR 1106
L R G + Q L T N++ PL + + E+L + LG+ +
Sbjct: 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN 135
Query: 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR 1166
+ L S GQ+Q + RAL +I++ DE T ++D+ T + + +R
Sbjct: 136 HYPSEL-----------SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLR 184
Query: 1167 --AEFADCTVITVAHRIPTVMDCTMVLAISDGKL 1198
+ A T++ V H ++ + DGK+
Sbjct: 185 ELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 3e-19
Identities = 102/432 (23%), Positives = 177/432 (40%), Gaps = 39/432 (9%)
Query: 310 RDIFMSGFFALLKVLTLSAGPLLLNAFI---LVTEGKAGFKYEGYVLAITLFVAKILESL 366
++ ++ L++L L A PL I L ++ L + +L L
Sbjct: 157 FEVLLASLL--LQLLAL-ATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLL 213
Query: 367 SQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF 426
R + +G ++ L+ ++ LRL + S GEI++ V + +I EF
Sbjct: 214 --RTYLIA--HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREF-- 266
Query: 427 WFHQ-----IWTTSVQLCIALIILFHAVGLA--TIAALVVIMITVLCNAPLAKLQHKFQT 479
I L ++ ++ L +AA+ + ++ L PL L+ K +
Sbjct: 267 -LTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPL--LRRKTR- 322
Query: 480 KLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFL 539
KL+ E+ E + ++ +K A E F++ + R + + K
Sbjct: 323 KLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWD-NRLAKQV-NIGFKTEKLALILN 380
Query: 540 FWSSPV--LVSTAT--FGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQAN 595
S + L S FGA L L + F PI + + F QA
Sbjct: 381 TIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAK 440
Query: 596 VAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRP 655
VA R+ + L+ P Q + + ++ + I ++ SF + P + ++SLE+ P
Sbjct: 441 VALERLGDILDTPPEQEGD-KTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPP 498
Query: 656 GQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVENPNVSTLRLIVVYLLIG 715
G+KVAI G GSGKSTLL +LG QG IL + ++ + ++++LR V Y+L
Sbjct: 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV---DLNDIDLASLRRQVGYVL-- 553
Query: 716 FVSTLFLMSRSL 727
FL S S+
Sbjct: 554 --QDPFLFSGSI 563
|
Length = 709 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 5e-19
Identities = 60/233 (25%), Positives = 92/233 (39%), Gaps = 25/233 (10%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
+ I +L Y+ + + +S G G++G G+GKTT + L + P G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1046 VDGIDISKLGLHDLRSRFGIIPQDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEA 1104
++G I R G PQ LF+ TVR +L + L E
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHL---------RFYARLKGLPKSEI 110
Query: 1105 VREKENGLDSLVVEDGSNW-----SMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM 1159
E E L L + D +N S G ++ L AL+ +L+LDE T+ +D A+
Sbjct: 111 KEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRR 170
Query: 1160 ILQKTIRAEFADCTVITVAHRIPTVMD-----CTMVLAISDGKLAEYDEPMKL 1207
+ I ++I H MD C + +SDGKL P +L
Sbjct: 171 AIWDLILEVRKGRSIILTTHS----MDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 86.7 bits (216), Expect = 5e-19
Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 50/215 (23%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
+L G+S T G + ++GR G+GKTTL+ + L+ P G I DG DI+ L H+ R+
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE-RA 73
Query: 1062 RFGI--IPQDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSL--V 1116
R GI +P+ +F TV NL LG R + L V
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENL------------------LLGAYARRRAKRKARLERV 115
Query: 1117 VE-----------DGSNWSMGQRQLFCLGRALLRRSRILVLDEATAS-----IDNATDMI 1160
E S G++Q+ + RAL+ R ++L+LDE + ++ + I
Sbjct: 116 YELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI 175
Query: 1161 LQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISD 1195
+ +R E T++ V L I+D
Sbjct: 176 --RELRDE--GVTILLVEQNA------RFALEIAD 200
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 1e-18
Identities = 59/235 (25%), Positives = 110/235 (46%), Gaps = 26/235 (11%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
++ Y LK +S G + I+G GSGK+T+ L L++P G+I +DGI
Sbjct: 12 NVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGI 71
Query: 1050 DISKLGLHDLRSRFGIIPQDP-TLFNG-TVR---------YNLDPLSQHTDQEIWEVLAK 1098
ISK L ++R + GII Q+P F G TV + P +++ +++
Sbjct: 72 TISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPP------KKMKDIID- 124
Query: 1099 CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158
L + V G++ + ++ N S GQ+Q + L I++ DE+T+ +D
Sbjct: 125 -DLAKKV-----GMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGK 178
Query: 1159 MILQKTIR--AEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKRE 1211
++K + + T+I++ H + + V+ S+GKL +P +++ +
Sbjct: 179 REIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233
|
Length = 271 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 2e-18
Identities = 65/241 (26%), Positives = 101/241 (41%), Gaps = 36/241 (14%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
+L Y P+ LK I+ G + I+G +G+GK+TL+ + RLVEP+ G IL++G
Sbjct: 6 NLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGT 64
Query: 1050 DISKLGLHDLRS---RFGIIPQDPTL----------------FNGTVRYNLDPLSQHTDQ 1090
DI+KL LR R G+I Q L + T R L S+ +
Sbjct: 65 DITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKE 124
Query: 1091 EIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEAT 1150
L + GL + S GQ+Q + RAL ++ +++ DE
Sbjct: 125 RALSALERV-----------GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173
Query: 1151 ASIDNATD---MILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206
AS+D T M K I E TVI H++ ++ + G++ P +
Sbjct: 174 ASLDPKTSKQVMDYLKRINKEDG-ITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSE 232
Query: 1207 L 1207
L
Sbjct: 233 L 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 19/203 (9%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VL IS + G G +G G+GKTT + + L++P G+I DG K +
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEALR 72
Query: 1062 RFGIIPQDPTLF-NGTVRYNL---DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVV 1117
R G + + P + N T R NL L + I EVL L ++ ++K
Sbjct: 73 RIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV-------- 124
Query: 1118 EDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFAD-CTVIT 1176
+S+G +Q + ALL +L+LDE T +D L++ I + TV+
Sbjct: 125 ---KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLI 181
Query: 1177 VAHRIPTVMD-CTMVLAISDGKL 1198
+H + + + I+ GKL
Sbjct: 182 SSHLLSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 2e-18
Identities = 67/224 (29%), Positives = 104/224 (46%), Gaps = 28/224 (12%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL---GLHD 1058
+L G+ G + I+G +GSGK+TL+ + L+ P G+IL+DG DI +L L++
Sbjct: 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82
Query: 1059 LRSRFGIIPQDPTLFNG-TVRYNLD-PLSQHTD--QEIWEVLAKCHLGEAVREKENGLDS 1114
+R R G++ Q LF+ TV N+ PL +HT + + L L E V + D
Sbjct: 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKL-ELVGLRGAAADL 141
Query: 1115 LVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID----NATDMILQKTIRAEFA 1170
E S G R+ L RA+ +L LDE T+ +D D L + +
Sbjct: 142 YPSE----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDE-LIRELNDAL- 195
Query: 1171 DCTVITVAHRIPTVMDCT-MVLAISDGK---------LAEYDEP 1204
TVI V H + +++ V ++DGK L D+P
Sbjct: 196 GLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDP 239
|
Length = 263 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 57/220 (25%), Positives = 90/220 (40%), Gaps = 24/220 (10%)
Query: 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILV 1046
I ++ Y+ +L +S G I + G+ G+GKTTL L L++ + G IL+
Sbjct: 1 RIENISFSYK-KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59
Query: 1047 DGIDISKLGLHDLRSRFGIIPQDPT--LFNGTV----RYNLDPLSQHTDQEIWEVLAKCH 1100
+G I + R G + QD LF +V L L +++ VL
Sbjct: 60 NGKPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDA-GNEQAETVLKDLD 115
Query: 1101 LGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMI 1160
L KE SL S GQ+Q + ALL +L+ DE T+ +D
Sbjct: 116 LYA---LKERHPLSL--------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMER 164
Query: 1161 LQKTIRAEFADCTVITVA-HRIPTVMD-CTMVLAISDGKL 1198
+ + IR A + V H + C VL +++G +
Sbjct: 165 VGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.6 bits (213), Expect = 2e-18
Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 20/159 (12%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L+G+S E G + ++GR G+GKTTL+ + LV P G+I+ DG DI+ L H+ R+
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE-RA 76
Query: 1062 RFGI--IPQDPTLF-NGTVRYNL------DPLSQHTDQEIWEVLAKCHLGEAVREKENGL 1112
R GI +P+ +F TV NL + ++++ EV L ++E+ N
Sbjct: 77 RLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYE---LFPRLKERRNQR 133
Query: 1113 DSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATA 1151
S G++Q+ + RAL+ R ++L+LDE +
Sbjct: 134 -------AGTLSGGEQQMLAIARALMSRPKLLLLDEPSE 165
|
Length = 237 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 2e-18
Identities = 59/197 (29%), Positives = 93/197 (47%), Gaps = 23/197 (11%)
Query: 997 PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG--IDISKL 1054
P P VLKG++ E G + ++G G+GK+TL+ L L+ P G +L+DG +D S+
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 1055 GLHDLRSRFGIIPQDP--TLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEA-----VRE 1107
GL + R R G++ QDP LF V DQ++ L EA VRE
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADV-----------DQDVAFGPLNLGLSEAEVERRVRE 110
Query: 1108 KENGLDSLVVEDG--SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA-TDMILQKT 1164
+ + + + S G+++ + A+ R +L+LDE TA +D A + +L
Sbjct: 111 ALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAIL 170
Query: 1165 IRAEFADCTVITVAHRI 1181
R TV+ H +
Sbjct: 171 RRLRAEGMTVVISTHDV 187
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 2e-18
Identities = 68/206 (33%), Positives = 104/206 (50%), Gaps = 35/206 (16%)
Query: 995 YRPDSPL---VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI 1051
Y +P L ++ E G +G++G TGSGK+TLI L L++P GKI++DG+DI
Sbjct: 12 YMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI 71
Query: 1052 S--KLGLHDLRSRFGIIPQDP--TLFNGTVR-------YNLDPLSQHTDQEIWEVLAKCH 1100
+ K+ L D+R + G++ Q P LF T+ NL LS ++EI
Sbjct: 72 TDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLG-LS---EEEI-------- 119
Query: 1101 LGEAVREKEN--GLDSLVVEDGSNW--SMGQRQLFCLGRALLRRSRILVLDEATASID-N 1155
V+ N GLD +D S + S GQ++ + + +IL+LDE TA +D
Sbjct: 120 -ENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178
Query: 1156 ATDMILQ--KTIRAEFADCTVITVAH 1179
D IL K + E+ + T+I V+H
Sbjct: 179 GRDEILNKIKELHKEY-NMTIILVSH 203
|
Length = 287 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 9e-18
Identities = 66/242 (27%), Positives = 106/242 (43%), Gaps = 35/242 (14%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
+ ++ T E G + ++G +GSGKTT + + RL+EP G+IL+DG DIS L +LR
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75
Query: 1062 RFGIIPQDPTLF-NGTVRYN-------LDPLSQHTDQEIWEVLAKCHLGEAVREKENGLD 1113
+ G + Q LF + TV N L + + E+L L +
Sbjct: 76 KIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPS--------- 126
Query: 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQ---KTIRAEFA 1170
S GQ+Q + RAL IL++DE ++D T LQ K ++ E
Sbjct: 127 EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL- 185
Query: 1171 DCTVITVAHRIPTVMDCTMVLA-----ISDGKLAEYDEPMKLMKRE-----GSLFGQLVR 1220
T++ V H +D + LA + G++ +YD P +++ FG+ R
Sbjct: 186 GKTIVFVTHD----IDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESER 241
Query: 1221 EY 1222
Sbjct: 242 GL 243
|
Length = 309 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-17
Identities = 115/531 (21%), Positives = 197/531 (37%), Gaps = 98/531 (18%)
Query: 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLG-- 762
+ + V+ +I + L ++++ + +L +R + L LL+ P +Y G
Sbjct: 86 WQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWL-DPRRYYRLAQAGGI 144
Query: 763 --------------RVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVL 808
R + + DLS L SLI G +S G LA T
Sbjct: 145 GLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTG---ILWSLSGGLAF-TIGGF 200
Query: 809 FVSIPVIFLAIRLQRYYFATA--------KELMRLNGTTKSLVAN----HL-----AESI 851
IP + + Y +A + L+RLN + L A+ + AE+I
Sbjct: 201 SFGIPGYMVWAVI--IYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAI 258
Query: 852 AGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMV 911
A R + E R D + N + R + + V
Sbjct: 259 ALY---RGEKVERRRLDDRFDAVL-----------GNWRRLVRAQIRLTWFQLGYGWLSV 304
Query: 912 LLPPGTFTPGFIGMALSYG-LSLNSSLVMSIQNQC--------TLANYIISVERLNQYMH 962
+LP P + +++G L + + +A++ ++ RL ++
Sbjct: 305 VLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQ 364
Query: 963 VPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYR------PDSPLVLKGISCTFEGGHKI 1016
A + +P + D D I PD +L ++ G ++
Sbjct: 365 ALEAAQM--DTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERL 422
Query: 1017 GIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGT 1076
I G +G+GKT+L+ AL L G+I + D F +PQ P L GT
Sbjct: 423 LITGESGAGKTSLLRALAGLWPWGSGRISMPA---------DSALLF--LPQRPYLPQGT 471
Query: 1077 VRYNL---DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSM----GQRQ 1129
+R L + +D E+ VL K LG+ + L ++ W G++Q
Sbjct: 472 LREALCYPNAAPDFSDAELVAVLHKVGLGDLA-------ERL--DEEDRWDRVLSGGEQQ 522
Query: 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHR 1180
R LL + + + LDEAT+++D T+ L + ++ E D TVI+V HR
Sbjct: 523 RLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 3e-17
Identities = 64/247 (25%), Positives = 117/247 (47%), Gaps = 38/247 (15%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
+++ +++ + S VLK ++ E G + ++G +G GK+TL+ + L EP G+IL
Sbjct: 4 LELKNVRKSF--GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 1046 VDGIDISKLGLHDLRSRFGIIPQDPTLF-NGTVRYNLD-PL------SQHTDQEIWEVLA 1097
+DG D++ L + ++ Q+ L+ + TV N+ L D+ + EV
Sbjct: 62 IDGRDVTDL--PPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK 119
Query: 1098 KCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT 1157
L + K L S GQRQ L RAL+R+ ++ +LDE +++D
Sbjct: 120 LLGLEHLLNRKPLQL-----------SGGQRQRVALARALVRKPKVFLLDEPLSNLDAK- 167
Query: 1158 DMILQKTIRAEFAD------CTVITVAHRIPTVMDCTM---VLAISDGKLAEYDEPMKLM 1208
L+ +R+E T I V H M T+ ++ ++DG++ + P++L
Sbjct: 168 ---LRVLMRSEIKKLHERLGTTTIYVTHDQVEAM--TLADRIVVMNDGRIQQVGTPLELY 222
Query: 1209 KREGSLF 1215
+R +LF
Sbjct: 223 ERPANLF 229
|
Length = 338 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 81.3 bits (202), Expect = 6e-17
Identities = 61/213 (28%), Positives = 91/213 (42%), Gaps = 17/213 (7%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L +S + G G++G G+GKTTL + + P G +L DG DI+ L H+ +
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHE-IA 73
Query: 1062 RFGIIP--QDPTLFNG-TVRYNLD-PLSQHTDQEIWEVLAKCHLGEAVREKEN-----GL 1112
R GI Q P LF TV N+ T + A+ EA E GL
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
Query: 1113 DSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATA--SIDNATDMI-LQKTIRAEF 1169
L S GQ++ + RAL ++L+LDE A + + ++ L + +R
Sbjct: 134 ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER- 192
Query: 1170 ADCTVITVAHRIPTVMD-CTMVLAISDG-KLAE 1200
TV+ V H + VM V + G +AE
Sbjct: 193 -GITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 9e-17
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 20/181 (11%)
Query: 992 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI 1051
Q+ Y +L IS + G I I G +G GK+TL+ + L+ P G +L +G D+
Sbjct: 8 QVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV 67
Query: 1052 SKLGLHDLRSRFGIIPQDPTLFNGTVRYNLD-PL---SQHTDQEIW-EVLAKCHLGEAVR 1106
S L R + Q P LF TV NL P ++ D+ ++LA+ L +++
Sbjct: 68 STLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSIL 127
Query: 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID-----NATDMIL 1161
K + S G++Q L R L +IL+LDE T+++D N +MI
Sbjct: 128 TKN----------ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIH 177
Query: 1162 Q 1162
+
Sbjct: 178 R 178
|
Length = 223 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 2e-16
Identities = 64/256 (25%), Positives = 109/256 (42%), Gaps = 47/256 (18%)
Query: 986 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP---- 1039
+++ +L + + D ++ +S E G +GIVG +GSGK+TL AL L+
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 1040 AGGKILVDGIDISKLGLHDLRS----RFGIIPQDP-TLFNGTVRYNLDPLSQHTDQEIWE 1094
G++++DG D+ L ++R R +I QDP T N P+ DQ I E
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLN--------PVMTIGDQ-IRE 116
Query: 1095 VLAKCHLG---EAVREKENGLDSLVVEDGSNWSM-------GQRQLFCLGRALLRRSRIL 1144
L G EA + L+ + + D G RQ + AL + ++L
Sbjct: 117 ALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLL 176
Query: 1145 VLDEATASIDNAT-DMILQ--KTIRAEFADCTVITVAHRIPTVMDCTMVLAISD------ 1195
+ DE T ++D T IL K ++ E V+ + H D +V ++D
Sbjct: 177 IADEPTTALDVTTQAQILDLLKDLQREL-GMAVLFITH------DLGVVAELADRVVVMY 229
Query: 1196 -GKLAEYDEPMKLMKR 1210
G++ E +++
Sbjct: 230 KGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 2e-16
Identities = 57/238 (23%), Positives = 96/238 (40%), Gaps = 23/238 (9%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
+++ DL Y ++ +S E G G++G G+GKTTL+ + L+ P GK+
Sbjct: 2 LEVTDLTKSY-GSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 1046 VDGIDISKLGLHDLRSRFGIIPQDPTLFNG-TVRYNL-------DPLSQHTDQEIWEVLA 1097
+DG+D + +R + G++ + L+ T R NL + I E+
Sbjct: 61 IDGVDTVRDPS-FVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS- 118
Query: 1098 KCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT 1157
K L + +S G +Q + RAL+ ILVLDE T+ +D T
Sbjct: 119 ----------KRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT 168
Query: 1158 DMILQKTIRAEFADC-TVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGS 1213
I+ + VI +H + V C V+ + G++ L R
Sbjct: 169 RRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVL 226
|
Length = 245 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 3e-16
Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 27/182 (14%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
+D+ DL + D+ VL G+ + G +G+VG G+GKTTL+ A+ + P G +L
Sbjct: 4 IDVSDLSVE-FGDTT-VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61
Query: 1046 VDGIDISKLGLHDLRSRFGIIPQDPTL-FNGTVRYNLDPLSQHTDQEIWEVLAKCHLGE- 1103
V G D+ L R +PQD +L F VR ++ E+ H
Sbjct: 62 VAGDDVEALSARAASRRVASVPQDTSLSFEFDVR------------QVVEMGRTPHRSRF 109
Query: 1104 ---------AVREKEN--GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATAS 1152
AV G+ ++ S G+RQ L RAL + + +L+LDE TAS
Sbjct: 110 DTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTAS 169
Query: 1153 ID 1154
+D
Sbjct: 170 LD 171
|
Length = 402 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 3e-16
Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 17/161 (10%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS-KLGLHDLR 1060
VLKGIS + E G + I+G +GSGK+TL+ L L EP G I VDG D+ K + LR
Sbjct: 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 1061 SRFGIIPQDPTLF-NGTVRYN--LDPLS-QHTDQEIWEVLAKCHLGEAVR--EKENGL-D 1113
+ G++ Q LF + TV N L P+ + + A L E V +K +
Sbjct: 77 RKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKAL-ELLEKVGLADKADAYPA 135
Query: 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
L S GQ+Q + RAL ++++ DE T+++D
Sbjct: 136 QL--------SGGQQQRVAIARALAMDPKVMLFDEPTSALD 168
|
Length = 240 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 9e-16
Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 22/164 (13%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI--SKLGLHDL 1059
VLKGI T + G + I+G +GSGK+TL+ + L EP G I++DG+ + K +++L
Sbjct: 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74
Query: 1060 RSRFGIIPQDPTLF-NGTVRYN--LDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSL 1115
R + G++ Q LF + TV N L P+ + + EA L+ +
Sbjct: 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKA-----------EAEERALELLEKV 123
Query: 1116 VVEDGSNW-----SMGQRQLFCLGRALLRRSRILVLDEATASID 1154
+ D ++ S GQ+Q + RAL ++++ DE T+++D
Sbjct: 124 GLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 1e-15
Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 29/226 (12%)
Query: 994 RYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK 1053
Y P L+ +S G + + G +G+GK+TL+ ++ P GKILV+G D+S+
Sbjct: 10 AY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSR 68
Query: 1054 LGLHD---LRSRFGIIPQDPTLF-NGTVRYNLD-PL------SQHTDQEIWEVLAKCHLG 1102
L + LR + G++ QD L + TV N+ PL + + + EVL L
Sbjct: 69 LKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK 128
Query: 1103 EAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD---M 1159
R + L S G++Q + RA++ + +L+ DE T ++D M
Sbjct: 129 HKARALPSQL-----------SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM 177
Query: 1160 ILQKTIRAEFADCTVITVAHRIPTVMDCTM-VLAISDGKLAEYDEP 1204
L + I TV+ H + V VLA+ DG+L +
Sbjct: 178 RLFEEINR--LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221
|
Length = 223 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 64/248 (25%), Positives = 104/248 (41%), Gaps = 40/248 (16%)
Query: 994 RYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK 1053
RY V ++ G + ++G +GSGKTT + + RL+EP G+I +DG DI +
Sbjct: 9 RYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIRE 67
Query: 1054 LGLHDLRSRFGIIPQDPTLF-NGTVRYN------LDPLSQHT-DQEIWEVLAKCHLGEAV 1105
+LR + G + Q LF + TV N L + + E+LA L A
Sbjct: 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA- 126
Query: 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI 1165
S GQ+Q + RAL +L++DE ++D T LQ+
Sbjct: 127 --------EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQE-- 176
Query: 1166 RAEFADC------TVITVAHRIPTVMDCTMVLA-----ISDGKLAEYDEPMKLMKREGSL 1214
EF T++ V H I D LA + +G++ + P ++++ +
Sbjct: 177 --EFKRLQQELGKTIVFVTHDI----DEAFRLADRIAIMKNGEIVQVGTPDEILRSPAND 230
Query: 1215 FGQLVREY 1222
F V E+
Sbjct: 231 F---VAEF 235
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 66/222 (29%), Positives = 104/222 (46%), Gaps = 28/222 (12%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
LK +S E G I+G TGSGK+ L+ + ++P GKIL++G DI+ L +
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKR 71
Query: 1062 RFGIIPQDPTLF-NGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVRE--KENGLDSLVVE 1118
+PQ+ LF + TV N+ + + E+ K V E + G+D L+
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERK------VLEIAEMLGIDHLLNR 125
Query: 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD---MILQKTIRAEFADCTVI 1175
S G++Q + RAL+ +IL+LDE +++D T K IR EF TV+
Sbjct: 126 KPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF-GVTVL 184
Query: 1176 TVAHRIPTVMDCTMVLAISD-------GKLAEYDEPMKLMKR 1210
V H D A++D GKL + +P ++ K+
Sbjct: 185 HVTH------DFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 28/224 (12%)
Query: 990 DLQIRYRPDSPLV--LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD 1047
L R+R V + G+S T + G G++G G+GKTT + L L+EP G VD
Sbjct: 6 ALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVD 65
Query: 1048 GIDISKLGLHDLRSRFGIIPQDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVR 1106
G D+ K + R R G + L++ T R NL E A + G
Sbjct: 66 GFDVVKEPA-EARRRLGFVSDSTGLYDRLTARENL------------EYFAGLY-GLKGD 111
Query: 1107 EKENGLDSLV----VED-----GSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT 1157
E L+ L +E+ +S G RQ + RAL+ +L+LDE T +D
Sbjct: 112 ELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMA 171
Query: 1158 DMILQKTIRA-EFADCTVITVAHRIPTVMD-CTMVLAISDGKLA 1199
L++ IR ++ H + V C V+ + G++
Sbjct: 172 TRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 63/257 (24%), Positives = 103/257 (40%), Gaps = 33/257 (12%)
Query: 992 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI 1051
+ VL+ I+ + E G + I+G +G GK+TL+ + L +P G++L+DG +
Sbjct: 8 GVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV 67
Query: 1052 SKLGLHDLRSRFGIIPQDPTLFNG-TVRYN------LDPLSQHTDQEI-WEVLAKCHLGE 1103
+ G G + Q+ L TV N L S+ +E E+L L
Sbjct: 68 TGPG-----PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAG 122
Query: 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQK 1163
+ + L S G RQ + RAL R ++L+LDE ++D T LQ
Sbjct: 123 FEDKYPHQL-----------SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQD 171
Query: 1164 TIRAEFAD--CTVITVAHRIP-TVMDCTMVLAISDG-----KLAEYDEPMKLMKREGSLF 1215
+ + + TV+ V H + V V+ +S+ + E D P + R F
Sbjct: 172 ELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLP-RPRIRGDPEF 230
Query: 1216 GQLVREYWSHLHSAESH 1232
+L E L
Sbjct: 231 LELREELLEELREEHVK 247
|
Length = 248 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 2e-15
Identities = 66/215 (30%), Positives = 103/215 (47%), Gaps = 27/215 (12%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL--- 1059
L +S G G++G +G+GK+TLI + L P G ++VDG D++ L +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 1060 RSRFGIIPQDPTLFNG-TVRYNLD-PLS------QHTDQEIWEVLAKCHLGEAVREKENG 1111
R + G+I Q L + TV N+ PL +++ E+LA LG +K +
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG----DKHDS 136
Query: 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD---MILQKTIRAE 1168
SN S GQ+Q + RAL ++L+ DEAT+++D AT + L K I
Sbjct: 137 YP-------SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRR 189
Query: 1169 FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202
T++ + H + V C V IS+G+L E
Sbjct: 190 L-GLTILLITHEMDVVKRICDCVAVISNGELIEQG 223
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 58/221 (26%), Positives = 106/221 (47%), Gaps = 30/221 (13%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDI--SKL 1054
LK I+ ++G +G GK+TL+ L R+ + G++L+DG +I K+
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 1055 GLHDLRSRFGIIPQDPTLFNGTVRYNLD---PLSQHTDQEIWEV----LAKCHLGEAVRE 1107
+ +LR R G++ Q P F ++ N+ L D+E+ E+ L K L + V++
Sbjct: 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD 141
Query: 1108 K--ENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI 1165
+ ++ L L S GQ+Q C+ RAL + +L++DE T+++D + + +++ I
Sbjct: 142 RLHKSAL-GL--------SGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELI 192
Query: 1166 RAEFADCTVITVAHRIPT---VMDCTMVLAISDGKLAEYDE 1203
T++ V H + V D T G+L E+
Sbjct: 193 TELKKKYTIVIVTHNMQQAARVSDYTAFFY--LGELVEFGP 231
|
Length = 253 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 61/224 (27%), Positives = 100/224 (44%), Gaps = 27/224 (12%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDI--SKL 1054
LK I+ ++G +G GK+TL+ +L R+ + GK+L DG DI K+
Sbjct: 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75
Query: 1055 GLHDLRSRFGIIPQDPTLFNGTVRYN--LDPLSQHTDQEIWEVLAKCHLGEAVRE--KEN 1110
+ +LR R G++ Q P F ++ N P + + K L E V E K+
Sbjct: 76 DVVELRRRVGMVFQKPNPFPMSIYDNIAYGP-------RLHGIKDKKELDEIVEESLKKA 128
Query: 1111 GLDSLVVED----GSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR 1166
L V + S GQ+Q C+ RAL +L+LDE T+++D +++ I+
Sbjct: 129 ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQ 188
Query: 1167 AEFADCTVITVAHRIPT---VMDCTMVLAISDGKLAEYDEPMKL 1207
T++ V H + + D T DG+L EY ++
Sbjct: 189 ELKKKYTIVIVTHNMQQAARISDRTAFFY--DGELVEYGPTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 3e-15
Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
V+ +S G +G++G G+GKTT + LV P GKIL+D DI+KL +H R+
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH-KRA 77
Query: 1062 RFGI--IPQDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVE 1118
R GI +PQ+ ++F TV N+ + + ++++ + K L + +E + L
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALL--EEFHITHLRDS 135
Query: 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
+ S G+R+ + RAL + ++LDE A +D
Sbjct: 136 KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
|
Length = 243 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 9e-15
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 36/207 (17%)
Query: 997 PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL 1056
P L G+S G + ++G G+GK+TL+ A+ ++P G+IL+DG+D++K +
Sbjct: 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75
Query: 1057 HDLRSRFGIIPQDP---TLFNGTVRYNL--------------DPLSQHTDQEIWEVLAKC 1099
+ + QDP T T+ NL +
Sbjct: 76 AKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFR------- 128
Query: 1100 HLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID-NATD 1158
E + GL++ + + S GQRQ L A L +IL+LDE TA++D +
Sbjct: 129 ---ERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAE 185
Query: 1159 MILQKTIRAEFADCTVITVAHRIPTVM 1185
+++ T + I H++ T+M
Sbjct: 186 FVMELTAK--------IVEEHKLTTLM 204
|
Length = 263 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 72.8 bits (180), Expect = 1e-14
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I K+ SFS+ KP ++++SL ++PG+KVAI G GSGKSTLL +L T G I
Sbjct: 1 IEFKNVSFSYP-GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 688 LQNSWLAANVENPNVSTLRLIVVYL 712
L + ++ + ++ +LR + Y+
Sbjct: 60 LIDG---VDLRDLDLESLRKNIAYV 81
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 60/228 (26%), Positives = 95/228 (41%), Gaps = 31/228 (13%)
Query: 995 YRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL 1054
+ ++G+S G G++G G+GKTT I L L++P G+ V G D+ +
Sbjct: 8 KKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE 67
Query: 1055 GLHDLRSRFGIIPQDPTLFNG-TVRYNLDPL-------SQHTDQEIWEVLAKCHLGEAVR 1106
++R R GI+ QD ++ + T NL + I E+L L EA
Sbjct: 68 P-REVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAA- 125
Query: 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR 1166
D LV +S G R+ + R+L+ R +L LDE T +D T + + I
Sbjct: 126 ------DRLV----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIE 175
Query: 1167 A--EFADCTVITVAHRIPTVMD-----CTMVLAISDGKLAEYDEPMKL 1207
E T++ H M+ C V I G++ P +L
Sbjct: 176 KLKEEFGMTILLTTH----YMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 1e-14
Identities = 53/208 (25%), Positives = 88/208 (42%), Gaps = 50/208 (24%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGAL--FRLVEPAGGKILVDGIDISKLGLHDL 1059
+LK +S + G I+G +G+GK+TL+ AL R G++L++G + K
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSF 80
Query: 1060 RSRFGIIPQD----PTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSL 1115
R G +PQD PTL TVR L AK GL
Sbjct: 81 RKIIGYVPQDDILHPTL---TVRETLM------------FAAKL----------RGL--- 112
Query: 1116 VVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFAD--CT 1173
S G+R+ + L+ +L LDE T+ +D+++ + + +R AD T
Sbjct: 113 --------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRR-LADTGRT 163
Query: 1174 VITVAHRIPTVM--DCTMVLAISDGKLA 1199
+I H+ + + +L +S G++
Sbjct: 164 IICSIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 60/238 (25%), Positives = 112/238 (47%), Gaps = 16/238 (6%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
+ + + RY + LK +S + G + IVG GSGK+TL L L+ P G I
Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 1045 LVDGIDISKLGLHDLRSRFGIIPQDP-TLFNGT-----VRYNLDPLSQHTDQEIWEVLAK 1098
V G+ +S+ + D+R + G++ Q+P F G V + L+ + ++ + V
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERV--- 121
Query: 1099 CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158
+A+R+ G++ + + S GQ+Q + L + I++LDEAT+ +D
Sbjct: 122 ---DQALRQV--GMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGR 176
Query: 1159 MILQKTIR--AEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSL 1214
+ +T+R E TV+++ H + V+ ++ G++ E P ++ K L
Sbjct: 177 REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGHML 234
|
Length = 279 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 1e-14
Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 40/226 (17%)
Query: 1006 ISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI----SKLGLHDLRS 1061
T G I GR+GSGKTTLI + L P G+I+++G + + L +
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 1062 RFGIIPQDPTLF-NGTVRYNLD--------PLSQHTDQEIWEVLAKCHLGEAVREKENGL 1112
R G + Q+ LF + +VR NL + + + + E+L G+
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELL--------------GI 121
Query: 1113 DSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI------- 1165
L+ S G++Q +GRALL R+L++DE A++ D + I
Sbjct: 122 GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL----DDPRKYEILPYLERL 177
Query: 1166 RAEFADCTVITVAHRIPTVMDCT-MVLAISDGKLAEYDEPMKLMKR 1210
AEF ++ V+H + V+ V+ + DG++A ++
Sbjct: 178 HAEF-GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 14/184 (7%)
Query: 988 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD 1047
+L RY V+ G+S + + G +G++G G+GKTT + LV+P GKIL+D
Sbjct: 3 AENLSKRYG--KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 1048 GIDISKLGLHDLRSRFGII--PQDPTLFNG-TVRYNLDPL--SQHTDQEIWEVLAKCHLG 1102
G DI+KL +H R+R GI PQ+ ++F TV N+ + + ++ E + L
Sbjct: 61 GQDITKLPMHK-RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLE 119
Query: 1103 EAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQ 1162
E + L S+ S G+R+ + RAL + L+LDE A +D +Q
Sbjct: 120 EF------HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173
Query: 1163 KTIR 1166
K I+
Sbjct: 174 KIIK 177
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-14
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL------G 1055
+ +G+S T G + + G G GKTTL+ L L+ P G++ +G +++
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74
Query: 1056 LHDLRSRFGIIPQDPTLFNGTVRYNLD---PLSQHTDQEIWEVLAKCHLGEAVREKENGL 1112
+ L G+ P L + NL + + I + LA L G
Sbjct: 75 ILYLGHLPGL---KPEL---SALENLHFWAAIHGGAQRTIEDALAAVGL--------TGF 120
Query: 1113 DSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA 1167
+ L + S GQ++ L R L R+ + +LDE T ++D A +L +RA
Sbjct: 121 EDLPA---AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-14
Identities = 64/220 (29%), Positives = 105/220 (47%), Gaps = 22/220 (10%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG- 1048
+L Y D LKGI+ + G I+G G+GK+TL L +++P+ G+IL DG
Sbjct: 10 ELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGK 68
Query: 1049 -IDISKLGLHDLRSRFGIIPQDP--TLFNGTVRYNLD--PLSQHTDQEIWEVLAKCHLGE 1103
ID S+ GL LR G++ QDP LF+ +V ++ ++ L + + +
Sbjct: 69 PIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK--------LPEDEVRK 120
Query: 1104 AVRE--KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID---NATD 1158
V K G++ L + S GQ++ + L+ ++LVLDE TA +D +
Sbjct: 121 RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEI 180
Query: 1159 MILQKTIRAEFADCTVITVAHRIPTV-MDCTMVLAISDGK 1197
M L ++ E T+I H I V + C V + +G+
Sbjct: 181 MKLLVEMQKEL-GLTIIIATHDIDIVPLYCDNVFVMKEGR 219
|
Length = 283 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 36/168 (21%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
+L+G+S G ++GR G GKTTL+ L L+ G I +DG DI+KL H+ R+
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE-RA 73
Query: 1062 RFGI--IPQD----PTLFNGTVRYNL----DPL---SQHTDQEIWE---VLAKCHLGEAV 1105
R GI +PQ P L TV NL L S+ EI+E VL + +
Sbjct: 74 RAGIAYVPQGREIFPRL---TVEENLLTGLAALPRRSRKIPDEIYELFPVL------KEM 124
Query: 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI 1153
+ G + S GQ+Q + RAL+ R ++L+LDE T I
Sbjct: 125 LGRRGG----------DLSGGQQQQLAIARALVTRPKLLLLDEPTEGI 162
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 3e-14
Identities = 54/202 (26%), Positives = 87/202 (43%), Gaps = 59/202 (29%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L G+S + G ++G G+GK+TL+ L L +P G+ILVDG ++S D R
Sbjct: 15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDAR- 73
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121
R GI V Y L
Sbjct: 74 RAGI---------AMV-YQL---------------------------------------- 83
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA-TDMILQ--KTIRAEFADCTVITVA 1178
S+G+RQ+ + RAL R +R+L+LDE TA++ A + + + + +RA+ VI ++
Sbjct: 84 --SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ--GVAVIFIS 139
Query: 1179 HRIPTVMD-CTMVLAISDGKLA 1199
HR+ V + V + DG++
Sbjct: 140 HRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 3e-14
Identities = 58/197 (29%), Positives = 90/197 (45%), Gaps = 22/197 (11%)
Query: 998 DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD------GIDI 1051
+ +LK I+ GI+G +GSGK+TL+ L RL+E KI VD G DI
Sbjct: 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDI 80
Query: 1052 SKLGLHDLRSRFGIIPQDPTLFNGTVRYN--LDPLSQHTDQE-------IWEVLAKCHLG 1102
++ LR G++ Q P F Y+ PL H +E + E L K L
Sbjct: 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLW 140
Query: 1103 EAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQ 1162
+ V ++ N S S GQ+Q + RAL + ++L++DE T+ ID ++
Sbjct: 141 KEVYDRLN-------SPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE 193
Query: 1163 KTIRAEFADCTVITVAH 1179
K I + ++ V+H
Sbjct: 194 KLITELKNEIAIVIVSH 210
|
Length = 257 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 27/207 (13%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L IS + E G G++G G+GKTT I + ++ P G++L DG + R+
Sbjct: 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA----RN 70
Query: 1062 RFGIIPQDPTLF-NGTVRYNLDPLSQ-----HTD--QEIWEVLAKCHLGEAVREKENGLD 1113
R G +P++ L+ V L L+Q + + I E L + L E ++
Sbjct: 71 RIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE---YANKRVE 127
Query: 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFAD-- 1171
L S G +Q A++ +L+LDE + +D +L+ IR E A
Sbjct: 128 EL--------SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIR-ELARAG 178
Query: 1172 CTVITVAHRIPTVMD-CTMVLAISDGK 1197
TVI H++ V + C VL ++ G+
Sbjct: 179 KTVILSTHQMELVEELCDRVLLLNKGR 205
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 5e-14
Identities = 57/239 (23%), Positives = 93/239 (38%), Gaps = 22/239 (9%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062
+ G++ G G +G G+GKTT I L L+ P G V G D+ + +R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRS 67
Query: 1063 FGIIPQDPTLFNG-TVRYNLDPLSQ-------HTDQEIWEVLAKCHLGEAVREKENGLDS 1114
GI+PQ ++ T R NL+ + + ++ E+L LGEA
Sbjct: 68 IGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGT--- 124
Query: 1115 LVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCT 1173
+S G R+ + +L+ + +L LDE T +D T + IRA T
Sbjct: 125 --------YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVT 176
Query: 1174 VITVAHRIPTV-MDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWSHLHSAES 1231
++ H + C + I G++ P +L +R G + L S
Sbjct: 177 ILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLKVEVS 235
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 5e-14
Identities = 65/201 (32%), Positives = 97/201 (48%), Gaps = 33/201 (16%)
Query: 976 PPPNWPVVGKVDICDLQIRY---------RPDSPLVLKGISCTFEGGHKIGIVGRTGSGK 1026
P + PV+ +V+ DL++ + D + GIS T G +G+VG +GSGK
Sbjct: 269 LPEDAPVLLEVE--DLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGK 326
Query: 1027 TTLIGALFRLVEPAGGKILVDGIDISKLGLHD---LRSRFGIIPQDPTLFNGTVRYNLDP 1083
+TL AL RL+ G+I DG DI L + LR R ++ QDP G+ L P
Sbjct: 327 STLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP---YGS----LSP 378
Query: 1084 LSQHTDQEIWEVLA--KCHLGEAVRE-------KENGLDSLVVEDGSN-WSMGQRQLFCL 1133
Q I E L + L A R+ +E GLD + +S GQRQ +
Sbjct: 379 -RMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAI 437
Query: 1134 GRALLRRSRILVLDEATASID 1154
RAL+ + +++LDE T+++D
Sbjct: 438 ARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 5e-14
Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L G+S T G ++G G+GK+TL+ L + P G+IL+DG ++ D +
Sbjct: 23 ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALA 82
Query: 1062 RFGI--IPQDPTLF-NGTVRYNL----DPLSQHT--DQEIWEVLAKCHLGEAVREK--EN 1110
GI + Q+ +L N +V N+ +P + D++ A+ E + +
Sbjct: 83 A-GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR----ELLARLGLDI 137
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA-TDMILQKTIRAEF 1169
D+LV + S+ QRQ+ + RAL +R+L+LDE TA++ T+ + IR
Sbjct: 138 DPDTLV----GDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF-DLIR-RL 191
Query: 1170 AD--CTVITVAHRIPTVMD-CTMVLAISDGKLA 1199
+I ++HR+ V + + + DG++
Sbjct: 192 KAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 5e-14
Identities = 60/234 (25%), Positives = 109/234 (46%), Gaps = 43/234 (18%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL---VEPA--GGKILVDGIDISK--LG 1055
+KGI FE ++G +GSGK+T + +L R+ ++ A G+IL GIDI++ +
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 1056 LHDLRSRFGIIPQDPTLFNGTVRYNL----------DPLSQHTDQEIWEVLAKCHLGEAV 1105
++++R G++ Q P F ++ N+ D + D+ + L + L + V
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKD--KKVLDEIVETSLKQAALWDQV 153
Query: 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI 1165
++ + + S GQ+Q C+ RA+ + IL++DE +++D + M L++T+
Sbjct: 154 KDDLH-------KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETM 206
Query: 1166 RAEFADCTVITVAHRIPTVMDCTMVLA--ISD-------GKLAEYDEPMKLMKR 1210
+ T+I V H M A SD G L EYD+ +
Sbjct: 207 FELKKNYTIIIVTH--------NMQQAARASDYTAFFYLGDLIEYDKTRNIFTN 252
|
Length = 267 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 5e-14
Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 27/216 (12%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL---GLHD 1058
VL +S + E G +G++GR+G GK+TL L L +PA G + G D+ +L
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 1059 LRSRFGIIPQD-PTLFNG--TVRYNL-DPLSQHTDQEIWEVLAKC-HLGEAVREKENGLD 1113
R ++ QD P+ N TVR + +PL T + E A+ L + V + D
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145
Query: 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQ-------KTIR 1166
L + S GQ Q + RAL + +++VLDEA +++ DM+LQ + ++
Sbjct: 146 KLPRQ----LSGGQLQRINIARALAVKPKLIVLDEAVSNL----DMVLQAVILELLRKLQ 197
Query: 1167 AEFA-DCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200
F IT H + V C V + G++ E
Sbjct: 198 QAFGTAYLFIT--HDLRLVQSFCQRVAVMDKGQIVE 231
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 8e-14
Identities = 68/224 (30%), Positives = 100/224 (44%), Gaps = 49/224 (21%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL---GLHDL 1059
L +S G G++G +G+GK+TLI + L P G++LVDG D++ L L
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80
Query: 1060 RSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEV---------LAKCHLGEAVREKEN 1110
R + G+I Q +NL LS T V LA E ++ +
Sbjct: 81 RRQIGMIFQ---------HFNL--LSSRT------VFDNVALPLELAGTPKAE-IKARVT 122
Query: 1111 GLDSLV-VEDG-----SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA-TDMILQ- 1162
L LV + D + S GQ+Q + RAL ++L+ DEAT+++D A T IL+
Sbjct: 123 ELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL 182
Query: 1163 -KTIRAEFADCTVITVAHRIPTVMD-----CTMVLAISDGKLAE 1200
K I E T++ + H MD C V I G+L E
Sbjct: 183 LKDINREL-GLTIVLITHE----MDVVKRICDRVAVIDAGRLVE 221
|
Length = 343 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 1e-13
Identities = 67/258 (25%), Positives = 113/258 (43%), Gaps = 52/258 (20%)
Query: 987 DICDLQIRYRPDSPLV--LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA---- 1040
++ +L + + D+ +V + G+S + G +GIVG +GSGK+ L A+ L+
Sbjct: 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARI 62
Query: 1041 -GGKILVDGIDISKLG---LHDLR-SRFGIIPQDPTLFNGTVRYNLDPLSQHT--DQEIW 1093
GG+IL DG D+ L L +R +I QDP +L+P+ T DQ I
Sbjct: 63 VGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP-------MTSLNPV--MTIGDQ-IA 112
Query: 1094 EVLAKCHLGEAVREKENG----LDSLVVEDGSNW--------SMGQRQLFCLGRALLRRS 1141
EVL G + +E + L+ + + D S G RQ + AL
Sbjct: 113 EVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNP 172
Query: 1142 RILVLDEATASID--NATDMI-LQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISD--- 1195
++L+ DE T ++D ++ L K ++ E +I + H D +V I+D
Sbjct: 173 KLLIADEPTTALDVTVQAQILDLLKELQREK-GTALILITH------DLGVVAEIADRVA 225
Query: 1196 ----GKLAEYDEPMKLMK 1209
G++ E ++ K
Sbjct: 226 VMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 4e-13
Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 27/225 (12%)
Query: 991 LQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG-- 1048
+ I R LK I GI G +G+GK+TL+ + L +P GG I+++G
Sbjct: 4 VDIEKRLPD-FTLK-IDFDLNEE-VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTV 60
Query: 1049 -IDISK-LGLHDLRSRFGIIPQDPTLF-NGTVRYNLD-PLSQHTDQEIW----EVLAKCH 1100
D K + L + + G++ Q LF + VR NL L + ++E E+L
Sbjct: 61 LFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLG 120
Query: 1101 LGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMI 1160
L + L S G++Q L RAL + +L+LDE +++D A +
Sbjct: 121 LDHLLNRYPAQL-----------SGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQ 169
Query: 1161 LQKTIRAEFAD--CTVITVAHRIPTV-MDCTMVLAISDGKLAEYD 1202
L ++ + VI V H + ++ + DG+L
Sbjct: 170 LLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 5e-13
Identities = 71/264 (26%), Positives = 122/264 (46%), Gaps = 35/264 (13%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL---VEPA- 1040
K+ + DL + Y D LKG+S ++G +G GK+T + L R+ ++ A
Sbjct: 45 KLSVEDLDVYYGDDH--ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAAR 102
Query: 1041 -GGKILVDGIDISKLG--LHDLRSRFGIIPQDPTLFNGTVRYNLD--PLSQHTDQEIWEV 1095
G + +DG DI + G L +LR R G++ Q P F ++R N+ P +H D +
Sbjct: 103 IDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGP-RKHGDINT-GL 160
Query: 1096 LAKCHLGEAVREKENGLDSLVVEDGSNW--------------SMGQRQLFCLGRALLRRS 1141
LA+ LG ++ E+ L + + W S GQ+Q C+ R L
Sbjct: 161 LARL-LGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDP 219
Query: 1142 RILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRI---PTVMDCTMVLAISDGKL 1198
++++DE +++D ++ I + TV+ V H + + D T V ++ G+L
Sbjct: 220 EVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVF-LTGGEL 278
Query: 1199 AEYDEPMKLMKREGSLFGQLVREY 1222
EYD+ K+ + S Q V +Y
Sbjct: 279 VEYDDTDKIFENPES---QRVEDY 299
|
Length = 305 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 5e-13
Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 7/201 (3%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062
L I+ G IVG+ G GK++L+ A+ ++ GK+ + S+ RSR
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 1063 ----FGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVE 1118
Q P L N TV N+ S Q V C L + G + + E
Sbjct: 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGE 136
Query: 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID-NATDMILQKTIRAEFAD--CTVI 1175
G N S GQRQ C+ RAL + + I+ LD+ +++D + +D ++Q+ I D T++
Sbjct: 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLV 196
Query: 1176 TVAHRIPTVMDCTMVLAISDG 1196
V H++ + ++A+ DG
Sbjct: 197 LVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 26/216 (12%)
Query: 997 PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL-- 1054
P+ L GI+ + G + +VG +G+GK+TL+ +++ P G I V+G D+S L
Sbjct: 11 PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRG 70
Query: 1055 -GLHDLRSRFGIIPQDPTLF-NGTVRYNLD---PLSQHTDQEIWE----VLAKCHLGEAV 1105
+ LR + G++ QD L + V N+ ++ +EI + L L
Sbjct: 71 RAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD---MILQ 1162
R L S G++Q + RA++ IL+ DE T ++D T M L
Sbjct: 131 RALPAEL-----------SGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179
Query: 1163 KTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKL 1198
K I V T A + V+A+ GKL
Sbjct: 180 KKINKAGTTVVVATHAKELVDTTR-HRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 6e-13
Identities = 56/248 (22%), Positives = 102/248 (41%), Gaps = 39/248 (15%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
++I ++ + + IS + G + ++G +G GKTTL+ + +P+ G+IL
Sbjct: 6 LEIRNVSKSF--GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 1046 VDGIDISKLGLHDLRSRFGIIPQDPTLF-NGTVRYNL--------DPLSQHTDQEIWEVL 1096
+DG DI+ + + G++ Q LF + TV N+ + E L
Sbjct: 64 LDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEAL 121
Query: 1097 AKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA 1156
L L S GQ+Q L RAL+ ++L+LDE +++D
Sbjct: 122 ELVGLEG--FADRKP-HQL--------SGGQQQRVALARALVPEPKVLLLDEPLSALDAK 170
Query: 1157 TDMILQKTIR--AEFADCTVITVAHRIPTVMDCTMVLAISD-------GKLAEYDEPMKL 1207
++K ++ T + V H D LA+SD G++ + P ++
Sbjct: 171 LREQMRKELKELQRELGITFVYVTH------DQEEALAMSDRIAVMNDGRIEQVGTPEEI 224
Query: 1208 MKREGSLF 1215
+R + F
Sbjct: 225 YERPATRF 232
|
Length = 352 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 6e-13
Identities = 61/212 (28%), Positives = 96/212 (45%), Gaps = 8/212 (3%)
Query: 997 PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG- 1055
PD L+ I+ + G IGI+G+ GSGK+TL L L+ P GK+LV GID
Sbjct: 12 PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSK 71
Query: 1056 LHDLRSRFGIIPQDP-TLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLD 1113
L +R GI+ Q+P T F G TV +L ++ E+ + A E GL+
Sbjct: 72 LQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALA----EIGLE 127
Query: 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID-NATDMILQKTIRAEFADC 1172
S GQ Q L L L+ DE T+ +D ++ +L++ +
Sbjct: 128 KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 1173 TVITVAHRIPTVMDCTMVLAISDGKLAEYDEP 1204
T++ + H + + D ++ + GK+ EP
Sbjct: 188 TIVYITHNLEELHDADRIIVMDRGKIVLEGEP 219
|
Length = 274 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 7e-13
Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 20/190 (10%)
Query: 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG---GKILVDGIDISKLGLH 1057
+L +S E G + I+G +GSGKTTL+ A+ VE G G+IL +G
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---D 77
Query: 1058 DLRSRFGIIPQDPTLFNG-TVR-----YNLDPLSQHTDQEIWEVLAKCHLGEAVREKENG 1111
+ + QD L G TVR + L + + I + E V ++
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRV-----EDVLLRDLA 132
Query: 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA- 1170
L + S G+R+ + LL ++L+LDE T+ +D+ T + L T+ + A
Sbjct: 133 LTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS-QLAR 191
Query: 1171 -DCTVITVAH 1179
+ VI H
Sbjct: 192 RNRIVILTIH 201
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (170), Expect = 8e-13
Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 21/214 (9%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDI--SKLG 1055
L GIS FE ++G +G GK+T + L R+ + G+I +G +I SK+
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 1056 LHDLRSRFGIIPQDPTLFNGTVRYNLD---PLSQHTDQEIWEVLAKCHLGEAV--REKEN 1110
L +LR G++ Q PT F +V N+ ++ D+E+ + + L +A +E ++
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA 1170
LD + +S GQ+Q C+ RAL R ++++LDE T+++D + +++T+
Sbjct: 140 NLD----RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH 195
Query: 1171 DCTVITVAHRIPT---VMDCTMVLAISDGKLAEY 1201
T I V H + + D T L +G L E
Sbjct: 196 QYTFIMVTHNLQQAGRISDQTAFLM--NGDLIEA 227
|
Length = 251 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 9e-13
Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 27/223 (12%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE--PAG---GKILVDGIDISKLGLH 1057
LKGIS E + +G +G GK+T + R+ + PA G+I +DG +I G+
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 1058 --DLRSRFGIIPQDPTLFNGTV--------RYNLDPLSQHTDQEIWEVLAKCHLGEAVRE 1107
+LR G++ Q P F ++ R N + Q + E L L + V++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA 1167
K + E S GQ+Q C+ RA+ +L++DE +++D + +++ I
Sbjct: 139 K-------LKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 1168 EFADCTVITVAHRI---PTVMDCTMVLAISDGKLAEYDEPMKL 1207
D T++ V H + V D T + G++ EYD+ K+
Sbjct: 192 LKKDYTIVIVTHNMQQAARVSDKTAFFYM--GEMVEYDDTKKI 232
|
Length = 250 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-12
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+SI + SFS+ E + ++N+SLE++ G+K+A+ G GSGKSTLL + G++ QG I
Sbjct: 1 LSINNVSFSYPEQE-QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 688 LQNSWLAANVEN 699
+ +++E
Sbjct: 60 TLDGVPVSDLEK 71
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 1e-12
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 21/178 (11%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
+++ DL RY+ D LKG+S + G K ++G G+GK+TL+ L + P G++
Sbjct: 5 IEVEDLHFRYK-DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1046 VDGIDISKLGLHDLRSRFGIIPQDP--TLFNGTVRYNL--DPLSQHTDQEIWEVLAKCHL 1101
V G +++ +RS+ G++ QDP +F+ TV ++ P++ D++
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD---------- 113
Query: 1102 GEAVREKENGLDSLVVEDGSN-----WSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
E R E L ++ + D + S GQ++ + L ++VLDE A +D
Sbjct: 114 -EVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLD 170
|
Length = 274 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 11/186 (5%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG-IDISKLGLHDLRS 1061
L +S + + G ++G G+GKTTL+ + P G++L DG D++KL H +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR-IA 79
Query: 1062 RFGIIP--QDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKEN-----GLD 1113
R GI Q PT+F TVR NL+ L+ + D+ ++ L E R + GL
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLE-LALNRDKSVFASLFARLRAEERRRIDELLATIGLG 138
Query: 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCT 1173
+ S GQ+Q +G L + ++L+LDE A + +A + +++ +
Sbjct: 139 DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHS 198
Query: 1174 VITVAH 1179
++ V H
Sbjct: 199 ILVVEH 204
|
Length = 249 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-12
Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 19/215 (8%)
Query: 1005 GISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILV----DGIDISKLGLHDLR 1060
+S + G GIVG +G+GKTTL + ++EP G++ V + +D++K G D R
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP-DGR 360
Query: 1061 SR----FGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAK---CHLGEAVREKENGLD 1113
R GI+ Q+ L+ R LD L++ E+ + LA+ + V E +
Sbjct: 361 GRAKRYIGILHQEYDLY--PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAE 418
Query: 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI---RAEFA 1170
++ + S G+R L + L++ RI++LDE T ++D T + + +I R E
Sbjct: 419 EILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME 478
Query: 1171 DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEP 1204
T I V+H + V+D C + DGK+ + +P
Sbjct: 479 Q-TFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 57/221 (25%), Positives = 95/221 (42%), Gaps = 25/221 (11%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
+ +S G +G++G G+GKTTL + +P+ G ++ G DI+ L H +
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIA 77
Query: 1062 RFGIIP--QDPTLFNG-TVRYNLDPLSQHTDQEIWEVL---AKCHLGEAVREK------E 1109
R GI Q LF G TV N+ + H + +L RE+
Sbjct: 78 RLGIARTFQITRLFPGLTVLENV-AVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 1110 NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATA--SIDNATDMI-LQKTIR 1166
GL L N S GQ++ + RAL + ++L+LDE A + + ++ L + +R
Sbjct: 137 VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELR 196
Query: 1167 AEFADCTVITVAHRIPTVMDCT---MVLA----ISDGKLAE 1200
T++ + H + VM +VL I++G E
Sbjct: 197 DRG-GVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236
|
Length = 250 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 31/222 (13%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
+L G+S G + I+G G+GK+TL+ AL + P G++ ++G+ ++ +L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 1062 RFGIIPQDPTL-FNGTVR---------YNLDPLSQHTDQEIWEVLAKCHLGEAVREKENG 1111
++PQ+ +L F TV+ + + ++ + LA
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAAT-----------D 124
Query: 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRS------RILVLDEATASIDNATDMILQKTI 1165
L L D S G++Q L R L + R L LDE T+++D A +
Sbjct: 125 LSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 1166 RAEFAD--CTVITVAHRIP-TVMDCTMVLAISDGKLAEYDEP 1204
R + A V+ V H + ++ + G++ P
Sbjct: 185 R-QLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225
|
Length = 259 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 24/191 (12%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI----SKLGLH 1057
+L ++ T E G I+G +GSGK+TL+ + L + G++ ++G + SK
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 1058 DLRSRFGIIPQDPTLF-NGTVRYNLD------PLSQHTDQE-IWEVLAKCHLGEAVREKE 1109
R + G + Q+ L N TV NLD LS+ +E E L K L
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL-------N 125
Query: 1110 NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT-DMILQKTIRAE 1168
L + E S G++Q L RA+L+ +++ DE T S+D D +L +
Sbjct: 126 LKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
Query: 1169 FADCTVITVAH 1179
T+I V H
Sbjct: 182 DEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 61/197 (30%), Positives = 89/197 (45%), Gaps = 43/197 (21%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VL +S + G + ++G G+GK+TL+ + LV P G I + +
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 1062 RFGIIPQ----DPTLFNGTVRY-NLDPLSQHTDQEIWEVLAKC---HLGEAVREKENGLD 1113
R G +PQ D TL R+ L P ++ D I L + HL +A +K +G
Sbjct: 68 RIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKED--ILPALKRVQAGHLIDAPMQKLSG-- 123
Query: 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID-NAT----DMILQKTIRAE 1168
G+ Q L RALL R ++LVLDE T +D N D+I Q +R E
Sbjct: 124 ------------GETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ--LRRE 169
Query: 1169 FADCTVITVAHRIPTVM 1185
DC V+ V+H + VM
Sbjct: 170 L-DCAVLMVSHDLHLVM 185
|
Length = 251 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 94/417 (22%), Positives = 164/417 (39%), Gaps = 47/417 (11%)
Query: 301 LRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNA--FILVTEGKAGFKYEGYVLAITLF 358
L + Y R F +L +LTL A LL + + AG Y V+ +
Sbjct: 4 LLPYLRLYKRHKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAG 63
Query: 359 V--AKILESLSQRQWYFRSRLIG----LKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMN 412
V IL + ++ Y RL+ +V S L +++K LS A L + G+++N
Sbjct: 64 VRGLAILRTAAR---YVE-RLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLN 119
Query: 413 YVT--VDA----YRIGEFPFWFHQIWTTSVQLCIALIIL--FHAVGLATIAALVVIMITV 464
+ VDA Y P ++ L + I F ++ LA + L+++++ +
Sbjct: 120 RLVADVDALDNLYLRVIAP------AVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLL 173
Query: 465 LCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYK 524
+ + KF L + ++ + L ++ E ++ A+E E
Sbjct: 174 IIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE---ATEAS 230
Query: 525 WLSAVQLRKA-----YNTFLFWSSPVLVSTATFG-ACYF----LNVPLYASNVFTFVATL 574
WL A Q ++A + L + +LV A L P A + A L
Sbjct: 231 WLKA-QRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAAL 289
Query: 575 RLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSAS 634
+ P+ P Q + R+ + L+ + Q + +++ S
Sbjct: 290 EAFE-PLA--PGAFQHLGQVIASARRLNDILDQKPEVTFPDEQ---TATTGQALELRNVS 343
Query: 635 FSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNS 691
F++ +K ++N +L + G+KVAI G GSGKSTLL + G QG+I N
Sbjct: 344 FTYPGQQTKA-LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399
|
Length = 573 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-12
Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 62/251 (24%)
Query: 988 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD 1047
+ +L + Y D PL L+ +S T G +IG+VGR G+GK+TL+ L +EP G++
Sbjct: 6 LENLSLAY-GDRPL-LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRP 63
Query: 1048 GIDISKLGLHDLRSRFGIIPQDPTLF-NGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVR 1106
GL R G + Q+P L TV + E+ E+LA+ A+
Sbjct: 64 K------GL-----RVGYLSQEPPLDPEKTVLDYVI----EGFGELRELLAELEEAYALL 108
Query: 1107 EKENG-------------------------LDSLVVEDG----SNWSMGQRQLFCLGRAL 1137
+ L L D S+ S G R+ L RAL
Sbjct: 109 ADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARAL 168
Query: 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-------CTMV 1190
L +L+LDE T +D + L+ ++ TVI V+H D T +
Sbjct: 169 LEEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPGTVIVVSH------DRYFLDNVATHI 220
Query: 1191 LAISDGKLAEY 1201
L + GKL Y
Sbjct: 221 LELDRGKLTPY 231
|
Length = 530 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 35/218 (16%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG---LHD 1058
VLKG+S + G + IVG +GSGK+TL+ L L P G++L +G +SKL
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 1059 LRSR-FGIIPQ-DPTLFNGTVRYNLD-PL------SQHTDQEIWEVLAKCHLGEAVREKE 1109
LR++ G I Q L + T N+ PL + + +E+L K L + +
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP 139
Query: 1110 NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT-----DMILQ-- 1162
+ L S G+RQ + RAL+ + +++ DE T ++DN D++L+
Sbjct: 140 SEL-----------SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELN 188
Query: 1163 KTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAE 1200
+ + F + V H + VL + DG+L
Sbjct: 189 RELNTSF-----LVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 2e-12
Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 32/224 (14%)
Query: 1018 IVGRTGSGKTTLIGALFRL--------VEPAGGKILVDGIDI--SKLGLHDLRSRFGIIP 1067
I+G +G GKTTL+ ++ R+ VE GKI G DI +L + + R + G++
Sbjct: 34 IIGPSGCGKTTLLRSINRMNDHIPGFRVE---GKIYFKGQDIYDPQLDVTEYRKKVGMVF 90
Query: 1068 QDPTLFNGTVRYNLD-PLSQH-------TDQEIWEVLAKCHLGEAVREKENGLDSLVVED 1119
Q PT F ++ N+ H D+ + E L K L + V+ + N +
Sbjct: 91 QKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELN-------KP 143
Query: 1120 GSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAH 1179
G+ S GQ+Q C+ RAL +++LDE T+++D ++K + + T++ V H
Sbjct: 144 GTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTH 203
Query: 1180 RIPTVMDCTMVLA-ISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222
I + +A + G+L EY ++++R + +L EY
Sbjct: 204 NIGQAIRIADYIAFMYRGELIEYGPTREIVERPKN---KLTEEY 244
|
Length = 250 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 37/171 (21%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062
+K +S T G + I+G GSGK+TL L ++EP G+IL++ L D R
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILIND---HPLHFGDYSFR 85
Query: 1063 ---FGIIPQDP-TLFNGTVRYN--LD-PLSQHTD-------QEIWEVLAKCHLGEAVREK 1108
+I QDP T N +R LD PL +TD ++I+E L L
Sbjct: 86 SKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------- 138
Query: 1109 ENGLDSLVVEDGSNW-----SMGQRQLFCLGRALLRRSRILVLDEATASID 1154
+ D +N+ + GQ+Q L RAL+ R +I++ DEA AS+D
Sbjct: 139 --------LPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 2e-12
Identities = 65/212 (30%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-- 1059
VLKGIS G + IVG +GSGK+TL+ L L +P G V G D++ L L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 1060 --RSRFGIIPQDPTLFNGTVRYNLDP-LSQHTDQEIWEVLAKCHLGEAVREKEN------ 1110
R FG I Q RY+L L+ + E+ V A L R
Sbjct: 83 LRREHFGFIFQ---------RYHLLSHLTAAQNVEVPAVYAG--LERKQRLLRAQELLQR 131
Query: 1111 -GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD---MILQKTIR 1166
GL+ V S S GQ+Q + RAL+ ++++ DE T ++D+ + M + +R
Sbjct: 132 LGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLR 191
Query: 1167 AEFADCTVITVAHRIPTVMDCTMVLAISDGKL 1198
TVI V H V+ I DG++
Sbjct: 192 DR--GHTVIIVTHDPQVAAQAERVIEIRDGEI 221
|
Length = 648 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 3e-12
Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 29/232 (12%)
Query: 999 SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG-LH 1057
L L ++ + G + I+GR GSGK+T+ + L+ P+ GK+ VDG+D S L
Sbjct: 22 EKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLW 81
Query: 1058 DLRSRFGIIPQDP------TLFNGTVRY---NLDPLSQHTDQEIWEVLAKCHLGEAVREK 1108
D+R++ G++ Q+P T+ V + NL + + + E L K + E R
Sbjct: 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHA 141
Query: 1109 ENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA- 1167
+ L S GQ+Q + L R ++ DE TA +D + + TI+
Sbjct: 142 PHLL-----------SGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKEL 190
Query: 1168 -EFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEP------MKLMKREG 1212
+ T+I + H + ++ ++ + GK+ P +++MK+ G
Sbjct: 191 NKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKEVEMMKKIG 242
|
Length = 280 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 3e-12
Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 13/234 (5%)
Query: 995 YRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL 1054
+ L++ G+ T G G++G GSGK+TL+ L + P G + + G+D+ L
Sbjct: 9 WSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGL 68
Query: 1055 GLHDLRSRFGIIPQD-PTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVRE--KENG 1111
R ++ QD T TVR ++ L + + +W H V
Sbjct: 69 SRRARARRVALVEQDSDTAVPLTVR-DVVALGRIPHRSLW-AGDSPHDAAVVDRALARTE 126
Query: 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFAD 1171
L L D S S G+RQ + RAL + ++L+LDE T +D + +R A
Sbjct: 127 LSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT 186
Query: 1172 -CTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223
TV+ H + C V+ + G++ P +++ L+R +
Sbjct: 187 GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPA------LIRAVY 234
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 26/219 (11%)
Query: 1007 SCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGII 1066
T G + I+G +G+GK+TL+ + PA G+IL++G+D + ++
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHT--ASPPAERPVSML 76
Query: 1067 PQDPTLFNG-TVRYNLD-------PLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVE 1118
Q+ LF TV N+ L+ +++ A+ L ++ L
Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL------ 130
Query: 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA--TDMI-LQKTIRAEFADCTVI 1175
S GQRQ L R L+R IL+LDE +++D A +M+ L + E T++
Sbjct: 131 -----SGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE-RKMTLL 184
Query: 1176 TVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGS 1213
V H V+ + +G++A +L+ + S
Sbjct: 185 MVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223
|
Length = 231 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 3e-12
Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 29/238 (12%)
Query: 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG-- 1041
G + I L++ Y ++ VL +S E G + ++G++G GKTTL+ A+ V+ AG
Sbjct: 4 GGIRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 1042 GKILVDGIDISKLGLHDLRSRFGIIPQDPTLF-----NGTVRYNLDPLSQHT---DQEIW 1093
G+I + D++ H + ++ Q+ LF V + L + +
Sbjct: 62 GRIAIADRDLTHAPPH--KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVA 119
Query: 1094 EVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI 1153
+ L LG+A L S G +Q + RA+ +L+LDE +++
Sbjct: 120 DALKLVGLGDAAAHLPAQL-----------SGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 1154 DNATDMILQKTIRA---EFADCTVITVAH-RIPTVMDCTMVLAISDGKLAEYDEPMKL 1207
D +++ I A E + T++ V H + + + DG+LA + EP L
Sbjct: 169 DANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 3e-12
Identities = 62/238 (26%), Positives = 116/238 (48%), Gaps = 17/238 (7%)
Query: 986 VDICDLQIRYRPDSP-LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
+++ +L +Y+ D L +S + G + I+G GSGK+T + + L+E G+I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1045 LVDGIDISKLGLHDLRSRFGIIPQDP-TLFNGT-----VRYNLDPLSQHTDQEIWEVLAK 1098
++DG +++ + D+R + G++ Q+P F G V + L+ ++ I K
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLE------NKGIPHEEMK 118
Query: 1099 CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158
+ EA+ G+ + + S GQ+Q + A+ R +I++LDEAT+ +D
Sbjct: 119 ERVNEALELV--GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176
Query: 1159 MILQKTIRA--EFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSL 1214
+ L KTI+ + TVI++ H + V VL + +G++ P +L R L
Sbjct: 177 LELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDL 234
|
Length = 279 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 62/215 (28%), Positives = 92/215 (42%), Gaps = 29/215 (13%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL---GLHD 1058
+LKG+ + G + IVG +GSGK+TL+ L L +P+ G++ + G + KL
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 1059 LRSR--------FGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKEN 1110
LR+R F +IP L N + L S + AK L EAV
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG----AKALL-EAV----- 134
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT-----DMILQKTI 1165
GL + + S G++Q L RA R +L DE T ++D AT D++
Sbjct: 135 GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN- 193
Query: 1166 RAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAE 1200
E T++ V H C L + G+L E
Sbjct: 194 -RERG-TTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 4e-12
Identities = 63/274 (22%), Positives = 123/274 (44%), Gaps = 19/274 (6%)
Query: 952 ISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFE 1011
+S++RL ++ P+ +E R + + + + D P L GI+ +
Sbjct: 605 VSLKRLRIFLSHEELEPDSIE--RRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIP 662
Query: 1012 GGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPT 1071
G + +VG+ G GK++L+ AL ++ G + + G +PQ
Sbjct: 663 EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAW 709
Query: 1072 LFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131
+ N ++R N+ ++ +VL C L + +G + + E G N S GQ+Q
Sbjct: 710 IQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRV 769
Query: 1132 CLGRALLRRSRILVLDEATASID-NATDMILQKTIRAE--FADCTVITVAHRIPTVMDCT 1188
L RA+ + I + D+ +++D + I + I E + T I V H I +
Sbjct: 770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVD 829
Query: 1189 MVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222
+++ +S GK++E +L++R+G+ F + +R Y
Sbjct: 830 VIIVMSGGKISEMGSYQELLQRDGA-FAEFLRTY 862
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 4e-12
Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 24/210 (11%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----P 1039
K++I DL++ + VL G++ ++G +GSGK+TL+ RL+E
Sbjct: 3 KIEIRDLKVSF--GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 1040 AGGKILVDGIDISKLGLHDLRSRFGIIPQDP------TLF-NGTVRYNLDPLSQHT---D 1089
G++ +DG DI K+ + +LR R ++ Q P ++F N + L+ L +
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ 120
Query: 1090 QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEA 1149
+ + L K L + V+++ + S GQ+Q C+ RAL + +L+ DE
Sbjct: 121 ERVRWALEKAQLWDEVKDRLDA-------PAGKLSGGQQQRLCIARALAFQPEVLLADEP 173
Query: 1150 TASIDNATDMILQKTIRAEFADCTVITVAH 1179
TA++D ++ D T++ V H
Sbjct: 174 TANLDPENTAKIESLFLELKKDMTIVLVTH 203
|
Length = 250 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-12
Identities = 58/166 (34%), Positives = 85/166 (51%), Gaps = 22/166 (13%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG---LHD 1058
V+K IS T G +G+VG +GSGK+T AL RL+ + G+I DG + L L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 1059 LRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLA--KCHLGEAVRE-------KE 1109
+R R ++ QDP N ++ L+ L Q I E L + L A RE +E
Sbjct: 360 VRHRIQVVFQDP---NSSLNPRLNVL-----QIIEEGLRVHQPTLSAAQREQQVIAVMEE 411
Query: 1110 NGLDSLVVED-GSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
GLD + +S GQRQ + RAL+ + +++LDE T+S+D
Sbjct: 412 VGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 55/174 (31%), Positives = 82/174 (47%), Gaps = 20/174 (11%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L +S T G + ++G G+GK+TL L RL G+I V G D+ + L
Sbjct: 16 ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA- 74
Query: 1062 RFGIIPQDPTL-FNGTVRYN------LDPLSQHTDQE-IWEVLAKCHLGEAVREKENGLD 1113
R G++ Q PTL + +VR N L LS+ + I E+LA+ L E +K L
Sbjct: 75 RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVREL- 133
Query: 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA 1167
+ G R+ + RALL R +L+LDE T +D A+ + +RA
Sbjct: 134 ----------NGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRA 177
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 5e-12
Identities = 69/220 (31%), Positives = 106/220 (48%), Gaps = 36/220 (16%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VLKGI T G ++G G+GK+TL+ + +V P G + + G ++L
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT-PAKAH 84
Query: 1062 RFGI--IPQDPTLF-NGTVRYNLD---PLSQHTDQEIWEVLAK--CHLGEAVREKENGLD 1113
+ GI +PQ+P LF N +V+ N+ P Q + Q++ ++LA C L
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAG----- 139
Query: 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA-DC 1172
SL V D RQ+ + R L+R SRIL+LDE TAS+ A L IR A
Sbjct: 140 SLEVAD--------RQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGV 191
Query: 1173 TVITVAHRIP---------TVM-DCTMVLAISDGKLAEYD 1202
++ ++H++P +VM D T+ L+ GK A+
Sbjct: 192 GIVFISHKLPEIRQLADRISVMRDGTIALS---GKTADLS 228
|
Length = 510 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 7e-12
Identities = 49/202 (24%), Positives = 100/202 (49%), Gaps = 24/202 (11%)
Query: 1017 GIVGRTGSGKTTLIGALFRL---VEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLF 1073
++G +G GK+T + R+ + G + ++G D+ + LR G++ Q P +F
Sbjct: 32 ALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91
Query: 1074 NGTVRYN------LDPLSQHTDQE---IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124
++ N L + ++ D+E + + L K L E V++K + ++ S
Sbjct: 92 VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALS 144
Query: 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPT- 1183
GQ+Q C+ RAL + ++L+LDE T+++D + ++++ ++ + ++I V H +
Sbjct: 145 GGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQG 204
Query: 1184 --VMDCTMVLAISDGKLAEYDE 1203
V D T + G+L E+ E
Sbjct: 205 KRVADYTAFFHL--GELIEFGE 224
|
Length = 246 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 8e-12
Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 37/245 (15%)
Query: 992 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG--- 1048
++ R + L IS + G + ++G +G+GK+TL+ + L P G+I ++G
Sbjct: 7 NVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVL 66
Query: 1049 IDISKLGLHDLRSRFGIIPQDPTLF-NGTVRYN---------LDPLSQHTDQEIWEVLAK 1098
D+S L + D + G + Q LF + TV N P + E+L
Sbjct: 67 FDVSNLAVRD--RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRL 124
Query: 1099 CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158
L L S GQRQ L RAL ++L+LDE ++D
Sbjct: 125 VQLEGLADRYPAQL-----------SGGQRQRVALARALAVEPKVLLLDEPFGALDAK-- 171
Query: 1159 MILQKTIRAEFADC------TVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211
++K +R T + V H ++ V+ ++ G++ + P ++
Sbjct: 172 --VRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHP 229
Query: 1212 GSLFG 1216
S F
Sbjct: 230 ASRFV 234
|
Length = 345 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 1e-11
Identities = 66/231 (28%), Positives = 103/231 (44%), Gaps = 20/231 (8%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG- 1048
DL RY+ D P VLKG++ F G+VG G GK+TL L L+ P G +L G
Sbjct: 6 DLWFRYQ-DEP-VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63
Query: 1049 -IDISKLGLHDLRSRFGIIPQDP------TLFNGTVRYNLDPLSQHTDQEIWEVLAKCHL 1101
+D SK GL LR + + QDP T + + ++L L + V L
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTL 123
Query: 1102 GEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMIL 1161
+A + + L S GQ++ + AL+ ++R L+LDE TA +D A +
Sbjct: 124 VDAQHFRHQPIQCL--------SHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQM 175
Query: 1162 QKTIRAEFADCT-VITVAHRIPTVMDCT-MVLAISDGKLAEYDEPMKLMKR 1210
IR A VI +H I + + + V + G++ + P ++
Sbjct: 176 IAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226
|
Length = 271 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 23/160 (14%)
Query: 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLR 1060
+ IS T G++G G+GK+TL+ + ++ P G+I+ DG ++ DL
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR---KDLH 70
Query: 1061 SRFGIIPQDPTLFNGTVRYNLDPLSQHT------DQEIWEVLAKCHLGEAVREKENGLDS 1114
+I P N T R N L HT D I EVL L ++K
Sbjct: 71 KIGSLIESPPLYENLTAREN---LKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK------ 121
Query: 1115 LVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
+S+G +Q + ALL ++L+LDE T +D
Sbjct: 122 -----AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 24/231 (10%)
Query: 995 YRPDSPLVLKG---ISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI 1051
Y P +P+ KG IS E G + +VG TGSGK+TL+ L++P+ G I + G I
Sbjct: 12 YSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHI 71
Query: 1052 ----SKLGLHDLRSRFGIIPQDP--TLFNGTVRYNLD--PLS-QHTDQEIWEVLAKCHLG 1102
L LR + ++ Q P LF TV +++ P + ++ E E
Sbjct: 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-------- 123
Query: 1103 EAVR-EKENGLDSLVVEDGS-NWSMGQRQLFCLGRALLRRSRILVLDEATASID-NATDM 1159
+A++ K+ GL ++ S GQ + + + IL LDE A +D
Sbjct: 124 KALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKE 183
Query: 1160 ILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209
++Q + A TVI V H + V + VL + GKL ++ P ++
Sbjct: 184 MMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234
|
Length = 287 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 17/173 (9%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG- 1048
DL+ Y PD LKGI+ E G + ++G G+GK+TL +++P G++L+ G
Sbjct: 6 DLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE 64
Query: 1049 -IDISKLGLHDLRSRFGIIPQDP--TLFNGTVRYNL--DPLSQHTDQEIWEVLAKCHLGE 1103
I K L ++R GI+ Q+P LF TV ++ PL+ +E EV +
Sbjct: 65 PIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE--EV------EK 116
Query: 1104 AVRE--KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
V+E K G++ + + S GQ++ + L + I+VLDE T+ +D
Sbjct: 117 RVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
|
Length = 275 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 55/236 (23%), Positives = 101/236 (42%), Gaps = 22/236 (9%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
++ +Y+ D+ LK +S G IVG GSGK+T+ + + + G+I +
Sbjct: 12 NVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQ 71
Query: 1050 DISKLGLHDLRSRFGIIPQDP-TLFNG-TVRYN----LDPLSQHTD---QEIWEVLAKCH 1100
I+ LR GI+ Q+P F G V+Y+ L+ + D + + E L +
Sbjct: 72 AITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVD 131
Query: 1101 LGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMI 1160
+ E + N L S GQ+Q + L +++LDEAT+ +D
Sbjct: 132 MLERADYEPNAL-----------SGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQN 180
Query: 1161 LQKTIR--AEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSL 1214
L +R + T+I++ H + M+ V+ ++ G + + P ++ L
Sbjct: 181 LLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEEL 236
|
Length = 269 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 1e-11
Identities = 58/209 (27%), Positives = 88/209 (42%), Gaps = 29/209 (13%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
LK +S G +IG++GR G+GK+TL+ L + P G + V G S LGL
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG---- 92
Query: 1062 RFGIIPQ----DPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVV 1117
G P+ + NG + L + D++I E++ LG+ +D V
Sbjct: 93 -GGFNPELTGRENIYLNGRL-LGLSR--KEIDEKIDEIIEFSELGDF-------IDLPV- 140
Query: 1118 EDGSNWSMGQ--RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADC-TV 1174
+S G R F + AL IL++DE A D A Q+ +R TV
Sbjct: 141 ---KTYSSGMKARLAFAIATAL--EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTV 195
Query: 1175 ITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202
I V+H ++ C L + GK+
Sbjct: 196 ILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-11
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 28/211 (13%)
Query: 1018 IVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLF-NGT 1076
++G +G GKTTL+ L +P G I++DG D++ + H LR ++ Q LF + T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH-LRH-INMVFQSYALFPHMT 58
Query: 1077 VRYNLD-PLSQH------TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129
V N+ L + E L L E K + L S GQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQL-----------SGGQQQ 107
Query: 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA--EFADCTVITVAHRIPTVMDC 1187
L RAL+ + +IL+LDE +++D +Q ++ E T + V H M
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAM-- 165
Query: 1188 TM---VLAISDGKLAEYDEPMKLMKREGSLF 1215
TM + + GK+A+ P ++ + +LF
Sbjct: 166 TMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 2e-11
Identities = 116/539 (21%), Positives = 220/539 (40%), Gaps = 72/539 (13%)
Query: 710 VYLLIGFVSTLF---LMSRSLSSVV-LGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVL 765
VY + F F S+ +V +G R +L + + + R + G+V
Sbjct: 342 VYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVT 401
Query: 766 SRVSSDLSIVDL---------DVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIF 816
+ +++D + + PF +I ++ Y LGV ++ +LF+ IP+
Sbjct: 402 NMITTDANALQQIAEQLHGLWSAPFRIIVSM---VLLYQQLGVASLFGSLILFLLIPLQT 458
Query: 817 LAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDT 876
L +R R KE ++ ++ E +A T++ + E F ++ + +
Sbjct: 459 LIVRKMR---KLTKEGLQWTDKRVGIIN----EILASMDTVKCYAWEKSFESRIQGIRNE 511
Query: 877 NASPFFQT---FAANEWLIQRLETLSATVISSAAFCMV---LLPPGTFTPGFIGMALSYG 930
S F + A N +++ + + T++S F ++ L P FT + L
Sbjct: 512 ELSWFRKAQLLSAFNSFILNSIPVV-VTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSP 570
Query: 931 LSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPP--PNWPVVGKVDI 988
L++ +L+ + N AN +S++R+ + + + E + PP P P + +
Sbjct: 571 LNMLPNLLSQVVN----AN--VSLQRIEELLL----SEERILAQNPPLQPGAPAI-SIKN 619
Query: 989 CDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG 1048
+ P L I+ G + IVG TG GKT+LI A+ + A +V
Sbjct: 620 GYFSWDSKTSKP-TLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-- 676
Query: 1049 IDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREK 1108
+R +PQ +FN TVR N+ S + W + L
Sbjct: 677 ----------IRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTAL------- 719
Query: 1109 ENGLDSL-------VVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID-NATDMI 1160
++ LD L + E G N S GQ+Q + RA+ S I + D+ +++D + +
Sbjct: 720 QHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQV 779
Query: 1161 LQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219
++ E T + V +++ + ++ +S+G + E +L K GSLF +L+
Sbjct: 780 FDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK-SGSLFKKLM 837
|
Length = 1495 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 25/223 (11%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
V++ +S T G +G++G G+GKTT + +V G I++D DIS L LH R+
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA-RA 76
Query: 1062 RFGI--IPQDPTLFNG-TVRYNL--------DPLSQHTDQEIWEVLAKCHLGEAVREKEN 1110
R GI +PQ+ ++F +V NL D ++ + E++ + H+ E +R
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHI-EHLR---- 131
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR-AEF 1169
DS+ G + S G+R+ + RAL + ++LDE A +D + + +++ I
Sbjct: 132 --DSM----GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD 185
Query: 1170 ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211
+ V+ H + + C +S G L + P ++++ E
Sbjct: 186 SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 2e-11
Identities = 99/508 (19%), Positives = 171/508 (33%), Gaps = 44/508 (8%)
Query: 663 GEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFL 722
G G L A + H + + Q S S L ++ LL + +F
Sbjct: 27 GLAGGLAIIALLASINNAIHEENFLGQGSLF---------SFGGLCLLALLFRIGADIF- 76
Query: 723 MSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFS 782
G+ +L L + AP+ D ++ ++ D+ ++ F
Sbjct: 77 ------PAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQIN-AFLFI 129
Query: 783 LIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSL 842
A + + LA ++ + ++I I + Q F + +
Sbjct: 130 FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDA 189
Query: 843 VANHLAESIAGAMTIRAFEEEDRFFAKN------LDLIDTNASPFFQTFAANEWLIQRLE 896
H GA ++ FA ++ D + F A E Q L
Sbjct: 190 FNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEIL-IFIAAENFGQLLF 248
Query: 897 TLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVER 956
L AA + + F+ +AL Y + L M + LA I+ +R
Sbjct: 249 FLLIGCALFAAAMFASIDAAAIS-AFV-LALLY---IKGPLEMLVSALPILAQAQIACQR 303
Query: 957 LNQY---MHVPSEAPEVVEDNRPPPNWP--VVGKVDICDLQIRYRP---DSPLVLKGISC 1008
L + + P E+ + + V +++ D+ + + L I
Sbjct: 304 LADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDL 363
Query: 1009 TFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQ 1068
G + IVG G GK+TL L P G+IL+DG +S D R F I
Sbjct: 364 RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFA 423
Query: 1069 DPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128
D LF+ + D + + L + + + V+ ++ G + + S GQ+
Sbjct: 424 DFHLFDDLIGP--DEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQ 476
Query: 1129 QLFCLGRALLRRSRILVLDEATASIDNA 1156
+ L A L IL+ DE A D A
Sbjct: 477 KRLALICAWLEDRPILLFDEWAADQDPA 504
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-11
Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 25/184 (13%)
Query: 1007 SCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGII 1066
TF G IVG +GSGK+TL+ + P G++L++G+D++ D ++
Sbjct: 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPAD--RPVSML 75
Query: 1067 PQDPTLF-NGTVRYNLD-------PLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVE 1118
Q+ LF + TV N+ L+ Q I LA+ L + L
Sbjct: 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGEL------ 129
Query: 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA--TDMI-LQKTIRAEFADCTVI 1175
S G+RQ L R L+R +L+LDE A++D A +M+ L + AE TV+
Sbjct: 130 -----SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE-TKMTVL 183
Query: 1176 TVAH 1179
V H
Sbjct: 184 MVTH 187
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 31/225 (13%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE--P---AGGKILVDGIDI--SKLG 1055
LK I+ +G +G GK+TL+ R+ E P A G+IL+DG +I K
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 1056 LHDLRSRFGIIPQDPTLFNGTVRYNL-------DPLSQ-HTDQEIWEVLAKCHLGEAVRE 1107
+ LR++ G++ Q PT F ++ N+ + LS+ D+ + L K L V++
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD 148
Query: 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA 1167
K + + G + S GQ+Q C+ R + R +L+LDE +++D + +++ I
Sbjct: 149 KLH-------QSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITE 201
Query: 1168 EFADCTVITVAHRIPTVMDCT-----MVLAISDGKLAEYDEPMKL 1207
D TV+ V H + C+ M L G+L E+ +
Sbjct: 202 LKQDYTVVIVTHNMQQAARCSDYTAFMYL----GELIEFGNTDTI 242
|
Length = 260 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 3e-11
Identities = 52/205 (25%), Positives = 83/205 (40%), Gaps = 29/205 (14%)
Query: 992 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI 1051
+ R +L +S T G + I+G G+GK+TL+ AL + P G++ ++G +
Sbjct: 7 NLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL 66
Query: 1052 SKLGLHDLRSRFGIIPQDPTL-FNGTV-------RYNLDPLSQHTDQEIWEVLAKCHLGE 1103
+ +L R ++PQ +L F TV R D + LA+
Sbjct: 67 ADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQV---- 122
Query: 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS------RILVLDEATASIDNAT 1157
L L D S G++Q L R L + R L+LDE T+++D A
Sbjct: 123 -------DLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH 175
Query: 1158 DMILQKTIRAEFAD---CTVITVAH 1179
+ + R + A VI V H
Sbjct: 176 QHHVLRLAR-QLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 4e-11
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I K+ S + + P ++NIS ++PG+KV I G GSGKS+LL A+ V + G+I
Sbjct: 3 IEFKNVSLRYRPNL-PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI 61
Query: 688 L 688
L
Sbjct: 62 L 62
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 4e-11
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+K+ SFS+ ++P + +ISL ++ G+ V I G GSGKSTLL + G + T G +L
Sbjct: 1 ELKNLSFSYP-DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 689 QNSWLAANVENPNVSTLRLIVVYLLIGFV 717
V+ +++ L L + +G V
Sbjct: 60 --------VDGKDLTKLSLKELRRKVGLV 80
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 4e-11
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 40/230 (17%)
Query: 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLR 1060
L +K S E G I+G +GSGK+T++ L RL+EP G++L+DG+DI+K+ +LR
Sbjct: 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101
Query: 1061 -----------SRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKE 1109
F ++P L N L ++ +E + L +A+R+
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERRE--KAL------DALRQV- 152
Query: 1110 NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF 1169
GL++ S G RQ L RAL IL++DEA +++D IR E
Sbjct: 153 -GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALD--------PLIRTEM 203
Query: 1170 AD----------CTVITVAHRIPTVMDCTMVLAI-SDGKLAEYDEPMKLM 1208
D T++ ++H + M +AI +G++ + P +++
Sbjct: 204 QDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 4e-11
Identities = 47/169 (27%), Positives = 68/169 (40%), Gaps = 24/169 (14%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L+ IS + E G + +VG +G GK+TL+ + L P G++LVDG ++
Sbjct: 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT-----GPGP 73
Query: 1062 RFGIIPQDPTLFN-GTVRYN--LDPLSQHTD-----QEIWEVLAKCHLGEAVREKENGLD 1113
G + Q L TV N L Q + E+L L + L
Sbjct: 74 DRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQL- 132
Query: 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQ 1162
S G RQ L RAL +L+LDE +++D T LQ
Sbjct: 133 ----------SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQ 171
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 4e-11
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 39/202 (19%)
Query: 999 SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD 1058
+ G I+G +GSGK+T + L RL+EP G+I +DG +I K +
Sbjct: 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE 64
Query: 1059 L----RSRFGIIPQDPTLF-NGTVRYN--LDPLSQHTDQEIWEVLAKCHLGEAVREKENG 1111
L R + G++ Q LF + T+ N L P ++ KE
Sbjct: 65 LREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQ--------------ERKEKA 110
Query: 1112 LDSLVVEDGSNW--------SMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQK 1163
L+ L + + S G +Q L RAL IL++DEA + A D +++
Sbjct: 111 LELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS----ALDPLIRD 166
Query: 1164 TIRAEFADC------TVITVAH 1179
+++ E T++ + H
Sbjct: 167 SMQDELKKLQATLQKTIVFITH 188
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 5e-11
Identities = 81/375 (21%), Positives = 152/375 (40%), Gaps = 75/375 (20%)
Query: 351 YVLAITLFVAKILESLSQRQWYFRSRLI---GLKVRSLLTAAIYKKQLRLSNAARLMHSG 407
+VLAI + +A + + + + RS + G K +L+A ++++ L L AR G
Sbjct: 187 WVLAIGVALAIVFDFVLK---TLRSYFLDVAGKKADLILSAKLFERVLGLRMEARPASVG 243
Query: 408 G------------EIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILF----HAVGL 451
+ T+ A + + PF + L+++ V +
Sbjct: 244 SFANQLREFESVRDFFTSATLTA--LIDLPFAL-----------LFLLVIAIIGGPLVWV 290
Query: 452 ATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHF 511
+A ++++ +L PL++L + M +R E+L ++ +K E F
Sbjct: 291 PLVAIPLILLPGLLLQRPLSRLA----EESMRESAQRNAVLVESLSGLETIKALNAEGRF 346
Query: 512 KNAIEILRNVEYKWLSAV--------QLRKAYNTFLFWSSPV--LVSTAT--FGACYFLN 559
+ +W V + R N ++ + LVS A G
Sbjct: 347 ----------QRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVG------ 390
Query: 560 VPLYASNVFT---FVATLRL---VQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSM 613
V L + T +A + L P+ + ++ + QA A + ++ P +
Sbjct: 391 VYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP- 449
Query: 614 NIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLL 673
+ + + I ++ SF++ P + N+SL +RPG+KVAI G +GSGKSTLL
Sbjct: 450 EGTRFLHRPRLQGEIEFRNVSFAYPGQE-TPALDNVSLTIRPGEKVAIIGRIGSGKSTLL 508
Query: 674 AAILGEVPHTQGTIL 688
+LG T+G++L
Sbjct: 509 KLLLGLYQPTEGSVL 523
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 6e-11
Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 22/224 (9%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L ++ G + ++G +GSGK+TL+ + L +P G+I ++G D +++ D
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD--R 72
Query: 1062 RFGIIPQDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120
+ G + Q LF TVR N+ + + + H ++ + L LV +G
Sbjct: 73 KIGFVFQHYALFKHLTVRDNI----------AFGLEIRKHPKAKIKARVEELLELVQLEG 122
Query: 1121 ------SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA--EFADC 1172
+ S GQRQ L RAL ++L+LDE ++D L+ +R +
Sbjct: 123 LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182
Query: 1173 TVITVAHRIPTVMDCT-MVLAISDGKLAEYDEPMKLMKREGSLF 1215
T + V H M+ ++ +S+GK+ + P ++ + F
Sbjct: 183 TTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 7e-11
Identities = 49/209 (23%), Positives = 87/209 (41%), Gaps = 27/209 (12%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L +S + G +G +G G+GK+T + + + P G + V G D+ + +++
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPK-EVQR 75
Query: 1062 RFGIIPQDPTL-----------FNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKEN 1110
G +P+ L F + Y + Q Q + E++ L +K
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGI-YGMK--GQLLKQRVEEMIELVGLRPEQHKKIG 132
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA 1170
L S G RQ L +AL+ ++L+LDE T +D + ++ I+
Sbjct: 133 QL-----------SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK 181
Query: 1171 DCTVITVAHRIPTVMD-CTMVLAISDGKL 1198
D T+I H + V C V+ I+ GK+
Sbjct: 182 DKTIILSTHIMQEVEAICDRVIIINKGKI 210
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 9e-11
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
I++ SF + + + N+SL ++ G+ VA+ G GSGKSTLL AI G + T G IL
Sbjct: 1 EIENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 689 QNSWLAANVENPNVSTLRLIVVYL 712
++ + LR + Y+
Sbjct: 58 ---IDGKDIAKLPLEELRRRIGYV 78
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 9e-11
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 20/179 (11%)
Query: 992 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI 1051
+ Y +L IS + G I G +G GK+TL+ + L+ P G +L +G DI
Sbjct: 12 NVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDI 71
Query: 1052 SKLGLHDLRSRFGIIPQDPTLFNGTVRYNL----DPLSQHTD-QEIWEVLAKCHLGEAVR 1106
S L R + Q PTLF TV NL +Q D + L + L + +
Sbjct: 72 STLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTIL 131
Query: 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID-----NATDMI 1160
K + L S G++Q L R L ++L+LDE T+++D N ++I
Sbjct: 132 TK--NIAEL--------SGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEII 180
|
Length = 225 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 9e-11
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 32/207 (15%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD-LRS 1061
+S + + G ++G G+GK+TL+ LF L +P G+I VDG ++ D +R
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79
Query: 1062 RFGIIPQDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVRE--KENGLD---SL 1115
G++ Q L TV N+ L + + ++E + GL
Sbjct: 80 GIGMVHQHFMLVPTLTVAENI-ILGLEPSKGGLIDRRQAR--ARIKELSERYGLPVDPDA 136
Query: 1116 VVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATA-----SIDNATDMILQKTIRAEFA 1170
V D S+G++Q + +AL R +R+L+LDE TA D L + +R A
Sbjct: 137 KVAD---LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADE-----LFEILR-RLA 187
Query: 1171 DC--TVITVAHRIPTVMDCTMVLAISD 1195
T+I + H++ VM AI+D
Sbjct: 188 AEGKTIIFITHKLKEVM------AIAD 208
|
Length = 501 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 1e-10
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I +++ S ++ K +++ISL + PG ++ + G G+GKSTLL I GE+ +G +
Sbjct: 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 688 LQNS 691
S
Sbjct: 58 TWGS 61
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 47/156 (30%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062
+ G+S + + G +G+VG +G GK+TL + L EP G+IL +G DI+KL
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL-------- 80
Query: 1063 FGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKE----NGLDSLVVE 1118
+ + + E+L K L E + +G
Sbjct: 81 ---------------------SKEERRERVLELLEKVGLPEEFLYRYPHELSG------- 112
Query: 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
GQRQ + RAL +++V DE +++D
Sbjct: 113 -------GQRQRIGIARALALNPKLIVADEPVSALD 141
|
Length = 268 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 20/227 (8%)
Query: 997 PDSPL-VLKGISCTFEGGHKIGIVGRTGSGKTT---LIGALFRLVEPAGGKILVDGIDIS 1052
PDS L IS + G ++G GSGK+T LI L + KI VDGI ++
Sbjct: 16 PDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLT 75
Query: 1053 KLGLHDLRSRFGIIPQDP-TLFNGT-----VRYNLDPLSQHTDQEIWEVLAKCHLGEAVR 1106
+ D+R + GI+ Q+P F G V + L+ E+ +++ V
Sbjct: 76 AKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLEN-RAVPRPEMIKIVRD------VL 128
Query: 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR 1166
LD + E +N S GQ+Q + L +I++LDE+T+ +D A + K IR
Sbjct: 129 ADVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187
Query: 1167 --AEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKRE 1211
+ + TVI++ H I VL + DGKL P+++ +
Sbjct: 188 KLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKV 234
|
Length = 282 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-10
Identities = 62/185 (33%), Positives = 88/185 (47%), Gaps = 32/185 (17%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG---LHDL 1059
+ S E G I+G +GSGK+TL+ L RL+EP G+ILVDG DI+KL L +L
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 1060 RSR--------FGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENG 1111
R + F ++P L N V + L+ Q + E A L E V G
Sbjct: 104 RRKKISMVFQSFALLPHRTVLEN--VAFGLE--VQGVPKAEREERALEAL-ELV-----G 153
Query: 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID--NATDM---------I 1160
L+ + + S G +Q L RAL IL++DEA +++D T+M
Sbjct: 154 LEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK 213
Query: 1161 LQKTI 1165
L+KTI
Sbjct: 214 LKKTI 218
|
Length = 386 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 28/203 (13%)
Query: 991 LQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGID 1050
L + Y +L +S + G ++G G GK+TL+ RL+ P G + +
Sbjct: 8 LTVGYGTKR--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKP 65
Query: 1051 ISKLGLHDLRSRFGIIPQDPTLFNG-TVR----YNLDP-------LSQHTDQEIWEVLAK 1098
IS L L R ++PQ G TVR Y P LS + + + + +
Sbjct: 66 ISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQ 125
Query: 1099 CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158
++ L ++ S GQRQ L L + + +++LDE T +D
Sbjct: 126 TR-----------INHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQ 174
Query: 1159 MILQKTIRAEFADC--TVITVAH 1179
+ L + +R E TV+TV H
Sbjct: 175 VELMRLMR-ELNTQGKTVVTVLH 196
|
Length = 255 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 11/101 (10%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I ++ +FS++E KP +++I+ ++PG+ VAI G G+GK+TL+ ++ +G I
Sbjct: 3 IEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 688 LQNSWLAANVENPNVSTLRLIVVYLLIGFVST-LFLMSRSL 727
L ++ ++ + + +IG V FL S ++
Sbjct: 61 L--------IDGIDIRDISRKSLRSMIGVVLQDTFLFSGTI 93
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 20/202 (9%)
Query: 1007 SCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGII 1066
G + I+G +G+GK+TL+ + +EPA G I V+ GL + ++
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSML 75
Query: 1067 PQDPTLFNG-TVRYN----LDP-LSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120
Q+ LF TVR N L P L + +Q+ V A + G+ +
Sbjct: 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQV---------GIADYLDRLP 126
Query: 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA--TDMILQKTIRAEFADCTVITVA 1178
S GQRQ L R L+R + IL+LDE +++D +M+ T++ V
Sbjct: 127 EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVT 186
Query: 1179 HRIPTVMD-CTMVLAISDGKLA 1199
H + + + +S GK+
Sbjct: 187 HHLSDARAIASQIAVVSQGKIK 208
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 59/213 (27%), Positives = 105/213 (49%), Gaps = 28/213 (13%)
Query: 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFR---LVEPA 1040
GK+ + DL + Y LK I+ E ++G +G GK+T + L R L+
Sbjct: 2 GKISVKDLDLFY--GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV 59
Query: 1041 --GGKILVDGIDI--SKLGLHDLRSRFGIIPQDPTLFNGTVRYNL--DPLSQ--HTDQEI 1092
G++L+DG DI S + ++ LR R G++ Q P F ++ N+ P + +++
Sbjct: 60 KIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKL 119
Query: 1093 WEVLAKCHLGEAV------REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVL 1146
E++ K G A+ R K++ L L S GQ+Q C+ RAL +L++
Sbjct: 120 DEIVEKSLKGAALWDEVKDRLKKSAL-GL--------SGGQQQRLCIARALAVEPEVLLM 170
Query: 1147 DEATASIDNATDMILQKTIRAEFADCTVITVAH 1179
DE T+++D + + +++ I+ D T++ V H
Sbjct: 171 DEPTSALDPISTLKIEELIQELKKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 2e-10
Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 28/224 (12%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL--VEPAG---GKILVDGIDISKLGLH 1057
+K +S F I+G +G GK+T++ ++ R+ + P+ GKIL+D DI G+
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 1058 --DLRSRFGIIPQDPTLF-------NGTVRYNLD-PLSQHTDQEIWEV-LAKCHLGEAVR 1106
+R R G++ Q P F N Y L+ +++ EI E L + L + V+
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK 139
Query: 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR 1166
++ + S GQ+Q C+ R + + ++++DE +++D + + +++ I
Sbjct: 140 DRLKS-------NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE 192
Query: 1167 AEFADCTVITVAHRI---PTVMDCTMVLAISDGKLAEYDEPMKL 1207
T+I V H + V D T + G L E E K+
Sbjct: 193 ELKEKYTIIIVTHNMQQAARVSDYTAFFYM--GDLVECGETKKI 234
|
Length = 252 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 59/237 (24%), Positives = 99/237 (41%), Gaps = 29/237 (12%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL-----VEP 1039
K++ L Y L IS FE ++G +G GK+T + L R+
Sbjct: 6 KMEARGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR 63
Query: 1040 AGGKILVDGIDI--SKLGLHDLRSRFGIIPQDPTLFNGTV--------RYNLDPLSQHTD 1089
G+IL+DG +I + + +LR R G++ Q P F ++ R N +
Sbjct: 64 VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLA 123
Query: 1090 QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEA 1149
+ + L L + V+++ + E S GQ+Q C+ RAL +L++DE
Sbjct: 124 ERVERSLRHAALWDEVKDRLH-------ESALGLSGGQQQRLCIARALAVEPEVLLMDEP 176
Query: 1150 TASIDNATDMILQKTIRAEFADCTVITVAHRI---PTVMDCTMVLAISDGKLAEYDE 1203
+++D +++ I A T+I V H + V D T + GKL E
Sbjct: 177 ASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYM--GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 63/238 (26%), Positives = 97/238 (40%), Gaps = 40/238 (16%)
Query: 995 YRPDSPLVLK---GISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI------- 1044
+ P LK +S G I I+G+TGSGKTT I L L+ P G I
Sbjct: 12 FNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE 71
Query: 1045 -----------LVDGIDISKL------GLHDLRSRFGIIPQ--DPTLFNGTVRYNL--DP 1083
+++ + I K + ++R R G++ Q + LF T+ ++ P
Sbjct: 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGP 131
Query: 1084 LSQHTDQEIWEVLAKCHLGEAVREKENGLD-SLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142
+S +E + A ++ E V GLD S + S GQ++ L L
Sbjct: 132 VSMGVSKEEAKKRAAKYI-ELV-----GLDESYLQRSPFELSGGQKRRVALAGILAMEPD 185
Query: 1143 ILVLDEATASID-NATDMILQKTIRAEFADCTVITVAHRIPTVMDCT-MVLAISDGKL 1198
LV DE TA +D IL+ T+I V H + V++ T + DGK+
Sbjct: 186 FLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKI 243
|
Length = 305 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-10
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 19/172 (11%)
Query: 1018 IVGRTGSGKTTLIGALFRLVEPAGGKILVDG---IDISK-LGLHDLRSRFGIIPQDPTLF 1073
+ G +GSGKT+LI + L P G+I ++G +D K + L + R G + QD LF
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF 88
Query: 1074 -NGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132
+ TVR NL + + + V G++ L+ S G++Q
Sbjct: 89 PHYTVRGNLRYGMWKSMRA--------QFDQLVALL--GIEHLLDRYPGTLSGGEKQRVA 138
Query: 1133 LGRALLRRSRILVLDEATASIDNAT-DMILQ--KTIRAEFADCTVITVAHRI 1181
+GRALL +L++DE AS+D IL + +R E + ++ V+H +
Sbjct: 139 IGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSL 189
|
Length = 352 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-10
Identities = 65/385 (16%), Positives = 144/385 (37%), Gaps = 29/385 (7%)
Query: 319 ALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKI--LESLSQRQWYFRSR 376
+ +L + L + + G + + + L V + L + + +
Sbjct: 20 GVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICS---FVSTY 76
Query: 377 LIGLKVRSLLT---AAIYKKQLRLSNAARLMHSGGEIMNYVTVDA-----YRIGEFPFWF 428
L+ ++ +++K L L + G +++ +T D+ F
Sbjct: 77 LLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLV 136
Query: 429 HQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDER 488
+ ++ + I+L + T+ +V++ + + ++K + ++ + +
Sbjct: 137 RE----TLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQV 192
Query: 489 LKACSEALVNMKVLKLYAWETH----FKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSS- 543
E L +V+KL+ + + F R + K SA + + +
Sbjct: 193 TTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLAL 252
Query: 544 PVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVN 603
V++ A F A L A + F+ + + P++ + +V + A +
Sbjct: 253 AVVLFIALFQA---QAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFT 309
Query: 604 FLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICG 663
L++P + R IE + ++ +F + +P + +ISL + PG+ VA+ G
Sbjct: 310 LLDSPPEKDTGTRA---IERARGDVEFRNVTFRYP-GRDRPALDSISLVIEPGETVALVG 365
Query: 664 EVGSGKSTLLAAILGEVPHTQGTIL 688
GSGKSTL+ I G IL
Sbjct: 366 RSGSGKSTLVNLIPRFYEPDSGQIL 390
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 12/99 (12%)
Query: 626 HVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
I ++ SFS+ P + N+SL +R G+KVAI G VGSGKSTLL + G T G
Sbjct: 1 GRIEFRNVSFSYPNQE-IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 686 TILQNSWLAANVENPNVSTLRLIVVYLLIGFV---STLF 721
++L ++ ++ L + IG+V TLF
Sbjct: 60 SVL--------LDGTDIRQLDPADLRRNIGYVPQDVTLF 90
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 45/222 (20%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTT---LIGALFRLVEPAGGKILVDGIDI---SKLG 1055
VL I+ G + + G +GSGKTT LIG L + E G + V G ++ S+
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE---GSLKVLGQELYGASEKE 76
Query: 1056 LHDLRSRFGIIPQDPTLFNG-TVRYN----LDPLSQHTDQEIWEVLAKCH-------LGE 1103
L LR G I Q L T R N L+ L + + E + LG+
Sbjct: 77 LVQLRRNIGYIFQAHNLLGFLTARQNVQMALE-LQPNLSYQ--EARERARAMLEAVGLGD 133
Query: 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM---- 1159
+ + L S GQ+Q + RAL+ R ++++ DE TA++D+ +
Sbjct: 134 HLDYYPHNL-----------SGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE 182
Query: 1160 ILQKTIRAEFADCTVITVAH--RIPTVMDCTMVLAISDGKLA 1199
++QK A CT++ V H RI V D ++ + DGKL
Sbjct: 183 LMQK--LAREQGCTILIVTHDNRILDVAD--RIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 33/169 (19%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS- 1061
+K +S T G + I+G GSGK+TL L ++EP G++L+D + G + RS
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH-FGDYSYRSQ 87
Query: 1062 RFGIIPQDPT-----------LFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKEN 1110
R +I QDP+ + + +R N D + +++I E L ++
Sbjct: 88 RIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETL-----------RQV 136
Query: 1111 GLDSLVVEDGSNW-----SMGQRQLFCLGRALLRRSRILVLDEATASID 1154
GL + D +++ + GQ+Q L RAL+ R ++++ DEA AS+D
Sbjct: 137 GL----LPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 61/241 (25%), Positives = 96/241 (39%), Gaps = 51/241 (21%)
Query: 992 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI 1051
+ + L G+S + G ++G +G GKTTL+ + P G+IL+DG DI
Sbjct: 5 NVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI 64
Query: 1052 SKLGLHDLRSRFGIIPQDPTLF-NGTVRYNLD-PLS------QHTDQEIWEVLAKCHLGE 1103
+ L H + + Q+ LF + TV N+ L + + E L L
Sbjct: 65 TNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEG 122
Query: 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQK 1163
K + L S GQ+Q + RAL+ ++L+LDE A D+ L+K
Sbjct: 123 YANRKPSQL-----------SGGQQQRVAIARALVNEPKVLLLDEPLG----ALDLKLRK 167
Query: 1164 TIRAEFAD------CTVITVAHRIPTVMDCTMVLAISD-------GKLAE-------YDE 1203
++ E T + V H D L +SD GK+ + Y+E
Sbjct: 168 DMQLELKRLQKELGITFVFVTH------DQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221
Query: 1204 P 1204
P
Sbjct: 222 P 222
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 6e-10
Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 11/169 (6%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
DL Y L I+ +I ++G G+GK+TL +++P G +L+ G
Sbjct: 8 DLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGE 66
Query: 1050 DISKLGLHDLRSRFGIIPQDP--TLFNGTVRYNL--DPLSQHTDQEIWEVLAKCHLGEAV 1105
I+K + ++R G++ Q+P +F+ TV ++ P++ D+E + A+
Sbjct: 67 PITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEET----VAHRVSSAL 122
Query: 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
GL+ L + S G+++ + + ++LVLDE TA +D
Sbjct: 123 HML--GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLD 169
|
Length = 277 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 6e-10
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 19/212 (8%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL---GLHD 1058
VL +S + + G + ++GR+G GK+TL L L P+ G + G ++KL
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 1059 LRSRFGIIPQD-PTLFN--GTVRYNLD-PLSQHTDQEIWEVLAKC-HLGEAVREKENGLD 1113
R ++ QD + N TVR + PL + E LA+ + AV ++ LD
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146
Query: 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID---NATDMILQKTIRAEFA 1170
S GQ Q CL RAL ++L+LDEA +++D A + L K ++ +F
Sbjct: 147 KR----PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFG 202
Query: 1171 D-CTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200
C IT H + V C V+ + +G++ E
Sbjct: 203 TACLFIT--HDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 6e-10
Identities = 52/215 (24%), Positives = 90/215 (41%), Gaps = 37/215 (17%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
LK IS G ++GI+G G+GK+TL+ + + +P GK+ V G ++ L +L +
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-KVA--PLIELGA 98
Query: 1062 RFGIIPQDPTLFNGTVRYN-------LDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDS 1114
F DP L T R N L + D+++ E++ LG+ + + S
Sbjct: 99 GF-----DPEL---TGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSS 150
Query: 1115 LVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR--AEFA-- 1170
M R F + + IL+LDE A D A +K + E
Sbjct: 151 ---------GMYARLAFSVATHV--EPDILLLDEVLAVGDAA---FQEKCLERLNELVEK 196
Query: 1171 DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEP 1204
+ T++ V+H + + C + + G++ P
Sbjct: 197 NKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSP 231
|
Length = 249 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 7e-10
Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 37/156 (23%)
Query: 1018 IVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG---LHDLRSR--------FGII 1066
I+G +GSGK+TL+ + RL+EP GK+L+DG DI+ + L +LR + F ++
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 1067 PQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNW--- 1123
P L N V + L EV + A RE E ++L + W
Sbjct: 115 PHRTVLEN--VAFGL------------EV---QGVPRAERE-ERAAEALELVGLEGWEHK 156
Query: 1124 -----SMGQRQLFCLGRALLRRSRILVLDEATASID 1154
S G +Q L RAL IL++DEA +++D
Sbjct: 157 YPDELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 8e-10
Identities = 59/201 (29%), Positives = 86/201 (42%), Gaps = 26/201 (12%)
Query: 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLR 1060
++ G+S T G + + G GSGKTTL+ + L+ PA G I +DG DI D+
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI---DDPDVA 72
Query: 1061 SRFGII-PQD---PTLFNGTVRYNL----DPLSQHTDQEIWEVLAKCHLGEAVREKENGL 1112
+ ++ P L TV NL L + +I L EAV GL
Sbjct: 73 EACHYLGHRNAMKPAL---TVAENLEFWAAFLGGE-ELDIAAAL------EAV-----GL 117
Query: 1113 DSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADC 1172
L S GQ++ L R L+ I +LDE TA++D A + + IRA A
Sbjct: 118 APLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQG 177
Query: 1173 TVITVAHRIPTVMDCTMVLAI 1193
++ A IP + L +
Sbjct: 178 GIVIAATHIPLGLPGARELDL 198
|
Length = 207 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 8e-10
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 31/204 (15%)
Query: 1001 LVLKGISCTFEG-------------GHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD 1047
L L+G+S +F+G G I+G G+GKTT++ + P G +L
Sbjct: 3 LYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFG 62
Query: 1048 GIDISKLGLHDLRSRFGIIP--QDPTLF-NGTVRYNLDPLSQHTDQEIWEVLAKCHLGEA 1104
G D++ L H + +R GI Q PT+F N TV NL+ L+ D+ ++ L L
Sbjct: 63 GTDLTGLPEHQI-ARAGIGRKFQKPTVFENLTVFENLE-LALPRDKSVFASLFF-RLSAE 119
Query: 1105 VREK------ENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158
+++ GL S GQ+Q +G L++ ++L+LDE A + TD
Sbjct: 120 EKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM---TD 176
Query: 1159 MILQKT---IRAEFADCTVITVAH 1179
+KT +++ +V+ V H
Sbjct: 177 EETEKTAELLKSLAGKHSVVVVEH 200
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 9e-10
Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 17/210 (8%)
Query: 946 TLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKG 1005
TL + ++ +LN+ P +A + P+W +++ ++ Y D+ +
Sbjct: 288 TLLSAQVAFNKLNKLALAPYKAE--FPRPQAFPDWQ---TLELRNVTFAY-QDNGFSVGP 341
Query: 1006 ISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065
I+ T + G + ++G GSGK+TL L L +P G+IL+DG ++ D R F
Sbjct: 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401
Query: 1066 IPQDPTLFNGTVRYNLDPLSQHTDQEIWEV-LAKCHLGEAVREKENGLDSLVVEDGSNWS 1124
+ D LF+ L P + + + E L + + + ++ + +L S
Sbjct: 402 VFTDFHLFDQL----LGPEGKPANPALVEKWLERLKMAHKLELEDGRISNL------KLS 451
Query: 1125 MGQRQLFCLGRALLRRSRILVLDEATASID 1154
GQ++ L AL IL+LDE A D
Sbjct: 452 KGQKKRLALLLALAEERDILLLDEWAADQD 481
|
Length = 547 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
+I +K+ S ++ +++++LE+ G+ VAI G G+GKSTLL ++ G V T G
Sbjct: 3 MIEVKNLSKTY--PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 687 ILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLF-LMSRS--LSSVVLGIRSSKSLFSQ 743
IL N + LR + IG + F L+ R L +V+LG S +
Sbjct: 61 ILFNG---VQITKLKGKELRKLRRD--IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRS 115
Query: 744 LLN 746
L
Sbjct: 116 LFG 118
|
Length = 258 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 21/187 (11%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L ++ G + ++G +G GKTT + + L EP G+I + G D++ L D R
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-RD 73
Query: 1062 RFGIIPQDPTLF-NGTVRYNLD-PL-SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVE 1118
++ Q+ L+ + TV N+ L + ++ E+ + + + E+ LD
Sbjct: 74 -IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKD--EIDERVREVAELLQIEHLLDRKP-- 128
Query: 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA------DC 1172
S GQRQ LGRA++R ++ ++DE +++D L+ +RAE
Sbjct: 129 --KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK----LRVQMRAELKRLQQRLGT 182
Query: 1173 TVITVAH 1179
T I V H
Sbjct: 183 TTIYVTH 189
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
V + ++ GH I+G G GK+TL+ L RL+ PA G + +DG I ++
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1062 RFGIIPQDPTLFNG-TV-------RYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLD 1113
R G++ Q+ T TV RY PL +E E + K A++ G+
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTK-----AMQ--ATGIT 134
Query: 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
L + S GQRQ + L + + I++LDE T +D
Sbjct: 135 HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 12/160 (7%)
Query: 998 DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH 1057
D + G+S T G + + G GSGKTTL+ L L P G++L++G +
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS 70
Query: 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLSQ-HTDQEIWEVLAKCHLGEAVREKENGLDSLV 1116
R + +V NL H+D+++ E LA+ L NG +
Sbjct: 71 IARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGL--------NGFEDRP 122
Query: 1117 VEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA 1156
V + S GQ++ L R LL + +LDE T ++D A
Sbjct: 123 V---AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 2e-09
Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 22/214 (10%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGG-----KILVDGIDI-SKLG 1055
VL +S F ++G TGSGKTT + L R+ + G +L+ G I +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 1056 LHDLRSRFGIIPQDPTLFNGTVRYN-LDPLSQHT---DQEIWEV----LAKCHLGEAVRE 1107
+ + R R G++ Q P F ++ N L + H +E V L + L +AV++
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155
Query: 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA 1167
+ + + S GQ+QL CL R L +L+LDE T+++D T +++ IR+
Sbjct: 156 R-------LSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRS 208
Query: 1168 EFADCTVITVAHRIPTVMDCTMVLAI-SDGKLAE 1200
TVI V H + + A+ DG+L E
Sbjct: 209 LADRLTVIIVTHNLAQAARISDRAALFFDGRLVE 242
|
Length = 276 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 26/207 (12%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKI 1044
+L++ Y S V+KG+ ++G +G GK+TL+ RL+E G++
Sbjct: 9 NLRVYY--GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV 66
Query: 1045 LVDGIDI--SKLGLHDLRSRFGIIPQDPTLF-------NGTVRYNLDPL---SQHTDQEI 1092
+ G +I + ++R G++ Q P F N + L+ L + D+ +
Sbjct: 67 RLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERV 126
Query: 1093 WEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATAS 1152
L K L + V+++ N + SN S GQRQ + RAL + +IL++DE TA+
Sbjct: 127 EWALKKAALWDEVKDRLN-------DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTAN 179
Query: 1153 IDNATDMILQKTIRAEFADCTVITVAH 1179
ID +++ + + T++ V H
Sbjct: 180 IDPVGTAKIEELLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 52/238 (21%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG----LHD 1058
+ ++ FE G IVG+TGSGK+TLI + L++P G + VD I I+ +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 1059 LRSRFGIIPQDP--TLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLV 1116
+R R G++ Q P LF TV + ++ + EV H L+
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAH-------------RLL 129
Query: 1117 VEDG--------SNWSM--GQRQLFCLGRALLRRSRILVLDEATASIDNATD---MILQK 1163
++ G S + M GQ + + L I+VLDE TA +D + M L K
Sbjct: 130 MDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLK 189
Query: 1164 TIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221
+++ + + T+I V+H + V A Y + + +MK G +V +
Sbjct: 190 SLQTD-ENKTIILVSHDMNEV--------------ARYADEVIVMKE-----GSIVSQ 227
|
Length = 286 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-09
Identities = 103/531 (19%), Positives = 200/531 (37%), Gaps = 57/531 (10%)
Query: 693 LAANVENPNVSTLRLIVVYLL-IGFVSTLFLMSRSLSSVVLGIRSSKSLF---SQLLNSL 748
L A + + T ++ L + LF++S +S + L ++ S+ + +
Sbjct: 32 LLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKI 91
Query: 749 FRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGAT----TNAYSNLGVLAVVT 804
P+ + R+L+ ++SD+ + + AY L L+
Sbjct: 92 LDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAY--LAYLSPKM 149
Query: 805 WQVLFVSIPVIFLA--IRLQRYY--FATAKELM-RLNGTTKSLVANH----LAESIAGAM 855
+ + V I V + + R Y A A+E +L ++++ L A +
Sbjct: 150 FLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYV 209
Query: 856 TIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPP 915
+ + + + ++ +T F A N + + F + L
Sbjct: 210 HNNLYIPDAQEYRHHIIRANT-----FHLLAVN------WSNIMLLGLIGLVFWLALSLG 258
Query: 916 GTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNR 975
T + L L L + L+ ++ TL ++ ++ + AP + R
Sbjct: 259 WASTNVAATIVLVL-LFLRTPLLSAVGILPTLLTAQVAFNKIAKL----ELAPYKADFPR 313
Query: 976 PPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFR 1035
P +P +++ +++ Y D+ + I+ T + G + ++G GSGK+TL L
Sbjct: 314 PQA-FPDWKTLELRNVRFAY-QDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTG 371
Query: 1036 LVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEV 1095
L +P G+IL+DG +S L D R F + D LF+ + Q ++ + +
Sbjct: 372 LYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWL-QR 430
Query: 1096 LAKCHLGEAVREKENGLDSLVVEDGS----NWSMGQRQLFCLGRALLRRSRILVLDEATA 1151
L H + DG S GQ++ L ALL ILVLDE A
Sbjct: 431 LELAHK-------------TSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAA 477
Query: 1152 SIDNATDMILQKTI--RAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAE 1200
D A + + + T+ ++H + +L + +G+L+E
Sbjct: 478 DQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 54/196 (27%)
Query: 988 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD 1047
+ +L + PD ++LK +S + G ++ I G +G+GK++L AL L G+I
Sbjct: 3 LENLSL-ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI--- 58
Query: 1048 GIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEI--W-EVLAKCHLGEA 1104
DL +PQ P L GT+R +Q I W +VL
Sbjct: 59 ----GMPEGEDLL----FLPQRPYLPLGTLR----------EQLIYPWDDVL-------- 92
Query: 1105 VREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKT 1164
S G++Q R LL + + + LDEAT+++D ++ L +
Sbjct: 93 -------------------SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQL 133
Query: 1165 IRAEFADCTVITVAHR 1180
++ TVI+V HR
Sbjct: 134 LKELGI--TVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 51/161 (31%), Positives = 75/161 (46%), Gaps = 19/161 (11%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062
L +S G + ++G +GSGKTTL+ + L P G IL G D + ++ R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATD---VPVQER 74
Query: 1063 -FGIIPQDPTLF-NGTVRYNL------DPLSQHTDQEIWEVLAKCH-LGEAVREKENGLD 1113
G + Q LF + TV N+ P S+ + E+ AK H L + V+ LD
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEA--EIRAKVHELLKLVQ-----LD 127
Query: 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
L + S GQRQ L RAL ++L+LDE ++D
Sbjct: 128 WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 55/230 (23%), Positives = 109/230 (47%), Gaps = 32/230 (13%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFR---LVEPAG--GKILVDGIDI--SKLG 1055
+K + C G ++G +G GK+T++ +L R L+E G++L DG D+ ++
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 1056 LHDLRSRFGIIPQDPTLFNGTVRYNL------DPLSQHTDQEIWEVLAKCHLGEAVREKE 1109
++R R G++ Q P F ++ N+ + + D+ + L K + + ++K
Sbjct: 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKL 148
Query: 1110 NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF 1169
N E G + S GQ+Q C+ R + ++++DE +++D + + +++T+
Sbjct: 149 N-------ESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK 201
Query: 1170 ADCTVITVAHRIPT---VMDCTM------VLAISDGK---LAEYDEPMKL 1207
+ T++ V H + V D T V S GK L E++E K+
Sbjct: 202 KNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKI 251
|
Length = 269 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 53/154 (34%), Positives = 72/154 (46%), Gaps = 20/154 (12%)
Query: 1013 GHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG---LHDLRSRFGIIPQD 1069
G + +VG +GSGK+T AL RLVE GG+I+ +G I L L LR I QD
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 1070 PTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHL--GEAVREKENGLDSLV-VEDGSNW--- 1123
P +LDP Q I E L L G+A + L V + W
Sbjct: 410 PYA-------SLDP-RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP 461
Query: 1124 ---SMGQRQLFCLGRALLRRSRILVLDEATASID 1154
S GQRQ C+ RAL ++++ DEA +++D
Sbjct: 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALD 495
|
Length = 623 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 4e-09
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 593 QANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLE 652
A + L+A + S ++ P +R +S
Sbjct: 289 DGVAAAEALFAVLDAAPRPLAGKAPVT--AAPAPSLEFSGVSVAYPGRR--PALRPVSFT 344
Query: 653 VRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690
V PG++VA+ G G+GKSTLL +LG V T+G+I N
Sbjct: 345 VPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVN 382
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 5e-09
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
+I +++ + S+ ++P + +ISL V G+ A+ G G+GKSTLL AILG + + G
Sbjct: 4 MIEVENLTVSYG---NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 687 I 687
I
Sbjct: 61 I 61
|
Length = 254 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 5e-09
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
++ + S+ P + ++S EV+PG+ +AI G G+GKSTLL AILG + T G+I
Sbjct: 1 EVEDLTVSY---GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI 56
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 5e-09
Identities = 63/245 (25%), Positives = 104/245 (42%), Gaps = 25/245 (10%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG---GKILVDGIDISKLGLHDL 1059
L GI G +G+ G G+GK+TL+ L V P G G+I G + + D
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGTWDGEIYWSGSPLKASNIRDT 75
Query: 1060 -RSRFGIIPQDPTLF-NGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVV 1117
R+ II Q+ TL +V N+ EI + +N L L +
Sbjct: 76 ERAGIVIIHQELTLVPELSVAENI-----FLGNEITLPGGRMAYNAMYLRAKNLLRELQL 130
Query: 1118 EDGSN------WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR---AE 1168
+ + + GQ+QL + +AL +++R+L+LDE ++S+ IL IR A
Sbjct: 131 DADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH 190
Query: 1169 FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWSHLH 1227
C + ++H++ V C + I DG+ + M M E + +V + L+
Sbjct: 191 GVAC--VYISHKLNEVKAVCDTICVIRDGQHVA-TKDMSTMS-EDDIITMMVGREITSLY 246
Query: 1228 SAESH 1232
E H
Sbjct: 247 PHEPH 251
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 6e-09
Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 20/199 (10%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VLK I+ E G + I G TGSGKT+L+ + +EP+ GKI G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGE---AVREKENGLDSLVVE 1118
R Q + GT++ N+ + + V+ C L E EK+N +++ E
Sbjct: 99 RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDN---TVLGE 155
Query: 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM-ILQKTIRAEFADCTVITV 1177
G S GQR L RA+ + + + +LD +D T+ I + + A+ T I V
Sbjct: 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILV 215
Query: 1178 AHRIPTVMDCTMVLAISDG 1196
++ + +L + +G
Sbjct: 216 TSKMEHLKKADKILILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 6e-09
Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 24/218 (11%)
Query: 998 DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH 1057
D + +S T G ++G +G GK+TL+ L +P G+I++DG+D+S + +
Sbjct: 30 DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY 89
Query: 1058 DLRSRFGIIPQDPTLF-NGTVRYNL------DPLSQ-HTDQEIWEVLAKCHLGEAVREKE 1109
+ ++ Q LF + TV N+ D L + + E+L H+ E + K
Sbjct: 90 --QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP 147
Query: 1110 NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA--TDMILQKTIRA 1167
+ L S GQRQ L R+L +R ++L+LDE ++D M L+
Sbjct: 148 HQL-----------SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL 196
Query: 1168 EFADCTVITVAHRIPTVMDCTMVLAISD-GKLAEYDEP 1204
E T + V H M +AI + GK + EP
Sbjct: 197 ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEP 234
|
Length = 377 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 7e-09
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 25/219 (11%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG-----GKILVDGIDI--SKLG 1055
++GIS I+G +G GK+T I L R+ E G G + G +I ++
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82
Query: 1056 LHDLRSRFGIIPQDPTLFNGTVRYNL-------DPLSQHTDQEIWE-VLAKCHLGEAVRE 1107
++ LR + G++ Q P F ++ N+ L Q EI E L L + V++
Sbjct: 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD 142
Query: 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA 1167
K N + S GQ+Q C+ RAL + ++L++DE +++D M +++ I +
Sbjct: 143 KLN-------KSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHS 195
Query: 1168 EFADCTVITVAHRIPT---VMDCTMVLAISDGKLAEYDE 1203
++ T+ V H + V D T + + ++ + E
Sbjct: 196 LRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234
|
Length = 259 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 8e-09
Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 27/227 (11%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGG-----KILVDGIDI--SKL 1054
VLK I+ F I+G +G GK+TL+ AL R+ + G +L+D +I L
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 1055 GLHDLRSRFGIIPQDPTLFNGTVRYN-------LDPLSQHTDQEIWE-VLAKCHLGEAVR 1106
+ +LR R G++ Q P F ++ N L +Q E+ E L + L + V+
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK 138
Query: 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR 1166
+ + + G S GQ+Q C+ R L ++++DE +++D + M +++ ++
Sbjct: 139 DNLH-------KSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ 191
Query: 1167 AEFADCTVITVAHRIPTVM---DCTMVLAISDGKLAEYDEPMKLMKR 1210
+ T+ V H + D T L D L EY ++ R
Sbjct: 192 ELKQNYTIAIVTHNMQQAARASDWTGFLLTGD--LVEYGRTGEIFSR 236
|
Length = 251 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 9e-09
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ +++ SF + + P +RN+S + PG+ +AI G GSGKSTL ILG + T G +
Sbjct: 1 LEVENVSFRYPGAE-PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 688 L 688
Sbjct: 60 R 60
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 9e-09
Identities = 48/209 (22%), Positives = 96/209 (45%), Gaps = 18/209 (8%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL--VEPA-- 1040
++++ +L + D +LK ++ ++G +G GK+T I L R+ + P
Sbjct: 3 RIEVENLNTYF--DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 1041 -GGKILVDGIDI--SKLGLHDLRSRFGIIPQDPTLFNGT----VRYNLDPLSQHTDQEIW 1093
G I +DG+DI + + +LR + G++ Q P F + V Y L + + I
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 1094 EVLAKCHLGEAV-REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATAS 1152
E + + A+ E ++ LD + S GQ+Q C+ R + ++++DE ++
Sbjct: 121 ERVEESLKAAALWDEVKDKLD----KSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSA 176
Query: 1153 IDNATDMILQKTIRAEFADCTVITVAHRI 1181
+D + ++ I D T++ V H +
Sbjct: 177 LDPISTTKIEDLIHKLKEDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (138), Expect = 9e-09
Identities = 46/204 (22%), Positives = 93/204 (45%), Gaps = 24/204 (11%)
Query: 998 DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG-----GKILVDGIDI- 1051
D+ +L+G+S I+G +G GK+T + L R+ E G++ +I
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIY 77
Query: 1052 -SKLGLHDLRSRFGIIPQDPTLFNGTV----RYNLDPLSQHTDQEIWEV----LAKCHLG 1102
++ L+ LR + ++ P LF +V Y + + EI ++ L L
Sbjct: 78 ERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLW 137
Query: 1103 EAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQ 1162
+ ++ K + + + S GQ+Q C+ RAL + ++L++DE +D M ++
Sbjct: 138 DEIKHK-------IHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVE 190
Query: 1163 KTIRAEF--ADCTVITVAHRIPTV 1184
I++ ++ T++ V+H + V
Sbjct: 191 SLIQSLRLRSELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 1e-08
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+ ISL V G+ V I G GSGKSTLL + G G+I
Sbjct: 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
|
Length = 240 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-08
Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 27/193 (13%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILV-DG 1048
++ Y L+LK +S + G +I IVG G+GK+TL+ L + P G + V +
Sbjct: 326 NVSKGY-DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET 384
Query: 1049 IDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPL-SQHTDQEIWEVLAKCHL-GEAVR 1106
+ I H +D + TV L +QE+ L + GE
Sbjct: 385 VKIGYFDQH----------RDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQE 434
Query: 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR 1166
+ L S G++ L + LL+ +L+LDE T +D + L++ +
Sbjct: 435 KPVGVL-----------SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL 483
Query: 1167 AEFADCTVITVAH 1179
+F + TV+ V+H
Sbjct: 484 -DF-EGTVLLVSH 494
|
Length = 530 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 46/170 (27%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK------LG 1055
+ +S T G + I G G+GKTTL+ L L+ P G++ G I
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76
Query: 1056 LHDLRSRFGIIPQDPTLFNGTVRYNL----DPLSQHTDQEIWEVLAKCHLGEAVREKENG 1111
L L + GI L T NL IWE LA+ L G
Sbjct: 77 LLYLGHQPGI---KTEL---TALENLHFWQRFHGSGNAATIWEALAQVGLA--------G 122
Query: 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMIL 1161
L+ L V S GQ++ L R L + + +LDE ++D +L
Sbjct: 123 LEDLPV---GQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL 169
|
Length = 209 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 18/170 (10%)
Query: 992 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI 1051
+ R LV+ G+S + G G++G G+GKTT + L L P G I + G +
Sbjct: 12 NVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPV 71
Query: 1052 SKLGLHDLRSRFGIIPQ----DPTLFNGTVRYNLDPLSQH---TDQEIWEVLAKCHLGEA 1104
H R R G++PQ DP TVR NL ++ + ++ L E
Sbjct: 72 PSRARH-ARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAARALVPP--LLEF 125
Query: 1105 VREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
+ EN D+ V E S G ++ L RAL+ +LVLDE T +D
Sbjct: 126 AK-LENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 56/247 (22%), Positives = 113/247 (45%), Gaps = 37/247 (14%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PA 1040
+++ DL I Y + IS E ++G +G GK+T + ++ R+ + +
Sbjct: 22 LEVKDLSIYY--GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS 79
Query: 1041 GGKILVDGIDI--SKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHT--------DQ 1090
G+IL +G++I S + + +LR G++ Q P F ++ N+ ++ D+
Sbjct: 80 EGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDE 139
Query: 1091 EIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEAT 1150
+ E L K L + V+++ + + S GQ+Q C+ R L + +L+LDE
Sbjct: 140 IVEESLTKAALWDEVKDRLH-------SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPA 192
Query: 1151 ASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISD-------GKLAEYDE 1203
+++D ++ +++ I + ++I V H + L +SD G L EYD+
Sbjct: 193 SALDPISNAKIEELITELKEEYSIIIVTHNM------QQALRVSDRTAFFLNGDLVEYDQ 246
Query: 1204 PMKLMKR 1210
++
Sbjct: 247 TEQIFTS 253
|
Length = 268 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-08
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 19/193 (9%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL--VEPAG---GKILVDGIDISKLGLH 1057
+K ++ + G ++G +G GKTT + A+ R+ + P G+IL+DG DI +
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 1058 D--LRSRFGIIPQDP------TLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAV-REK 1108
+R R G++ Q P ++F+ V L + EV + G A+ E
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVA-GLKLAGIRDRDHLMEVAERSLRGAALWDEV 138
Query: 1109 ENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE 1168
++ L + + S GQ+Q C+ RAL IL++DE T+++D A+ ++ +
Sbjct: 139 KDRLKT----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL 194
Query: 1169 FADCTVITVAHRI 1181
T+I V H +
Sbjct: 195 KKVTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-08
Identities = 46/207 (22%), Positives = 95/207 (45%), Gaps = 14/207 (6%)
Query: 994 RYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK 1053
+ + ++L+ +S + G ++G TGSGK+TL+ +L E + G++ +
Sbjct: 667 FFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------ 720
Query: 1054 LGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLD 1113
RS +PQ + N TVR N+ + + + + L + + GL+
Sbjct: 721 ------RS-IAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLE 773
Query: 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID-NATDMILQKTIRAEFADC 1172
+ + E G N S GQ+ L RA+ + +LD+ +++D + + ++++ A
Sbjct: 774 TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGK 833
Query: 1173 TVITVAHRIPTVMDCTMVLAISDGKLA 1199
T + H++ V V+A+ DG++
Sbjct: 834 TRVLATHQVHVVPRADYVVALGDGRVE 860
|
Length = 1560 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 620 NIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE 679
++ N++ V +F + N+SLE+ G+ + I GE GSGKSTL + G
Sbjct: 5 SVRNLSIVYGGGKFAF--------HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL 56
Query: 680 VPHTQGTIL 688
+ G+IL
Sbjct: 57 EKPSSGSIL 65
|
Length = 252 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 30/194 (15%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA---GGKILVDGIDISKLGLHD 1058
+L ++ T G + ++G +G GK+TL+ + + G++ ++ + L
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA- 75
Query: 1059 LRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVRE------KENGL 1112
+ + GI+ QD LF LS Q + L G A R + +GL
Sbjct: 76 -QRQIGILFQDALLF--------PHLS--VGQNLLFALPATLKGNARRNAANAALERSGL 124
Query: 1113 DSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADC 1172
D +D + S GQR L RALL + + L+LDE + +D A +R +F
Sbjct: 125 DGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA--------LRDQFRQW 176
Query: 1173 TVITV-AHRIPTVM 1185
V A IPTV
Sbjct: 177 VFSEVRAAGIPTVQ 190
|
Length = 213 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 46/245 (18%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFR---LVEPAG 1041
K +I +L + Y + LK I+ ++G +G GK+TL+ L R L+E
Sbjct: 3 KFNIENLDLFYGENQ--ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK 60
Query: 1042 --GKILVDGIDI-SKLGLHDLRSRFGIIPQDPTLFNGT----VRYNLDPL----SQHTDQ 1090
GK+ +DG DI + + DLR + G++ Q P F + V Y L + D+
Sbjct: 61 ITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDE 120
Query: 1091 EIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEAT 1150
+ L L + V+++ L S S GQ+Q C+ R + ++++DE T
Sbjct: 121 VVERSLRGAALWDEVKDR---LKSH----AFGLSGGQQQRLCIARTIAMEPDVILMDEPT 173
Query: 1151 ASIDN-ATDMI--LQKTIRAEFADCTVITVAHRIPTVMDCTMVLA--ISD-------GKL 1198
+++D AT I L + ++ + T++ V H +M A ISD G+L
Sbjct: 174 SALDPIATHKIEELMEELKKNY---TIVIVTH--------SMQQARRISDRTAFFLMGEL 222
Query: 1199 AEYDE 1203
E+D+
Sbjct: 223 VEHDD 227
|
Length = 249 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 41/221 (18%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL---GLHD 1058
+L G+ + G I ++G +GSGK+TL+ L L + + G++ + G + ++
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 1059 LRSR--------FGIIP--------QDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLG 1102
LR++ F +IP + P L G S+ + +L + LG
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGES-------SRQSRNGAKALLEQLGLG 137
Query: 1103 EAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT-DMI- 1160
+ + L S G++Q L RA R +L DE T ++D T D I
Sbjct: 138 KRLDHLPAQL-----------SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA 186
Query: 1161 -LQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAE 1200
L ++ E T+I V H + C L + +G+L E
Sbjct: 187 DLLFSLNREHG-TTLILVTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 2e-08
Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 34/192 (17%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
K+++ DL RY VLKG+S G I I+G +GSGK+T + + L +P+ G I
Sbjct: 5 KLNVIDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI 62
Query: 1045 LVDGIDIS-------------KLGLHDLRSRFGIIPQDPTLFNG-TVRYNL--DP----- 1083
+V+G I+ K L LR+R ++ Q L++ TV N+ P
Sbjct: 63 VVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 122
Query: 1084 LSQHTDQE-IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142
LS+ +E + LAK + E + K + S GQ+Q + RAL
Sbjct: 123 LSKQEARERAVKYLAKVGIDERAQGKYP----------VHLSGGQQQRVSIARALAMEPE 172
Query: 1143 ILVLDEATASID 1154
+L+ DE T+++D
Sbjct: 173 VLLFDEPTSALD 184
|
Length = 257 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 30/171 (17%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI--------SK 1053
VL GI + G + I+G +GSGKTTL+ + L +P G I V I I K
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 1054 LGLHDLRSRFGIIPQDPTLF----------NGTVRYNLDPLSQHTDQEIWEVLAKCHLGE 1103
+ LR G + Q+ LF G V +P + T E+LAK L
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEAT-ARARELLAKVGLA- 135
Query: 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
KE + S GQ+Q + RAL R +++ DE T+++D
Sbjct: 136 ---GKETSYPRRL-------SGGQQQRVAIARALAMRPEVILFDEPTSALD 176
|
Length = 250 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 3e-08
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VLK IS E G + + G TGSGK++L+ + +EP+ GKI G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121
R PQ + GT++ N+ + + V+ C L E + +++ E G
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGI 547
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158
S GQR L RA+ + + + +LD +D T+
Sbjct: 548 TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTE 584
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I ++ + S+ + ++ + L+VR G+ +AI G GSGKSTLL I+G + G +
Sbjct: 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 688 L 688
L
Sbjct: 58 L 58
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 53/205 (25%), Positives = 101/205 (49%), Gaps = 21/205 (10%)
Query: 1018 IVGRTGSGKTTLIGALFRLVE--PA---GGKILVDGIDI--SKLGLHDLRSRFGIIPQDP 1070
I+G +G GK+T I L R+VE P+ GKIL +I + +LR+ G++ Q P
Sbjct: 55 IIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114
Query: 1071 TLFNGTVRYNLD---PLSQHTDQEIW-EVLAKCHLGEAV-REKENGLDSLVVEDGSNWSM 1125
F ++ N+ + D++ E++ K G A+ E ++ L ++ S
Sbjct: 115 NPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLH----DNAYGLSG 170
Query: 1126 GQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRI---P 1182
GQ+Q C+ R L ++++DE T+++D + + +++ ++ D ++I V H +
Sbjct: 171 GQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAA 230
Query: 1183 TVMDCTMVLAISDGKLAEYDEPMKL 1207
+ D T +G + EYD+ K+
Sbjct: 231 RISDKTAFFL--NGYVNEYDDTDKI 253
|
Length = 271 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 23/195 (11%)
Query: 997 PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL 1056
P L +S G + + G +G+GKTTL+ L+ + P+ G++ + G D+++L
Sbjct: 12 PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRG 71
Query: 1057 HD---LRSRFGIIPQDPTLF-NGTVRYNLD-PLSQHTDQEIWEVLAKCHLGEAVREK-EN 1110
LR R G++ QD L + TV N+ PL EV K ++ +
Sbjct: 72 RQLPLLRRRIGVVFQDFRLLPDRTVYENVALPL---------EVRGKK--EREIQRRVGA 120
Query: 1111 GLDSLVVEDGSN-----WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM-ILQKT 1164
L + +E ++ S G++Q + RA++ +L+ DE T ++D IL
Sbjct: 121 ALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLL 180
Query: 1165 IRAEFADCTVITVAH 1179
R TVI H
Sbjct: 181 KRLNKRGTTVIVATH 195
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 3e-08
Identities = 50/225 (22%), Positives = 103/225 (45%), Gaps = 31/225 (13%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDI--SKLG 1055
L I+ ++G +G GK+T + L R+ + G++L+DG +I +
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 1056 LHDLRSRFGIIPQDPTLFNGTVRYNL--DPL------SQHTDQEIWEVLAKCHLGEAVRE 1107
+ +LR R G++ Q P F ++ N+ P + D+ + L K L + V++
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD 139
Query: 1108 --KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI 1165
K++ L S GQ+Q C+ R + + ++++DE T+++D + + ++ +
Sbjct: 140 DLKKSAL---------KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLM 190
Query: 1166 RAEFADCTVITVAHRI---PTVMDCTMVLAISDGKLAEYDEPMKL 1207
+ T++ V H + V D T + G L E+++ K+
Sbjct: 191 VELKKEYTIVIVTHNMQQASRVSDYTAFFLM--GDLIEFNKTEKI 233
|
Length = 251 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 28/174 (16%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L+ +S T G + ++G +G GKTTL+ + V P+ G I ++G I G +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----A 74
Query: 1062 RFGIIPQDPTLFNG-TVRYN------LDPLSQHTDQEI-WEVLAKCHLGEAVREKENGLD 1113
G++ Q+ L V N L + + +EI ++LA L A
Sbjct: 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGA--------- 125
Query: 1114 SLVVEDGSNW--SMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI 1165
E W S G RQ + RAL ++L+LDE ++D T +Q+ +
Sbjct: 126 ----EHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175
|
Length = 259 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
+I ++ SF + K ++++SLE+ G++V + G GSGKSTLL + G + T G
Sbjct: 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60
Query: 687 IL 688
+L
Sbjct: 61 VL 62
|
Length = 235 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 4e-08
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
++ I L V+ G+ V I G GSGKSTLL I GTI+
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 4e-08
Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD- 1058
++ +S G +GI G G+G+T L ALF L PA G+I +DG +++ D
Sbjct: 13 KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA 72
Query: 1059 LRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWE-VLAKCHLGEAVREKENGLDSLVV 1117
+R+ +P+D G V D + E + L
Sbjct: 73 IRAGIAYVPEDR-KREGLV----------LDLSVAENIALSSLL---------------- 105
Query: 1118 EDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFAD--CTVI 1175
S G +Q L R L R R+L+LDE T +D + + IR E AD V+
Sbjct: 106 ------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIR-ELADAGKAVL 158
Query: 1176 TVAHRIPTVMD-CTMVLAISDGKL 1198
++ + ++ C +L + +G++
Sbjct: 159 LISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 29/189 (15%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
+++ DL RY VLKG+S G I I+G +GSGK+T + + L +P+ G I
Sbjct: 6 ALEVEDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63
Query: 1045 LVDGIDI----SKLG---------LHDLRSRFGIIPQDPTLFNG-TVRYNLDPLSQHTDQ 1090
V+G +I K G L LR+R G++ Q L++ TV N+ H
Sbjct: 64 RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVH--- 120
Query: 1091 EIWEVLAKCHLGEAVREKENGLDSLVVEDGSN-----WSMGQRQLFCLGRALLRRSRILV 1145
VL EA+ E L + + + ++ S GQ+Q + RAL +++
Sbjct: 121 ----VLGVSK-AEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVML 175
Query: 1146 LDEATASID 1154
DE T+++D
Sbjct: 176 FDEPTSALD 184
|
Length = 256 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 5e-08
Identities = 113/459 (24%), Positives = 194/459 (42%), Gaps = 67/459 (14%)
Query: 780 PFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPV-IFLAIRLQRYYFATAKELMRLNGT 838
PF +I A+ Y LGV +++ +L + P+ F+ ++Q+ T + L R T
Sbjct: 425 PFRIIIAM---VLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKL---TKEGLQR---T 475
Query: 839 TKSLVANHLAESIAGAM-TIRAFEEEDRFFAKNLDLIDTNASPF--FQTFAA-NEWLIQR 894
K + L + AM T++ + E+ F +K + D S F Q +A N +++
Sbjct: 476 DKRI---GLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNS 532
Query: 895 LETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVM--SIQNQCTLANYII 952
+ L TV+S F + L G TP +LS L L M ++ Q AN +
Sbjct: 533 IPVL-VTVVS---FGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNAN--V 586
Query: 953 SVERLNQYMHVPSEAPE-VVEDNRPPPNWPVVGKVDICDLQIRYRPDSPL-VLKGISCTF 1010
S++RL + + A E V+ N PP P + + I + + + L I+
Sbjct: 587 SLKRLEELL----LAEERVLLPN--PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDV 640
Query: 1011 EGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDP 1070
G + IVG TG GKT+LI A+ + P +V +R +PQ
Sbjct: 641 PVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV------------IRGTVAYVPQVS 688
Query: 1071 TLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSL-------VVEDGSNW 1123
+FN TVR N+ S + + V ++ LD L + E G N
Sbjct: 689 WIFNATVRDNILFGSPFDPERYERAI-------DVTALQHDLDLLPGGDLTEIGERGVNI 741
Query: 1124 SMGQRQLFCLGRALLRRSRILVLDEATASID-NATDMILQKTIRAEFADCTVITVAHRIP 1182
S GQ+Q + RA+ S + + D+ +++D + + K I+ E T + V +++
Sbjct: 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLH 801
Query: 1183 TVMDCTMVLAISDGKLAE---YDEPMKLMKREGSLFGQL 1218
+ ++ + +G + E Y+E G LF +L
Sbjct: 802 FLSQVDRIILVHEGMIKEEGTYEELSN----NGPLFQKL 836
|
Length = 1622 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-08
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 593 QANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLE 652
A ++ LE+P + + IS+++ SF + + KP + +++L
Sbjct: 286 AGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG--KPALSDLNLT 343
Query: 653 VRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690
++ GQ A+ G G+GKSTLL +LG + TQG I N
Sbjct: 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVN 381
|
Length = 559 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 5e-08
Identities = 46/199 (23%), Positives = 89/199 (44%), Gaps = 32/199 (16%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDI--SKLG 1055
LKGI F ++G +G GK+T + L R+ + G + + G +I
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 1056 LHDLRSRFGIIPQDPTLFNGTVRYN------LDPLSQHT--DQEIWEVLAKCHLGEAVRE 1107
+ LR + G++ Q P F ++ N L + D+ + L + + + V++
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT-----DMILQ 1162
+ E + S GQ+Q C+ R L + +++LDE T+++D + +M+L
Sbjct: 141 HLH-------ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLL- 192
Query: 1163 KTIRAEFADCTVITVAHRI 1181
+R ++ T+I V H +
Sbjct: 193 -ELRDQY---TIILVTHSM 207
|
Length = 252 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 31/224 (13%)
Query: 1018 IVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISKLGLHD--LRSRFGIIPQDP 1070
+G +G GK+T + R+ + G++ +DGID+ + + LR++ G++ Q P
Sbjct: 36 FIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP 95
Query: 1071 TLFNGTVRYN---------LDPLSQHTDQEIWEVLAKCHLGEAV--REKENGLDSLVVED 1119
F ++ N L + D+ + + L L E + R K++
Sbjct: 96 NPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAF------- 148
Query: 1120 GSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAH 1179
S GQ+Q C+ RA+ + +L++DE +++D +++ I+ + T+I V H
Sbjct: 149 --ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTH 206
Query: 1180 RIPTVMDCT-MVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222
+ + V G++ EY+ ++ K S + Y
Sbjct: 207 SMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQS---SKTKRY 247
|
Length = 251 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-08
Identities = 78/352 (22%), Positives = 152/352 (43%), Gaps = 32/352 (9%)
Query: 354 AITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNY 413
A L VA +L + ++Y + L G +V + + A++ + LS + + GE+++
Sbjct: 62 AFLLVVALVLALGTAARFYLVTWL-GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSR 120
Query: 414 VTVDAYRIGEFPFWFHQIWTTSVQLCI-ALIILFHAVGLATIAALVVIMITVLCNAPLAK 472
+T D + + + +CI LI++F + + +LV++ + ++ P+
Sbjct: 121 LTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMF--ITSPKLTSLVLLAVPLVL-LPILL 177
Query: 473 LQHKFQTKLMVAQDERLKACS----EALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSA 528
+ + +QD R+ E L ++ ++ + E ++ VE + +A
Sbjct: 178 FGRRVRKLSRESQD-RIADAGSYAGETLGAIRTVQAFGHEDAERSRFG--GAVEKAYEAA 234
Query: 529 VQLRKAYNTFLFWSSPVLVSTAT-----FGACYFLNVPLYASNVFTFVATLRLVQDPIRV 583
Q R L VLV A GA + + A + FV +V I
Sbjct: 235 RQ-RIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGT 293
Query: 584 IPDVIGVFIQANVAFSRIVNFLEA-PEL------QSMNIRQKGNIENVNHVISIKSASFS 636
+ +V G +A A R++ L+A P++ +++ + +G IE + +F+
Sbjct: 294 LSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIE-------FEQVNFA 346
Query: 637 WEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+ +P + ++L VRPG+ VA+ G G+GKSTL +L G IL
Sbjct: 347 YPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL 398
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 6e-08
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 627 VISIK--SASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
++ +K S SF + K + +S E++ G+ + I GE GSGKS L AI+G +P
Sbjct: 1 LLEVKNLSVSFPTDAGVVKA-VDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPN 59
Query: 685 GTILQNSWL 693
I+ L
Sbjct: 60 ARIVGGEIL 68
|
Length = 316 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 6e-08
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 625 NHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
V+ ++ S ++ + ++++S + G ++AI G G+GKSTLL + GE+
Sbjct: 319 KLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLS 376
Query: 685 GTI 687
GT+
Sbjct: 377 GTV 379
|
Length = 530 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 6e-08
Identities = 52/236 (22%), Positives = 100/236 (42%), Gaps = 43/236 (18%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISKLGLH 1057
L I+ + ++G +G GK+TL+ R+ + G IL +G +I G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 1058 --DLRSRFGIIPQDPTLFNGTVRYNL--------DPLSQHTDQEIWEVLAKCHLGEAVRE 1107
LR + G++ Q P F ++ N+ + + D + + L L + V++
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKD 141
Query: 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDE--------ATASIDNATDM 1159
+ + + + S GQ+Q C+ R L ++++DE ATA I++ +
Sbjct: 142 RLH-------DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194
Query: 1160 ILQKTIRAEFADCTVITVAHRIPT---VMDCTMVLAISDGKLAEYDEPMKLMKREG 1212
+ + + TVI V H + V D T + + GKL E+D+ ++ +
Sbjct: 195 LKK--------EYTVIIVTHNMQQAARVSDYTGFMYL--GKLIEFDKTTQIFENPH 240
|
Length = 253 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 6e-08
Identities = 50/166 (30%), Positives = 70/166 (42%), Gaps = 31/166 (18%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL--GLHDL 1059
LK IS + + G + ++G +G GKTTL+ + L G I G DI++L D
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD- 77
Query: 1060 RSRFGIIPQDPTLF-NGTVR----YNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDS 1114
+GI+ Q LF N TV Y L + V E+ L
Sbjct: 78 ---YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAE--------------VAERVAELLD 120
Query: 1115 LVVEDGS------NWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
LV GS S GQ+Q L RAL +L+LDE +++D
Sbjct: 121 LVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALD 166
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 7e-08
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+ + ++SL +RPG+ VAI G G+GKSTLL A+ GE+ G +
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60
|
Length = 258 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 7e-08
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 973 DNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGA 1032
P + V +D+ + Y D +V G+S T G G++G G+GK+T+
Sbjct: 30 KASIPGSMSTVA-IDLAGVSKSYG-DKAVV-NGLSFTVASGECFGLLGPNGAGKSTIARM 86
Query: 1033 LFRLVEPAGGKILVDGIDI-SKLGLHDLRSRFGIIPQDPTL-FNGTVRYNLDPLSQH--- 1087
+ + P GKI V G+ + ++ L R+R G++PQ L TVR NL ++
Sbjct: 87 ILGMTSPDAGKITVLGVPVPARARL--ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM 144
Query: 1088 TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLD 1147
+ +EI V+ L E R E+ D+ V S+ S G ++ L RAL+ ++L+LD
Sbjct: 145 STREIEAVIPS--LLEFAR-LESKADARV----SDLSGGMKRRLTLARALINDPQLLILD 197
Query: 1148 EATASID 1154
E T +D
Sbjct: 198 EPTTGLD 204
|
Length = 340 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 7e-08
Identities = 57/213 (26%), Positives = 87/213 (40%), Gaps = 32/213 (15%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
LKGIS T E G +G +G G+GKTT + L L++P G++ V G+ K
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR-KKFLR 94
Query: 1062 RFGII------------PQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREK 1108
R G++ D + Y+L P + E+ E+L L
Sbjct: 95 RIGVVFGQKTQLWWDLPVIDSFYLLAAI-YDLPPARFKKRLDELSELLDLEEL------- 146
Query: 1109 ENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE 1168
LD+ V S+GQR + ALL IL LDE T +D ++ ++
Sbjct: 147 ---LDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY 199
Query: 1169 FAD--CTVITVAHRIPTVMD-CTMVLAISDGKL 1198
+ TV+ +H + + VL I G+L
Sbjct: 200 NRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 8e-08
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 28/173 (16%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL-----VEPAGGKILVDGIDISKLGL 1056
+KGIS E G + +VG +GSGK+ ++ L G IL DG D+
Sbjct: 25 AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84
Query: 1057 HDLR----SRFGIIPQDP-TLFNGTVRYN---LDPLSQHTD-------QEIWEVLAKCHL 1101
LR ++ G+I Q+P T N + L H E+L +
Sbjct: 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGI 144
Query: 1102 GEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
E E LD+ E S GQRQ + AL +L+ DE T ++D
Sbjct: 145 ----PEPEKRLDAYPHE----LSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 8e-08
Identities = 62/260 (23%), Positives = 110/260 (42%), Gaps = 36/260 (13%)
Query: 961 MHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVG 1020
+ V E V P VV +V+ DL ++ R +K +S G +GI G
Sbjct: 236 LMVGREVVLRVVKPPSTPG-EVVLEVE--DLSVKDRRGVT-AVKDVSFEVRAGEIVGIAG 291
Query: 1021 RTGSGKTTLIGALFRLVEPAGGKILVDGIDIS---------KLGLH---DLRSRFGIIPQ 1068
G+G++ L+ A+ L +PA G+IL++G D+ +LGL + R G++
Sbjct: 292 VAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLD 351
Query: 1069 DPTLFNGTV-RYNLDPLSQH--TDQEIWEVLAKCHLGEAVRE---KENGLDSLVVEDGSN 1122
N + R++ P S+ D+ A+ E + E + D+ +
Sbjct: 352 LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR----ELIEEFDVRAPSPDAPA----RS 403
Query: 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASID-NATDMILQKTIRAEFADCTVITVA--- 1178
S G +Q L R L RR +L+ + T +D A + I ++ + A V+ ++
Sbjct: 404 LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL 463
Query: 1179 HRIPTVMDCTMVLAISDGKL 1198
I + D V I +G++
Sbjct: 464 DEILELSDRIAV--IYEGRI 481
|
Length = 501 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 47/221 (21%), Positives = 80/221 (36%), Gaps = 37/221 (16%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH-DLR 1060
+L +S G IVG G+GKTTL+ L P+ G + + G K +LR
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 1061 SRFGI--------IPQDPTLFN----------GTVRYNLDPLSQHTDQEIWEVLAKCHLG 1102
R G+ T+ + G + +L Q + E+L
Sbjct: 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELL------ 159
Query: 1103 EAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQ 1162
G L + S G+++ + RAL++ +L+LDE +D L
Sbjct: 160 --------GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLL 211
Query: 1163 KTIRAEFADC---TVITVAHRIPTVMDC-TMVLAISDGKLA 1199
+ A ++ V H + C T L + +G++
Sbjct: 212 NRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 8e-08
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
R++S ++ PG+ + I GE GSGK+TLL I G + GT+
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV 63
|
Length = 258 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 8e-08
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 28/191 (14%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062
LKG++ T + G I ++G +G GK+TL+ + L +P G ++++G I++ G +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57
Query: 1063 FGIIPQDPTLFNG-TVRYN--------LDPLSQHTDQEIW-EVLAKCHLGEAVREKENGL 1112
++ Q+ +L TVR N L LS+ + I E +A L EA ++ L
Sbjct: 58 --VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQL 115
Query: 1113 DSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR--AEFA 1170
S G +Q + RAL R ++L+LDE ++D T LQ+ + E
Sbjct: 116 -----------SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH 164
Query: 1171 DCTVITVAHRI 1181
TV+ V H +
Sbjct: 165 RVTVLMVTHDV 175
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 9e-08
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 621 IENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV 680
+ N++ + F E + ++S ++R G+ + + GE GSGKSTL + G +
Sbjct: 283 VRNLSKRYGSRKGLFVRE-RGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL 341
Query: 681 PHTQGTIL 688
P + G+I+
Sbjct: 342 PPSSGSII 349
|
Length = 539 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 1e-07
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 620 NIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE 679
++N++ S + ++S ++ G+ + + GE GSGKSTL AILG
Sbjct: 3 EVKNLSVSFPTGG--------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL 54
Query: 680 VPHTQGTIL 688
+ T G+I+
Sbjct: 55 LKPTSGSII 63
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 29/238 (12%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI--SKLGLHDL 1059
VL I + G + I+G +GSGK+TL+ + +L E G ++VDG+ + K+ +
Sbjct: 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75
Query: 1060 RSRFGIIPQDPTLF-NGTVRYNL--DPL------SQHTDQEIWEVLAKCHLGEAVREKEN 1110
R G++ Q LF + T N+ PL + +++ E+LAK L E +
Sbjct: 76 RQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPS 135
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA 1170
L S GQ+Q + RAL + ++++ DE T+++D + K ++ + A
Sbjct: 136 EL-----------SGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQ-DLA 183
Query: 1171 D--CTVITVAHRIPTVMDC-TMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWSH 1225
+ T++ V H I + ++ I G++AE +P L+K S Q ++E+ H
Sbjct: 184 EEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPS---QRLQEFLQH 238
|
Length = 240 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 22/227 (9%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG-----GKILVDGIDISKLGLH 1057
LK +S ++G +G GK+T I L R+ + GK+ ++G DI + +
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 1058 --DLRSRFGIIPQDPTLFNGTVRYNL--DPLSQHTDQEIWEVLAKCHLGEAV--REKENG 1111
+LR G++ Q P F ++ N+ P +++ + + + L A E +
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDR 147
Query: 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFAD 1171
L S + + S GQ+Q C+ R L + +I++ DE T+++D + ++ I D
Sbjct: 148 LKSPAL----SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKD 203
Query: 1172 CTVITVAHRI---PTVMDCTMVLAISDGKLAEYDEPMKLMK--REGS 1213
T++ V H + + D T + G+L E+ + ++ RE S
Sbjct: 204 YTIVIVTHNMQQAARISDYTGFFLM--GELIEFGQTRQIFHNPREKS 248
|
Length = 258 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-07
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 36/186 (19%)
Query: 990 DLQIRYRPDSP---LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILV 1046
++ RY+ +P L ++ + G + I+G TGSGK+TL+ L L++P G + +
Sbjct: 7 KVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI 66
Query: 1047 DGIDIS----KLGLHDLRSRFGIIPQDP--TLFNGTVRYNL--DPLSQHTDQEIWEVLAK 1098
I+ L LR + GI+ Q P LF TV ++ P++ +E + A+
Sbjct: 67 GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAR 126
Query: 1099 CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI----------LVLDE 1148
E + + GL ++ R F L +RR I LVLDE
Sbjct: 127 ----EMI--ELVGLPEELLA---------RSPFELSGGQMRRVAIAGVLAMEPEVLVLDE 171
Query: 1149 ATASID 1154
TA +D
Sbjct: 172 PTAGLD 177
|
Length = 290 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 44/180 (24%), Positives = 70/180 (38%), Gaps = 31/180 (17%)
Query: 1009 TFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS-KLGLHDLRSRFGIIP 1067
+ IGI+G G GKTT I L +++P G I ++ +S K P
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYK-------------P 67
Query: 1068 QDPTL-FNGTVRYNL-DPLSQHTDQEIW--EVLAKCHLGEAVREKENGLDSLVVEDGSNW 1123
Q + GTVR L + E+ K ++ ++ +
Sbjct: 68 QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIA-----------KPLQIEQILDREVPEL 116
Query: 1124 SMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR--AEFADCTVITVAHRI 1181
S G+ Q + L + + I +LDE +A +D ++ K IR AE + T V H I
Sbjct: 117 SGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI 176
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 45/242 (18%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG------------- 1048
VL G++ + G K+ ++G +GSGK+T++ L L G+I V+G
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 1049 IDISKLGLHDLRSRFGIIPQDPTLF-NGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVRE 1107
+ + L +R++ G++ Q LF + TV N+ LG A E
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV------------LGMARAE 122
Query: 1108 KEN---------GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158
E GL + S GQ+Q + RAL R ++++ DE T+++D
Sbjct: 123 AEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 1159 MILQKTIR--AEFADCTVITVAHRIPTVMDCT-MVLAISDGKLAEYDEPMKLMKREGSLF 1215
+ IR A D T++ V H + + V G++ E +P +F
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKP-------DEIF 235
Query: 1216 GQ 1217
Q
Sbjct: 236 RQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 16/220 (7%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
+L +S TF G G++G GSGK+TL+ L R P+ G+IL+D +
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 1062 RFGIIPQD-PTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKEN------GLDS 1114
+ +PQ P TVR L + ++ W A G A REK GL
Sbjct: 86 KVAYLPQQLPAAEGMTVR-ELVAIGRYP----WHG-ALGRFGAADREKVEEAISLVGLKP 139
Query: 1115 LVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR--AEFADC 1172
L + S G+RQ + + + SR L+LDE T+++D A + + + ++
Sbjct: 140 LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGL 199
Query: 1173 TVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211
TVI V H I C ++A+ G++ P +LM+ E
Sbjct: 200 TVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
Length = 265 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 35/240 (14%)
Query: 987 DICDLQIRYR-PDSPLV-LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG--- 1041
D+ DL++ + PD + + ++ + G +GIVG +GSGK+ AL L+ G
Sbjct: 14 DVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIG 73
Query: 1042 GKILVDGIDISKL---GLHDLRS-RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLA 1097
G +G +I L L+ LR+ + +I QDP +L+P + +Q + EVL
Sbjct: 74 GSATFNGREILNLPEKELNKLRAEQISMIFQDPMT-------SLNPYMRVGEQ-LMEVL- 124
Query: 1098 KCHLG----EAVREKENGLDSLVVEDGSN--------WSMGQRQLFCLGRALLRRSRILV 1145
H G EA E LD++ + + +S G RQ + ALL R ++L+
Sbjct: 125 MLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLI 184
Query: 1146 LDEATASID---NATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEY 1201
DE T ++D A M L ++ EF + +I + H + V C VL + G+ EY
Sbjct: 185 ADEPTTALDVTVQAQIMTLLNELKREF-NTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243
|
Length = 330 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I K+ SF + P ++ +SL + PG+ VA+ G G GKST+++ + T G I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 688 LQNSWLAANVENPNVSTLRLIVVYLLIGFVS---TLFLMS 724
L + ++ + N+ LR IG VS LF +
Sbjct: 61 LLDG---VDIRDLNLRWLR-----SQIGLVSQEPVLFDGT 92
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 2e-07
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 617 QKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI 676
+++ + SF++ + P ++ +SL+++ G+KVA+ G G GKSTLL +
Sbjct: 328 TTSTAAADQVSLTLNNVSFTYPDQPQ-PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL 386
Query: 677 LGEVPHTQGTILQN 690
QG IL N
Sbjct: 387 TRAWDPQQGEILLN 400
|
Length = 574 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 2e-07
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVENPNVSTLR 706
++SL + G+ V I G G+GKSTLL + G + + G IL ++ ++++L
Sbjct: 16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL--------LDGKDLASLS 67
Query: 707 LIVVYLLIGFVST 719
+ I +V
Sbjct: 68 PKELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-07
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
R +SLEV G+ VA+ G G+GK+TLL I+G V G I+
Sbjct: 20 RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII 61
|
Length = 237 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 628 ISIKSASFSWEESSSKPT-MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
+ +++ S ++ T + +ISL V G+ VA+ G G GKSTLL I G T G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 687 ILQN 690
+L +
Sbjct: 61 VLVD 64
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 53/175 (30%), Positives = 78/175 (44%), Gaps = 26/175 (14%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL---GLHD 1058
VL +S + G + IVG +GSGK+TL+ L L P G ++ +G +SKL +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1059 LRSR-FGIIPQDPTL---FNGTVRYNLDPL------SQHTDQEIWEVLAKCHLGEAVREK 1108
LR++ G I Q L F + PL + E+LA AV
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAM-PLLIGKKKPAEINSRALEMLA------AV--- 133
Query: 1109 ENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT-DMILQ 1162
GL+ S S G+RQ + RAL+ R+++ DE T ++D D I Q
Sbjct: 134 --GLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186
|
Length = 233 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 56/232 (24%), Positives = 111/232 (47%), Gaps = 17/232 (7%)
Query: 986 VDICDLQIRYRPDSPL-VLKGISCTFEGGHKIGIVGRTGSGKTT---LIGALFRLVEPAG 1041
+++ +L +Y +S + L G+S + G + I+G+ GSGK+T LI LF E
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE--- 61
Query: 1042 GKILVDGIDISKLGLHDLRSRFGIIPQDP--TLFNGTVRYNLDPLSQHTDQEIWEVLAKC 1099
GK+ +DG ++ + +LR + G++ Q+P TV ++ ++ E++ +
Sbjct: 62 GKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR- 120
Query: 1100 HLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM 1159
+ EA+ N LD + + S GQ+Q + + R I++LDE+T+ +D
Sbjct: 121 -VDEALLAV-NMLD-FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ 177
Query: 1160 ILQKTIRAEFAD---CTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLM 1208
+ + I E + TV+++ H + +L + G++ + P +L
Sbjct: 178 EIMRVIH-EIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 57/208 (27%), Positives = 82/208 (39%), Gaps = 27/208 (12%)
Query: 1013 GHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQD--- 1069
G +G++G G+GKTTL+ A+ L+ PA G + V G K H G +PQ
Sbjct: 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRH-----IGYVPQRHEF 60
Query: 1070 ----PTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVRE--KENGLDSLVVEDGSNW 1123
P TV +S T W AVR+ + GL L
Sbjct: 61 AWDFPISVAHTV------MSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGEL 114
Query: 1124 SMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFAD-CTVITVAHRIP 1182
S GQRQ + RAL R +L+LDE +D T +L + ++ H +
Sbjct: 115 SGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLA 174
Query: 1183 TVMD-CTMVL-----AISDGKLAEYDEP 1204
M C V+ I+DG + +P
Sbjct: 175 QAMATCDRVVLLNGRVIADGTPQQLQDP 202
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 51/214 (23%), Positives = 88/214 (41%), Gaps = 49/214 (22%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILV----DGIDISKLGLH 1057
VLK +S T G + + G +G+GK+TL+ +L+ P G+ILV +D+++
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 1058 D---LR-------SRF-GIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLG---- 1102
+ +R S+F +IP+ L EV+A+ L
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSAL---------------------EVVAEPLLERGVP 121
Query: 1103 -EAVREKENGLDSLVVEDGSNWSM-------GQRQLFCLGRALLRRSRILVLDEATASID 1154
EA R + L + + W + G++Q + R + IL+LDE TAS+D
Sbjct: 122 REAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD 181
Query: 1155 NATDMILQKTIR-AEFADCTVITVAHRIPTVMDC 1187
A ++ + I A+ +I + H
Sbjct: 182 AANRQVVVELIAEAKARGAALIGIFHDEEVRELV 215
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 26/167 (15%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-PAGGKILVDGIDI---SKLGLHD 1058
L G+S T E G + +VG +G GK+TL L ++E P GG++ G D+
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTL-ARLLTMIETPTGGELYYQGQDLLKADPEAQKL 89
Query: 1059 LRSRFGIIPQDP--TLFN--GTVRYNL-DPLSQHTDQEIWEVLAKCHLGEAVRE--KENG 1111
LR + I+ Q+P +L N V L +PL +T L+ E + G
Sbjct: 90 LRQKIQIVFQNPYGSL-NPRKKVGQILEEPLLINTS------LSAAERREKALAMMAKVG 142
Query: 1112 LDSLVVEDGSNW----SMGQRQLFCLGRALLRRSRILVLDEATASID 1154
L E + S GQRQ + RAL+ ++V DE +++D
Sbjct: 143 LRP---EHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ ++ S + + P + +SL++ PG++VAI G GSGKSTLLA + G + QG +
Sbjct: 335 LELRDLSAGYPGAP--PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEV 392
Query: 688 LQNSWLAANVENPNVSTLRLIVVYL 712
+ ++++ +R V
Sbjct: 393 TLDGVPVSSLD---QDEVRRRVSVC 414
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 622 ENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP 681
+ +I ++ + S+ + + + + L+V G+ +AI G GSGKSTLL ILG +
Sbjct: 3 ASPEPLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR 59
Query: 682 HTQGTIL 688
+G IL
Sbjct: 60 PDKGEIL 66
|
Length = 263 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 3e-07
Identities = 38/151 (25%), Positives = 57/151 (37%), Gaps = 17/151 (11%)
Query: 1016 IGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD-----------LRSRFG 1064
+GI G G+G+T L ALF + G+IL+DG + D R G
Sbjct: 288 LGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEG 347
Query: 1065 IIPQDPTLFNGTVRYNLDPLSQHTD-QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNW 1123
++ N T+ +L S+ E +R K + +
Sbjct: 348 LVLDMSIAENITL-ASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTL 402
Query: 1124 SMGQRQLFCLGRALLRRSRILVLDEATASID 1154
S G +Q L R L ++L+LDE T ID
Sbjct: 403 SGGNQQKVVLARWLATDPKVLILDEPTRGID 433
|
Length = 500 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 626 HVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
+I++++ S ++ +P + N+SL + PG+++ + G G+GKSTLL + GE+ G
Sbjct: 2 SMITLENLSLAY---GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSG 58
Query: 686 TI 687
+
Sbjct: 59 EV 60
|
Length = 530 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 3e-07
Identities = 51/215 (23%), Positives = 81/215 (37%), Gaps = 74/215 (34%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
+++ +L Y L+LK IS T G +IG+VGR G+GK+TL+ + +EP G +
Sbjct: 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 1046 VDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAV 1105
+ G Q LS GE +
Sbjct: 59 WGS-----------TVKIGYFEQ---------------LSG---------------GEKM 77
Query: 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI 1165
R L + LL +L+LDE T +D + L++ +
Sbjct: 78 R------------------------LALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL 113
Query: 1166 RAEFADCTVITVAH-R--IPTVMDCTMVLAISDGK 1197
+ E+ TVI V+H R + V T ++ + DGK
Sbjct: 114 K-EY-PGTVILVSHDRYFLDQV--ATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 54/221 (24%), Positives = 104/221 (47%), Gaps = 27/221 (12%)
Query: 1018 IVGRTGSGKTTLIGALFR---LVEPA--GGKILVDGIDISKLGLHD--LRSRFGIIPQDP 1070
++G +G GK+T + + R L++ A G++ G ++ + LR R G++ Q P
Sbjct: 70 MIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKP 129
Query: 1071 TLFNGTVRYN------LDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124
F ++ N + D+ + E L + L + V+++ LDS G + S
Sbjct: 130 NPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ---LDS----SGLDLS 182
Query: 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRI--- 1181
GQ+Q C+ RA+ ++++DE +++D ++ I + TV+ V H +
Sbjct: 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQA 242
Query: 1182 PTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222
+ D T V ++ G+L E+D+ K+ + S Q V +Y
Sbjct: 243 ARISDKTAVF-LTGGELVEFDDTDKIFENPES---QRVEDY 279
|
Length = 285 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 55/236 (23%), Positives = 105/236 (44%), Gaps = 30/236 (12%)
Query: 992 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI 1051
+ + +VL +S G I+G G+GK+TL+ + RL++ G+I +DG+++
Sbjct: 6 NVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLEL 65
Query: 1052 SKLGLHDLRSRFGIIPQDPTL-FNGTVR----YNLDPLSQ-HTDQEIWEVLAKCHLGEAV 1105
+ +L + I+ Q+ + TVR + P SQ +E + EA+
Sbjct: 66 TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRR-----IINEAI 120
Query: 1106 RE------KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM 1159
+ LD L S GQRQ + L + + ++LDE ++D +
Sbjct: 121 EYLHLEDLSDRYLDEL--------SGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSV 172
Query: 1160 ILQKTIR--AEFADCTVITVAHRIPTVMDC--TMVLAISDGKLAEYDEPMKLMKRE 1211
+ K +R A+ T++ V H I C ++A+ +GK+ + P ++++ E
Sbjct: 173 QIMKILRRLADELGKTIVVVLHDI-NFASCYSDHIVALKNGKVVKQGSPDEIIQPE 227
|
Length = 252 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 50/255 (19%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL--VEPAG- 1041
++D+ DL I Y S ++ ++ E +G +G GK+T++ L R+ V P
Sbjct: 4 RIDVKDLNIYY--GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61
Query: 1042 --GKILVDGIDISKLGLH--DLRSRFGIIPQDPTLF-NGTVRYNLDPLSQHTDQEIWEVL 1096
G++L+DG D+ G+ +R G++ Q P F ++R N V+
Sbjct: 62 VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDN--------------VV 107
Query: 1097 AKCHLGEAVREKENGLDSLV------------VED-----GSNWSMGQRQLFCLGRALLR 1139
A L +K+ LD LV V+D G S GQ+Q C+ RA+
Sbjct: 108 AGLKLNGVRNKKD--LDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV 165
Query: 1140 RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRI---PTVMDCTMVLAIS-- 1194
+L++DE +++D + + ++ I D T++ V H + V D T +
Sbjct: 166 EPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEAT 225
Query: 1195 --DGKLAEYDEPMKL 1207
G+L E D+ K+
Sbjct: 226 GKPGRLVEIDDTEKI 240
|
Length = 258 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
R++S ++ PG+ + I GE GSGK+TLL A+ + G +
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
|
Length = 258 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-07
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 597 AFSRIVNFL-EAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRP 655
A+SRI L EAP ++ + + + + F++ ++ P + N++ ++P
Sbjct: 286 AYSRIRAMLAEAPVVKDGSE----PVPEGRGELDVNIRQFTYPQTD-HPALENVNFTLKP 340
Query: 656 GQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
GQ + ICG GSGKSTLL+ I ++G I
Sbjct: 341 GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIR 373
|
Length = 569 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 4e-07
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+SL VR G+ A+ GE G+GKSTL+ + G G IL
Sbjct: 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 5e-07
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLL 673
I ++ +F+++ +P ++++S + G+KVAI G GSGKST+L
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTIL 44
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 599 SRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQK 658
S +E PE + R IE +I +K+ S K + ++S +V PG+
Sbjct: 5 SESSRGVELPEPKEPKKRHP--IEINEPLIELKNVSVRRNG---KKILGDLSWQVNPGEH 59
Query: 659 VAICGEVGSGKSTLLAAILGEVPHTQGTI 687
AI G G+GK+TLL+ + GE P + G +
Sbjct: 60 WAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
|
Length = 257 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 18/190 (9%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL--VEP---AGGKILVDGIDI--SKLG 1055
L +S F ++G +GSGK+TL+ ++ R+ + P G I+ +G +I +
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 1056 LHDLRSRFGIIPQDPTLFNGT----VRYNLDPLSQHTDQEIWEVLAKCHLGEAVRE--KE 1109
DLR G++ Q P F + V Y L Q + E + K G ++ + K+
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD 140
Query: 1110 NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF 1169
DS + G GQ+Q C+ R L +I++LDE T+++D + +++T+
Sbjct: 141 RLHDSALGLSG-----GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK 195
Query: 1170 ADCTVITVAH 1179
D T++ V
Sbjct: 196 DDYTMLLVTR 205
|
Length = 252 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 5e-07
Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 12/204 (5%)
Query: 955 ERLNQYMHVPSEAPEVVEDN---RPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFE 1011
E L + M P E PE + D+ R P V V + +L + P + ++ TF
Sbjct: 898 EPLTEEMEDP-EHPEGINDSFFERELPGL--VPGVCVKNLVKIFEPSGRPAVDRLNITFY 954
Query: 1012 GGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPT 1071
+G G+GKTT + L L+ P G +LV G DI + L +R G+ PQ
Sbjct: 955 ENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGMCPQHNI 1013
Query: 1072 LFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130
LF+ TV ++ +Q + WE A+ + EA+ E + GL E+ + S G ++
Sbjct: 1014 LFHHLTVAEHILFYAQLKGRS-WEE-AQLEM-EAMLE-DTGLHHKRNEEAQDLSGGMQRK 1069
Query: 1131 FCLGRALLRRSRILVLDEATASID 1154
+ A + ++++VLDE T+ +D
Sbjct: 1070 LSVAIAFVGDAKVVVLDEPTSGVD 1093
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 7e-07
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 639 ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG----EVPHTQGTIL 688
+ P +R++S EV PG+ + I GE GSGKSTL A++G T G ++
Sbjct: 18 DGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI 71
|
Length = 539 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 7e-07
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGAL--FRLVEPAGGKILVDGIDISKLGLHDL 1059
+LKG++ T + G ++G GSGK+TL + E G+IL G DI+ L +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE- 73
Query: 1060 RSRFGI 1065
R+R GI
Sbjct: 74 RARLGI 79
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 7e-07
Identities = 63/254 (24%), Positives = 97/254 (38%), Gaps = 72/254 (28%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD--------------- 1047
L IS G ++G G+GK+TL+ L +P G IL+D
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 1048 GIDISKLGLH--------------DLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIW 1093
G+ I LH L + GI+ + L N R L+
Sbjct: 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIV--NRRLLNYEAREQLE----------- 126
Query: 1094 EVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI 1153
HLG + + + L L S+GQRQ+ + +AL R +R++ DE T+S+
Sbjct: 127 ------HLGVDI-DPDTPLKYL--------SIGQRQMVEIAKALARNARVIAFDEPTSSL 171
Query: 1154 DNATDMILQKTIRAEFADCTVIT-VAHRIPTVMD-----CTMVLAISDGKLAEYDEPMKL 1207
L + IR A+ VI V+HR M+ C + DG+ + M
Sbjct: 172 SAREIEQLFRVIRELRAEGRVILYVSHR----MEEIFALCDAITVFKDGRYVATFDDMAQ 227
Query: 1208 MKREGSLFGQLVRE 1221
+ R+ QLV+
Sbjct: 228 VDRD-----QLVQA 236
|
Length = 501 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 8e-07
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 626 HVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
++ +++ SF + KP + ++S + G+ I G GSGKSTLL + G + G
Sbjct: 1 MMLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG 57
Query: 686 TILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLS---SVVLGIRSSKSLFS 742
+L ++ ++++L + + +V L+ V+LG LF
Sbjct: 58 EVL--------LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFG 109
Query: 743 QL 744
+
Sbjct: 110 RP 111
|
Length = 258 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 8e-07
Identities = 58/226 (25%), Positives = 97/226 (42%), Gaps = 29/226 (12%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD--- 1058
L IS TFE I+G +GSGK+TL+ L++ G I V I I +
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 1059 -------------LRSRFGIIPQDP--TLFNGTVRYNL--DPLSQHTDQEIWEVLAKCHL 1101
LR R ++ Q P LF T+ ++ P++ + + LAK +L
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYL 160
Query: 1102 GEAVREKENGLDSLVVEDGS-NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD-M 1159
+ GLD +E S GQ++ + L + IL+ DE TA +D +
Sbjct: 161 ------NKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE 214
Query: 1160 ILQKTIRAEFADCTVITVAHRIPTVMDCT-MVLAISDGKLAEYDEP 1204
++Q + A+ + TV + H + V++ V+ + GK+ + P
Sbjct: 215 MMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTP 260
|
Length = 320 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 9e-07
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 640 SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+ K ++++SL + PG+ VA+ G G+GKSTLL + G V T G++L
Sbjct: 11 PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-06
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
K + +S EV PG+ + G G+GK+TLL + G + T G IL
Sbjct: 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
|
Length = 293 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 591 FIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNIS 650
F A A+ R+ L + + + +S+++ + KPT+R IS
Sbjct: 284 FSGARQAYKRLNELLANYPSRDPAMP----LPEPEGHLSVENVTIVPPGGK-KPTLRGIS 338
Query: 651 LEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
++ G+ +AI G GSGKSTL I+G P T G++
Sbjct: 339 FSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV 375
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 636 SWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTILQN 690
S S K ++N+S + +PG+ AI G G+GKSTLL A+ G G +L N
Sbjct: 15 SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLIN 71
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 1e-06
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+SL VRPG+ A+ GE G+GKSTL+ + G P G IL
Sbjct: 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL 66
|
Length = 500 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 1e-06
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ + + FSW S T+ NI++ + GQ I G+VG GKS+LL AILGE+ +G +
Sbjct: 1 VQVTNGYFSW--GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 688 LQNS 691
++
Sbjct: 59 HWSN 62
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 616 RQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAA 675
+ K + H + FS P ++NI+L++ G+ +AI G GSGK++LL
Sbjct: 23 KAKQENNDRKHSSDDNNLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLML 82
Query: 676 ILGEVPHTQGTI 687
ILGE+ ++G I
Sbjct: 83 ILGELEPSEGKI 94
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (123), Expect = 1e-06
Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 1019 VGRTGSGKTTLI---GALFRLVEPAG--GKILVDGIDI--SKLGLHDLRSRFGIIPQDPT 1071
+G +G GK+T + L L+E G+I G + K+ +LR+R G++ Q PT
Sbjct: 114 IGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173
Query: 1072 LFNGTVRYNL--DPLSQH-TDQEIWEVLAKCHLGEAV--REKENGLDSLVVEDGSNWSMG 1126
F ++ N+ P + D++I E + + L A E ++ LD + G+ S G
Sbjct: 174 PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLD----KAGNALSGG 229
Query: 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRI 1181
Q+Q C+ RA+ +L++DE T+++D +++ I ++I V H +
Sbjct: 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSM 284
|
Length = 329 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 1e-06
Identities = 31/181 (17%), Positives = 50/181 (27%), Gaps = 58/181 (32%)
Query: 1013 GHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTL 1072
G I IVG GSGKTTL AL R + P GG ++ + + D + + +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG 61
Query: 1073 FNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132
+ R
Sbjct: 62 SGE-------------------------------------------------LRLRLAL- 71
Query: 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIR-------AEFADCTVITVAHRIPTVM 1185
A + +L+LDE T+ +D + +L + TVI + +
Sbjct: 72 -ALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLG 130
Query: 1186 D 1186
Sbjct: 131 P 131
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQG 685
I +K+ S ++ ++ +SL + G+ VAI G GSGKSTLL + G + P T G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-TSG 59
Query: 686 TI 687
+
Sbjct: 60 EV 61
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 621 IENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV 680
I+N + +I +++ SFS+ S ++N+S E+ G+ VAI G GSGKST+ + G +
Sbjct: 1 IKNKSVMIKVENVSFSYPNSE-NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL 59
Query: 681 PHTQGTI 687
G I
Sbjct: 60 KPQSGEI 66
|
Length = 271 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 623 NVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH 682
+I ++ SF + +++ ++++S V G+ VAI G GSGKSTL + G +
Sbjct: 1 MKEEIIRVEHISFRYPDAA-TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP 59
Query: 683 TQGTI 687
GTI
Sbjct: 60 EAGTI 64
|
Length = 279 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+K + + + +++IS E+ G++V I G G+GKSTLL I G T G +
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
|
Length = 249 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 2e-06
Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 24/180 (13%)
Query: 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI-SKLGLHDL 1059
+V+ +S T G G++G G+GK+T+ L ++ P GKI V G + S+ L
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARL--A 75
Query: 1060 RSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLV--- 1116
R G++PQ F+ NLDP + T +E V + + G + RE E + SL+
Sbjct: 76 RVAIGVVPQ----FD-----NLDP--EFTVRENLLVFGR-YFGMSTREIEAVIPSLLEFA 123
Query: 1117 -VEDGSN-----WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA 1170
+E ++ S G ++ L RAL+ ++L+LDE T +D ++ + +R+ A
Sbjct: 124 RLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA 183
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 57/225 (25%), Positives = 93/225 (41%), Gaps = 31/225 (13%)
Query: 1004 KGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063
+ IS G +G +G G+GK+T + L L+ P GK+ V+G D + LRS
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIG 100
Query: 1064 GIIPQDPTLF-----NGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLV-V 1117
++ Q L+ ++ + I+E+ E+ + L ++ +
Sbjct: 101 LVMGQKLQLWWDLPALDSLEVL---------KLIYEIPDD-----EFAERLDFLTEILDL 146
Query: 1118 EDGSNW-----SMGQRQLFCLGRALLRRSRILVLDEATASID-NATDMILQ--KTIRAEF 1169
E W S+GQR L ALL ++L LDE T +D NA I + K E
Sbjct: 147 EGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206
Query: 1170 ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGS 1213
TV+ H + C VL I G+L +D + ++ +
Sbjct: 207 -QATVLLTTHIFDDIATLCDRVLLIDQGQLV-FDGTLAQLQEQFG 249
|
Length = 325 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 61/233 (26%), Positives = 98/233 (42%), Gaps = 54/233 (23%)
Query: 994 RYRPDSPLVLKGISCTFEG-------------GHKIGIVGRTGSGKTTLIGALFRLVEPA 1040
R +PL+L +S + G + +VGR+G GK+TL+ L L P+
Sbjct: 6 RLNQGTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS 65
Query: 1041 GGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWE-VLAKC 1099
G++L L + R ++ QD L P W+ V+
Sbjct: 66 AGELLA-----GTAPLAEAREDTRLMFQDARLL---------P---------WKKVIDNV 102
Query: 1100 HLG------EAVREKENGLDSLVVEDGSN-W----SMGQRQLFCLGRALLRRSRILVLDE 1148
LG +A + L ++ + D +N W S GQ+Q L RAL+ R +L+LDE
Sbjct: 103 GLGLKGQWRDAALQ---ALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDE 159
Query: 1149 ATASIDNATDMILQKTIRAEFAD--CTVITVAHRIP-TVMDCTMVLAISDGKL 1198
++D T + +Q I + + TV+ V H + V VL I +GK+
Sbjct: 160 PLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 21/204 (10%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
+ IS G G++G G+GKTT + L+EP G+I +G +S+ ++++
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKN 72
Query: 1062 RFGIIPQDPTLF-NGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120
R G +P++ L+ TV L L++ L E ++ + L+ L +
Sbjct: 73 RIGYLPEERGLYPKMTVEDQLKYLAE---------LKGMPKAEIQKKLQAWLERLEIVGK 123
Query: 1121 SN-----WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFAD-CTV 1174
S G +Q A++ +L+LDE + +D +L+ I + T+
Sbjct: 124 KTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATI 183
Query: 1175 ITVAHRIPTVMD-CTMVLAISDGK 1197
I +HR+ V + C +L + G+
Sbjct: 184 IFSSHRMEHVEELCDRLLMLKKGQ 207
|
Length = 300 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 27/211 (12%)
Query: 1018 IVGRTGSGKTTLIGALFRLVE--PA---GGKILVDGIDISKLGLHD--LRSRFGIIPQDP 1070
I+G +G GK+T + A+ R+ + P+ G ++ DG DI + LR + G++ Q P
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129
Query: 1071 TLFNGTVRYNL---DPLSQHTDQ----EIWE-VLAKCHLGEAVREKENGLDSLVVEDGSN 1122
F ++ N+ L D+ EI E L K L + V ++ LD ++
Sbjct: 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDR---LD----KNALG 182
Query: 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRI- 1181
S GQ+Q C+ R L IL+LDE T+++D ++ I+ T++ V H +
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQ 242
Query: 1182 --PTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210
V D TM +G L E+ +L
Sbjct: 243 QASRVSDYTMFF--YEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 2e-06
Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 17/204 (8%)
Query: 995 YRPDSPLVLKG---ISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI 1051
Y+P+SP + I + G ++G TGSGK+TL+ L L++P GK+ V I +
Sbjct: 11 YQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV 70
Query: 1052 SKLG----LHDLRSRFGIIPQDP--TLFNGTVRYNL--DPLSQHTDQEIWEVLAKCHLGE 1103
S + +R + G++ Q P LF TV ++ P + +E E +A L
Sbjct: 71 SSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEM 130
Query: 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQK 1163
E S G GQ + + L +LVLDE TA +D + + +
Sbjct: 131 VGLADEFWEKSPFELSG-----GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ 185
Query: 1164 TIRA-EFADCTVITVAHRIPTVMD 1186
+ + TV+ V H + V D
Sbjct: 186 LFESIHQSGQTVVLVTHLMDDVAD 209
|
Length = 288 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 30/219 (13%)
Query: 1000 PLVLK---GISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG- 1055
P LK G++ G +G+VG +G GK+T A+ LV+ G++ G D+ +
Sbjct: 31 PKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKD 90
Query: 1056 --LHDLRSRFGIIPQDPTLFNGTVRYNL-----DPLSQHTDQEIWEVLAKCHLGEAVRE- 1107
+RS +I QDP L + R + +PL + + L++ + + V+
Sbjct: 91 DEWRAVRSDIQMIFQDP-LASLNPRMTIGEIIAEPLRTYHPK-----LSRQEVKDRVKAM 144
Query: 1108 --KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID---NATDMILQ 1162
K L +L+ +S GQ Q + RAL+ ++++ DE +++D A + L
Sbjct: 145 MLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLL 204
Query: 1163 KTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEY 1201
+ ++ E ++I +AH D +V ISD L Y
Sbjct: 205 QQLQREM-GLSLIFIAH------DLAVVKHISDRVLVMY 236
|
Length = 331 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 56/270 (20%), Positives = 99/270 (36%), Gaps = 59/270 (21%)
Query: 440 IALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQ----------TKLMVAQDERL 489
+A+ + A+ + + ++ V L +L K +KL VA E
Sbjct: 280 VAVALALVAIAVTLVLG----LLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAE-- 333
Query: 490 KACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQ-LRKAYNTF----LFWSSP 544
W F ++ + + + + + LF ++
Sbjct: 334 -----------NRAFARWAKLFSRQRKLELSAQ-RIENLLTVFNAVLPVLTSAALFAAAI 381
Query: 545 VLVSTATFGACYFLNVPLYASNVFTFV-ATLRLVQDPIRVIPDVIGVFIQANVAFSRIVN 603
L+ A FL + + +F A +L + ++ V + R
Sbjct: 382 SLLGGAGLSLGSFLA---FNTAFGSFSGAVTQLSN----TLISILAVIPL----WERAKP 430
Query: 604 FLEA-PELQSMNI---RQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKV 659
LEA PE+ + G IE V+ V +F + + ++SL++ PG+ V
Sbjct: 431 ILEALPEVDEAKTDPGKLSGAIE-VDRV------TFRYRPDGP-LILDDVSLQIEPGEFV 482
Query: 660 AICGEVGSGKSTLLAAILG-EVPHTQGTIL 688
AI G GSGKSTLL +LG E P + G++
Sbjct: 483 AIVGPSGSGKSTLLRLLLGFETPES-GSVF 511
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 3e-06
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+SL V G+ VA+ G G+GK+TLL I+G +P G+I
Sbjct: 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+I+L V G+ VAI G G GKSTLL I G T G +L
Sbjct: 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
|
Length = 248 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 58/210 (27%), Positives = 104/210 (49%), Gaps = 26/210 (12%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD---L 1059
L+G++ G + G +G+GK+TL+ + + P+ GKI G DI++L + L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 1060 RSRFGIIPQD-PTLFNGTVRYNLD-PLSQHTDQEIWEVLAKCHLGEAVREKENGLDSL-V 1116
R + G+I QD L + TV N+ PL ++A + R LD + +
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPL----------IIAGASGDDIRRRVSAALDKVGL 127
Query: 1117 VEDGSNW----SMGQRQLFCLGRALLRRSRILVLDEATASIDNA-TDMILQKTIRAEF-- 1169
++ N+ S G++Q + RA++ + +L+ DE T ++D+A ++ IL+ + EF
Sbjct: 128 LDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR--LFEEFNR 185
Query: 1170 ADCTVITVAHRIPTVMDCTM-VLAISDGKL 1198
TV+ H I + + +L +SDG L
Sbjct: 186 VGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 43/161 (26%), Positives = 85/161 (52%), Gaps = 9/161 (5%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062
LK ++ T G ++G G+GK+TL+ L + EP G I ++ I+ +KL H L ++
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD-HKLAAQ 79
Query: 1063 FG--IIPQDPTLFNG-TVRYNLDPLSQHTDQEIWEV----LAKCHLGEAVREKENGLDSL 1115
G II Q+ ++ + TV NL + +H +++ V + + A+ GL
Sbjct: 80 LGIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD 138
Query: 1116 VVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA 1156
+ E +N S+ +Q+ + + L+ ++++++DE T+S+ N
Sbjct: 139 LDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNK 179
|
Length = 510 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 15/205 (7%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG---GKILVDGIDISKLGLHDL 1059
L +S G + + G G+GK+TL+ L V P G G+I+ +G ++ + D
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGTYEGEIIFEGEELQASNIRDT 79
Query: 1060 -RSRFGIIPQDPTLF-NGTVRYNL---DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDS 1114
R+ II Q+ L +V N+ + ++ + + + + + + LD
Sbjct: 80 ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQ--KLLAQL--KLDI 135
Query: 1115 LVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA-DCT 1173
N +GQ+QL + +AL +++R+L+LDE TAS+ + +L IR A
Sbjct: 136 NPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIA 195
Query: 1174 VITVAHRIPTVMD-CTMVLAISDGK 1197
I ++H++ V + I DG+
Sbjct: 196 CIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 3e-06
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 625 NHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
+ + +++ + ++ P +N++L + G+++AI GE G GK+TLL ++GE+
Sbjct: 317 RNALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS 373
Query: 685 GTI 687
GT+
Sbjct: 374 GTV 376
|
Length = 530 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-06
Identities = 64/243 (26%), Positives = 107/243 (44%), Gaps = 42/243 (17%)
Query: 990 DLQIRYRPDSPLV--LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD 1047
+L I + + + ++ +S + + G + IVG +GSGK+ AL RL+E AGG + D
Sbjct: 17 NLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCD 76
Query: 1048 G----------IDISKLGLHDLRSRFG----IIPQDPTLFNGTVRYNLDPLSQHTDQEIW 1093
I++S+ +R G +I Q+P +L+P+ +Q I
Sbjct: 77 KMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMT-------SLNPVFTVGEQ-IA 128
Query: 1094 EVLAKCHLG----EAVREKENGLDSLVVEDGS--------NWSMGQRQLFCLGRALLRRS 1141
E + + H G EA+ E + LD + + + S G RQ + AL R
Sbjct: 129 ESI-RLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRP 187
Query: 1142 RILVLDEATASID-NATDMILQ--KTIRAEFADCTVITVAHRIPTVMDCT-MVLAISDGK 1197
+L+ DE T ++D ILQ K ++ E VI + H + V + VL + G+
Sbjct: 188 AVLIADEPTTALDVTIQAQILQLIKVLQKEM-SMGVIFITHDMGVVAEIADRVLVMYQGE 246
Query: 1198 LAE 1200
E
Sbjct: 247 AVE 249
|
Length = 623 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH---TQGTIL 688
K ++ ++L V+ G+ AI G GSGKSTL I G P T GTIL
Sbjct: 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTIL 60
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD-LR 1060
L +S G + ++G G+GKTTL+G L G+I+ DG DI+ +R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 1061 SRFGIIPQDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVED 1119
I+P+ +F+ TV NL +++ ++ + V E L ++
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPRLHERRIQR 134
Query: 1120 GSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQ 1162
S G++Q+ +GRAL+ + R+L+LDE S+ A +I Q
Sbjct: 135 AGTMSGGEQQMLAIGRALMSQPRLLLLDE--PSLGLAPIIIQQ 175
|
Length = 237 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-06
Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 47/216 (21%)
Query: 997 PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK-ILVDGIDISKLG 1055
P +LK IS +F G KIG++G G+GK+TL+ + + + G+ GI +
Sbjct: 15 PPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKV---- 70
Query: 1056 LHDLRSRFGIIPQDPTL-FNGTVRYN-----------LDPLSQHTDQ------------- 1090
G +PQ+P L TVR N LD ++ + +
Sbjct: 71 --------GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLA 122
Query: 1091 ---EIWEVLAKCHLGEAVREKENGLDSLVVEDG----SNWSMGQRQLFCLGRALLRRSRI 1143
E+ E++ + R+ E +D+L + S G+R+ L R LL + +
Sbjct: 123 EQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDM 182
Query: 1144 LVLDEATASIDNATDMILQKTIRAEFADCTVITVAH 1179
L+LDE T +D + L++ ++ E+ TV+ V H
Sbjct: 183 LLLDEPTNHLDAESVAWLEQHLQ-EYPG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
R++S ++ PG+ + I GE GSGKSTLL + G + GT
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA 60
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-06
Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 15/145 (10%)
Query: 556 YFLNVPLYASNVFTF------VATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEA-- 607
+ P Y S TF V V + D R+ F +A
Sbjct: 308 ILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALE 367
Query: 608 -----PELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAIC 662
E + R+ +N +H I++++ S + + ++ EVRPG+++ I
Sbjct: 368 AAQMDTEKPARTGRRIDFDDNADHGITLENLSL--RTPDGQTLLSELNFEVRPGERLLIT 425
Query: 663 GEVGSGKSTLLAAILGEVPHTQGTI 687
GE G+GK++LL A+ G P G I
Sbjct: 426 GESGAGKTSLLRALAGLWPWGSGRI 450
|
Length = 604 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 639 ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG----EVPHTQGTIL 688
K ++ ++L ++ G+ A+ G GSGKSTL I+G EV T+G IL
Sbjct: 9 SVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV--TEGEIL 60
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 5e-06
Identities = 43/180 (23%), Positives = 84/180 (46%), Gaps = 22/180 (12%)
Query: 1017 GIVGRTGSGKTTLIGALFR---LVEPAG--GKILVDGIDI--SKLGLHDLRSRFGIIPQD 1069
++G +G GK+T + L R LVE G ++ +G +I + + +LR + G++ Q
Sbjct: 37 ALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQT 96
Query: 1070 PTLFNGTVRYNLD--------PLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121
P F ++ N+ + D+ + + L K L V++K N +
Sbjct: 97 PNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLN-------TNAL 149
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRI 1181
+ S GQ+Q C+ R L ++++DE T+++D + +++ I T+I V H +
Sbjct: 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNM 209
|
Length = 254 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 42/203 (20%), Positives = 90/203 (44%), Gaps = 22/203 (10%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFR---LVEP--AGGKI 1044
+L + Y S L +K + +G +G GK+T++ R L+ GK+
Sbjct: 15 NLNVYY--GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV 72
Query: 1045 LVDGIDI--SKLGLHDLRSRFGIIPQDPTLFNGTVRYNL------DPLSQHTDQEIWEVL 1096
G ++ + ++R R G++ Q P F ++ N+ + D+ + L
Sbjct: 73 TFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSL 132
Query: 1097 AKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA 1156
+ L + V++K + G + S GQ+Q C+ RA+ + ++++DE +++D
Sbjct: 133 RQAALWDEVKDKLK-------QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPI 185
Query: 1157 TDMILQKTIRAEFADCTVITVAH 1179
+ + +++ + T+I V H
Sbjct: 186 STLRIEELMHELKEQYTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 6e-06
Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT--QGTIL 688
N+SL+VR G+ V++CGE G+GKSTL+ + G PH +G I+
Sbjct: 23 NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEII 65
|
Length = 506 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 6e-06
Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 31/225 (13%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
L +R+ L + ++ + ++G G+GKTT+ L +P GG IL+ G
Sbjct: 10 GLMMRF--GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQ 67
Query: 1050 DISKLGLHDLRSRFGIIP--QDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVR 1106
I L H + +R G++ Q LF TV NL ++QH + + + A R
Sbjct: 68 HIEGLPGHQI-ARMGVVRTFQHVRLFREMTVIENL-LVAQHQQLKT-GLFSGLLKTPAFR 124
Query: 1107 EKEN-------------GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI 1153
E+ GL N + GQ++ + R ++ + IL+LDE A +
Sbjct: 125 RAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGL 184
Query: 1154 DNATDMILQKTI---RAEFADCTVITVAHRIPTVMDCTMVLAISD 1195
+ L + I R E + TV+ + H D +V+ ISD
Sbjct: 185 NPKETKELDELIAELRNEH-NVTVLLIEH------DMKLVMGISD 222
|
Length = 255 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 7e-06
Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 21/220 (9%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA-----GGKILVDGIDI--SKLG 1055
LK I+ + I+G +G GK+T I L +++ G++ +G +I K+
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 1056 LHDLRSRFGIIPQD----PTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAV-REKEN 1110
L +LR G++ Q P V Y +++ E++ K A+ E ++
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA 1170
L + + + S GQ+Q C+ RAL +L++DE T+++D + +++ I
Sbjct: 148 RLHTQAL----SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE 203
Query: 1171 DCTVITVAHRI---PTVMDCTMVLAISDGKLAEYDEPMKL 1207
T++ V H + V D T + G+L E ++ K+
Sbjct: 204 KYTIVIVTHNMQQAARVSDQTAFFYM--GELVECNDTNKM 241
|
Length = 259 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 8e-06
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTILQNSWLAANVEN 699
+ + +ISL+++ G+ VA+ G G+GKSTLL I G E P G I N + +V N
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-DAGRIRLNGRVLFDVSN 71
Query: 700 PNVSTLRLIVVYLLIGFV 717
V + +GFV
Sbjct: 72 LAVRDRK-------VGFV 82
|
Length = 345 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 9e-06
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 601 IVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVA 660
+V FLE P +Q N ++I++ K ++ + GQ++A
Sbjct: 324 LVTFLETPLAHP---QQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIA 380
Query: 661 ICGEVGSGKSTLLAAILGEVPHTQGTILQN 690
+ G G+GK++LL A+LG +P+ QG++ N
Sbjct: 381 LVGPSGAGKTSLLNALLGFLPY-QGSLKIN 409
|
Length = 588 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 9e-06
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ ++++S E++PG ++ I G G+GKS+L A+ G P G I
Sbjct: 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 9e-06
Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 20/179 (11%)
Query: 1016 IGIVGRTGSGKTTLIGALFRLVE--PAG---GKILVDGIDI--SKLGLHDLRSRFGIIPQ 1068
I +G +G GK+TL+ R+ + P G++L +I S++ LR + G++ Q
Sbjct: 49 IAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQ 108
Query: 1069 DPTLFNGTVRYNL------DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSN 1122
P F ++ N+ + + D+ + + L + + E V++K + E G+
Sbjct: 109 RPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK-------LKEKGTA 161
Query: 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRI 1181
S GQ+Q C+ RA+ + +L++DE +++D + +++ T+I V H +
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 50/171 (29%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VL IS G + ++G +GSGKTTL+ + L G I G D+S+ LH
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR--LHARDR 74
Query: 1062 RFGIIPQDPTLFN-----GTVRYNLDPLSQHTDQEIWEVLAKC-HLGEAVREKENGLDSL 1115
+ G + Q LF + + L L + + AK L E V+ L L
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQ-----LAHL 129
Query: 1116 VVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR 1166
+ S GQ+Q L RAL +IL+LDE ++D L++ +R
Sbjct: 130 ADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLR 180
|
Length = 353 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 39/201 (19%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL---VEPA--GGKILVDGIDI--SKLG 1055
L + +G +G GK+T + L R+ ++ GKI +DG DI +L
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 1056 LHDLRSRFGIIPQDPTLFNGTVRYN---------LDPLSQHTDQEIWEVLAKCHLGEAVR 1106
+ +LR+R G++ Q P F ++ N L D+ + L K L E V+
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDE--------ATASIDNATD 1158
++ + E G+ S GQ+Q C+ RA+ ++++DE ATA ++ D
Sbjct: 155 DRLH-------EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207
Query: 1159 MILQKTIRAEFADCTVITVAH 1179
+R + T++ V H
Sbjct: 208 -----ELRQNY---TIVIVTH 220
|
Length = 267 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 593 QANVAFSRIVNFLEAPELQ-SMNIR--QKGNIENVNHVISIKSASFSWEESSSKPTMRNI 649
QA VA R+ ++ P Q + R Q G I+ I + SF++ + ++NI
Sbjct: 310 QAVVAGERVFELMDGPRQQYGNDDRPLQSGRID-------IDNVSFAYRDD--NLVLQNI 360
Query: 650 SLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+L V VA+ G GSGKSTL + ++G P T+G I
Sbjct: 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399
|
Length = 592 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+ NISL ++PG+ V I G GSGKSTL I G +L
Sbjct: 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
KP ++ IS ++ G+ + I G GSGKSTL ++G P T G++
Sbjct: 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV 393
|
Length = 580 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTIL 688
++++LE+ G+ VAI G GSGKSTLL +LG + P T G +L
Sbjct: 22 KDVNLEIEAGEFVAIVGPSGSGKSTLL-NLLGGLDKP-TSGEVL 63
|
Length = 226 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 640 SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVEN 699
+ + NISL VR G+ +AI G G GKSTLL + + T GT+L + +V
Sbjct: 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL---FEGEDVST 69
Query: 700 PNVSTLRLIVVYL 712
R V Y
Sbjct: 70 LKPEAYRQQVSYC 82
|
Length = 223 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 627 VISIKSASFSWEESSSK-PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG 678
+I + S + + + ++ + L V+ G+ VAI G GSGKSTLLA + G
Sbjct: 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG 58
|
Length = 228 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 34/192 (17%)
Query: 987 DICDLQIRYRPDSPL--VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL-----VEP 1039
I +L + +R + V+ +S E G + +VG +GSGK+ ++ RL V
Sbjct: 7 AIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVY 66
Query: 1040 AGGKILVDGIDISKLGLHDLR----SRFGIIPQDPTLFNGTVRYNLDPLSQHT-DQEIWE 1094
G I G + LR ++ +I Q+P + +L+PL HT +++++E
Sbjct: 67 PSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV-------SLNPL--HTLEKQLYE 117
Query: 1095 VLAKCHLG---EAVR-EKENGLDSLVVEDGSN--------WSMGQRQLFCLGRALLRRSR 1142
VL+ H G EA R E N LD + + + S G+RQ + ALL R
Sbjct: 118 VLS-LHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPE 176
Query: 1143 ILVLDEATASID 1154
+L+ DE T ++D
Sbjct: 177 LLIADEPTTALD 188
|
Length = 529 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH 682
I LEVRPG+ V +CGE G+GKSTL+ + G PH
Sbjct: 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPH 53
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 1e-05
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
S K +R++S EVR G+ V I G VG+G++ L A+ G P G I
Sbjct: 11 SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT 58
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 25/154 (16%)
Query: 1013 GHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL----RSRFGIIPQ 1068
G ++ I+G +G+GK+TL+ + + PA G + ++G D H R ++ Q
Sbjct: 25 GERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD------HTTTPPSRRPVSMLFQ 78
Query: 1069 DPTLFNG-TVRYN----LDP-LSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSN 1122
+ LF+ TV N L+P L + Q + L R+ G++ L+
Sbjct: 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQ-------REKLHAIARQM--GIEDLLARLPGQ 129
Query: 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNA 1156
S GQRQ L R L+R IL+LDE +++D A
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
|
Length = 232 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 33/229 (14%)
Query: 1005 GISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP----AGGKILVDGIDISKLGLHDLR 1060
++ + + G + +VG +GSGK+ A+ L+ P G+IL+DG + L +R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS---IR 60
Query: 1061 SR-FGIIPQDP-TLFN----------GTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREK 1108
R I Q+P T FN T+R Q + + + +
Sbjct: 61 GRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL-----ILEALEAVGLPDP 115
Query: 1109 ENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID---NATDMILQKTI 1165
E L + M QR + L ALL L+ DE T +D A + L + +
Sbjct: 116 EEVLKKYPFQLSG--GMLQRVMIAL--ALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171
Query: 1166 RAEFADCTVITVAHRIPTVMDCT-MVLAISDGKLAEYDEPMKLMKREGS 1213
R F ++ + H + V V + DG++ E ++
Sbjct: 172 RQLF-GTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKH 219
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 56/215 (26%), Positives = 85/215 (39%), Gaps = 40/215 (18%)
Query: 1009 TFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS-KLGLHDLRSRFGIIP 1067
G IGI+G G GKTT + L +++P G + + +S K P
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYK-------------P 407
Query: 1068 QD-PTLFNGTVR---YNLDPLSQHTDQEIW-EVLAKCHLGEAVREKENGLDSLVVEDGSN 1122
Q ++GTV + S E++ +L E+ L+ V
Sbjct: 408 QYISPDYDGTVEDLLRSAIR-SAFGSSYFKTEIVKPLNL-------EDLLERPV----DE 455
Query: 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR--AEFADCTVITVAHR 1180
S G+ Q + AL R + + +LDE +A +D +I+ K IR E + T + V H
Sbjct: 456 LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHD 515
Query: 1181 I---PTVMDCTMVLAISDGKLAEYDEPMKLMKREG 1212
I V D +V GK PM + REG
Sbjct: 516 IYMIDYVSDRLIVFEGEPGKHGHASPPMSM--REG 548
|
Length = 591 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 49/167 (29%), Positives = 67/167 (40%), Gaps = 37/167 (22%)
Query: 1005 GISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF- 1063
G+S T G + I G G+GKT+L+ L L P G++L G I + R +
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRR-----QRDEYH 73
Query: 1064 ----------GIIPQDPTLFNGTVRYNLD---PLSQHTDQE-IWEVLAKCHLGEAVREKE 1109
GI L T NL L D E +WE LA+ +G A E
Sbjct: 74 QDLLYLGHQPGI---KTEL---TALENLRFYQRLHGPGDDEALWEALAQ--VGLAGFE-- 123
Query: 1110 NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA 1156
D V S GQ++ L R L R+ + +LDE +ID
Sbjct: 124 ---DVPV----RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQ 163
|
Length = 204 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTIL 688
K ++ ++L V+ G+ AI G GSGKSTL I+G + T+G IL
Sbjct: 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEIL 64
|
Length = 251 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 639 ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
E++ KP ++++ ++PGQKV ICG GSGKS+L A V G I+
Sbjct: 30 ENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV 79
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 604 FLEAPELQSM--------NIRQKGN---IENVNHVISIKSASFSWEESSSKPTMRNISLE 652
F+ AP+L+ ++R + V + SFS++ +S+ + ++S E
Sbjct: 300 FMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYD--NSRQGVEDVSFE 357
Query: 653 VRPGQKVAICGEVGSGKSTLLA 674
+PGQ VAI G G+GKSTL+
Sbjct: 358 AKPGQTVAIVGPTGAGKSTLIN 379
|
Length = 588 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 57/232 (24%), Positives = 103/232 (44%), Gaps = 38/232 (16%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
V+ ++ T + G + ++G +G GKTT++ + L +P G+I +DG D++ ++
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH---RSIQQ 77
Query: 1062 R-FGIIPQDPTLF-----NGTVRYNLDPLSQHTD---QEIWEVLAKCHLGEAVREKENGL 1112
R ++ Q LF V Y L L + Q + E L L G
Sbjct: 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA--------GF 129
Query: 1113 DSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR--AEFA 1170
+ V+ S GQ+Q L RAL+ + ++L+ DE +++D +++ IR +
Sbjct: 130 EDRYVDQISG---GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF 186
Query: 1171 DCTVITVAHRIPTVMDCTMVLAISD-------GKLAEYDEPMKLMKREGSLF 1215
+ T + V H D + A+SD GK+ + P +L ++ S F
Sbjct: 187 NITSLYVTH------DQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232
|
Length = 351 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 23/212 (10%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
VD+ + R + + IS T G I+G +G GKTTL+ + + P G+IL
Sbjct: 8 VDMRGVSFT-RGNRC-IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL 65
Query: 1046 VDGIDI---SKLGLHDLRSRFGIIPQDPTLFNG-TVRYNLD-PLSQHTD--QEIWE--VL 1096
DG +I S+ L+ +R R ++ Q LF V N+ PL +HT + V+
Sbjct: 66 FDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVM 125
Query: 1097 AKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA 1156
K EAV GL S S G + L RA+ +++ DE D
Sbjct: 126 MKL---EAV-----GLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPI 177
Query: 1157 TDMILQKTIRAEFADC---TVITVAHRIPTVM 1185
T +L K I +E T + V+H +P V+
Sbjct: 178 TMGVLVKLI-SELNSALGVTCVVVSHDVPEVL 208
|
Length = 269 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 39/242 (16%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFR---LVEPA- 1040
+++ +L + Y L IS +G +G GK+TL+ R LV+
Sbjct: 25 ALEVRNLNLFYGDKQ--ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 1041 -GGKILVDGIDI--SKLGLHDLRSRFGIIPQDPTLFNGT----VRYNLDPLSQHTDQEIW 1093
G+I +DG +I K+ + +LR R G++ Q P F + V Y L +
Sbjct: 83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGL---------RLQ 133
Query: 1094 EVLAKCHLGEAVREKENGLDSLVV---------EDGSNWSMGQRQLFCLGRALLRRSRIL 1144
+ + L EAV E L + E+ S GQ+Q + RA+ +L
Sbjct: 134 GINNRRVLDEAV---ERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVL 190
Query: 1145 VLDEATASIDNATDMILQKTIRAEFADCTVITVAHRI---PTVMDCTMVLAISDGKLAEY 1201
+LDE T+++D + + +++ I + T++ V H + V D T + + GKL EY
Sbjct: 191 LLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYM--GKLVEY 248
Query: 1202 DE 1203
+
Sbjct: 249 GD 250
|
Length = 272 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
P ++N+S +V+ G+K+ I G G+GKSTL+ A+ + +G I
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE 66
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 72/355 (20%), Positives = 136/355 (38%), Gaps = 34/355 (9%)
Query: 353 LAITLFVAKILESLSQRQWYFR-------SRLIGLKVRSLLTAAIYKKQLRLSNAARLMH 405
LA +F +L S R I L++R +++ LR +
Sbjct: 200 LASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIR----EDLFRSLLRQDLGFFDEN 255
Query: 406 SGGEIMNYVTVDAYRIGE-FPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITV 464
GE+ + ++ D + + + V L L + T+ L+ + +
Sbjct: 256 KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVF 315
Query: 465 LCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWE----THFKNAIEILRN 520
L K +L A + + EAL M+ ++ +A E + FK A+E
Sbjct: 316 LAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQ 375
Query: 521 VEYKWLSAVQLRKAYNTFLFWSSPVL-----VSTATFGACYFLNVPLYASNVFTFVATLR 575
+ + + W++ VL V +G L + + N+ +F+
Sbjct: 376 LNKR-------KALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQE 428
Query: 576 LVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNI--ENVNHVISIKSA 633
+ + +RV+ V +QA A ++ +L+ NI G + N+ +I +
Sbjct: 429 QLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKP----NIPLTGTLAPLNLEGLIEFQDV 484
Query: 634 SFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
SFS+ P ++ ++ + PG+ VA+ G GSGKST+ A + T G +L
Sbjct: 485 SFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL 539
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
R +SLEV G+ + G G GK+TLL ++G +P G+I
Sbjct: 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI 57
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 51/241 (21%), Positives = 95/241 (39%), Gaps = 20/241 (8%)
Query: 458 VVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLY---AWETHFKNA 514
V I++T+ L +K +D+ L K L L A H
Sbjct: 155 VWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLY 214
Query: 515 IEILRNVEYKWLSAVQLRKAYNTF----LFWSSPVLVSTATFGACYFLNVPLYASNV-FT 569
I + + + A NTF + WS+ +L+ L++ ++NV T
Sbjct: 215 IPDAQEYRHHIIRA-------NTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAAT 267
Query: 570 FVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVIS 629
V L ++ P+ ++ + A VAF++I AP + +
Sbjct: 268 IVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADF---PRPQAFPDWKTLE 324
Query: 630 IKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689
+++ F++++++ + I+L ++ G+ V + G GSGKSTL + G G IL
Sbjct: 325 LRNVRFAYQDNAFH--VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
Query: 690 N 690
+
Sbjct: 383 D 383
|
Length = 546 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-05
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 10/163 (6%)
Query: 552 FGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRI--VNFLEAPE 609
GA + L + TF A L P+ I ++ A VA +R+ V +++
Sbjct: 399 TGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEF 458
Query: 610 LQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGK 669
+ +++ + N+N I I S+S+ S + +ISL ++ K I G GSGK
Sbjct: 459 INK---KKRTELNNLNGDIVINDVSYSYGYGS--NILSDISLTIKMNSKTTIVGMSGSGK 513
Query: 670 STLLAAILGEVPHTQGTILQNSWLAANVENPNVSTLRLIVVYL 712
STL ++G G IL N + +++ TLR + YL
Sbjct: 514 STLAKLLVGFFQARSGEILLNGFSLKDID---RHTLRQFINYL 553
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 4e-05
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+ISL V G+ + G G+GK+TL+ ILG + G I
Sbjct: 17 DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I ++ S + +K + +++L + G+ + + G GSGK+T L I + T G I
Sbjct: 2 IEFENVSKRY---GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 688 LQNSWLAANVENPNVSTLRLIVVYLL 713
L + ++ + + LR + Y++
Sbjct: 59 LIDG---EDISDLDPVELRRKIGYVI 81
|
Length = 309 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+++S EV G+++ + G G+GKSTLL + G P GT+
Sbjct: 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV 79
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 51/163 (31%), Positives = 74/163 (45%), Gaps = 19/163 (11%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG----LHD 1058
L ++ T E G +G TGSGK+T++ L L P G + VD I+ +
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 1059 LRSRFGIIPQDP--TLFNGTVRYNL--DPLSQHTDQEIWEVLAKCHLGEAVREKEN--GL 1112
+R + G++ Q P LF TV ++ P + QE E LA REK G+
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALA--------REKLALVGI 134
Query: 1113 D-SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
SL ++ S GQ + + L +ILVLDE TA +D
Sbjct: 135 SESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
|
Length = 280 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
++ ++ +F++ ++++S + PG+ A+ G GSGKST++A + G
Sbjct: 11 IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQ 70
Query: 687 IL 688
+L
Sbjct: 71 VL 72
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
S + ++SL V PG+ +A+ G G GK+TLL I G G IL
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 639 ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ +KP + ++SL V G+ + G G+GK+T L + GE+ T GT
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690
+ +R++S + G+ V + G G+GKSTLL I GE T+G IL N
Sbjct: 13 GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVN 62
|
Length = 223 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
P ++N+SL V G+ VA+ G G+GKSTLL ++ G IL
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL 66
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 5e-05
Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 23/146 (15%)
Query: 1018 IVGRTGSGKTTLIGALFRLVEPAGGKILVDG---IDI-SKLGLHDLRSRFGIIPQDPTLF 1073
I GR+G+GKT+LI A+ L P G+I+++G D + L + R G + QD LF
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLF 88
Query: 1074 -NGTVRYNLDPLSQHTDQE----IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128
+ VR NL + I +L G++ L+ + S G++
Sbjct: 89 PHYKVRGNLRYGMAKSMVAQFDKIVALL--------------GIEPLLDRYPGSLSGGEK 134
Query: 1129 QLFCLGRALLRRSRILVLDEATASID 1154
Q +GRALL +L++DE AS+D
Sbjct: 135 QRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 6e-05
Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 26/182 (14%)
Query: 988 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGAL--FRLVEPAGGKIL 1045
I DL + +LKG++ T + G I+G GSGK+TL + E G+IL
Sbjct: 6 IKDLHVEVEGKKE-ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEIL 64
Query: 1046 VDGIDISKLGLHDLRSRFGIIP--QDPTLFNG-----------TVRYNLDPLSQHTDQEI 1092
DG DI +L + R+R GI Q P G R + +E+
Sbjct: 65 FDGEDILELSPDE-RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKEL 123
Query: 1093 WEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATAS 1152
E L E E+ V +G +S G+++ + + LL ++ +LDE +
Sbjct: 124 KEKAELLGLDEEFLERY-------VNEG--FSGGEKKRNEILQLLLLEPKLAILDEPDSG 174
Query: 1153 ID 1154
+D
Sbjct: 175 LD 176
|
Length = 251 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 7e-05
Identities = 44/203 (21%), Positives = 84/203 (41%), Gaps = 33/203 (16%)
Query: 494 EALVNMKVLKLYAWETHFKNAIEILRNVEYK--------------WLSAVQLRKAYNTFL 539
EA NM + +Y E +F N IE + ++Y W + + N+F
Sbjct: 1027 EAFYNMNTVIIYGLEDYFCNLIE--KAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFA 1084
Query: 540 FWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFS 599
+W L+ T + V + ++FTF+ T + + D A ++F
Sbjct: 1085 YWFGSFLIRRGT------ILVDDFMKSLFTFLFTGSYAGKLMSLKGDSE----NAKLSFE 1134
Query: 600 RIVNFLEAPELQSMNIRQKG--NIENVNHV---ISIKSASFSWEESSSKPTMRNISLEVR 654
+ + +++R G I+N N + I I +F + + P ++++
Sbjct: 1135 KYYPLIIRKSN--IDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCD 1192
Query: 655 PGQKVAICGEVGSGKSTLLAAIL 677
+ AI GE GSGKST+++ ++
Sbjct: 1193 SKKTTAIVGETGSGKSTVMSLLM 1215
|
Length = 1466 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-05
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
K + +SLE+ G V + G G+GKSTLL AI G++ T G IL
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQIL 64
|
Length = 263 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-05
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
ISL +R GQ + + GE GSGKSTL A+L +P +QG I
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEI 343
|
Length = 534 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 640 SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+ K ++NI+L + PG+ VAI G G+GKSTLL I V + G+IL
Sbjct: 12 PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 9e-05
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
KP + +I+L + G+ + + G G GK+TLL I G VP+ G+I
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
|
Length = 255 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 9e-05
Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 34/212 (16%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
D+ + +R + L+ S T GG +VG GSGK+TL AL V A GKI + G
Sbjct: 11 DVTVTWR-NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ 69
Query: 1050 DISKLGLHDLRSRFGIIPQD-------PTLFNGTV---RYN----LDPLSQHTDQEIWEV 1095
+ +L +PQ P L V RY L + Q +
Sbjct: 70 PTRQALQKNL---VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAA 126
Query: 1096 LAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDN 1155
LA+ + E R ++ G S GQ++ L RA+ ++ ++++LDE +D
Sbjct: 127 LARVDMVE-FRHRQIG----------ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDV 175
Query: 1156 ATD---MILQKTIRAEFADCTVITVAHRIPTV 1184
T+ + L + +R E T++ H + +V
Sbjct: 176 KTEARIISLLRELRDE--GKTMLVSTHNLGSV 205
|
Length = 272 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ NIS + PGQ+V + G GSGKSTLL+A L + +T+G I
Sbjct: 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDI 60
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ K+ +F + P +R+ISL++ G+ VA+ G GSGKSTL+ I G I
Sbjct: 1 VEFKNVTFRYPGDG-PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 688 L 688
L
Sbjct: 60 L 60
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
I++ SFS+++ + + ++SL++ G+ +A+ G+ G+GK+TL + G + + G+IL
Sbjct: 1 RIENISFSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 689 QN 690
N
Sbjct: 59 LN 60
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-04
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
++S VRPG+ + G G+GK+TL I G + T G++L
Sbjct: 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVL 58
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
R++S VR G+ + I G VG+G++ L A+ G P + G IL
Sbjct: 276 RDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEIL 317
|
Length = 500 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTILQN 690
++ +SL + G+ VAI G GSGKSTLL +LG + P T G +L N
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLL-HLLGGLDNP-TSGEVLFN 65
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 621 IENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV 680
+E+ N +I K+ SF ++ S + T++++S + GQ +I G GSGKST+ ++G
Sbjct: 1 MEDKNSIIVFKNVSFQYQ-SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59
Query: 681 PHTQGTILQNSWLAANVENPNVSTLR 706
G I N+ + + N LR
Sbjct: 60 KVKSGEIFYNNQA---ITDDNFEKLR 82
|
Length = 269 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690
MR L V G++VAI G G+GKSTLL I G + G++ N
Sbjct: 15 PMR-FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLN 59
|
Length = 232 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 30/167 (17%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L+ I+ T E G + ++G +G GKTTL+ + V G I +DG + G +
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG-----A 70
Query: 1062 RFGIIPQDPTLF-----NGTVRYNLD----PLSQHTDQEIWEVLAKCHLGEAVREKENGL 1112
G++ Q+ L V + L Q + ++L K L A
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQR-LEIAHQMLKKVGLEGA-------- 121
Query: 1113 DSLVVEDGSNW--SMGQRQLFCLGRALLRRSRILVLDEATASIDNAT 1157
E W S GQRQ + RAL ++L+LDE ++D T
Sbjct: 122 -----EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT 163
|
Length = 255 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQ 684
++SIK S E+ K +R ++LEVRPG+ AI G GSGKSTL A + G + T
Sbjct: 1 MLSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG 57
Query: 685 GTI 687
GT+
Sbjct: 58 GTV 60
|
Length = 248 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 626 HVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
+ +K+ S+ S +++++L++ G+ V + G G GKSTLL I G T G
Sbjct: 2 AELELKNVRKSF---GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSG 58
Query: 686 TIL 688
IL
Sbjct: 59 EIL 61
|
Length = 338 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 636 SWEESSSKPTM--------RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH---TQ 684
W + K ++SL V GQ +AI G GSGK+TLL AI G V T
Sbjct: 5 PWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTS 64
Query: 685 GTILQNS 691
G IL N
Sbjct: 65 GQILFNG 71
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690
+S +R GQ +AI GE GSGKSTL + G + T G IL N
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILIN 73
|
Length = 267 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 625 NHVISIKSASFSW---EESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTL 672
N +I K+ S+ + EES+ K + +++LEV+ G+ + I G GSGKST+
Sbjct: 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTI 52
|
Length = 280 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
++SL V+ G+ A+ GE G+GKSTL+ + G G I
Sbjct: 21 DDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62
|
Length = 501 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+S ++ G+ + + GE G GKSTL ILG T G IL
Sbjct: 31 GVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL 71
|
Length = 268 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 54/228 (23%), Positives = 89/228 (39%), Gaps = 36/228 (15%)
Query: 995 YRPDSPLV--LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA-GGKILVDG--I 1049
+ +P + +S + G +G+ G G+G+T L+ ALF G + ++G +
Sbjct: 266 WDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV 325
Query: 1050 DISKLG---------LHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCH 1100
DI + + R R GI+P N T L L K
Sbjct: 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNIT----LSVLKSFC--------FKMR 373
Query: 1101 LGEAVREK--ENGLDSLVVEDGS------NWSMGQRQLFCLGRALLRRSRILVLDEATAS 1152
+ A + + + L V+ S S G +Q L + LL R+L+LDE T
Sbjct: 374 IDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRG 433
Query: 1153 IDNATDMILQKTIRAEFAD-CTVITVAHRIPTVMDCT-MVLAISDGKL 1198
+D + K I + +I V+ + V+ + VL I +GKL
Sbjct: 434 VDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-04
Identities = 59/215 (27%), Positives = 87/215 (40%), Gaps = 54/215 (25%)
Query: 1016 IGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS-KLGLHDLRSRFGIIPQ----DP 1070
IGIVG G GKTT L +++P G++ + + IS K PQ D
Sbjct: 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYK-------------PQYIKPD- 412
Query: 1071 TLFNGTVRYNLDPLSQHTDQEIW--EVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128
++GTV L ++ + E++ L E LD V + S G+
Sbjct: 413 --YDGTVEDLLRSITDDLGSSYYKSEIIKPLQL-------ERLLDKNV----KDLSGGEL 459
Query: 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR--AEFADCTVITVAHRIPTVMD 1186
Q + L R + + +LDE +A +D + + K IR AE + T + V H D
Sbjct: 460 QRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDH------D 513
Query: 1187 CTMVLAISD---------GKLAEYDEPMKLMKREG 1212
M+ ISD GK PM + REG
Sbjct: 514 IYMIDYISDRLMVFEGEPGKHGHASGPMDM--REG 546
|
Length = 590 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 38/221 (17%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV---EPAGGKILVDGIDISKLG---- 1055
L + G + ++G +GSGK+TL+ L L+ + AG I + G + + G
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 1056 -LHDLRSRFGIIPQDPTLFNG-TVRYNL-------DPL--------SQHTDQEIWEVLAK 1098
+ R+ G I Q L N +V N+ P ++ Q + L +
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTR 139
Query: 1099 CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158
G+ + S S GQ+Q + RAL++++++++ DE AS+D +
Sbjct: 140 V-----------GMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA 188
Query: 1159 MILQKTIR--AEFADCTVITVAHRIPTVMD-CTMVLAISDG 1196
I+ T+R + TV+ H++ + C ++A+ G
Sbjct: 189 RIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229
|
Length = 262 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 26/215 (12%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG--IDISKL----G 1055
L I+ G + ++G +G+GK++L+ L L P G + + G D SK
Sbjct: 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 1056 LHDLRSRFGIIPQDPTLFNGTVRYNLDP-LS-QHTDQEIWEVLAKCHLGEAVREKENGLD 1113
+ DLR G++ Q +YNL P L+ Q E + +A+ E L
Sbjct: 77 IRDLRRNVGMVFQ---------QYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLK 127
Query: 1114 SLVVEDGSN-----WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE 1168
L ++ ++ S GQ+Q + RAL+ ++L+ DE TA++D + I+ E
Sbjct: 128 RLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIK-E 186
Query: 1169 FADC--TVITVAHRIPTVMD-CTMVLAISDGKLAE 1200
A+ T + V H + + V+ + +G + E
Sbjct: 187 LAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221
|
Length = 242 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE 679
+RN++LE++PG VA+ G+ G+GK+TLL ILG
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432
|
Length = 593 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 51/219 (23%), Positives = 85/219 (38%), Gaps = 20/219 (9%)
Query: 1006 ISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRFG 1064
+S G + +VG G+GK+TL+ + L+ P G I G + +L R R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 1065 IIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCH-LGEAVREKENGLDSLVVEDGSNW 1123
+ Q F V L L Q V + + + EA+ GLD + +
Sbjct: 74 LSQQQTPPFAMPVFQYLT-LHQPDKTRTEAVASALNEVAEAL-----GLDDKLGRSVNQL 127
Query: 1124 SMGQRQLFCLGRALLR-------RSRILVLDEATASIDNATDMILQKTIRAEFADC--TV 1174
S G+ Q L +L+ ++L+LDE S+D A L + + E V
Sbjct: 128 SGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLS-ELCQQGIAV 186
Query: 1175 ITVAHRIP-TVMDCTMVLAISDGKLAEYDEPMKLMKREG 1212
+ +H + T+ V + GKL +++ E
Sbjct: 187 VMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225
|
Length = 248 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
K + ++SL + G+ VA+ G GSGKSTLL I G G+IL
Sbjct: 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTIL 688
+ ++SL++ G+ VA+ G GSGK+TLL I G E P GTIL
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP-DSGTIL 60
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 20/184 (10%)
Query: 1011 EGGHKIGIVGRTGSGKTTLIGALFRLVEPAGG-----KILVDGIDISKLGLHDL--RSRF 1063
G +G +G GK+T++ +L R+ + G + G D+ G+ + R
Sbjct: 32 RKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYI 91
Query: 1064 GIIPQDPTLFNGTVRYN------LDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVV 1117
G++ Q P F+ ++ N L+ + L L + V++K +
Sbjct: 92 GMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LK 144
Query: 1118 EDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITV 1177
G + S GQ+Q C+ RA+ +L+LDE +++D +++ + D T+ V
Sbjct: 145 VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALV 204
Query: 1178 AHRI 1181
H +
Sbjct: 205 THNM 208
|
Length = 261 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 58/286 (20%), Positives = 113/286 (39%), Gaps = 71/286 (24%)
Query: 935 SSLVMSIQNQCTLANYIISVERLNQYMH-----------VPSEAPEVVEDNRPPPNWPVV 983
L+++ ++ LA + V+ L Q + V E R P
Sbjct: 384 GRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIE-SGREGGRNSNLVPGR 442
Query: 984 GKVDICDLQIRYR------PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTL---IGALF 1034
G V+ D I++ P+ ++++ +S G+ + I G G GK++L +G L+
Sbjct: 443 GIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELW 502
Query: 1035 -----RLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVR----YNLDPLS 1085
RL +PA GK+ +PQ P + GT+R Y
Sbjct: 503 PVYGGRLTKPAKGKLF-------------------YVPQRPYMTLGTLRDQIIYPDSSED 543
Query: 1086 QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNW----SMGQRQLFCLGRAL 1137
+D+++ ++L L + E+E G ++ +W S G++Q + R
Sbjct: 544 MKRRGLSDKDLEQILDNVQLTHIL-EREGGWSAV-----QDWMDVLSGGEKQRIAMARLF 597
Query: 1138 LRRSRILVLDEATASIDNATDM---ILQKTIRAEFADCTVITVAHR 1180
+ + +LDE T+++ + D+ + + T+ +V+HR
Sbjct: 598 YHKPQFAILDECTSAV--SVDVEGYMYRLCREFGI---TLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNS 691
K + +ISL V+ G+ G G+GK+T + ILG + G I +
Sbjct: 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDG 61
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-04
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 625 NHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
+ I++ S S+ + +ISL+++ G+ V + G G GK+TLL I G +
Sbjct: 3 KPALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 685 GTILQN 690
G IL +
Sbjct: 60 GEILLD 65
|
Length = 352 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-04
Identities = 57/260 (21%), Positives = 106/260 (40%), Gaps = 48/260 (18%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL--VEPAGGKIL-------------- 1045
VLK IS T E G +GI+GR+G+GK+ L+ L + EP G+I+
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 1046 -------------------VDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQ 1086
VD ++S +R R I+ Q G LD + +
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTV-LDNVLE 133
Query: 1087 HTDQEIWEVLAKCHLGEAVRE-KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV 1145
++ +E K +G AV + L + + S G++Q L R L + + +
Sbjct: 134 ALEEIGYE--GKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFL 191
Query: 1146 LDEATASIDNATDMILQKTIR--AEFADCTVITVAHRIPTVMD--CTMVLAISDGKLAEY 1201
DE T ++D T ++ + + + +++ +H P V++ + + +G++ E
Sbjct: 192 ADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH-WPEVIEDLSDKAIWLENGEIKEE 250
Query: 1202 DEPMKLMKREGSLFGQLVRE 1221
P +++ F + V E
Sbjct: 251 GTPDEVVAV----FMEGVSE 266
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
+I +K+ +F ++E K T+ ++S V+ G+ ++I G GSGKST + I G + G
Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 687 IL 688
I+
Sbjct: 64 II 65
|
Length = 279 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 4e-04
Identities = 65/281 (23%), Positives = 107/281 (38%), Gaps = 39/281 (13%)
Query: 438 LCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTKLM----VAQDE--RLKA 491
+ IAL I F + ++ + IT+ Q A+DE
Sbjct: 133 IAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNE 192
Query: 492 CSEALV-NMKVLKLYA----WETHFK-----NAIEILRNVEYKWLSAVQLRKAYNTFLFW 541
+ A+ K LK++ H N I L +E A + + LF+
Sbjct: 193 HTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAA---ENFGQLLFF 249
Query: 542 SSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRI 601
+L+ A F A F ++ A+ + FV L ++ P+ ++ + + QA +A R+
Sbjct: 250 ---LLIGCALFAAAMFASID--AAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRL 304
Query: 602 VNFLEA-----PELQSMNIRQKGNIENVNH-----VISIKSASFSWE--ESSSKPTMRNI 649
+F E PEL+ + N+ + H I +K + + E S + I
Sbjct: 305 ADFGERFNEPEPELE---LSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPI 361
Query: 650 SLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690
L + G V I GE G GKSTL G +G IL +
Sbjct: 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLD 402
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 4e-04
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+++S EVR G+ V I G G+G+S L+ AI G G IL
Sbjct: 275 KDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRIL 316
|
Length = 501 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
K + NIS EV PG+ + G G+GK+T ILG + T+G I
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59
|
Length = 300 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 37/220 (16%)
Query: 1006 ISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL------ 1059
+S G +GIVG +GSGK+TL+G L + P G ++L L+ L
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81
Query: 1060 ---RSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQ--EIWEVLAKC---HLGEAVREKENG 1111
R+ +G + Q+P D L I E L H G ++
Sbjct: 82 RLMRTEWGFVHQNP----------RDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDW 131
Query: 1112 LDSLVVEDG------SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI 1165
L+ + ++ +S G +Q + R L+ R R++ +DE T +D + L +
Sbjct: 132 LEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 191
Query: 1166 RAEFAD--CTVITVAHRIPTV---MDCTMVLAISDGKLAE 1200
R D VI V H + +V+ G++ E
Sbjct: 192 RGLVRDLGLAVIIVTHDLGVARLLAQRLLVM--QQGRVVE 229
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-04
Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 21/185 (11%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VL+ ++ + G + +VG++G+GKTTL R++ G G R
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTL----LRMIL---GAQK-------GRGEEKYRP 443
Query: 1062 RFGIIPQDPTLFNGTVRYNLDP-LSQHTDQE-IWEVLAKCHLGEAVREKENGLDS--LVV 1117
G + + + +P + T E + + + GL L
Sbjct: 444 DSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEIL-NRAGLSDAVLYR 502
Query: 1118 EDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR--AEFADCTVI 1175
S S GQ++ L + L R +L++DE A +D T + + + I A A T+I
Sbjct: 503 RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562
Query: 1176 TVAHR 1180
V HR
Sbjct: 563 VVTHR 567
|
Length = 593 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-04
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 591 FIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNIS 650
F Q +A R+ + L +P + + I+ ++ F + S + N++
Sbjct: 421 FQQTGIALERLGDILNSPTEPRSA--GLAALPELRGAITFENIRFRYAPDSP-EVLSNLN 477
Query: 651 LEVRPGQKVAICGEVGSGKSTL 672
L+++PG+ + I G GSGKSTL
Sbjct: 478 LDIKPGEFIGIVGPSGSGKSTL 499
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 11/78 (14%)
Query: 613 MNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTL 672
M+I+ IEN+ H I ++ F K + N+++E+ G+ V + G GSGKSTL
Sbjct: 1 MSIK----IENLTH-IYMEGTPFE------KKALDNVNIEIEDGEFVGLIGHTGSGKSTL 49
Query: 673 LAAILGEVPHTQGTILQN 690
+ + G + T G I+ +
Sbjct: 50 IQHLNGLLKPTSGKIIID 67
|
Length = 287 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-04
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690
+SL++RPG+ +AI G G+GKSTLL A+ GE+ G + N
Sbjct: 19 GVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLN 61
|
Length = 259 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 22/67 (32%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
++S+++ S S+ + + ++SLE++PG+ + + G G+GKSTL+ +LG V +G
Sbjct: 4 LVSLENVSVSF---GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV 60
Query: 687 ILQNSWL 693
I +N L
Sbjct: 61 IKRNGKL 67
|
Length = 251 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 638 EESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+++ + ++SL+VR G+ I G GSGKSTLL I + T G +L
Sbjct: 32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVL 82
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP 681
+R++SL + PG+ A+ G G+GKSTLL A+ G++
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT 52
|
Length = 272 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
++ +S +R GQ +AI GE GSGKSTL + G + T G +L
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELL 71
|
Length = 267 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-04
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH 682
++ IS ++ G+ +A+ GE GSGKS +ILG +P
Sbjct: 23 VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS 62
|
Length = 534 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 7e-04
Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 650 SLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTILQN 690
L V G+ VAI G G+GKSTLL I G E P G IL N
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP-ASGEILIN 59
|
Length = 231 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 24/43 (55%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-LGEVPHTQGTI 687
+ I LEV+PG+ VAI G GSGK+TLL I L E P GTI
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP-EAGTI 60
|
Length = 250 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 1013 GHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL---------RSRF 1063
G +GIVG +GSGKTTL+ AL + P G++ D L+ L R+ +
Sbjct: 32 GEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEW 91
Query: 1064 GIIPQDP 1070
G + Q P
Sbjct: 92 GFVHQHP 98
|
Length = 258 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-04
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 621 IENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTL 672
IE I ++ +F++ P +RNI+ ++ G+ VA+ G GSGKST+
Sbjct: 335 IERAKGDIEFRNVTFTYPGKE-VPALRNINFKIPAGKTVALVGRSGSGKSTI 385
|
Length = 582 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 620 NIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE 679
+ +V H ++ P + N+SL + G+ V + G G GKSTL +LG
Sbjct: 4 EVRDVTHTY--RTGGLFGA-KQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60
Query: 680 VPHTQGTI 687
QGT+
Sbjct: 61 EKPAQGTV 68
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 8e-04
Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 1004 KGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS--------KLG 1055
+ IS + G +G G GSG+T L+ LF + + AGG+I ++G DIS K G
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 1056 L---HDLRSRFGIIPQ---------DPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGE 1103
+ + R G P +L +G + + + +Q E
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRT---------AE 390
Query: 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQK 1163
RE V ++ + S G +Q + + L +++ DE T ID + K
Sbjct: 391 NQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK 450
Query: 1164 TIRAEFAD--CTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200
+R + AD ++ V+ +P ++ C + +G+L +
Sbjct: 451 VMR-QLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.001
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 640 SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ + ++++S V GQ+V + G GSGKSTLL+A+L + T+G I
Sbjct: 1229 EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEI 1275
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
P + N SL ++PGQ+VA+ G GSGKST+ + G G IL
Sbjct: 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 627 VISIKSASFSWEESSSK-PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQ 684
+I +K+ S + ++ K ++++SL V G+ I G G+GKSTL+ I G E P T
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP-TS 59
Query: 685 GTIL 688
G++L
Sbjct: 60 GSVL 63
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I ++ + + K + N++LE+ G+ + + G GSGK+T + I + T G I
Sbjct: 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 688 L 688
Sbjct: 59 F 59
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+ ++S V PG+ + G G+GK+TL+ I G+ +G +L
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVL 63
|
Length = 249 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
++SLEVRPG+ V + G G+GK+TL I G + GT++
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVI 62
|
Length = 250 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 22/52 (42%), Positives = 27/52 (51%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANV 697
+ +++LEV G VA+ G GSGKSTLL I G G I N A V
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV 67
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 640 SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTI 687
+ + N+SL ++ G+ VA+ G G GKSTL ++G E P +QG +
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP-SQGNV 69
|
Length = 268 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 623 NVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH 682
NV+H+ S S+ E + + ++SL + G+ V + G G GK+TLL I G V
Sbjct: 5 NVSHL----SLSY---EGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP 57
Query: 683 TQGTILQN 690
++G+I N
Sbjct: 58 SRGSIQLN 65
|
Length = 259 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALF--RLVEPAGGKI 1044
I DL + D +LKG++ T + G I+G GSGK+TL + E G I
Sbjct: 2 KIKDLHVSVE-DKE-ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI 59
Query: 1045 LVDGIDISKLGLHDLRSRFGI 1065
L G D+ +L D R+R G+
Sbjct: 60 LFKGQDLLEL-EPDERARAGL 79
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 46/201 (22%), Positives = 74/201 (36%), Gaps = 44/201 (21%)
Query: 998 DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALF-RLVEPAG-------GKILVDGI 1049
+L+ +S E G ++GR G+GK+TL+ AL L G + ++G
Sbjct: 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE 71
Query: 1050 DISKLGLHDLRSRFGIIPQ----------DPTLFNGTVRY----NLDPLSQHTDQEIWEV 1095
++ + L ++PQ + G RY L+ + W+
Sbjct: 72 PLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLG--RYPHARRAGALTHRDGEIAWQA 129
Query: 1096 LAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL---------LRRSRILVL 1146
LA G +LV D + S G+ R L + R L+L
Sbjct: 130 LALA-----------GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLL 178
Query: 1147 DEATASIDNATDMILQKTIRA 1167
DE TA++D A L T+R
Sbjct: 179 DEPTAALDLAHQHRLLDTVRR 199
|
Length = 272 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI-LQNSWLAA--NVENPNVST 704
N + + PGQKV + G+ G GKSTLLA + E+ G+ +W A N E P +
Sbjct: 19 NATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQ 78
|
Length = 638 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 20/204 (9%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062
L IS G IG+VG GSGK+TL + + P GK+ +G ++S + +
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-EVSVIAISA---- 94
Query: 1063 FGIIPQDPTLFNGTVRYNLDPLSQHTDQEIW-EVLAKCHLGEAVREKENGLDSLVVEDGS 1121
G+ Q + N + + + + +++ LGE + +
Sbjct: 95 -GLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGE-----------FIYQPVK 142
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA-TDMILQKTIRAEFADCTVITVAHR 1180
+S G R + ILV+DEA + D L K + + T+ V+H
Sbjct: 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN 202
Query: 1181 IPTVMD-CTMVLAISDGKLAEYDE 1203
+ V CT + I GKL +Y E
Sbjct: 203 LGQVRQFCTKIAWIEGGKLKDYGE 226
|
Length = 264 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 622 ENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP 681
ENV+++ +S K + NIS E+ G VA+ G GSGKSTL+ +
Sbjct: 6 ENVDYI-------YSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK 58
Query: 682 HTQGTI-LQNSWLAANVENPNVSTLR 706
+ GTI + + N N+ LR
Sbjct: 59 PSSGTITIAGYHITPETGNKNLKKLR 84
|
Length = 287 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVENPNVSTL 705
+ ++SL +R G+ + + G G+GK+TLL + G + ++G + + +V+ L
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV--------RIAGEDVNRL 69
Query: 706 R 706
R
Sbjct: 70 R 70
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 651 LEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
L G+ + + G G+GK+TLL AILG +P +GT+
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVK 38
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+IS + R GQ A+ GE G+GKSTLL + G G+IL
Sbjct: 22 DISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL 62
|
Length = 501 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.002
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 655 PGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
PG+ + I G GSGK+TL A+ E+ G ++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVI 34
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 627 VISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
+I + +++++ +S + + +I LEV+ G A+ G GSGKSTLL + G + T+
Sbjct: 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 685 GTI 687
G +
Sbjct: 61 GKV 63
|
Length = 288 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 629 SIKS-ASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
IK + W+ + + ++L + G+ + + GE G GKST AI+G V T G +
Sbjct: 19 DIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEV 78
Query: 688 LQNSWL 693
WL
Sbjct: 79 A---WL 81
|
Length = 331 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+++++L V PG+ A+ GE G+GKSTL+ + G T+GTI
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62
|
Length = 510 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 27/163 (16%)
Query: 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI-LVDGIDISKLGLHDL 1059
++L I G +IG++GR G+GK+TLI L + P G+I L GI + H L
Sbjct: 326 IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQL 385
Query: 1060 RSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGL---DSLV 1116
+R + PL QH + LA L + +R+ G V
Sbjct: 386 E---------------FLRADESPL-QHLAR-----LAPQELEQKLRDYLGGFGFQGDKV 424
Query: 1117 VEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM 1159
E+ +S G++ L + +R +L+LDE T +D DM
Sbjct: 425 TEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD--LDM 465
|
Length = 638 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
+P + N+S +V PG+ I G G+GKSTLL+ I G+ H QG
Sbjct: 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD--HPQG 313
|
Length = 490 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 48/226 (21%), Positives = 84/226 (37%), Gaps = 42/226 (18%)
Query: 981 PVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFR----- 1035
P K ++ L Y LK I+ ++G +G GK+T + R
Sbjct: 12 PTQQKSEVNKLNFYY--GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLY 69
Query: 1036 ---------LVEPAGGKIL---VDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLD- 1082
++ P IL VD I++ R R ++ Q P F ++ N+
Sbjct: 70 PGNHYEGEIILHPDNVNILSPEVDPIEV--------RMRISMVFQKPNPFPKSIFENVAY 121
Query: 1083 -------PLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135
++ + L L + V+++ L N S GQ+Q C+ R
Sbjct: 122 GLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDL-------AFNLSGGQQQRLCIAR 174
Query: 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRI 1181
AL IL+ DE T+++D +++ I T++ V H +
Sbjct: 175 ALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNM 220
|
Length = 265 |
| >gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 653 VRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
V + + I G GSGK+TLL A+L +P +
Sbjct: 22 VEARKNILISGGTGSGKTTLLNALLAFIPPDE 53
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. Length = 186 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNS 691
+R++S E G+ + GE G+GK+TLL I + G + +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDG 63
|
Length = 245 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ +++ S W+E ++N+SLEV G I G GSGKS LL I G + G I
Sbjct: 1 LKVENLSKDWKEFK----LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKI 56
Query: 688 LQN 690
L N
Sbjct: 57 LLN 59
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTILQN 690
+++ISL V+ G+ V + G G GK+TLL I G E T GTI Q
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ-TAGTIYQG 64
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI-LQNSWLAANVENPNVSTLR 706
++++ + G VAI G GSGKSTLL + G + T GT+ + + A +N + LR
Sbjct: 25 DVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLR 84
|
Length = 290 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+S EVR G+ + + G G+GKSTLLA + G +P G+I
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQ 53
|
Length = 248 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.003
Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 50/224 (22%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG--GKILVDGIDISKLGLHDL 1059
+L G++ G + ++G +GSGK+TL+ AL ++ G IL + +K L
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL--- 139
Query: 1060 RSRFGIIPQDPTLF-NGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVR-----EKENGLD 1113
R G + QD L+ + TVR E L C L + EK +
Sbjct: 140 -KRTGFVTQDDILYPHLTVR---------------ETLVFCSLLRLPKSLTKQEKILVAE 183
Query: 1114 SLVVEDG--------------SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM 1159
S++ E G S G+R+ + +L +L+LDE T+ +D
Sbjct: 184 SVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAY 243
Query: 1160 ILQKTIRAEFAD--CTVITVAH----RIPTVMDCTMVLAISDGK 1197
L T+ A T++T H R+ + D +VL S+G+
Sbjct: 244 RLVLTL-GSLAQKGKTIVTSMHQPSSRVYQMFDSVLVL--SEGR 284
|
Length = 659 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.004
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
++SL V PG+ I G G+GK+T++ I G+ +G++L
Sbjct: 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVL 60
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILG 678
+ L V+ G+ +A+ GE GSGKSTLLA + G
Sbjct: 29 VELVVKRGETIALIGESGSGKSTLLAILAG 58
|
Length = 228 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 622 ENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP 681
++V +++ ++ SF+ ++ NISL V G+ AI G G GK+TLL I G++
Sbjct: 2 QSVANLVDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA 58
Query: 682 HTQGTIL 688
G IL
Sbjct: 59 PDHGEIL 65
|
Length = 269 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.004
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK-ILVDGIDISKLGLHDLR 1060
+LK IS +F G KIG++G G+GK+TL+ + + + G+ GI +
Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKV--------- 72
Query: 1061 SRFGIIPQDPTLFNG-TVRYN 1080
G +PQ+P L TVR N
Sbjct: 73 ---GYLPQEPQLDPEKTVREN 90
|
Length = 556 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1232 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.98 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.98 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.98 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.98 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.98 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.98 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.97 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.97 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.97 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.97 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.97 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.96 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.96 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.96 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.96 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.96 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.96 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.95 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.95 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.95 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.95 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.95 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.95 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.94 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.94 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.94 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.94 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.93 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.93 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.93 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.93 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.93 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.92 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.92 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.92 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.91 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.9 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.9 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.9 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.9 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.9 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.89 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.88 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.87 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.87 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.87 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.87 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.86 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.86 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.86 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.85 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.77 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.76 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.75 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.75 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.75 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.73 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.73 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.72 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.71 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.69 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.68 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.68 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.68 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.64 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.63 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.61 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.6 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.56 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.53 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.52 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.52 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.52 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.52 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.52 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.51 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.47 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.42 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.42 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.41 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.39 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.38 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.38 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.37 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.37 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.31 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.29 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.28 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.28 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.28 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.26 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.26 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.24 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.23 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.22 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.15 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.15 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.14 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.13 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.12 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.12 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.12 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.11 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.11 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.1 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.1 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.1 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.1 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.1 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.09 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.09 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.08 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.08 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.08 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.08 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.08 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.08 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.08 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.08 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.07 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.07 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.07 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.07 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.07 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.07 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-216 Score=2031.22 Aligned_cols=994 Identities=45% Similarity=0.734 Sum_probs=953.5
Q ss_pred CCCcccCch--hHHHHHHhHHHHHHhhccCCCCCCCCCCCChhccHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHH
Q 000904 232 ITGFAAAGF--FSRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSVLRTIIICYW 309 (1232)
Q Consensus 232 ~~p~~~a~~--~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~l~~~l~~~~~ 309 (1232)
+.|.+.++. +|++||||++|++++|||++|+.+|+|+|+++|+++.++++|++.|+++.++.+ ++|+++++++++||
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~-~~psl~~al~~~f~ 200 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSG-KKPSLLRALLRTFG 200 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhcccc-CCcHHHHHHHHHHH
Confidence 344555554 999999999999999999999999999999999999999999999999875433 67899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 310 RDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAA 389 (1232)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~ 389 (1232)
+++++.++++.+.+.+.|++|++++.+++|+++++.+.+.||+||+++|++.++++++.|||+|..+++|+|+|++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~ 280 (1381)
T KOG0054|consen 201 RTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISA 280 (1381)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999987778899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 390 IYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAP 469 (1232)
Q Consensus 390 iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~~~~~~~~~ 469 (1232)
||||+|++++.+++++++|+|+|+|++|++|+.++++++|.+|++|+|+++++++||..+|+++++|++++++++|+|.+
T Consensus 281 IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~ 360 (1381)
T KOG0054|consen 281 IYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSF 360 (1381)
T ss_pred HHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 000904 470 LAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPVLVST 549 (1232)
Q Consensus 470 ~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~~v~~ 549 (1232)
++++++++|++.|+.+|+|+|+|||+|+|||+|||||||++|.++|+++|++|++++||..+..+++.++++++|+++++
T Consensus 361 ~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~ 440 (1381)
T KOG0054|consen 361 LAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSV 440 (1381)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCCcceE
Q 000904 550 ATFGACY-FLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVI 628 (1232)
Q Consensus 550 ~tf~~~~-~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~I 628 (1232)
+||++|+ +.|+.+||++|||++|+||+|+.|+.++|..+++++||+||++|+++||..||.+++...+.+... .+..|
T Consensus 441 ~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~-~~~~i 519 (1381)
T KOG0054|consen 441 VTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEA-GENAI 519 (1381)
T ss_pred HHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCC-CCceE
Confidence 9999999 778999999999999999999999999999999999999999999999999999887765333322 56789
Q ss_pred EEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccc---------------------
Q 000904 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI--------------------- 687 (1232)
Q Consensus 629 ~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v--------------------- 687 (1232)
+++|++|+|+++++.|+|+||||+|++|+++||||++||||||||++|+||+++.+|++
T Consensus 520 ~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvr 599 (1381)
T KOG0054|consen 520 EIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVR 599 (1381)
T ss_pred EEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHH
Confidence 99999999998666679999999999999999999999999999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q 000904 688 -------------------------------------------------------------------------------- 687 (1232)
Q Consensus 688 -------------------------------------------------------------------------------- 687 (1232)
T Consensus 600 eNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg 679 (1381)
T KOG0054|consen 600 ENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVG 679 (1381)
T ss_pred HhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 000904 688 -------------------------------------------------------------------------------- 687 (1232)
Q Consensus 688 -------------------------------------------------------------------------------- 687 (1232)
T Consensus 680 ~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 759 (1381)
T KOG0054|consen 680 KHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEEASEKDLESG 759 (1381)
T ss_pred HHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhcccccccccccc
Confidence
Q ss_pred ---------------------------------------------------------------------------ccccc
Q 000904 688 ---------------------------------------------------------------------------LQNSW 692 (1232)
Q Consensus 688 ---------------------------------------------------------------------------~~~~~ 692 (1232)
.+++|
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~W 839 (1381)
T KOG0054|consen 760 ESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYW 839 (1381)
T ss_pred ccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568
Q ss_pred ccccccCCC------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHH
Q 000904 693 LAANVENPN------VSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLS 766 (1232)
Q Consensus 693 l~~~~~~~~------~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~iln 766 (1232)
++++.+... .+...++++|.++++++.++.+.+++.+...++++++.+|++|+++++|+||+|||+||.|||+|
T Consensus 840 Ls~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILN 919 (1381)
T KOG0054|consen 840 LSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILN 919 (1381)
T ss_pred HHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhh
Confidence 875443211 35678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 000904 767 RVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANH 846 (1232)
Q Consensus 767 R~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~ 846 (1232)
|||+|++.+|..+|..+..++...+++++.+++++++.|+++++.+|+.++++++++||.+++||++|+++.++||+++|
T Consensus 920 RFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh 999 (1381)
T KOG0054|consen 920 RFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSH 999 (1381)
T ss_pred hcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 000904 847 LAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMA 926 (1232)
Q Consensus 847 ~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~ 926 (1232)
++|+++|+.|||||+++++|.+++..++|.+.+++|....++||++.|+|+++++++..++++++..+.+..+||.+|++
T Consensus 1000 ~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLs 1079 (1381)
T KOG0054|consen 1000 FSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLS 1079 (1381)
T ss_pred HHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988887665789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceee
Q 000904 927 LSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGI 1006 (1232)
Q Consensus 927 l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~v 1006 (1232)
++|++++++.++|.+++.+++|+.|+||||+.+|+++|+|+|...+..+||++||..|+|+|+|+++||+|+.|+|||||
T Consensus 1080 lsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~i 1159 (1381)
T KOG0054|consen 1080 LSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGI 1159 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCc
Confidence 99999999999999999999999999999999999999997777766669999999999999999999999999999999
Q ss_pred eEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCC
Q 000904 1007 SCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQ 1086 (1232)
Q Consensus 1007 sl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~ 1086 (1232)
||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||+++++||||+++++|||||+||+||+|+||||+++
T Consensus 1160 s~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e 1239 (1381)
T KOG0054|consen 1160 SFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDE 1239 (1381)
T ss_pred eEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 000904 1087 HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR 1166 (1232)
Q Consensus 1087 ~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~ 1166 (1232)
|+|+|||+|||+|+|++.|+++|.|||+.|.|+|+|||.||||++||||||||++||||||||||++|++||..||++||
T Consensus 1240 ~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR 1319 (1381)
T KOG0054|consen 1240 YSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR 1319 (1381)
T ss_pred cCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHHhhhh
Q 000904 1167 AEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWSHLH 1227 (1232)
Q Consensus 1167 ~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~~~~~ 1227 (1232)
++|+|||||+||||++||+|||||+|||+|+|+|+|+|++|+++++|.|++++++++.++.
T Consensus 1320 ~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~~~~~ 1380 (1381)
T KOG0054|consen 1320 EEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAALSSR 1380 (1381)
T ss_pred HHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999887653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-166 Score=1665.37 Aligned_cols=1173 Identities=31% Similarity=0.531 Sum_probs=977.4
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000904 27 LLLSDPNSCINHALIICFDVLLLAMLLFNMIQKSSSKSLYIPVRFQ--RFTTLQKVAAVVNSCLGIAYLCLGTWILEEKL 104 (1232)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (1232)
+...+|| +++.++.++..+++++++...++...+......+..+ .......+..+||....+++...++.......
T Consensus 26 ~~~~~~c--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (1622)
T PLN03130 26 FGAYTPC--ATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISVLNLDG 103 (1622)
T ss_pred cCCCCcc--HHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 5558999 9999999999999888888777754221111112211 12235556666777777766555444321111
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHHHHHHhccC--CCCchhHHHHHHH---HHHHHHHHHHHHHHHhhcccccccchh
Q 000904 105 RKTHTALPLNWWLLVLFQGVTWLLVSLIVSLRGNH--LPRAPMRLLSVLS---FLFAGTVCVLSIFAAILSKDVTIKTAV 179 (1232)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1232)
..++.......++.+++..++++++..+...++.+ .+++.+++||++. .++.++ ........+... ..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~ 176 (1622)
T PLN03130 104 QTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLV---LSVKEYYSSFVL----YL 176 (1622)
T ss_pred ccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHH---HHHHHHHhcccc----ce
Confidence 11112222222455566666666666644444433 5899999999998 666555 111222211100 11
Q ss_pred hhhhHHHHHHHHH---HHhhccccccccccccccCcCCCCCCCc---CCCCCCCCCCCCCCcccCchhHHHHHHhHHHHH
Q 000904 180 DVLSFPGAILLLL---CAYKVFKHEETDVKIGENGLYAPLNGEA---NGLGKDHSAGHITGFAAAGFFSRLTFWWLNPLM 253 (1232)
Q Consensus 180 ~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~ 253 (1232)
.+..+.+.+.+.+ ..+...+... .+.|...+. ..+++...+.+++||++||+|||++|||+||++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~ 247 (1622)
T PLN03130 177 YISEVAAQVLFGILLLVYFPNLDPYP---------GYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLM 247 (1622)
T ss_pred ehhHHHHHHHHHHHHHHHHhcCCCCc---------ccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHH
Confidence 2222222222211 2221111100 111111000 001222334677999999999999999999999
Q ss_pred HhhccCCCCCCCCCCCChhccHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 254 KRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLL 333 (1232)
Q Consensus 254 ~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll 333 (1232)
++|||++|+.+|||+|+++|+++.++++|++.|+++.+ +++|+++++++++||+.++.+++++++..++.+++|+++
T Consensus 248 ~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll 324 (1622)
T PLN03130 248 QLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELK---KPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLL 324 (1622)
T ss_pred HHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998753 345899999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHH
Q 000904 334 NAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNY 413 (1232)
Q Consensus 334 ~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nl 413 (1232)
+.+++++.+++ ..+.||.++++++++.++.+++.++|++...++++++|+++...||+|.++++...+++.++|+++|+
T Consensus 325 ~~li~~v~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl 403 (1622)
T PLN03130 325 NLLLESMQNGE-PAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNL 403 (1622)
T ss_pred HHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHH
Confidence 99999997644 23568888888888888888888899999999999999999999999999999988888999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 414 VTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACS 493 (1232)
Q Consensus 414 ms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~ 493 (1232)
|++|++++.+++.++|.+|..|+++++++++||..+|+++++|++++++++|++.++++++++.+++.|+.+|+|++.++
T Consensus 404 ~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~ 483 (1622)
T PLN03130 404 MTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMN 483 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHH
Q 000904 494 EALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVAT 573 (1232)
Q Consensus 494 E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lal 573 (1232)
|+|+|||+||+|+||+.|.+++++.|++|+++.++..+..++..+++..+|.++++++|++|.+.++++|++.+|+++++
T Consensus 484 E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l 563 (1622)
T PLN03130 484 EVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSL 563 (1622)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888888888989999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEe
Q 000904 574 LRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEV 653 (1232)
Q Consensus 574 f~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i 653 (1232)
|++++.|+..+|..+..+.++++|++||++||+.+|...... .+... ....|+++|++|+|++++++++|+|+||+|
T Consensus 564 ~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~--~~~~~-~~~~I~~~nvsf~y~~~~~~~vL~~inl~i 640 (1622)
T PLN03130 564 FAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN--PPLEP-GLPAISIKNGYFSWDSKAERPTLSNINLDV 640 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC--CcccC-CCCceEEEeeEEEccCCCCCceeeceeEEe
Confidence 999999999999999999999999999999998876532211 11111 234799999999998655568999999999
Q ss_pred cCCCeEEEEeccccchHHHHHHHHhcCCCcc-ccc---------------------------------------------
Q 000904 654 RPGQKVAICGEVGSGKSTLLAAILGEVPHTQ-GTI--------------------------------------------- 687 (1232)
Q Consensus 654 ~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~-G~v--------------------------------------------- 687 (1232)
++||+++|||++|||||||+++|+|++++.+ |++
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~ 720 (1622)
T PLN03130 641 PVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQ 720 (1622)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcH
Confidence 9999999999999999999999999999999 776
Q ss_pred --------------------------------------------------------------------------------
Q 000904 688 -------------------------------------------------------------------------------- 687 (1232)
Q Consensus 688 -------------------------------------------------------------------------------- 687 (1232)
T Consensus 721 ~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l 800 (1622)
T PLN03130 721 HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQL 800 (1622)
T ss_pred HHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCH
Confidence
Q ss_pred -----------c----------------cc-cc----cccc-----------c-----------c--------------C
Q 000904 688 -----------L----------------QN-SW----LAAN-----------V-----------E--------------N 699 (1232)
Q Consensus 688 -----------~----------------~~-~~----l~~~-----------~-----------~--------------~ 699 (1232)
. .+ .+ .... . . .
T Consensus 801 ~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1622)
T PLN03130 801 HFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKK 880 (1622)
T ss_pred hHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhccccccccccccccccccccccccccccccccccccccccc
Confidence 0 00 00 0000 0 0 0
Q ss_pred C---------------C-c---------------------------------------------------chhHHHHHHH
Q 000904 700 P---------------N-V---------------------------------------------------STLRLIVVYL 712 (1232)
Q Consensus 700 ~---------------~-~---------------------------------------------------~~~~~~~v~~ 712 (1232)
. . + ....++++|+
T Consensus 881 ~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~ 960 (1622)
T PLN03130 881 SKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYA 960 (1622)
T ss_pred ccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHH
Confidence 0 0 0 0011222344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHH
Q 000904 713 LIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTN 792 (1232)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~ 792 (1232)
+++++..++.+.+.+.....+.+++.++|++++++++++|++|||++|+|+++||+++|++.+|..++..+..++...+.
T Consensus 961 ~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~ 1040 (1622)
T PLN03130 961 LLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQ 1040 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555556666677889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHH
Q 000904 793 AYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLD 872 (1232)
Q Consensus 793 ~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~ 872 (1232)
+++.+++++...|..+++.+|+.++++.++++|.+..|++++.+..+++|+++|+.|++.|+.|||+|+.+++|.+.+.+
T Consensus 1041 ~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~ 1120 (1622)
T PLN03130 1041 LLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGR 1120 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHH
Confidence 99999988888888778888888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 873 LIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGT-----FTPGFIGMALSYGLSLNSSLVMSIQNQCTL 947 (1232)
Q Consensus 873 ~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~-----~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~ 947 (1232)
.+|.+.+..+.....++|+..+++.++.+++...+.+.+.. .+. ..++.+|++++|++.+...+.++.+....+
T Consensus 1121 ~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~-~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~ 1199 (1622)
T PLN03130 1121 SMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQ-NGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLA 1199 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888999999999988877766555444432 221 226889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChH
Q 000904 948 ANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKT 1027 (1232)
Q Consensus 948 e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKS 1027 (1232)
++.+.++||+.+|.+.|+|++...++..+++.||..|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||||
T Consensus 1200 e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKS 1279 (1622)
T PLN03130 1200 ENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKS 1279 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHH
Confidence 99999999999999998887644344456678999999999999999998777899999999999999999999999999
Q ss_pred HHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHh
Q 000904 1028 TLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVRE 1107 (1232)
Q Consensus 1028 TLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~ 1107 (1232)
||+++|+|+++|++|+|.|||+||++++++++|++|++|||||.||+||||+||||+++++|+|+|+||++++++++|.+
T Consensus 1280 TLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~ 1359 (1622)
T PLN03130 1280 SMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRR 1359 (1622)
T ss_pred HHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhc
Q 000904 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDC 1187 (1232)
Q Consensus 1108 ~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~ 1187 (1232)
+|.||||.|+|+|.|||||||||+||||||+|+|+|||||||||+||.+||+.||++|++.+++||+|+||||++|+++|
T Consensus 1360 lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~ 1439 (1622)
T PLN03130 1360 NSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1439 (1622)
T ss_pred CccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHHhh
Q 000904 1188 TMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWSH 1225 (1232)
Q Consensus 1188 DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~~~ 1225 (1232)
|||+|||+|+|+|+|+|++|+++++|.|++|+++++..
T Consensus 1440 DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~~ 1477 (1622)
T PLN03130 1440 DRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAA 1477 (1622)
T ss_pred CEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcChh
Confidence 99999999999999999999998789999999988864
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-162 Score=1632.06 Aligned_cols=1089 Identities=32% Similarity=0.557 Sum_probs=935.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccC--CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhhhHHHHHHHH
Q 000904 114 NWWLLVLFQGVTWLLVSLIVSLRGNH--LPRAPMRLLSVLSFLFAGTVCVLSIFAAILSKDVTIKTAVDVLSFPGAILLL 191 (1232)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 191 (1232)
.....+++..++|++++++...++++ +.|..+.+||++..++.+..+++........... . ..+....+...+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 176 (1522)
T TIGR00957 99 VFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAI-V-DPFRDTTFYIYFALV 176 (1522)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhccccc-c-cceehhhHHHHHHHH
Confidence 33555677778887777666666554 5788999999999999888887664321111000 0 011011111111111
Q ss_pred HHHhhccccccccccccccCcCCCCCCCcCCCCCCCCCCCCCCcccCchhHHHHHHhHHHHHHhhccCCCCCCCCCCCCh
Q 000904 192 LCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKDHSAGHITGFAAAGFFSRLTFWWLNPLMKRGREKTLGDEDIPDLRK 271 (1232)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~ 271 (1232)
...+..... . ...|+..+. .....++||++||++||++|||+||++++|||++|+.+|||++++
T Consensus 177 ~~~~~~~~~-~---------~~~~~~~~~------~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~ 240 (1522)
T TIGR00957 177 LSQLVLSCF-S---------DKSPLFSET------NHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNK 240 (1522)
T ss_pred HHHHHHHhh-c---------CCCCccccc------cccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCH
Confidence 111111100 0 112333210 111346899999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHHhhhc--------------------------------------CCCCCchHHHHHHHHHHHHHH
Q 000904 272 AEQAESCYFQFLDQLNKQKQA--------------------------------------EPSSQPSVLRTIIICYWRDIF 313 (1232)
Q Consensus 272 ~~~~~~~~~~f~~~w~~~~~~--------------------------------------~~~~~~~l~~~l~~~~~~~~~ 313 (1232)
+++++.++++|++.|+++.++ ++.++++|+++++++||+.++
T Consensus 241 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l 320 (1522)
T TIGR00957 241 EDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFL 320 (1522)
T ss_pred hHhHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHhHHHH
Confidence 999999999999999876321 012357899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 314 MSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKK 393 (1232)
Q Consensus 314 ~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~iy~K 393 (1232)
.+++++++.+++.+++|++++.+++|+.+++.+.+.||+++++++++.++.+++.++|+|...++|+++|+++.+.||+|
T Consensus 321 ~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K 400 (1522)
T TIGR00957 321 MSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRK 400 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999976654556799999999999999999999999999999999999999999999
Q ss_pred HhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 394 QLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKL 473 (1232)
Q Consensus 394 ~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~~~~~~~~~~~~~ 473 (1232)
.|+++...+++.++|+++|+|++|++|+.++..++|.+|..|+|+++++++||..+|+++++|++++++++|++..+++.
T Consensus 401 ~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~ 480 (1522)
T TIGR00957 401 ALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMK 480 (1522)
T ss_pred HHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Q 000904 474 QHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPVLVSTATFG 553 (1232)
Q Consensus 474 ~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~~v~~~tf~ 553 (1232)
++++++++|+.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++..++..+..+...+.+..+|.++.+++|+
T Consensus 481 ~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 560 (1522)
T TIGR00957 481 TKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFA 560 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888899999999999
Q ss_pred HHHHh--CCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCCcceEEEE
Q 000904 554 ACYFL--NVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIK 631 (1232)
Q Consensus 554 ~~~~~--~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~I~i~ 631 (1232)
+|.+. ++.|+++.+|+++++|++++.|+..+|..+..+.++++|++||++||+.+|.++...............|+++
T Consensus 561 ~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 640 (1522)
T TIGR00957 561 VYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVH 640 (1522)
T ss_pred HHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEE
Confidence 99876 4679999999999999999999999999999999999999999999988765433211111100022479999
Q ss_pred eeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccc------------------------
Q 000904 632 SASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI------------------------ 687 (1232)
Q Consensus 632 ~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v------------------------ 687 (1232)
|++|+|+.+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|++
T Consensus 641 ~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI 719 (1522)
T TIGR00957 641 NATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENI 719 (1522)
T ss_pred EeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHh
Confidence 999999743 3589999999999999999999999999999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q 000904 688 -------------------------------------------------------------------------------- 687 (1232)
Q Consensus 688 -------------------------------------------------------------------------------- 687 (1232)
T Consensus 720 ~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i 799 (1522)
T TIGR00957 720 LFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 799 (1522)
T ss_pred hcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHH
Confidence
Q ss_pred ----------------------------------c----------------cc-cc---cc-c---------c-------
Q 000904 688 ----------------------------------L----------------QN-SW---LA-A---------N------- 696 (1232)
Q Consensus 688 ----------------------------------~----------------~~-~~---l~-~---------~------- 696 (1232)
. .+ .. +. . .
T Consensus 800 ~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 879 (1522)
T TIGR00957 800 FEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALV 879 (1522)
T ss_pred HHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhccccccccccccccccc
Confidence 0 00 00 00 0 0
Q ss_pred --c---------------------------------------------c--C-C-C---c-----------c--------
Q 000904 697 --V---------------------------------------------E--N-P-N---V-----------S-------- 703 (1232)
Q Consensus 697 --~---------------------------------------------~--~-~-~---~-----------~-------- 703 (1232)
. + . . . . +
T Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~ 959 (1522)
T TIGR00957 880 SGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYM 959 (1522)
T ss_pred cccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHH
Confidence 0 0 0 0 0 0 0
Q ss_pred --------------------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 704 --------------------------------------------TLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKS 739 (1232)
Q Consensus 704 --------------------------------------------~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 739 (1232)
...++.+|.+++++..++.+.+.+.....+.+++.+
T Consensus 960 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1522)
T TIGR00957 960 KAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRV 1039 (1522)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112233333333333444444555667889999
Q ss_pred HHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 740 LFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAI 819 (1232)
Q Consensus 740 l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~ 819 (1232)
+|++++++++++|++|||++|+|+++||+++|++.+|..++..+..++...+..++.+++++...|+++++.+|++++++
T Consensus 1040 l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~ 1119 (1522)
T TIGR00957 1040 LHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYF 1119 (1522)
T ss_pred HHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999899988888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 000904 820 RLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLS 899 (1232)
Q Consensus 820 ~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~ 899 (1232)
.++++|.+..|++++.+..+++|+++|+.|+++|+.+||+|+.+++|.+++.+.+|...++.+.....++|+..+++.++
T Consensus 1120 ~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1199 (1522)
T TIGR00957 1120 FVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVG 1199 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999987
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCC
Q 000904 900 ATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPN 979 (1232)
Q Consensus 900 ~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~ 979 (1232)
.+++..++.+.+. ..+.+++|.+|++++|++++..++.++++.+.++++.+.|+||+.+|.+.|+|++...+...++++
T Consensus 1200 ~~~~~~~~~~~v~-~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~ 1278 (1522)
T TIGR00957 1200 NCIVLFAALFAVI-SRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSG 1278 (1522)
T ss_pred HHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCC
Confidence 7655554444432 256789999999999999999999999999999999999999999999888776533333455678
Q ss_pred CCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh
Q 000904 980 WPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL 1059 (1232)
Q Consensus 980 wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L 1059 (1232)
||..|.|+|+||+|+|+++.++||+|+||+|++|||||||||||||||||+++|+|+++|++|+|.|||+||++++++++
T Consensus 1279 wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1279 WPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred CCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHH
Confidence 99999999999999998776789999999999999999999999999999999999999999999999999999999999
Q ss_pred hccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1060 RSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1060 R~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
|++|++|||||+||+||||+||||+++++|+|+|+||++|+++++|.++|+||||.|+|+|.|||||||||+||||||++
T Consensus 1359 R~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred HhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHH
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~ 1219 (1232)
+|+|||||||||+||.+||+.||++|++.+++||||+||||++++++||||+|||+|+|+|+|+|++|+++ +|.|++|+
T Consensus 1439 ~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~ 1517 (1522)
T TIGR00957 1439 KTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMA 1517 (1522)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 69999999
Q ss_pred HHHH
Q 000904 1220 REYW 1223 (1232)
Q Consensus 1220 ~~~~ 1223 (1232)
++.+
T Consensus 1518 ~~~g 1521 (1522)
T TIGR00957 1518 KDAG 1521 (1522)
T ss_pred HHcC
Confidence 9854
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-162 Score=1626.77 Aligned_cols=1174 Identities=30% Similarity=0.500 Sum_probs=974.7
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000904 27 LLLSDPNSCINHALIICFDVLLLAMLLFNMIQKSSSKSLYIPVRFQ--RFTTLQKVAAVVNSCLGIAYLCLGTWILEEKL 104 (1232)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (1232)
+...+|| +++.++..+..+++++++...++...+++....+..+ .......+..+|+....+++...+..... ..
T Consensus 26 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 102 (1495)
T PLN03232 26 FGAYTPC--AIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEPVLRLVMGISLFD-MD 102 (1495)
T ss_pred cCCCCcc--HHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cc
Confidence 4458999 9999999999888888887777654311111112111 11234455666666666665444333311 11
Q ss_pred hc-cCCCcchhHHHHHHHHHHHHHHHHHHHHHhccC--CCCchhHHHHHHH---HHHHHHHHHHHHHHHhhcccccccch
Q 000904 105 RK-THTALPLNWWLLVLFQGVTWLLVSLIVSLRGNH--LPRAPMRLLSVLS---FLFAGTVCVLSIFAAILSKDVTIKTA 178 (1232)
Q Consensus 105 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1232)
.. ++.......++.+++..+++.++..+...++.+ .+++.+++||++. .++.++ ........+... .
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~ 175 (1495)
T PLN03232 103 EETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLV---LPLKNSINRTAL----Y 175 (1495)
T ss_pred cccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHHH---HHHHHHHhcccc----c
Confidence 11 111222222555677777777766655444443 5899999999998 666555 111111211100 1
Q ss_pred hhhhhHHHHHHHHHHHhhccccccccccccccCcCC----CCCCCcCCCCCCCCCCCCCCcccCchhHHHHHHhHHHHHH
Q 000904 179 VDVLSFPGAILLLLCAYKVFKHEETDVKIGENGLYA----PLNGEANGLGKDHSAGHITGFAAAGFFSRLTFWWLNPLMK 254 (1232)
Q Consensus 179 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~ 254 (1232)
..+..+...+.+.+..+...++..+.+ .+. +... ...++..+.+.+++||++||+|||+||+|+||+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~pl~~ 248 (1495)
T PLN03232 176 LCISSRCCQALFGILLLVYIPELDPYP------GYHILNNESLD-NVEYDALRGGENICPERYASIFSRIYFSWMTPLMQ 248 (1495)
T ss_pred eehhHHHHHHHHHHHHHHhcccCCCCC------ccccccccccc-ccccccccccCCCCccccCCHHHHHHHHHHHHHHH
Confidence 122222222221111111111111100 111 0010 00011223346789999999999999999999999
Q ss_pred hhccCCCCCCCCCCCChhccHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 255 RGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLN 334 (1232)
Q Consensus 255 ~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~ 334 (1232)
+|||++|+.+|||+|+++|+++.++++|++.|+++.+ +++++++++++++|++.++.+++++++.+++.+++|++++
T Consensus 249 ~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~ 325 (1495)
T PLN03232 249 LGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESR---RPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILS 325 (1495)
T ss_pred HHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhhc---cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987743 3468999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHH
Q 000904 335 AFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYV 414 (1232)
Q Consensus 335 ~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlm 414 (1232)
.+++++++++ ..+.||.++++++++.++.+++.++|++...+++.++|+.+...+|+|.++++....++.++|+++|+|
T Consensus 326 ~li~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~l 404 (1495)
T PLN03232 326 HLLQSMQEGD-PAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMI 404 (1495)
T ss_pred HHHHHHhcCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHH
Confidence 9999997654 345688899999999999999999999999999999999999999999999999888888999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 415 TVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSE 494 (1232)
Q Consensus 415 s~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E 494 (1232)
++|++++.++..++|.+|..|++++++++++|..+|+++++|++++++++|++.++++++.+.+++.|+.+|+|.+.++|
T Consensus 405 s~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E 484 (1495)
T PLN03232 405 TTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINE 484 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHH
Q 000904 495 ALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATL 574 (1232)
Q Consensus 495 ~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf 574 (1232)
+++|||+||+|+||+.|.+++++.|++|++..+|..+..+...+++...|.++++++|++|.+.++++|++.+|+++++|
T Consensus 485 ~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~ 564 (1495)
T PLN03232 485 ILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLF 564 (1495)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888888889888899999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEec
Q 000904 575 RLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVR 654 (1232)
Q Consensus 575 ~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~ 654 (1232)
+.++.|+..+|..+..+.++++|++||++||+.+|...... .+... ....|+++|++|+|+.++++|+|+|+||+|+
T Consensus 565 ~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~~~-~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~ 641 (1495)
T PLN03232 565 AVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN--PPLQP-GAPAISIKNGYFSWDSKTSKPTLSDINLEIP 641 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--CCcCC-CCCcEEEEeeEEEcCCCCCCceeeeeEEEEc
Confidence 99999999999999999999999999999998765322110 11111 2347999999999986545689999999999
Q ss_pred CCCeEEEEeccccchHHHHHHHHhcCCCccccc-----------------------------------------------
Q 000904 655 PGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI----------------------------------------------- 687 (1232)
Q Consensus 655 ~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v----------------------------------------------- 687 (1232)
+||+++|||++|||||||+++|+||++|.+|.+
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~ 721 (1495)
T PLN03232 642 VGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQH 721 (1495)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHH
Confidence 999999999999999999999999999998864
Q ss_pred --------------------------------------------------------------------------------
Q 000904 688 -------------------------------------------------------------------------------- 687 (1232)
Q Consensus 688 -------------------------------------------------------------------------------- 687 (1232)
T Consensus 722 di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~ 801 (1495)
T PLN03232 722 DLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLH 801 (1495)
T ss_pred HHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChh
Confidence
Q ss_pred -------------------c-------cc---------------------------------------------------
Q 000904 688 -------------------L-------QN--------------------------------------------------- 690 (1232)
Q Consensus 688 -------------------~-------~~--------------------------------------------------- 690 (1232)
. .+
T Consensus 802 ~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (1495)
T PLN03232 802 FLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRG 881 (1495)
T ss_pred hHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhcccccccccccccccccccccccccccccccccccccccccc
Confidence 0 00
Q ss_pred ---------------------------------------------------ccccccccCC---CcchhHHHHHHHHHHH
Q 000904 691 ---------------------------------------------------SWLAANVENP---NVSTLRLIVVYLLIGF 716 (1232)
Q Consensus 691 ---------------------------------------------------~~l~~~~~~~---~~~~~~~~~v~~~l~~ 716 (1232)
+|+.++.+.. ......|+++|.++++
T Consensus 882 ~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~ 961 (1495)
T PLN03232 882 RSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGF 961 (1495)
T ss_pred hhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH
Confidence 0000000000 0001234455666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHH
Q 000904 717 VSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSN 796 (1232)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~ 796 (1232)
+..++.+.+.+.....+.+++.++|++++++++++|++|||++|+|+++||+++|++.+|..++..+..++...+..++.
T Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~ 1041 (1495)
T PLN03232 962 GQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLST 1041 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777777888999999999999999999999999999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHh
Q 000904 797 LGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDT 876 (1232)
Q Consensus 797 l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~ 876 (1232)
+++++...+...++.+|+.++++..+.+|.+..|++++.+..+++|+++|+.|++.|+.|||+|+.+++|.+.+.+..|.
T Consensus 1042 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~ 1121 (1495)
T PLN03232 1042 FALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDN 1121 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHH
Confidence 88888878777777788888888888899999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 877 NASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTF-----TPGFIGMALSYGLSLNSSLVMSIQNQCTLANYI 951 (1232)
Q Consensus 877 ~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~-----~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~ 951 (1232)
+.+..+.....+.|+..+++.++.+++...+.+.+.. .+.+ .++.+|++++|+.++...+.++++.+.++++.+
T Consensus 1122 ~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~ 1200 (1495)
T PLN03232 1122 NIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLR-NGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSL 1200 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888899999998887766555444443332 2222 256788899999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHH
Q 000904 952 ISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIG 1031 (1232)
Q Consensus 952 ~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~ 1031 (1232)
.++||+.+|.+.|+|++...+...++++||..|.|+|+||+|+|+++.++||+|+||+|++|||||||||||||||||++
T Consensus 1201 ~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~ 1280 (1495)
T PLN03232 1201 NSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLN 1280 (1495)
T ss_pred HHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999999888765432333456679999999999999999887778999999999999999999999999999999
Q ss_pred HHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccC
Q 000904 1032 ALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENG 1111 (1232)
Q Consensus 1032 ~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~g 1111 (1232)
+|+|+++|++|+|.|||+||++++++++|++|++|||||++|+||||+||||+++++|+|+|+||+++++++++.++|+|
T Consensus 1281 lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~G 1360 (1495)
T PLN03232 1281 ALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFG 1360 (1495)
T ss_pred HHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEE
Q 000904 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVL 1191 (1232)
Q Consensus 1112 Ldt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVl 1191 (1232)
|||.++|+|.|||||||||+||||||+++|+|||||||||+||.+||+.||++|++.+++||+|+||||++++++||||+
T Consensus 1361 Ldt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIl 1440 (1495)
T PLN03232 1361 LDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKIL 1440 (1495)
T ss_pred CCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChhHHHhhcCCHHHHHHHHHHhh
Q 000904 1192 AISDGKLAEYDEPMKLMKREGSLFGQLVREYWSH 1225 (1232)
Q Consensus 1192 VL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~~~ 1225 (1232)
|||+|+|+|+|+|+||+++++|.|++|+++++..
T Consensus 1441 VL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1474 (1495)
T PLN03232 1441 VLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPA 1474 (1495)
T ss_pred EEECCEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 9999999999999999998778999999988764
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-154 Score=1548.92 Aligned_cols=981 Identities=27% Similarity=0.473 Sum_probs=873.3
Q ss_pred CCCcccCchhHHHHHHhHHHHHHhhccCCCCCCCCCCCChhccHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHH
Q 000904 232 ITGFAAAGFFSRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSVLRTIIICYWRD 311 (1232)
Q Consensus 232 ~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~l~~~l~~~~~~~ 311 (1232)
.+||++||+|||++|||+||++++|||++|+.+|||+|+++++++.++++|++.|+++..+ +.++++|+++++++|++.
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~L~~~l~~~~~~~ 81 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELAS-AKKNPKLLNALRRCFFWR 81 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999999886532 245689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 312 IFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGF-KYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAI 390 (1232)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~-~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~i 390 (1232)
+++.++++++.+++.+++|++++.+++|++.++.. .+.||+++++++++.++++++.++++|...++++++|++++.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~i 161 (1490)
T TIGR01271 82 FVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLI 161 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999643322 35699999999999999999999999999999999999999999
Q ss_pred HHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 391 YKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPL 470 (1232)
Q Consensus 391 y~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~~~~~~~~~~ 470 (1232)
|+|.|+++....++.++|+++|+|++|++|+.+++.++|.+|..|+|+++++++||.++||++++|++++++++|++.++
T Consensus 162 y~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~ 241 (1490)
T TIGR01271 162 YKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACL 241 (1490)
T ss_pred HHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 000904 471 AKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPVLVSTA 550 (1232)
Q Consensus 471 ~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~~v~~~ 550 (1232)
++++.++|+++|+.+|+|++.++|+|++||+||+||||+.|.++++++|++|++.+++..+..+...++++..|.+++++
T Consensus 242 ~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1490)
T TIGR01271 242 GQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFL 321 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHhCCCcChhhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCCcceEE
Q 000904 551 TFGACYFLNVPLYASNVFTFVATLRLVQDPIR-VIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVIS 629 (1232)
Q Consensus 551 tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~-~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~I~ 629 (1232)
+|++|.+.++ ++++++||++++|++|+.|+. .+|..+..+.++++|++||++||+.+|.++... .. ....|+
T Consensus 322 ~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~--~~----~~~~i~ 394 (1490)
T TIGR01271 322 SVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY--NL----TTTEVE 394 (1490)
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc--cC----CCCceE
Confidence 9999988754 789999999999999999985 799999999999999999999999887654221 11 224699
Q ss_pred EEeeEEEecCC-------------------------------CCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHh
Q 000904 630 IKSASFSWEES-------------------------------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG 678 (1232)
Q Consensus 630 i~~~sfsw~~~-------------------------------~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilG 678 (1232)
++|++|+|+.. ..+++|+|+||+|++|++++|+|||||||||||++|+|
T Consensus 395 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G 474 (1490)
T TIGR01271 395 MVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG 474 (1490)
T ss_pred EecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 99999999631 01468999999999999999999999999999999999
Q ss_pred cCCCccccc-----------------------------------------------------------------------
Q 000904 679 EVPHTQGTI----------------------------------------------------------------------- 687 (1232)
Q Consensus 679 e~~~~~G~v----------------------------------------------------------------------- 687 (1232)
+++|.+|++
T Consensus 475 ~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqk 554 (1490)
T TIGR01271 475 ELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQR 554 (1490)
T ss_pred CCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHH
Confidence 999999987
Q ss_pred --------------------------------------------------------------------------------
Q 000904 688 -------------------------------------------------------------------------------- 687 (1232)
Q Consensus 688 -------------------------------------------------------------------------------- 687 (1232)
T Consensus 555 qRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 555 ARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence
Q ss_pred -cc-c----ccc--------------------------c--c-----c----------c-c-------------------
Q 000904 688 -LQ-N----SWL--------------------------A--A-----N----------V-E------------------- 698 (1232)
Q Consensus 688 -~~-~----~~l--------------------------~--~-----~----------~-~------------------- 698 (1232)
.. . .+. . . . . .
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1490)
T TIGR01271 635 QAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARK 714 (1490)
T ss_pred HhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 0 000 0 0 0 0 0
Q ss_pred ----------------C--------------C------------------------------------------------
Q 000904 699 ----------------N--------------P------------------------------------------------ 700 (1232)
Q Consensus 699 ----------------~--------------~------------------------------------------------ 700 (1232)
. +
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1490)
T TIGR01271 715 FSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQT 794 (1490)
T ss_pred cccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 0 0
Q ss_pred -------------------------------------------------------Ccch---hHHH---------HHHHH
Q 000904 701 -------------------------------------------------------NVST---LRLI---------VVYLL 713 (1232)
Q Consensus 701 -------------------------------------------------------~~~~---~~~~---------~v~~~ 713 (1232)
.... ..|+ .+++.
T Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~ 874 (1490)
T TIGR01271 795 SFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCL 874 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHH
Confidence 0000 0000 00000
Q ss_pred ---------------------------------------------------------HH--HHHHHHHHHHHHHHHHHHH
Q 000904 714 ---------------------------------------------------------IG--FVSTLFLMSRSLSSVVLGI 734 (1232)
Q Consensus 714 ---------------------------------------------------------l~--~~~~~~~~~~~~~~~~~~~ 734 (1232)
++ ....++.+.+.+.....+.
T Consensus 875 ~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1490)
T TIGR01271 875 VIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLL 954 (1490)
T ss_pred HHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0011111223333344566
Q ss_pred HHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 735 RSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPV 814 (1232)
Q Consensus 735 ~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~ 814 (1232)
+.+.++|.+++++++++|++||+++|.|+++||+++|++.+|..++..+..++...+.+++.++++++..|+++++.+|+
T Consensus 955 ~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l 1034 (1490)
T TIGR01271 955 TVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPV 1034 (1490)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 000904 815 IFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQR 894 (1232)
Q Consensus 815 ~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~r 894 (1232)
+++++.++++|.+..|++++.+..+++|+++|+.|++.|+.|||+|+.++++.+++.+.+|...+.++.....++|+..+
T Consensus 1035 ~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~ 1114 (1490)
T TIGR01271 1035 AVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMR 1114 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999998888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccC--
Q 000904 895 LETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVE-- 972 (1232)
Q Consensus 895 l~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~-- 972 (1232)
++.+....+....++.+. .....+|.+|++++|++.+...+.++++.+.++++.+.++||+.+|.+.|+|++...+
T Consensus 1115 ~~~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~ 1192 (1490)
T TIGR01271 1115 IDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGG 1192 (1490)
T ss_pred HHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc
Confidence 998776554443333322 1235678899999999999999999999999999999999999999988877542111
Q ss_pred ------------CCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC
Q 000904 973 ------------DNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA 1040 (1232)
Q Consensus 973 ------------~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~ 1040 (1232)
...+++.||..|.|+|+||+++|+++.+++|+|+||+|++|||||||||||||||||+++|+|+++ +
T Consensus 1193 ~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~ 1271 (1490)
T TIGR01271 1193 GKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T 1271 (1490)
T ss_pred cccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C
Confidence 112455799999999999999999877889999999999999999999999999999999999998 7
Q ss_pred ccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCC
Q 000904 1041 GGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120 (1232)
Q Consensus 1041 ~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G 1120 (1232)
+|+|.|||+||++++++++|++|+||||||+||+||||+||||+++++|+++|+||+++++++++.++|+||||.|+|+|
T Consensus 1272 ~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G 1351 (1490)
T TIGR01271 1272 EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351 (1490)
T ss_pred CcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEE
Q 000904 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAE 1200 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE 1200 (1232)
.|||||||||+||||||+++|+|||||||||+||.+||+.||++|++.+++||||+||||++++.+||||+||++|+|+|
T Consensus 1352 ~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHhhcCCHHHHHHHHHHh
Q 000904 1201 YDEPMKLMKREGSLFGQLVREYWS 1224 (1232)
Q Consensus 1201 ~g~p~~Ll~~~~~~f~~l~~~~~~ 1224 (1232)
+|+|++|++ ++|.|++|+++.+.
T Consensus 1432 ~g~p~~Ll~-~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1432 YDSIQKLLN-ETSLFKQAMSAADR 1454 (1490)
T ss_pred eCCHHHHHc-CCcHHHHHHHHhCh
Confidence 999999997 48999999998775
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-148 Score=1487.65 Aligned_cols=997 Identities=31% Similarity=0.485 Sum_probs=864.2
Q ss_pred CCCCCcccCchhHHHHHHhHHHHHHhhccCCCCCCCCCCCChhccHHHHHHHHHHHHHHhhhc-----------------
Q 000904 230 GHITGFAAAGFFSRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQA----------------- 292 (1232)
Q Consensus 230 ~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~----------------- 292 (1232)
..+.||++||||.++++.|++|++.+..|..|+.+|+|+-..+.|+-++..++.+..++...+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1560)
T PTZ00243 57 YTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLD 136 (1560)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecc
Confidence 456899999999999999999999999999999999999999999977776666544332110
Q ss_pred --------------------------------------------------------------------------------
Q 000904 293 -------------------------------------------------------------------------------- 292 (1232)
Q Consensus 293 -------------------------------------------------------------------------------- 292 (1232)
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1560)
T PTZ00243 137 ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSS 216 (1560)
T ss_pred ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecc
Confidence
Q ss_pred ----------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHH
Q 000904 293 ----------EPSSQPSVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKI 362 (1232)
Q Consensus 293 ----------~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~ 362 (1232)
..++..+|++++++++|+.++..++++++.+++.+++|++++.+++|+++++.....|++++++++++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~ 296 (1560)
T PTZ00243 217 TGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQL 296 (1560)
T ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Confidence 0023348999999999999999999999999999999999999999997655444458899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhc--cCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000904 363 LESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARL--MHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCI 440 (1232)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~R~~l~~~iy~K~L~ls~~~~~--~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~ 440 (1232)
+++++.++|+|...+.|+++|++|.+.||+|+++++..+.. +.++|+++|+|++|++++.+++.++|.+|.+|+|+++
T Consensus 297 ~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~ 376 (1560)
T PTZ00243 297 IQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLL 376 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987654 5689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHH
Q 000904 441 ALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRN 520 (1232)
Q Consensus 441 ~~~~L~~~lG~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~ 520 (1232)
++++||..+||++++|++++++++|++.+++|++.++++++|+++|+|++.++|++++||+||+||||+.|.++|++.|+
T Consensus 377 ~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~ 456 (1560)
T PTZ00243 377 SILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRA 456 (1560)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000904 521 VEYKWLSAVQLRKAYNTFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSR 600 (1232)
Q Consensus 521 ~E~~~l~k~~~~~~~~~~~~~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~R 600 (1232)
+|++.+++..+..++..++++++|.++++++|++|++.|++||++++||++++|++++.|+.++|..++.+.++++|++|
T Consensus 457 ~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~R 536 (1560)
T PTZ00243 457 RELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKR 536 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCcchh----c-----------------------------ccC------------------------CCCC
Q 000904 601 IVNFLEAPELQSMNI----R-----------------------------QKG------------------------NIEN 623 (1232)
Q Consensus 601 i~~fL~~~e~~~~~~----~-----------------------------~~~------------------------~~~~ 623 (1232)
|++||+.+|.+.... + ..+ ....
T Consensus 537 I~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1560)
T PTZ00243 537 ISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRH 616 (1560)
T ss_pred HHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence 999998776321000 0 000 0000
Q ss_pred CcceEEEEeeEEEecCC-------------------------------------CCCCceeeeEEEecCCCeEEEEeccc
Q 000904 624 VNHVISIKSASFSWEES-------------------------------------SSKPTMRNISLEVRPGQKVAICGEVG 666 (1232)
Q Consensus 624 ~~~~I~i~~~sfsw~~~-------------------------------------~~~~~L~~inl~i~~Ge~vaIvG~~G 666 (1232)
..+.+.++|++|+|+.. .++++|+|+||+|++|++++|+|+||
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nG 696 (1560)
T PTZ00243 617 PSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATG 696 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCC
Confidence 11346777877776421 13468999999999999999999999
Q ss_pred cchHHHHHHHHhcCCCccccc-----------------------------------------------------------
Q 000904 667 SGKSTLLAAILGEVPHTQGTI----------------------------------------------------------- 687 (1232)
Q Consensus 667 SGKSTLL~~ilGe~~~~~G~v----------------------------------------------------------- 687 (1232)
|||||||++|+|+++|.+|++
T Consensus 697 sGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 697 SGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred CcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 999999999999999999986
Q ss_pred -----------------------------------------------------------------------------c--
Q 000904 688 -----------------------------------------------------------------------------L-- 688 (1232)
Q Consensus 688 -----------------------------------------------------------------------------~-- 688 (1232)
.
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 0
Q ss_pred --------------cccc---ccc----cc-----------------------------cCC--C---------------
Q 000904 689 --------------QNSW---LAA----NV-----------------------------ENP--N--------------- 701 (1232)
Q Consensus 689 --------------~~~~---l~~----~~-----------------------------~~~--~--------------- 701 (1232)
...+ ... .. +.. .
T Consensus 857 G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 936 (1560)
T PTZ00243 857 GRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLM 936 (1560)
T ss_pred CEEEEecCHHHHHhChHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 0000 000 00 000 0
Q ss_pred ---------cchh---H----------------------------------------------HHHHHHHHHHHHHHHHH
Q 000904 702 ---------VSTL---R----------------------------------------------LIVVYLLIGFVSTLFLM 723 (1232)
Q Consensus 702 ---------~~~~---~----------------------------------------------~~~v~~~l~~~~~~~~~ 723 (1232)
.... . ++.+|.++.++..++..
T Consensus 937 ~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~~~~~~~ 1016 (1560)
T PTZ00243 937 TREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFSVP 1016 (1560)
T ss_pred hHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHHHHHH
Confidence 0000 0 00011111111111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000904 724 SRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVV 803 (1232)
Q Consensus 724 ~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~ 803 (1232)
++.+.....+.+.++.+|++++++++++|++|||++|.|+++||+++|++.+|..++..+..++...+.+++.+++++..
T Consensus 1017 l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~ 1096 (1560)
T PTZ00243 1017 LRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSAS 1096 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233455678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHH
Q 000904 804 TWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQ 883 (1232)
Q Consensus 804 ~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~ 883 (1232)
.|.++++.+|+.++++.+.++|.+..|++++....+++|+.+++.|++.|+.+||+|+.++.+.+++.+.+|...+..+.
T Consensus 1097 ~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~ 1176 (1560)
T PTZ00243 1097 QPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYL 1176 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888888899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000904 884 TFAANEWLIQRLETLSATVISSAAFCMV---LLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQY 960 (1232)
Q Consensus 884 ~~~~~~wl~~rl~~~~~~~~~~~~~~~~---~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~ 960 (1232)
....++|+..+++++..++....+++.+ ....+.+++|.++++++|+.++...+.++++.+.++++.+.++||+.+|
T Consensus 1177 ~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~ 1256 (1560)
T PTZ00243 1177 ENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYY 1256 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999887766544333322 2234457899999999999999999999999999999999999999999
Q ss_pred cc-CCCCCCcc-----------------------cCCCCCC---CCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCC
Q 000904 961 MH-VPSEAPEV-----------------------VEDNRPP---PNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGG 1013 (1232)
Q Consensus 961 ~~-~~~e~~~~-----------------------~~~~~~~---~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~G 1013 (1232)
.+ .|.|+... .+...++ +.||..|.|+|+||+|+|+++.++||+||||+|++|
T Consensus 1257 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~G 1336 (1560)
T PTZ00243 1257 TDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPR 1336 (1560)
T ss_pred HhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCC
Confidence 85 34332110 0011122 235567999999999999887778999999999999
Q ss_pred cEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHH
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIW 1093 (1232)
Q Consensus 1014 ekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~ 1093 (1232)
||||||||||||||||+++|+|+++|++|+|.|||+||+++++++||++|++|||||.||+||||+||||+++++|+|||
T Consensus 1337 ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~ 1416 (1560)
T PTZ00243 1337 EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVW 1416 (1560)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccC-CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCc
Q 000904 1094 EVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRR-SRILVLDEATASIDNATDMILQKTIRAEFADC 1172 (1232)
Q Consensus 1094 ~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~-~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~ 1172 (1232)
+||+++++++++.++|+||||.|+|+|.||||||||||||||||+++ |+|||||||||+||.+||+.||++|++.+++|
T Consensus 1417 ~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~ 1496 (1560)
T PTZ00243 1417 AALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAY 1496 (1560)
T ss_pred HHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999996 89999999999999999999999999999999
Q ss_pred EEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHHhhh
Q 000904 1173 TVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWSHL 1226 (1232)
Q Consensus 1173 TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~~~~ 1226 (1232)
|||+||||++++.+||+|+|||+|+|+|+|+|+||+++++|.|++|+++.+...
T Consensus 1497 TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~~~ 1550 (1560)
T PTZ00243 1497 TVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSE 1550 (1560)
T ss_pred EEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChhH
Confidence 999999999999999999999999999999999999987899999999887543
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-110 Score=1036.64 Aligned_cols=901 Identities=20% Similarity=0.278 Sum_probs=712.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC--C----cchHHH---HHHHHHHHHHHHHHHH
Q 000904 298 PSVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAG--F----KYEGYV---LAITLFVAKILESLSQ 368 (1232)
Q Consensus 298 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~--~----~~~g~~---l~~~~~~~~~~~~~~~ 368 (1232)
..+++..-+..+..+.++.+.++++.+..++.-++.+++++.+-.... . ...++. ++++++++.++ ..
T Consensus 16 ~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~---q~ 92 (1228)
T KOG0055|consen 16 FKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFI---QV 92 (1228)
T ss_pred HHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 456665555666667778888888888888777888888877754321 0 112222 23334444444 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHH
Q 000904 369 RQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-----FWFHQIWTTSVQLCIALI 443 (1232)
Q Consensus 369 ~~~~~~~~~~~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~-----~~~~~~w~~plqi~~~~~ 443 (1232)
.+|.+.+.|+..|+|..+..+|.||...+.+. +++|++++-|+.|+++|.|.+ .++|.+-.+..-++++
T Consensus 93 ~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~----~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~-- 166 (1228)
T KOG0055|consen 93 SCWMRTGERQTARIRSKYLKAILRQDIGWFDT----NSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIG-- 166 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccceeec----ccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 57999999999999999999999999998865 355999999999999998854 3444433332223333
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHH
Q 000904 444 ILFHAVGL-ATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVE 522 (1232)
Q Consensus 444 ~L~~~lG~-~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E 522 (1232)
...+| .+++++++.+++......+++.+.+...+.+++..+..++++|++.+||+|-.|+.|+...+|+.+.=+.-
T Consensus 167 ---F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~ 243 (1228)
T KOG0055|consen 167 ---FYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENA 243 (1228)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 33377 89999999999999999999999999999999999999999999999999999999999998887755544
Q ss_pred HHHHHHHHHHHHHHHHHH--hHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000904 523 YKWLSAVQLRKAYNTFLF--WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSR 600 (1232)
Q Consensus 523 ~~~l~k~~~~~~~~~~~~--~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~R 600 (1232)
.|...|..+..++...+. +.-......+|||..+++.+..|++++|+++...-+-...|.+..+.+..+.+|++|..+
T Consensus 244 ~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~ 323 (1228)
T KOG0055|consen 244 LKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYR 323 (1228)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHH
Confidence 444444444444332222 222234556788888878889999999999955555567888888899999999999999
Q ss_pred HHHHhCC-CCCCcchhcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhc
Q 000904 601 IVNFLEA-PELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 601 i~~fL~~-~e~~~~~~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe 679 (1232)
|.+.++. |++++...+...... .++.|+++|+.|+||++++.++|+|+||+|++|+.||+||+|||||||++++|.|.
T Consensus 324 I~~~i~~~~~i~~~~~~~~~~~~-~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rf 402 (1228)
T KOG0055|consen 324 IFETIDRKPSIDPYSKGGRVLSS-IKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARF 402 (1228)
T ss_pred HHHHhcCCCCCCcccccCCcccc-cccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 9999976 555554322212212 56899999999999999989999999999999999999999999999999999999
Q ss_pred CCCccccc------------------------------------------------------------------------
Q 000904 680 VPHTQGTI------------------------------------------------------------------------ 687 (1232)
Q Consensus 680 ~~~~~G~v------------------------------------------------------------------------ 687 (1232)
++|.+|+|
T Consensus 403 ydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~ 482 (1228)
T KOG0055|consen 403 YDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTL 482 (1228)
T ss_pred cCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhccc
Confidence 99999998
Q ss_pred --------------------------------------------------------------------------------
Q 000904 688 -------------------------------------------------------------------------------- 687 (1232)
Q Consensus 688 -------------------------------------------------------------------------------- 687 (1232)
T Consensus 483 vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~ 562 (1228)
T KOG0055|consen 483 VGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEE 562 (1228)
T ss_pred ccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEEC
Confidence
Q ss_pred ------------------------c-------c--c--------cccc-------------------------ccc-cCC
Q 000904 688 ------------------------L-------Q--N--------SWLA-------------------------ANV-ENP 700 (1232)
Q Consensus 688 ------------------------~-------~--~--------~~l~-------------------------~~~-~~~ 700 (1232)
. . + .+.. +.. ..+
T Consensus 563 G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 642 (1228)
T KOG0055|consen 563 GKIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEP 642 (1228)
T ss_pred CEEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCccccccccccccccccccc
Confidence 0 0 0 0000 000 000
Q ss_pred -------------------------------------------------------Cc-----chhHHHHHHHHHHHHHHH
Q 000904 701 -------------------------------------------------------NV-----STLRLIVVYLLIGFVSTL 720 (1232)
Q Consensus 701 -------------------------------------------------------~~-----~~~~~~~v~~~l~~~~~~ 720 (1232)
+. ....+..+|.+++++..+
T Consensus 643 ~~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i 722 (1228)
T KOG0055|consen 643 VSEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGI 722 (1228)
T ss_pred cccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 012366778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCC--CCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 000904 721 FLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDS--TPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLG 798 (1232)
Q Consensus 721 ~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~--~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~ 798 (1232)
+.++..+.+...|.+...++|.++++++++.++.|||. +. |++.+|+.+|...+...+...+..+++.+..++..++
T Consensus 723 ~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~ii 801 (1228)
T KOG0055|consen 723 TNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGII 801 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999996 55 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHH
Q 000904 799 VLAVVTWQVLFV---SIPVIFLAIRLQRYYFATAK-ELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLI 874 (1232)
Q Consensus 799 v~~~~~~~~~l~---~~p~~~l~~~~~~~~~~~~r-~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~ 874 (1232)
+.++..|++.++ ..|++++..+.+.+++.... +.+. ..........|++.+++||++|+.|++|++.+.+.+
T Consensus 802 iaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~----~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l 877 (1228)
T KOG0055|consen 802 IAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKK----AYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEEL 877 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHH
Confidence 999999998765 56888887777777665432 2222 112234567899999999999999999999998888
Q ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 875 DTNASPFFQTFAANEWLIQRLETLSATVISSAAFC----MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANY 950 (1232)
Q Consensus 875 d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~----~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~ 950 (1232)
+...+..+.. ..|.+....+-..++.+..++. ..+..+|.+++..+-..+.-...-...+........+....
T Consensus 878 ~~p~~~~~~~---~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka 954 (1228)
T KOG0055|consen 878 EKPRKSSFKR---GLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKA 954 (1228)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 8766654332 2333333333333332222221 33455777777665443332222223344455566778888
Q ss_pred HHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEec--CCCCccceeeeEEEeCCcEEEEECCCCCChHH
Q 000904 951 IISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYR--PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTT 1028 (1232)
Q Consensus 951 ~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~--~~~~~vL~~vsl~I~~GekvgIVGrtGSGKST 1028 (1232)
..|+.++.+.++.+++-+...+.... .-+.+|+|+|+||+|+|+ |+ .+||+|+|++|++|+++|+||+|||||||
T Consensus 955 ~~Aa~~iF~i~dr~~~i~~~~~~~~~--~~~~~G~I~~~~V~F~YPsRP~-~~Il~~l~l~i~~GqTvALVG~SGsGKST 1031 (1228)
T KOG0055|consen 955 KIAAGSIFEILDRKPTIDPDSTSGGK--LPNVKGDIEFRNVSFAYPTRPD-VPVLNNLSLSIRAGQTVALVGPSGSGKST 1031 (1228)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCc--cccceeEEEEeeeEeeCCCCCC-chhhcCCcEEecCCCEEEEECCCCCCHHH
Confidence 88999999988766532211111111 113579999999999995 43 36999999999999999999999999999
Q ss_pred HHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHh
Q 000904 1029 LIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVRE 1107 (1232)
Q Consensus 1029 Ll~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~ 1107 (1232)
++.+|.|+|+|++|+|.|||+||++++++.||++|++|.|||.||++||||||.... +.+++||.+|++.++.++||.+
T Consensus 1032 vI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~s 1111 (1228)
T KOG0055|consen 1032 VISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISS 1111 (1228)
T ss_pred HHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhc
Confidence 999999999999999999999999999999999999999999999999999998652 4699999999999999999999
Q ss_pred hccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhc
Q 000904 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDC 1187 (1232)
Q Consensus 1108 ~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~ 1187 (1232)
+|+||||.|||.|.+||||||||+|||||++|+||||+||||||+||.++|+.+|++|++...++|+|+|||||+||++|
T Consensus 1112 LP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqna 1191 (1228)
T KOG0055|consen 1112 LPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNA 1191 (1228)
T ss_pred CcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHH
Q 000904 1188 TMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1188 DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
|.|.|+++|+|+|.|+|++|++ ++|.|++|++...
T Consensus 1192 D~I~Vi~~G~VvE~GtH~~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1192 DVIAVLKNGKVVEQGTHDELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred CEEEEEECCEEEecccHHHHHh-CCCchHHHhhhcc
Confidence 9999999999999999999999 5899999998653
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-95 Score=968.77 Aligned_cols=917 Identities=18% Similarity=0.198 Sum_probs=659.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 299 SVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLI 378 (1232)
Q Consensus 299 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1232)
.+++...+.+++.++++.++.++..++.++.|++++.+++-+..++.-....+++++..++..++..+....+.+.+.++
T Consensus 49 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 128 (1466)
T PTZ00265 49 LPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKI 128 (1466)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666778889999999999999999999999999987642211111111122111222222333333444445555
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000904 379 GLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGL-ATIAA 456 (1232)
Q Consensus 379 ~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~-~~l~g 456 (1232)
..++|.. +|++.++++..-.+..++|+++|.++.|++.+.+.+ ..+..+...++.++.++++++. +.| .+++.
T Consensus 129 ~~~lR~~----~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~-~sw~Lalv~ 203 (1466)
T PTZ00265 129 LKTLKLE----FLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF-KNARLTLCI 203 (1466)
T ss_pred HHHHHHH----HHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Confidence 5555555 555555555554556678999999999999988865 3455555555666666555554 466 67777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 457 LVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1232)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~ 536 (1232)
++++++++.+..++.+++.+..++..+..++..+.+.|.+++||+||.|+-|+.+.++..+..+.-.+...|.....+..
T Consensus 204 l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~ 283 (1466)
T PTZ00265 204 TCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLH 283 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778878888889999988888888889999999999999999999999999999998876555544444444444443
Q ss_pred HHHHhHh--hHHHHHHHHHHHHHhCC--------CcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Q 000904 537 TFLFWSS--PVLVSTATFGACYFLNV--------PLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLE 606 (1232)
Q Consensus 537 ~~~~~~~--p~~v~~~tf~~~~~~~~--------~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~ 606 (1232)
..+.... -..+.+++||.+.+..+ .++++.+++.+....+...++..+.+.+..+.++++|.+||.+.++
T Consensus 284 ~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~ 363 (1466)
T PTZ00265 284 IGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIIN 363 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2222221 12344567888876643 5888988887655444455666666678999999999999999998
Q ss_pred CCCCCcchhcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccc
Q 000904 607 APELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686 (1232)
Q Consensus 607 ~~e~~~~~~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~ 686 (1232)
.++..+......... ....|+++|++|+|+.++++++|+|+||+|++||++||+|+||||||||+++|+|.++|++|+
T Consensus 364 ~~~~~~~~~~~~~~~--~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~ 441 (1466)
T PTZ00265 364 RKPLVENNDDGKKLK--DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGD 441 (1466)
T ss_pred CCCCCCCCCCCccCC--CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCe
Confidence 743221111111111 123699999999998654568999999999999999999999999999999999998886554
Q ss_pred c---------------------------------------cc--------------------------------------
Q 000904 687 I---------------------------------------LQ-------------------------------------- 689 (1232)
Q Consensus 687 v---------------------------------------~~-------------------------------------- 689 (1232)
| ..
T Consensus 442 I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1466)
T PTZ00265 442 IIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGD 521 (1466)
T ss_pred EEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccch
Confidence 4 00
Q ss_pred ---------------------c----------------------------------------------------------
Q 000904 690 ---------------------N---------------------------------------------------------- 690 (1232)
Q Consensus 690 ---------------------~---------------------------------------------------------- 690 (1232)
+
T Consensus 522 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~IL 601 (1466)
T PTZ00265 522 LNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKIL 601 (1466)
T ss_pred hhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 0
Q ss_pred ------------------------------------------------cccccc--------------------------
Q 000904 691 ------------------------------------------------SWLAAN-------------------------- 696 (1232)
Q Consensus 691 ------------------------------------------------~~l~~~-------------------------- 696 (1232)
..+...
T Consensus 602 lLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 681 (1466)
T PTZ00265 602 ILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKN 681 (1466)
T ss_pred EEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccc
Confidence 000000
Q ss_pred -----------------------------------------------------c--c--C--C------------Cc---
Q 000904 697 -----------------------------------------------------V--E--N--P------------NV--- 702 (1232)
Q Consensus 697 -----------------------------------------------------~--~--~--~------------~~--- 702 (1232)
. . . . ..
T Consensus 682 ~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (1466)
T PTZ00265 682 NKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPD 761 (1466)
T ss_pred ccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccccccccc
Confidence 0 0 0 0 00
Q ss_pred -----------------------c---------------------h---------hHHHHHH---HHH------------
Q 000904 703 -----------------------S---------------------T---------LRLIVVY---LLI------------ 714 (1232)
Q Consensus 703 -----------------------~---------------------~---------~~~~~v~---~~l------------ 714 (1232)
. . ..++.-| ..+
T Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (1466)
T PTZ00265 762 EMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVAGGLY 841 (1466)
T ss_pred cccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0000000 000
Q ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCC--
Q 000904 715 ----------------------------------GFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDS-- 758 (1232)
Q Consensus 715 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~-- 758 (1232)
+++..++.+++.+.....+.+...+++.++++++++.|++|||.
T Consensus 842 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~ 921 (1466)
T PTZ00265 842 PVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDK 921 (1466)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCC
Confidence 00111112222333344566777889999999999999999986
Q ss_pred CCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-
Q 000904 759 TPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFA--TAKELMRL- 835 (1232)
Q Consensus 759 ~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~--~~r~l~rl- 835 (1232)
+++|++++|+++|++.+...+...+..++...+.++..++++++.+|.+.++.+|+.++.........+ ..++..+.
T Consensus 922 ~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1466)
T PTZ00265 922 HAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKE 1001 (1466)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 889999999999999999888777888888888888888888999998877766554443322111111 11111111
Q ss_pred ------------hhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 000904 836 ------------NGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVI 903 (1232)
Q Consensus 836 ------------~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~ 903 (1232)
+..........+.|++.|+++||+|+.|+++.+++.+..+...+..........+.......+..+..
T Consensus 1002 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1081 (1466)
T PTZ00265 1002 INQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFIN 1081 (1466)
T ss_pred ccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11113345778899999999999999999999888877766544333222211111111112211111
Q ss_pred HHH-HHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCC-CCCCC
Q 000904 904 SSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRP-PPNWP 981 (1232)
Q Consensus 904 ~~~-~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~-~~~wp 981 (1232)
..+ .+...++..|.++.|.+..++.+.+.....+..+.....++.....+.+|+.+.++.+++.+.......+ +...+
T Consensus 1082 ~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~ 1161 (1466)
T PTZ00265 1082 SFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKND 1161 (1466)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCC
Confidence 111 1122334478888887766555544333445566677888899999999999998765432211111111 00113
Q ss_pred CcceEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC---------------------
Q 000904 982 VVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP--------------------- 1039 (1232)
Q Consensus 982 ~~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep--------------------- 1039 (1232)
..|.|+|+||+|+|+.. ..+||+|+||+|++||++||||+||||||||+++|.|+|+|
T Consensus 1162 ~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1162 IKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred CCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 45889999999999632 24699999999999999999999999999999999999999
Q ss_pred ---------------------------------CccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-
Q 000904 1040 ---------------------------------AGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS- 1085 (1232)
Q Consensus 1040 ---------------------------------~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~- 1085 (1232)
++|+|+|||+||+++++++||++|+||||||.||+|||||||....
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE 1321 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC
Confidence 6999999999999999999999999999999999999999998763
Q ss_pred CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHH
Q 000904 1086 QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI 1165 (1232)
Q Consensus 1086 ~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L 1165 (1232)
+.+|+||++|++.++++++|.++|+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||.+|++.|+++|
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc--CCcEEEEEecChhhhhhcCeEEEEeC----CEE-EEecChhHHHhhcCCHHHHHHHHH
Q 000904 1166 RAEF--ADCTVITVAHRIPTVMDCTMVLAISD----GKL-AEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1166 ~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~----G~v-vE~g~p~~Ll~~~~~~f~~l~~~~ 1222 (1232)
++.. +++|+|+||||++++++||+|+||++ |++ +|.|+|+||+++++|.|++|++..
T Consensus 1402 ~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 9863 68999999999999999999999999 995 599999999985579999999754
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-85 Score=777.68 Aligned_cols=510 Identities=26% Similarity=0.399 Sum_probs=432.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHH
Q 000904 708 IVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAV 787 (1232)
Q Consensus 708 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~ 787 (1232)
..+..++.+.++++...|...+.+.+.+...+++..+|++++++.++|||.+.+|++++|+++|...+...++..+...+
T Consensus 191 ~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~l 270 (716)
T KOG0058|consen 191 CTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGL 270 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 44556667778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchH
Q 000904 788 GATTNAYSNLGVLAVVTWQVLFV---SIPVIFL-AIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEE 863 (1232)
Q Consensus 788 ~~~~~~l~~l~v~~~~~~~~~l~---~~p~~~l-~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~ 863 (1232)
.+.++.++.++.|+..+|.+.++ .+|.+.+ ...+.+++.+.++ ....+.+...+...|.+.+++|+|+|+.|
T Consensus 271 R~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~----~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E 346 (716)
T KOG0058|consen 271 RNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSK----QTQDALARANQVAEEVLSAMRTVRSFAAE 346 (716)
T ss_pred HHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhHHHhhhh
Confidence 99999999999999999998765 3344333 3334444444444 44455566677888999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 000904 864 DRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAA-FCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQ 942 (1232)
Q Consensus 864 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~-~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~ 942 (1232)
++..+++.+.++...+...+...+.--+.-..++........+. ....+...|.+++|.+..++.|...+...+.++-.
T Consensus 347 ~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~ 426 (716)
T KOG0058|consen 347 EQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSS 426 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777666654333222211111111112222222222221 22344557899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECC
Q 000904 943 NQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGR 1021 (1232)
Q Consensus 943 ~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGr 1021 (1232)
.+.++.....+.+|+.++++.++.-+.. ....|. ...|.|+|+||+|.|+.. ..+||||+||+|+|||.||+|||
T Consensus 427 ~ys~lmkgvGAs~rvFel~dr~P~i~~~---G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGP 502 (716)
T KOG0058|consen 427 FYSELMKGVGASERVFELMDRKPRIPLT---GTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGP 502 (716)
T ss_pred HHHHHHHhcchHHHHHHHhccCCCCCCC---Cccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECC
Confidence 9999999999999999999876543321 212222 467999999999999532 23699999999999999999999
Q ss_pred CCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcC
Q 000904 1022 TGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCH 1100 (1232)
Q Consensus 1022 tGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~ 1100 (1232)
|||||||++++|.|+|+|++|+|++||+||++++.+.||++||+|.|||+||+|||+|||.... ..+||||.+|.++++
T Consensus 503 SGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~AN 582 (716)
T KOG0058|consen 503 SGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMAN 582 (716)
T ss_pred CCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999997433 579999999999999
Q ss_pred CcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecC
Q 000904 1101 LGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHR 1180 (1232)
Q Consensus 1101 L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHr 1180 (1232)
.++||.++|+|+||.|||+|.+|||||||||||||||+|||+|||||||||+||.++|..+|++|.+..+++|||+||||
T Consensus 583 ah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHR 662 (716)
T KOG0058|consen 583 AHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHR 662 (716)
T ss_pred hHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHHhh
Q 000904 1181 IPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWSH 1225 (1232)
Q Consensus 1181 l~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~~~ 1225 (1232)
|+||+.+|+|+|+++|+|+|.|+|+||+++++|.|++|+++....
T Consensus 663 LSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 663 LSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred hhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999976543
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-78 Score=742.73 Aligned_cols=509 Identities=27% Similarity=0.401 Sum_probs=438.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHH
Q 000904 709 VVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVG 788 (1232)
Q Consensus 709 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~ 788 (1232)
..+.+.++...++.++|.+.....+.+....+-.++++++++.|++||.++++|++++|+. |++.+...+.......+.
T Consensus 198 ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~ii 276 (709)
T COG2274 198 IGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLII 276 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3445556677888999999999999999999999999999999999999999999999986 566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHH
Q 000904 789 ATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFA 868 (1232)
Q Consensus 789 ~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~ 868 (1232)
.....+..++++.+++|+++++.+..+.++..+.-...+..|+..+..-...+...++..|++.|+.|+|+.+.|.++..
T Consensus 277 D~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~ 356 (709)
T COG2274 277 DLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRS 356 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHH
Confidence 77777788888999999988765544444443333333333333333334445567789999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 869 KNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFC-MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTL 947 (1232)
Q Consensus 869 ~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~ 947 (1232)
++.+..++..+..+.......+......++..+......++ +..+..|.++.|.+-.+.+....+.+++..+++.+.++
T Consensus 357 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~ 436 (709)
T COG2274 357 QWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDF 436 (709)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99998888887777776666666655555554443333332 33445789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChH
Q 000904 948 ANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKT 1027 (1232)
Q Consensus 948 e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKS 1027 (1232)
.....+.+|+.+.++.|+|.+. +..+...|+..|+|+|+||+|+|+++.|++|+|+|++|+|||+|||||+||||||
T Consensus 437 q~~~~~~~rL~dil~~~~E~~~---~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKS 513 (709)
T COG2274 437 QQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKS 513 (709)
T ss_pred HHHHHHHHHHHHHhcCCccccc---ccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHH
Confidence 9999999999999999888543 2223344567899999999999999888999999999999999999999999999
Q ss_pred HHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHH
Q 000904 1028 TLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVR 1106 (1232)
Q Consensus 1028 TLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~ 1106 (1232)
||+|+|.|+|+|++|+|++||+|+++++++++|++|+|||||+.||+||||||+...+ +.+|||+++|++.+|.+++|.
T Consensus 514 TL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~ 593 (709)
T COG2274 514 TLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIE 593 (709)
T ss_pred HHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998665 467899999999999999999
Q ss_pred hhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh
Q 000904 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1107 ~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~ 1186 (1232)
++|.||||.++|+|.|||||||||++|||||+++|+||||||||||||++||+.|.+.|.+...++|+|+||||++++++
T Consensus 594 ~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~ 673 (709)
T COG2274 594 NLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS 673 (709)
T ss_pred hcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred cCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHH
Q 000904 1187 CTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1187 ~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~ 1222 (1232)
||||+|||+|||+|+|+|+||++. +|.|+++++..
T Consensus 674 adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 674 ADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred ccEEEEccCCceeccCCHHHHHHh-cChHHHHHhcc
Confidence 999999999999999999999998 89999988753
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-74 Score=718.64 Aligned_cols=504 Identities=28% Similarity=0.432 Sum_probs=409.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHH
Q 000904 713 LIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTN 792 (1232)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~ 792 (1232)
++.+...++.+...+.....+.+...+++.++++++.+.|+++|+.++.|++++|+++|.+.++..+......+....+.
T Consensus 60 ~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~ 139 (567)
T COG1132 60 LLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILL 139 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHH
Confidence 33334455555555666666688899999999999999999999999999999999999999987776664444446777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHH
Q 000904 793 AYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLD 872 (1232)
Q Consensus 793 ~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~ 872 (1232)
.++.+++++..+|.+.++......+.......+.+..++..+......+.+.+.+.|++.|.++||+|+.++...++..+
T Consensus 140 ~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~ 219 (567)
T COG1132 140 LIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEE 219 (567)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHH
Confidence 78888888888898776654443333333333433445555555666678999999999999999999999866555544
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 873 LIDTNASPFFQTFAANEWLIQRLETLSATVISSAA-FCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYI 951 (1232)
Q Consensus 873 ~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~-~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~ 951 (1232)
..+...+..................+..+...... ........+.++.|.+..++.|...+..++..+......+....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 299 (567)
T COG1132 220 ANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRAS 299 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333322211111111111111222222111111 11222335678899999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHH
Q 000904 952 ISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIG 1031 (1232)
Q Consensus 952 ~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~ 1031 (1232)
.+.||+.++.+.+++... ...+ ..+..|+|+|+||+|+|++ .+++|+|+||+|++||++|||||||||||||++
T Consensus 300 ~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~ 373 (567)
T COG1132 300 AAAERLFELLDEEPEVED---PPDP--LKDTIGSIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIK 373 (567)
T ss_pred HHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 999999999887554221 1111 2345688999999999975 357999999999999999999999999999999
Q ss_pred HHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCC-CCHHHHHHHHHHcCCcHHHHhhcc
Q 000904 1032 ALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQ-HTDQEIWEVLAKCHLGEAVREKEN 1110 (1232)
Q Consensus 1032 ~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~-~sd~eI~~aL~~~~L~~~i~~~p~ 1110 (1232)
+|+|+++|++|+|.|||+||++++..+||++|++|||||.||+|||++||++..+ .+|||+++|++.++++|++.++|+
T Consensus 374 LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~ 453 (567)
T COG1132 374 LLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPD 453 (567)
T ss_pred HHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcc
Confidence 9999999999999999999999999999999999999999999999999998765 799999999999999999999999
Q ss_pred CCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeE
Q 000904 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMV 1190 (1232)
Q Consensus 1111 gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrV 1190 (1232)
||||.|||+|.+||||||||+|||||++++|+|||||||||++|++||+.|++.+++..+++|+|+||||++++++||+|
T Consensus 454 g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~I 533 (567)
T COG1132 454 GYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRI 533 (567)
T ss_pred cccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999877889999999999999999999
Q ss_pred EEEeCCEEEEecChhHHHhhcCCHHHHHHHHHH
Q 000904 1191 LAISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1191 lVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
+|||+|+|+|+|+|+||+++ +|.|++|+++..
T Consensus 534 iVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 534 IVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565 (567)
T ss_pred EEEECCEEEEecCHHHHHHc-CCHHHHHHHHhh
Confidence 99999999999999999997 899999998765
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-73 Score=707.60 Aligned_cols=506 Identities=19% Similarity=0.243 Sum_probs=400.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHH
Q 000904 711 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGAT 790 (1232)
Q Consensus 711 ~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~ 790 (1232)
+.++.++..++.+.+.+.....+.+...+++.++++++++.|.++|+..++|++++|+++|++.++......+..++...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~ 148 (588)
T PRK11174 69 LILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAV 148 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444555666777777778888899999999999999999999999999999999999999999988777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHH
Q 000904 791 TNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKN 870 (1232)
Q Consensus 791 ~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~ 870 (1232)
+..+..+++++..+|.+.++.+....+.......+.+..++..+......+...+++.|.++|+.+||+|+.++++.+++
T Consensus 149 ~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~ 228 (588)
T PRK11174 149 LVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESI 228 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHH
Confidence 77778888888889887655433333333333333344444444444455678889999999999999999999988887
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcchHHH---------HHHHHHHHHHHHHHHHH
Q 000904 871 LDLIDTNASPFFQTFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFI---------GMALSYGLSLNSSLVMS 940 (1232)
Q Consensus 871 ~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~g~~~~g~~---------gl~l~~~~~l~~~l~~~ 940 (1232)
.+..+...+..........+.......+..+..... ....... .|.++.|.+ -.++.+...+..++..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l 307 (588)
T PRK11174 229 RSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDL 307 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHH
Confidence 666555443332222221112222222222211111 1111111 244555432 12224455667778888
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEEC
Q 000904 941 IQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVG 1020 (1232)
Q Consensus 941 v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVG 1020 (1232)
...+..+.....+.+|+.++.+.|++.+.. ...+. ..+..+.|+|+||+|.|.++ +++|+|+||+|++||++||||
T Consensus 308 ~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~~-~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG 383 (588)
T PRK11174 308 GTFYHAKAQAVGAAESLVTFLETPLAHPQQ--GEKEL-ASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVG 383 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCC--Ccccc-CCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEEC
Confidence 888888999999999999998776543211 11111 11234679999999887654 579999999999999999999
Q ss_pred CCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHc
Q 000904 1021 RTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKC 1099 (1232)
Q Consensus 1021 rtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~ 1099 (1232)
+||||||||+++|.|++ |++|+|.+||+|+++++.+++|++|+||||||.+|+|||||||.... +.+|+|+++|++.|
T Consensus 384 ~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a 462 (588)
T PRK11174 384 PSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENA 462 (588)
T ss_pred CCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHh
Confidence 99999999999999999 99999999999999999999999999999999999999999998763 58999999999999
Q ss_pred CCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEec
Q 000904 1100 HLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAH 1179 (1232)
Q Consensus 1100 ~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAH 1179 (1232)
++++++.++|+||||.+||+|.+||||||||++||||++++|+|||||||||+||.+|++.|++.|++..+++|+|+|||
T Consensus 463 ~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItH 542 (588)
T PRK11174 463 WVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTH 542 (588)
T ss_pred CHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred ChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHH
Q 000904 1180 RIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1180 rl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
|++++.+||+|+||++|+++|.|+|++|+++ ++.|+++++...
T Consensus 543 rl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 543 QLEDLAQWDQIWVMQDGQIVQQGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred ChHHHHhCCEEEEEeCCeEeecCCHHHHHhc-chHHHHHHHHhh
Confidence 9999999999999999999999999999986 689999987654
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-73 Score=717.24 Aligned_cols=500 Identities=24% Similarity=0.340 Sum_probs=412.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHH
Q 000904 711 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGAT 790 (1232)
Q Consensus 711 ~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~ 790 (1232)
+.++.++..++...+.......+.+...+++.++++++++.|++||++++.|++++|+++|++.++..+...+...+...
T Consensus 207 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~ 286 (711)
T TIGR00958 207 MCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNL 286 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777788888888999999999999999999999999999999999999999999988888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHH
Q 000904 791 TNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKN 870 (1232)
Q Consensus 791 ~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~ 870 (1232)
...++.+++++..+|++.++.+....+...+...+.+..++..+......+...+++.|+++|+.+||+|+.++++.+++
T Consensus 287 ~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~ 366 (711)
T TIGR00958 287 VMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRF 366 (711)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHH
Confidence 88888888899999988765443333333334444444444444444455567789999999999999999999988887
Q ss_pred HHHHHhcCCchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 871 LDLIDTNASPFFQTFA---ANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTL 947 (1232)
Q Consensus 871 ~~~~d~~~~~~~~~~~---~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~ 947 (1232)
.+..++..+....... ...|....+..+..+.+... .......|.+++|.+..++.|...+..++..+.....++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~--g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~ 444 (711)
T TIGR00958 367 KEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYY--GGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGM 444 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776665443322211 12222222222222211111 122334788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCCh
Q 000904 948 ANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGK 1026 (1232)
Q Consensus 948 e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGK 1026 (1232)
.+...+.+|+.++++.+++.+.. .. ...++..|.|+|+||+|+|+.+ .+++|+|+||+|++||++||||+|||||
T Consensus 445 ~~~~~a~~ri~~~l~~~~~~~~~---~~-~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGK 520 (711)
T TIGR00958 445 MQAVGASEKVFEYLDRKPNIPLT---GT-LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGK 520 (711)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCC---CC-CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCH
Confidence 99999999999999876543221 11 1123456789999999999643 3579999999999999999999999999
Q ss_pred HHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCC-CCCCHHHHHHHHHHcCCcHHH
Q 000904 1027 TTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPL-SQHTDQEIWEVLAKCHLGEAV 1105 (1232)
Q Consensus 1027 STLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~-~~~sd~eI~~aL~~~~L~~~i 1105 (1232)
|||+++|.|+++|++|+|.+||+|+++++.+++|++|+||||||.+|+|||||||... .+.+|++++++++++++++++
T Consensus 521 STLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i 600 (711)
T TIGR00958 521 STVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFI 600 (711)
T ss_pred HHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999854 357899999999999999999
Q ss_pred HhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhh
Q 000904 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1106 ~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~ 1185 (1232)
+++|+|+||.++|+|.+||||||||++||||++++|+|||||||||+||.+|++.|++ ....+++|+|+||||++++.
T Consensus 601 ~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~ 678 (711)
T TIGR00958 601 MEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVE 678 (711)
T ss_pred HhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 33457899999999999999
Q ss_pred hcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHH
Q 000904 1186 DCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219 (1232)
Q Consensus 1186 ~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~ 1219 (1232)
.||+|+||++|+|+|.|+|+||+++ ++.|++|+
T Consensus 679 ~aD~IivL~~G~ive~Gt~~eL~~~-~~~y~~lv 711 (711)
T TIGR00958 679 RADQILVLKKGSVVEMGTHKQLMED-QGCYKHLV 711 (711)
T ss_pred hCCEEEEEECCEEEEeeCHHHHHhC-CCchHhcC
Confidence 9999999999999999999999986 67898874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-72 Score=713.64 Aligned_cols=504 Identities=25% Similarity=0.371 Sum_probs=413.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHH
Q 000904 709 VVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVG 788 (1232)
Q Consensus 709 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~ 788 (1232)
..++++.++..++.+.+.+.....+.+....++.++++++++.|++||++.+.|++++|+. |.+.+...+...+...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~ 258 (686)
T TIGR03797 180 LALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLL 258 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHH
Confidence 3344455566777888888888899999999999999999999999999999999999997 677777666655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHH
Q 000904 789 ATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFA 868 (1232)
Q Consensus 789 ~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~ 868 (1232)
.....+..+++++..+|++.++.+....+...+...+.+..+...+......+...+++.|++.|+.+||+++.++++.+
T Consensus 259 ~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 338 (686)
T TIGR03797 259 SGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFA 338 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHH
Confidence 55556667777888888877654433333332222222222333333333445678899999999999999999999888
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 869 KNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTL 947 (1232)
Q Consensus 869 ~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~ 947 (1232)
++.+..+...+..+.......|.......+..+..... .+.......|.++.|.+..+..+...+..++..+...+.++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~ 418 (686)
T TIGR03797 339 RWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISI 418 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777776665555444444444433333322222211 11222334788999998888888889999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChH
Q 000904 948 ANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKT 1027 (1232)
Q Consensus 948 e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKS 1027 (1232)
.....+.+|+.++++.|+|.+. +..++ .+..|.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||
T Consensus 419 ~~~~~~~~ri~~~l~~~~e~~~---~~~~~--~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKS 493 (686)
T TIGR03797 419 LAVIPLWERAKPILEALPEVDE---AKTDP--GKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKS 493 (686)
T ss_pred HHHHHHHHHHHHHhcCCccccc---CcCCC--CCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHH
Confidence 9999999999999887665421 11111 123578999999999976667899999999999999999999999999
Q ss_pred HHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHh
Q 000904 1028 TLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVRE 1107 (1232)
Q Consensus 1028 TLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~ 1107 (1232)
||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||||.+|+|||||||....+.+|+|++++++.+++++++.+
T Consensus 494 TLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~ 573 (686)
T TIGR03797 494 TLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRA 573 (686)
T ss_pred HHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999987766899999999999999999999
Q ss_pred hccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhc
Q 000904 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDC 1187 (1232)
Q Consensus 1108 ~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~ 1187 (1232)
+|.|+||.++|+|.+||||||||++||||++++|+|||||||||+||++|++.|++.|++. ++|+|+||||++++.++
T Consensus 574 lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~ 651 (686)
T TIGR03797 574 MPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNA 651 (686)
T ss_pred ccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999975 68999999999999999
Q ss_pred CeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHH
Q 000904 1188 TMVLAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1188 DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~ 1221 (1232)
|+|+||++|+++|.|+|++|+++ ++.|++|+++
T Consensus 652 D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~ 684 (686)
T TIGR03797 652 DRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARR 684 (686)
T ss_pred CEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHh
Confidence 99999999999999999999985 7999999874
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-71 Score=695.32 Aligned_cols=503 Identities=24% Similarity=0.379 Sum_probs=409.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHH
Q 000904 711 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGAT 790 (1232)
Q Consensus 711 ~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~ 790 (1232)
++++.++..++.+.+.+.....+.+...+++.++++++++.|.++|+..+.|++++|+.+|.+.++......+..++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~ 150 (592)
T PRK10790 71 YVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566677777777888888999999999999999999999999999999999999999988887777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHH
Q 000904 791 TNAYSNLGVLAVVTWQVLFVS---IPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFF 867 (1232)
Q Consensus 791 ~~~l~~l~v~~~~~~~~~l~~---~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~ 867 (1232)
...+..++++...+|.+.++. .|+.++... .+....+...+..........+++.|.+.|+.+||+|+.++++.
T Consensus 151 ~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~ 227 (592)
T PRK10790 151 ALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMV---IYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFG 227 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHH
Confidence 777778788888888765543 233322222 22222233333333345667888999999999999999999888
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 868 AKNLDLIDTNASPFFQTFAANEWL-IQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCT 946 (1232)
Q Consensus 868 ~~~~~~~d~~~~~~~~~~~~~~wl-~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~ 946 (1232)
+++.+..+...+..........+. ......+..+..............|.++.|.+..+..|...+..++..+...+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~ 307 (592)
T PRK10790 228 ERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSM 307 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777665554333222221111111 1111222221111111111112478899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCCh
Q 000904 947 LANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGK 1026 (1232)
Q Consensus 947 ~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGK 1026 (1232)
+++...+.+|+.++.+.+++++.. . ..++..+.|+++|++|+|+++ +++|+|+||+|++||++||||+|||||
T Consensus 308 ~~~~~~s~~ri~~~l~~~~~~~~~---~---~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGK 380 (592)
T PRK10790 308 LQQAVVAGERVFELMDGPRQQYGN---D---DRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGK 380 (592)
T ss_pred HHHHHHHHHHHHHHhcCCCccCCC---C---ccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCH
Confidence 999999999999998765442211 1 112345789999999999743 569999999999999999999999999
Q ss_pred HHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHH
Q 000904 1027 TTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVR 1106 (1232)
Q Consensus 1027 STLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~ 1106 (1232)
|||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||||.+|+||||+||..+++.+|++++++++++|+++++.
T Consensus 381 STLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~ 460 (592)
T PRK10790 381 STLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELAR 460 (592)
T ss_pred HHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred hhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh
Q 000904 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1107 ~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~ 1186 (1232)
++|+||||.++|+|.+||||||||++|||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++..
T Consensus 461 ~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~ 540 (592)
T PRK10790 461 SLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE 540 (592)
T ss_pred hccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988789999999999999999
Q ss_pred cCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHHh
Q 000904 1187 CTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWS 1224 (1232)
Q Consensus 1187 ~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~~ 1224 (1232)
||+|++|++|+++|.|+|++|+++ ++.|++|+++...
T Consensus 541 ~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~l~~~~~~ 577 (592)
T PRK10790 541 ADTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQLQLA 577 (592)
T ss_pred CCEEEEEECCEEEEEcCHHHHHhC-CCHHHHHHHHHhh
Confidence 999999999999999999999987 6999999986643
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-72 Score=712.26 Aligned_cols=507 Identities=21% Similarity=0.285 Sum_probs=416.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHH
Q 000904 709 VVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVG 788 (1232)
Q Consensus 709 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~ 788 (1232)
..+.++.++..++.+.+.+.....+.+....++.++++++++.|+++|+..+.|++++|+..| ..+...+...+...+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~ 276 (710)
T TIGR03796 198 LGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTAL 276 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHH
Confidence 334445556677788888888889999999999999999999999999999999999999988 4566556666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHH
Q 000904 789 ATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFA 868 (1232)
Q Consensus 789 ~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~ 868 (1232)
.....+..+++++..+|++.++.+..+.+...+...+.+..++..+......+...+++.|+++|+.+||+++.++.+.+
T Consensus 277 ~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~ 356 (710)
T TIGR03796 277 DAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFS 356 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHH
Confidence 77777778888888898887765544444444444444444444444444556678899999999999999999999888
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 869 KNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTL 947 (1232)
Q Consensus 869 ~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~ 947 (1232)
++.+..+...+..........+.......+..+..... .+.......|.++.|.+..+..+...+..++..+.....++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~ 436 (710)
T TIGR03796 357 RWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTL 436 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766555444433333333333332222222211111 11223334788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccCC--C-CCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCC
Q 000904 948 ANYIISVERLNQYMHVPSEAPEVVED--N-RPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGS 1024 (1232)
Q Consensus 948 e~~~~sveRi~~~~~~~~e~~~~~~~--~-~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGS 1024 (1232)
.....+.+|+.++++.|+|.+..... . ...+.++..|.|+++||+|+|+++.+++|+|+||+|++||++||||+|||
T Consensus 437 ~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGs 516 (710)
T TIGR03796 437 QELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGS 516 (710)
T ss_pred HHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCC
Confidence 99999999999999877664321100 0 01111344688999999999987667899999999999999999999999
Q ss_pred ChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcH
Q 000904 1025 GKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGE 1103 (1232)
Q Consensus 1025 GKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~ 1103 (1232)
|||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||||.+|+||||+||..++ +.+|++++++++.+++++
T Consensus 517 GKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~ 596 (710)
T TIGR03796 517 GKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHD 596 (710)
T ss_pred CHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999999999999999999999998764 579999999999999999
Q ss_pred HHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhh
Q 000904 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPT 1183 (1232)
Q Consensus 1104 ~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~t 1183 (1232)
++.++|.|+||.++|+|.+||||||||++||||++++|+|||||||||+||.+|++.|.+.|++ .++|+|+||||+++
T Consensus 597 ~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~ 674 (710)
T TIGR03796 597 VITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLST 674 (710)
T ss_pred HHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 58999999999999
Q ss_pred hhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHH
Q 000904 1184 VMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219 (1232)
Q Consensus 1184 i~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~ 1219 (1232)
+.+||||+|||+|+++|.|+|++|+++ ++.|++|+
T Consensus 675 i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 675 IRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred HHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 999999999999999999999999986 78899886
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-71 Score=706.43 Aligned_cols=501 Identities=23% Similarity=0.298 Sum_probs=405.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHH
Q 000904 711 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGAT 790 (1232)
Q Consensus 711 ~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~ 790 (1232)
+.++.++..++.+.+.+.....+.+...+++.++++++++.|+.+|++.+.|++++|++ |...+...........+...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~ 280 (708)
T TIGR01193 202 LIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDM 280 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHH
Confidence 33344555667788888888889999999999999999999999999999999999998 66666655544444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHH
Q 000904 791 TNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKN 870 (1232)
Q Consensus 791 ~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~ 870 (1232)
...+..+++++..+|++.++.+..+.+.......+.+..++..+......+...+++.|++.|+.+||+++.++++.+++
T Consensus 281 ~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 360 (708)
T TIGR01193 281 WILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKI 360 (708)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHH
Confidence 55566666777788887665433333333333333344444444444555667888999999999999999999888877
Q ss_pred HHHHHhcCCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 871 LDLIDTNASPFFQTFAANEWLI---QRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTL 947 (1232)
Q Consensus 871 ~~~~d~~~~~~~~~~~~~~wl~---~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~ 947 (1232)
.+..+...+..+.......+.. ..+..+..+.+... .......|.+++|.+..+..+...+..++..+...+.++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~--g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~ 438 (708)
T TIGR01193 361 DSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWT--GAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKL 438 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665554433332222221111 11111112111111 223334789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChH
Q 000904 948 ANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKT 1027 (1232)
Q Consensus 948 e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKS 1027 (1232)
.....+++|+.++++.|+|.+... .....++..|.|+++||+|+|++ .+++|+|+||+|++||++||||+||||||
T Consensus 439 ~~~~~~~~ri~~~l~~~~e~~~~~---~~~~~~~~~~~I~~~~vsf~y~~-~~~iL~~isl~i~~G~~vaIvG~SGsGKS 514 (708)
T TIGR01193 439 QAARVANNRLNEVYLVDSEFINKK---KRTELNNLNGDIVINDVSYSYGY-GSNILSDISLTIKMNSKTTIVGMSGSGKS 514 (708)
T ss_pred HHHHHHHHHHHHHHcCCCcccccc---cccCCCCCCCcEEEEEEEEEcCC-CCcceeceeEEECCCCEEEEECCCCCCHH
Confidence 999999999999998776643211 11122345688999999999964 45799999999999999999999999999
Q ss_pred HHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCC--CCCCHHHHHHHHHHcCCcHHH
Q 000904 1028 TLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPL--SQHTDQEIWEVLAKCHLGEAV 1105 (1232)
Q Consensus 1028 TLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~--~~~sd~eI~~aL~~~~L~~~i 1105 (1232)
||+++|+|+++|++|+|++||+|+++++.+++|++|+||||||.+|+|||||||... .+.+|++++++++.+++++++
T Consensus 515 TLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i 594 (708)
T TIGR01193 515 TLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDI 594 (708)
T ss_pred HHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999875 357899999999999999999
Q ss_pred HhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhh
Q 000904 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1106 ~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~ 1185 (1232)
.++|.||||.++|+|.+||||||||++||||++++|+|||||||||+||.+|++.+++.|++ .+++|+|+||||++++.
T Consensus 595 ~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~-~~~~T~IiitHr~~~~~ 673 (708)
T TIGR01193 595 ENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSVAK 673 (708)
T ss_pred HhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH-hcCCEEEEEecchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 47899999999999999
Q ss_pred hcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHH
Q 000904 1186 DCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1186 ~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
.||+|+||++|+++|.|+|++|+++ ++.|++|++
T Consensus 674 ~~D~i~~l~~G~i~~~G~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 674 QSDKIIVLDHGKIIEQGSHDELLDR-NGFYASLIH 707 (708)
T ss_pred cCCEEEEEECCEEEEECCHHHHHhc-CCcHHHHhh
Confidence 9999999999999999999999986 689999875
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-73 Score=702.55 Aligned_cols=513 Identities=22% Similarity=0.312 Sum_probs=407.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHH
Q 000904 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLI 784 (1232)
Q Consensus 705 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~ 784 (1232)
..+...|..+++...+..++........+.+...+++.+.++++++.++.|||.+..|++..|+++|+..++..+...+.
T Consensus 71 ~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg 150 (1228)
T KOG0055|consen 71 SKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVG 150 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHH
Confidence 45566677788888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHH
Q 000904 785 FAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED 864 (1232)
Q Consensus 785 ~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~ 864 (1232)
.++......++.+++.++..|++.++..+...+.......+.+........+....+...+...|++.+++|+.+|+.|+
T Consensus 151 ~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~ 230 (1228)
T KOG0055|consen 151 NFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEK 230 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcH
Confidence 99999999999999999999999876544333332222222222222222223333445566789999999999999999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HhcCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 000904 865 RFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISS---AAFCM-VLLPPGTFTPGFIGMALSYGLSLNSSLVMS 940 (1232)
Q Consensus 865 ~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~---~~~~~-~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~ 940 (1232)
+..+++.+.++...+..... .-|.+......-.+.... ..++. .++..+..++|.+...+...+.-...+...
T Consensus 231 ~e~~ry~~~L~~~~k~gi~~---g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa 307 (1228)
T KOG0055|consen 231 KEIERYSKALENALKFGIKK---GLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQA 307 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhcc
Confidence 99998888777655433221 122222222111111111 11111 222234555554433333333333334444
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEE
Q 000904 941 IQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIV 1019 (1232)
Q Consensus 941 v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIV 1019 (1232)
......+.+...+..++.+.++..+..........+. -...|.|+|+||+|+|+.. ..++|+|+||+|++||.||+|
T Consensus 308 ~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~--~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valV 385 (1228)
T KOG0055|consen 308 SPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVL--SSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALV 385 (1228)
T ss_pred ccchHHHhccccchHHHHHHhcCCCCCCcccccCCcc--cccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEE
Confidence 4556667777888889988776433221111111111 1246999999999999532 236999999999999999999
Q ss_pred CCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHH
Q 000904 1020 GRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAK 1098 (1232)
Q Consensus 1020 GrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~ 1098 (1232)
|+|||||||++++|.|+|+|++|+|+|||.||.+++.++||++||+|.|||+||++||+||+.... +.+++|+.+|++.
T Consensus 386 G~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ 465 (1228)
T KOG0055|consen 386 GPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKA 465 (1228)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998655 4789999999999
Q ss_pred cCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Q 000904 1099 CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVA 1178 (1232)
Q Consensus 1099 ~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IA 1178 (1232)
++.++++..+|+|+||.+||+|.+||||||||+||||||+++|+||+||||||+||+++++.+|++|++..+|+|.|+||
T Consensus 466 ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVa 545 (1228)
T KOG0055|consen 466 ANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVA 545 (1228)
T ss_pred ccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHH
Q 000904 1179 HRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1179 Hrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
|||+||+++|+|+||++|+|+|.|+|+||++++ |.|++|++...
T Consensus 546 HRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 546 HRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQE 589 (1228)
T ss_pred eehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHHh
Confidence 999999999999999999999999999999986 99999998654
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-71 Score=688.77 Aligned_cols=504 Identities=21% Similarity=0.298 Sum_probs=418.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHH
Q 000904 713 LIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTN 792 (1232)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~ 792 (1232)
++.++..++.+.+.+.....+.+....++.++++++++.|..+|++...|++++|+++|++.+.......+..++...+.
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~ 152 (582)
T PRK11176 73 GLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGAS 152 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777778888889999999999999999999999999999999999999988777777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHH
Q 000904 793 AYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLD 872 (1232)
Q Consensus 793 ~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~ 872 (1232)
.+..++++...+|.+.++.+..+.+.........+..++..+..........+++.|.+.|..+||+++.++++.+++.+
T Consensus 153 ~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~ 232 (582)
T PRK11176 153 IIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 232 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHH
Confidence 88888888888888766544443333333333333333433444445567788999999999999999999998888877
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 873 LIDTNASPFFQTFAANEWLIQRLETLSATVISSAAF-CMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYI 951 (1232)
Q Consensus 873 ~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~-~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~ 951 (1232)
..+...+..........+.......+..+....... .......|.+++|.+..++++...+..++..+...+..+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 312 (582)
T PRK11176 233 VSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGM 312 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766655544443333333333333333322222111 1223346889999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHH
Q 000904 952 ISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIG 1031 (1232)
Q Consensus 952 ~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~ 1031 (1232)
.+.+|+.++.+.+++.+.. ... ..|..+.|+++||+|+|+++.+++|+|+|++|++||++||||+||||||||++
T Consensus 313 ~~~~ri~~~~~~~~~~~~~---~~~--~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ 387 (582)
T PRK11176 313 AACQTLFAILDLEQEKDEG---KRV--IERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHHHHHHHhcCCCcCCCC---CcC--CCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHH
Confidence 9999999998776553211 111 12345679999999999766678999999999999999999999999999999
Q ss_pred HHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCC--CCCCHHHHHHHHHHcCCcHHHHhhc
Q 000904 1032 ALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPL--SQHTDQEIWEVLAKCHLGEAVREKE 1109 (1232)
Q Consensus 1032 ~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~~p 1109 (1232)
+|+|+++|++|+|.+||+|+++++.+++|++++||||||.+|+||||+||... ++++|+|++++++.++++++++++|
T Consensus 388 ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp 467 (582)
T PRK11176 388 LLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMD 467 (582)
T ss_pred HHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999854 2479999999999999999999999
Q ss_pred cCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCe
Q 000904 1110 NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTM 1189 (1232)
Q Consensus 1110 ~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~Dr 1189 (1232)
+||||.++|+|.+||||||||++||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++++.+||+
T Consensus 468 ~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~ 547 (582)
T PRK11176 468 NGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADE 547 (582)
T ss_pred cccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999988789999999999999999999
Q ss_pred EEEEeCCEEEEecChhHHHhhcCCHHHHHHHHH
Q 000904 1190 VLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1190 VlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~ 1222 (1232)
|++|++|+++|.|+|++|+++ ++.|++|+++.
T Consensus 548 Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~ 579 (582)
T PRK11176 548 ILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579 (582)
T ss_pred EEEEECCEEEEeCCHHHHHhC-CChHHHHHHHH
Confidence 999999999999999999987 68999998754
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-70 Score=677.84 Aligned_cols=502 Identities=20% Similarity=0.230 Sum_probs=400.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHH
Q 000904 714 IGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNA 793 (1232)
Q Consensus 714 l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~ 793 (1232)
++++..++.+...+.....+.+...+++.++++++++.|..+|++.+.|++++|+++|++.++......+..++...+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~ 148 (574)
T PRK11160 69 AAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVI 148 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666777777788888999999999999999999999999999999999999999988877777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHH
Q 000904 794 YSNLGVLAVVTWQVLFVSIPVI-FLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLD 872 (1232)
Q Consensus 794 l~~l~v~~~~~~~~~l~~~p~~-~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~ 872 (1232)
+..+++++..+|.+.++....+ ++.......+.+..+...+......+.+.+.+.|.++|+.+||+|+.++++.+++.+
T Consensus 149 ~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~ 228 (574)
T PRK11160 149 LVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQ 228 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHH
Confidence 8888889999998876542222 111222222333333333444445567788999999999999999999988888777
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000904 873 LIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLS-LNSSLVMSIQNQCTLANYI 951 (1232)
Q Consensus 873 ~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~-l~~~l~~~v~~~~~~e~~~ 951 (1232)
..++..+..........+.......+..+..............|.++.|.+..++.|... ....+..+...........
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~ 308 (574)
T PRK11160 229 TEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVI 308 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554443333332222222223332222221111111112567777776666555433 3345555556677778888
Q ss_pred HHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHH
Q 000904 952 ISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIG 1031 (1232)
Q Consensus 952 ~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~ 1031 (1232)
.+.+|+.++.+.+++.+.. ...++ .+..|.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||++
T Consensus 309 ~s~~ri~~ll~~~~~~~~~--~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ 384 (574)
T PRK11160 309 ASARRINEITEQKPEVTFP--TTSTA--AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQ 384 (574)
T ss_pred HHHHHHHHHHhCCCCCCCC--cccCC--CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHH
Confidence 9999999998876542211 01111 1335789999999999765457999999999999999999999999999999
Q ss_pred HHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhcc
Q 000904 1032 ALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKEN 1110 (1232)
Q Consensus 1032 ~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~ 1110 (1232)
+|.|+++|++|+|.+||+|+++++.+++|++++||||||.+|+|||++|+.... +.+|++++++++++++++++.+ |+
T Consensus 385 ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~ 463 (574)
T PRK11160 385 LLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DK 463 (574)
T ss_pred HHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-cc
Confidence 999999999999999999999999999999999999999999999999998654 5799999999999999999999 99
Q ss_pred CCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeE
Q 000904 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMV 1190 (1232)
Q Consensus 1111 gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrV 1190 (1232)
||||.++|+|.+||||||||++||||++++|+|||||||||+||.+|++.|++.|++..+++|+|+||||++++.+||+|
T Consensus 464 GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i 543 (574)
T PRK11160 464 GLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRI 543 (574)
T ss_pred ccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999887899999999999999999999
Q ss_pred EEEeCCEEEEecChhHHHhhcCCHHHHHHHH
Q 000904 1191 LAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1191 lVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~ 1221 (1232)
++|++|+++|.|+|+||+++ ++.|++|++.
T Consensus 544 ~~l~~G~i~~~g~~~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 544 CVMDNGQIIEQGTHQELLAQ-QGRYYQLKQR 573 (574)
T ss_pred EEEeCCeEEEeCCHHHHHhc-CcHHHHHHhh
Confidence 99999999999999999986 7899998863
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-70 Score=693.77 Aligned_cols=495 Identities=24% Similarity=0.306 Sum_probs=403.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHH
Q 000904 711 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGAT 790 (1232)
Q Consensus 711 ~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~ 790 (1232)
+.++.++..++.+.+.+.....+.+...+++.++++++++.|++| +..+.|++++|+ +|.+.+...+...+...+...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~ 270 (694)
T TIGR03375 193 VALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDL 270 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHH
Confidence 333445566777888888888999999999999999999999998 788999999999 799988877766655555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHH
Q 000904 791 TNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKN 870 (1232)
Q Consensus 791 ~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~ 870 (1232)
...+..+++++..+|.+.++.+..+.+.......+.+..++..+......+...+++.|++.|+.+||+|+.++++.+++
T Consensus 271 ~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 350 (694)
T TIGR03375 271 PFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRW 350 (694)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHH
Confidence 66666677777888887665433333333333333333333333344455677889999999999999999999998888
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 871 LDLIDTNASPFFQTFAANEWLIQRLETLSATVIS-SAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLAN 949 (1232)
Q Consensus 871 ~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~-~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~ 949 (1232)
.+..+...+..........+.......+..+... ...+.......|.+++|.+..+..+...+..++..+...+.++..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~ 430 (694)
T TIGR03375 351 EQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQ 430 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776655444333332222222222222211111 111112233478899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHH
Q 000904 950 YIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTL 1029 (1232)
Q Consensus 950 ~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTL 1029 (1232)
...+.+|+.++++.++|.+... ......+..|.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||
T Consensus 431 ~~~~~~ri~~il~~~~e~~~~~---~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTL 507 (694)
T TIGR03375 431 AKTALQSLDELMQLPVERPEGT---RFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTL 507 (694)
T ss_pred HHHHHHHHHHHHcCCCCCCCCC---CCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHH
Confidence 9999999999998776543211 1111113457899999999997656679999999999999999999999999999
Q ss_pred HHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhh
Q 000904 1030 IGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREK 1108 (1232)
Q Consensus 1030 l~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~ 1108 (1232)
+++|+|+|+|++|+|.+||+|+++++.+++|++++||||||.+|+|||||||.... +.+|+|++++++.+++++++.++
T Consensus 508 lklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~l 587 (694)
T TIGR03375 508 LKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRH 587 (694)
T ss_pred HHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999998765 48999999999999999999999
Q ss_pred ccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcC
Q 000904 1109 ENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCT 1188 (1232)
Q Consensus 1109 p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~D 1188 (1232)
|.||||.++|+|.+||||||||++||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++..||
T Consensus 588 p~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D 667 (694)
T TIGR03375 588 PDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVD 667 (694)
T ss_pred cccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred eEEEEeCCEEEEecChhHHHhh
Q 000904 1189 MVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1189 rVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+|+||++|+++|.|+|+||+++
T Consensus 668 ~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 668 RIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEEEEeCCEEEeeCCHHHHHHH
Confidence 9999999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-69 Score=673.46 Aligned_cols=507 Identities=23% Similarity=0.340 Sum_probs=433.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHH
Q 000904 710 VYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGA 789 (1232)
Q Consensus 710 v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~ 789 (1232)
.+.++.+...++.+.+.+.....+.+....++..+++++++.|.++|++.+.|++++|+++|++.++......+..++..
T Consensus 59 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~ 138 (571)
T TIGR02203 59 VVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRE 138 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677778888888889999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHH
Q 000904 790 TTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAK 869 (1232)
Q Consensus 790 ~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~ 869 (1232)
....+..+++++..+|++.++.+....+.......+.+..++..+......+...+.+.|.++|+.+||+++.++++.++
T Consensus 139 ~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~ 218 (571)
T TIGR02203 139 TLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRR 218 (571)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHH
Confidence 88889999999999999888766666665555556666556666666666778889999999999999999999998888
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 870 NLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLA 948 (1232)
Q Consensus 870 ~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e 948 (1232)
+.+..+...+..........+.......+..+..... .+.......|.+++|.+..+..+...+..++..+......+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~ 298 (571)
T TIGR02203 219 FDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQ 298 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777776655444433333333333333322222211 112223347889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHH
Q 000904 949 NYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTT 1028 (1232)
Q Consensus 949 ~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKST 1028 (1232)
+...+.+|+.++.+.+++.+.. ..+.. +..+.|+++||+|+|+++.+++|+|+||+|++||+++|+|+|||||||
T Consensus 299 ~~~~~~~ri~~~l~~~~~~~~~---~~~~~--~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKST 373 (571)
T TIGR02203 299 RGLAAAESLFTLLDSPPEKDTG---TRAIE--RARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKST 373 (571)
T ss_pred HHHHHHHHHHHHHcCCCCCCCC---CCCCC--CCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHH
Confidence 9999999999998766553211 11111 234689999999999765567999999999999999999999999999
Q ss_pred HHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC--CCCHHHHHHHHHHcCCcHHHH
Q 000904 1029 LIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS--QHTDQEIWEVLAKCHLGEAVR 1106 (1232)
Q Consensus 1029 Ll~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~--~~sd~eI~~aL~~~~L~~~i~ 1106 (1232)
|+++|.|+++|++|+|.+||+|+++++.+++|++++|+||||.+|+||||+||..+. +.+|++++++++++++++++.
T Consensus 374 Ll~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~ 453 (571)
T TIGR02203 374 LVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVD 453 (571)
T ss_pred HHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHH
Confidence 999999999999999999999999999999999999999999999999999998664 589999999999999999999
Q ss_pred hhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh
Q 000904 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1107 ~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~ 1186 (1232)
++|+||||.++|+|.+||||||||+|||||++++|+||+||||||+||.+|++.|.+.|++..+++|+|+||||++.+..
T Consensus 454 ~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~ 533 (571)
T TIGR02203 454 KLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEK 533 (571)
T ss_pred hCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred cCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHH
Q 000904 1187 CTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1187 ~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~ 1222 (1232)
||+|++|++|+++|.|+|++++++ ++.|++++++.
T Consensus 534 ~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~ 568 (571)
T TIGR02203 534 ADRIVVMDDGRIVERGTHNELLAR-NGLYAQLHNMQ 568 (571)
T ss_pred CCEEEEEeCCEEEeeCCHHHHHHc-CCHHHHHHHHh
Confidence 999999999999999999999986 68999887754
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-69 Score=624.26 Aligned_cols=512 Identities=22% Similarity=0.284 Sum_probs=405.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHH
Q 000904 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLI 784 (1232)
Q Consensus 705 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~ 784 (1232)
..+++..++..++..+....+.......+.+....+++++++++.+.+..+-...|.|+....+.+.++.++..+...+.
T Consensus 40 ~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLP 119 (559)
T COG4988 40 LPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLP 119 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666777777777778888889999999999999999999999999999999999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcc
Q 000904 785 FAVGATTNAYSNLGVLAVVTWQVLF---VSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFE 861 (1232)
Q Consensus 785 ~~~~~~~~~l~~l~v~~~~~~~~~l---~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~ 861 (1232)
....+.+..+..++.++..+|.-.+ +..|++.+++.+-..- ++...+..-.+-..+.+||.|.++|+.|+|+|+
T Consensus 120 q~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~---a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~ 196 (559)
T COG4988 120 QMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLA---AKDASEKQFSALARLSGHFLDRLRGLETLRAFG 196 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhc
Confidence 7778888888888888888887544 4567776665443221 122222222334568899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC-CCcchHHHHHHHHHHHHHHHHHHH
Q 000904 862 EEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVL-LPP-GTFTPGFIGMALSYGLSLNSSLVM 939 (1232)
Q Consensus 862 ~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~-~~~-g~~~~g~~gl~l~~~~~l~~~l~~ 939 (1232)
..+...++..+.-.+..+..........--...+|++...-+..++++... ... |.++-...-+++-.+.-+..++..
T Consensus 197 ~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~ 276 (559)
T COG4988 197 RTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRD 276 (559)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHH
Confidence 877665554443333322222222222222334555555444444443221 113 555554444455555566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEE
Q 000904 940 SIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIV 1019 (1232)
Q Consensus 940 ~v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIV 1019 (1232)
+-..+....+...+.+.+..+.+.|.+.+...+ .....|....+++.+|++++|+++. ++++|+||++++|+++|||
T Consensus 277 lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~--~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talv 353 (559)
T COG4988 277 LGSFFHAAAAGEAAADKLFTLLESPVATPGSGE--KAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALV 353 (559)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc--ccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEE
Confidence 777777777888888999999887765433211 1122232234566779999997654 7999999999999999999
Q ss_pred CCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCC-CCHHHHHHHHHH
Q 000904 1020 GRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQ-HTDQEIWEVLAK 1098 (1232)
Q Consensus 1020 GrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~-~sd~eI~~aL~~ 1098 (1232)
|+||||||||+++|.|+.+|++|+|.+||+|+.+++.+++|+++++|||+|++|+||||+||...+. .+|+||++++++
T Consensus 354 G~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~ 433 (559)
T COG4988 354 GASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQ 433 (559)
T ss_pred CCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987664 789999999999
Q ss_pred cCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Q 000904 1099 CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVA 1178 (1232)
Q Consensus 1099 ~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IA 1178 (1232)
+++.+++.. |+|||+.++|+|.+|||||+||++||||++++++++++||||||||.|||+.|++.|.+.++++|||+||
T Consensus 434 a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~it 512 (559)
T COG4988 434 AGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVIT 512 (559)
T ss_pred hcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEE
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHHh
Q 000904 1179 HRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWS 1224 (1232)
Q Consensus 1179 Hrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~~ 1224 (1232)
||++.+.++|+|+|||+|+++|.|+|++|.++ ++.|++|+++...
T Consensus 513 Hrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q~~ 557 (559)
T COG4988 513 HRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQEG 557 (559)
T ss_pred cChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHHhc
Confidence 99999999999999999999999999999986 7999999987653
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-69 Score=682.44 Aligned_cols=508 Identities=24% Similarity=0.329 Sum_probs=415.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHH
Q 000904 709 VVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVG 788 (1232)
Q Consensus 709 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~ 788 (1232)
..+.++.++..++.+.+.+.....+.+....++.++++++++.|+.+|++.+.|++++|+ +|.+.+...+...+...+.
T Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~ 261 (694)
T TIGR01846 183 LAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVL 261 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHH
Confidence 334455556677788888888889999999999999999999999999999999999999 6998888776665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHH
Q 000904 789 ATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFA 868 (1232)
Q Consensus 789 ~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~ 868 (1232)
.....+..+++++..+|.+.++.+..+++...+.....+..++..+......+...+++.|++.|+.+||+++.++++.+
T Consensus 262 ~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~ 341 (694)
T TIGR01846 262 DLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQN 341 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHH
Confidence 55555556777888888877654433333333222222222222233333445677899999999999999999999988
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 869 KNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAA-FCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTL 947 (1232)
Q Consensus 869 ~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~-~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~ 947 (1232)
++.+..+...+..........+.......+..+...... +.......|.++.|.+..+..+...+..++..+...+.++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~ 421 (694)
T TIGR01846 342 RWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDF 421 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777765554444433333333333333222221111 1122334688999999989999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChH
Q 000904 948 ANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKT 1027 (1232)
Q Consensus 948 e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKS 1027 (1232)
.....+.+|+.++++.|+|.+.. ...+.+ +..|.|+++||+|+|+++.+++|+|+||+|++||++||||+||||||
T Consensus 422 ~~~~~~~~ri~~~l~~~~e~~~~--~~~~~~--~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKS 497 (694)
T TIGR01846 422 QQTGIALERLGDILNSPTEPRSA--GLAALP--ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKS 497 (694)
T ss_pred HHHHHHHHHHHHHHcCCCCccCC--CCCCCC--CCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHH
Confidence 99999999999999877654321 111111 23578999999999987666799999999999999999999999999
Q ss_pred HHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHH
Q 000904 1028 TLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVR 1106 (1232)
Q Consensus 1028 TLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~ 1106 (1232)
||+++|.|+++|++|+|.+||+|+++++.+++|++++||||||.+|+||||+||...+ +.++++++++++.+++++++.
T Consensus 498 TL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~ 577 (694)
T TIGR01846 498 TLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFIS 577 (694)
T ss_pred HHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998654 578999999999999999999
Q ss_pred hhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh
Q 000904 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1107 ~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~ 1186 (1232)
++|.||||.++++|.+||||||||++||||++++|+|||||||||+||.+|++.+.+.|++..+++|+|+||||++++..
T Consensus 578 ~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ 657 (694)
T TIGR01846 578 ELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA 657 (694)
T ss_pred hCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988789999999999999999
Q ss_pred cCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHH
Q 000904 1187 CTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1187 ~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~ 1222 (1232)
||+|++|++|+++|.|+|++|+++ ++.|++|+++.
T Consensus 658 ~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 658 CDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred CCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHHhh
Confidence 999999999999999999999986 69999998753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-71 Score=612.03 Aligned_cols=503 Identities=21% Similarity=0.339 Sum_probs=387.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 000904 719 TLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLG 798 (1232)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~ 798 (1232)
.++.-+|.++.+-...-+.+.+-.++++++......|.-....|+++.-+.+..+.+.. +......+.-....+...++
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvtl-l~yvVF~i~PtllDl~va~v 351 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVTL-LEYVVFQIGPTLLDLGVAMV 351 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhhH-HHHHHhhcccHHHHhhhhhh
Confidence 44555666666667777888999999999999999999999999988877666555441 11111111111111111111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHH
Q 000904 799 -VLAVVTWQVLFVSIPVIFLAIRLQ----RYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDL 873 (1232)
Q Consensus 799 -v~~~~~~~~~l~~~p~~~l~~~~~----~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~ 873 (1232)
.....+|++.+++..+..++.... ..--+..|.+..-+.+ -...-.+++-+..|++-|+.++.-.+++.+.
T Consensus 352 YF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~ne----srAr~vDsllNFETVKyy~Ae~yEverYreA 427 (790)
T KOG0056|consen 352 YFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNE----SRARQVDSLLNFETVKYYNAEDYEVERYREA 427 (790)
T ss_pred hhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhh----hhhhhhhhhhcchhhhccCchhhhHHHHHHH
Confidence 122346666665555444443221 1111112222222222 2344568889999999999999988999888
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 874 IDTNASPFFQTFAANEWLIQRLETLSATVIS-SAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYII 952 (1232)
Q Consensus 874 ~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~-~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~ 952 (1232)
++.+++.-++....-..+...-+.+..+... .+.+.+..+..+..+.|-.-+..+|.+++.++++|+-..+-.++++.+
T Consensus 428 il~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfi 507 (790)
T KOG0056|consen 428 ILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFI 507 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhh
Confidence 8887765444333322222211111111111 122223333467788888889999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHH
Q 000904 953 SVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGA 1032 (1232)
Q Consensus 953 sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~ 1032 (1232)
-.|++.+.++.++|- .+....++-.-.+|.|+|+||+|.|.|+. +||+||||++.||+.+|+|||||+||||++++
T Consensus 508 DmEnmfdllkee~eV---vd~P~a~pl~~~~G~i~fsnvtF~Y~p~k-~vl~disF~v~pGktvAlVG~SGaGKSTimRl 583 (790)
T KOG0056|consen 508 DMENMFDLLKEEPEV---VDLPGAPPLKVTQGKIEFSNVTFAYDPGK-PVLSDISFTVQPGKTVALVGPSGAGKSTIMRL 583 (790)
T ss_pred hHHHHHHHhhcCchh---hcCCCCCCccccCCeEEEEEeEEecCCCC-ceeecceEEecCCcEEEEECCCCCchhHHHHH
Confidence 999999988654442 22111122223479999999999998865 69999999999999999999999999999999
Q ss_pred HhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccC
Q 000904 1033 LFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENG 1111 (1232)
Q Consensus 1033 L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~g 1111 (1232)
|+|+++.++|+|.|||+||+.+..+.||++||+||||.+||++||.+||.... ..+|||+.+|.+.++++|.|...|+|
T Consensus 584 LfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPeg 663 (790)
T KOG0056|consen 584 LFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEG 663 (790)
T ss_pred HHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchh
Confidence 99999999999999999999999999999999999999999999999998543 47999999999999999999999999
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEE
Q 000904 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVL 1191 (1232)
Q Consensus 1112 Ldt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVl 1191 (1232)
++|.|||+|-.||||||||+|+||++||+|.|++||||||+||..||+.||.+|.+..+++|.|+||||++||.++|.|+
T Consensus 664 Y~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~IL 743 (790)
T KOG0056|consen 664 YNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLIL 743 (790)
T ss_pred hhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChhHHHhhcCCHHHHHHH-HHHhhhhccc
Q 000904 1192 AISDGKLAEYDEPMKLMKREGSLFGQLVR-EYWSHLHSAE 1230 (1232)
Q Consensus 1192 VL~~G~vvE~g~p~~Ll~~~~~~f~~l~~-~~~~~~~~~~ 1230 (1232)
|+++|+|+|.|+|+||+.+++|.|++|++ +.+..+.+..
T Consensus 744 vi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~g~ts~d 783 (790)
T KOG0056|consen 744 VISNGRIVERGRHEELLKRDGGAYADMWQAQQAMGKTSAD 783 (790)
T ss_pred EEeCCeEeecCcHHHHHhccCCcHHHHHHHHHhcCccccc
Confidence 99999999999999999999999999995 4444444333
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-68 Score=606.57 Aligned_cols=505 Identities=23% Similarity=0.320 Sum_probs=374.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHH
Q 000904 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLI 784 (1232)
Q Consensus 705 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~ 784 (1232)
...+..|.+..+++.+|..++...+.....+.-+....+.+.+.++..+++|.+..+|.+-+.+......+...+...+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999998888777666555444433322222
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchH
Q 000904 785 FAVGATTNAYSNLG-VLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEE 863 (1232)
Q Consensus 785 ~~~~~~~~~l~~l~-v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~ 863 (1232)
.++...+.+..... +..-..+.+.++.......|..+.-....-....++.-..+.....+...|++.+-.+||.|+.|
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE 233 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNE 233 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccH
Confidence 22222221111111 11112222332222222222111000000011112222333344556778999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh----cCCCCcchHHHHHHHHHHHHHHHHHH
Q 000904 864 DRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAF-CMVL----LPPGTFTPGFIGMALSYGLSLNSSLV 938 (1232)
Q Consensus 864 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~-~~~~----~~~g~~~~g~~gl~l~~~~~l~~~l~ 938 (1232)
++-.+++...+....+...... .|+.+ +++....++.+... .+++ ...+.++.|..-+..+...++..++.
T Consensus 234 ~~Ea~~y~~~l~~~~~~~~~~~---~sl~~-lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~ 309 (591)
T KOG0057|consen 234 EYEASRYDGSLKTYERAGLKYS---SSLAF-LNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLN 309 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhHH---hHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHH
Confidence 9888887776665544332222 22221 22222222211111 1111 23456777777777777778888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEE
Q 000904 939 MSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGI 1018 (1232)
Q Consensus 939 ~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgI 1018 (1232)
.+-..+.++..++.-.+-+....+. +.. ..+. +++--+..|.|+|+||+|.|.|+ +++|+|+||+|++||||||
T Consensus 310 ~Lg~vyr~~~q~l~Dm~~~~~l~~~--~~~--i~~~-~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaI 383 (591)
T KOG0057|consen 310 FLGSVYRELRQALTDMRTLFILLEV--DED--IQEA-ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAI 383 (591)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhhh--hhh--hhhc-cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEE
Confidence 7777777776666555444332111 110 1111 11112345789999999999865 4699999999999999999
Q ss_pred ECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHH
Q 000904 1019 VGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLA 1097 (1232)
Q Consensus 1019 VGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~ 1097 (1232)
||+|||||||++++|+|+++ ++|+|+|||+||++++++.+|+.||+||||..||++||.+|+...+ ..+|||+.++++
T Consensus 384 vG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k 462 (591)
T KOG0057|consen 384 VGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACK 462 (591)
T ss_pred ECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999999999999999999999999998554 479999999999
Q ss_pred HcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q 000904 1098 KCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITV 1177 (1232)
Q Consensus 1098 ~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~I 1177 (1232)
+++++|.+.++|+|++|.|||+|..||||||||++||||++|+|+|+++|||||+||.+||+.|.+.|.....++|+|+|
T Consensus 463 ~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~I 542 (591)
T KOG0057|consen 463 RAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMI 542 (591)
T ss_pred HcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred ecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHH
Q 000904 1178 AHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1178 AHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~ 1221 (1232)
+||++++++||+|+++|+|+|+|+|+|+||++ +++.|+.++..
T Consensus 543 vH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~ 585 (591)
T KOG0057|consen 543 VHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTT 585 (591)
T ss_pred EecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcc
Confidence 99999999999999999999999999999999 68888887754
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-68 Score=606.89 Aligned_cols=498 Identities=19% Similarity=0.261 Sum_probs=391.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHH
Q 000904 716 FVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYS 795 (1232)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~ 795 (1232)
+...+.-+...+..-....+.-..++.++++++...+..-......|+++||+..|++.+|...-..+...+........
T Consensus 69 I~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~ 148 (573)
T COG4987 69 ILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAV 148 (573)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHH
Confidence 33344444444444455566777889999999988877777888999999999999999998776666666666665555
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHH
Q 000904 796 NLGVLAVVTWQVLFVSI-PVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLI 874 (1232)
Q Consensus 796 ~l~v~~~~~~~~~l~~~-p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~ 874 (1232)
..+.....+|.+.+... -+.++...+.-.+.+..+...+.-...+..+.+++.|.+.|....+.||.++++.+......
T Consensus 149 ~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e 228 (573)
T COG4987 149 VTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATE 228 (573)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHH
Confidence 66666666776654322 22222222222233334444444455677889999999999999999999999988877666
Q ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000904 875 DTNASPFFQTFAANEWLIQRLETLSATVISS-AAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSI-QNQCTLANYII 952 (1232)
Q Consensus 875 d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~-~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v-~~~~~~e~~~~ 952 (1232)
+...+..........|....+.++....+.. ..+.......|..+...+.+++--.+.....+.-+. ....++.....
T Consensus 229 ~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~ 308 (573)
T COG4987 229 ASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIA 308 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHH
Confidence 6655555566666677777666666665552 233333344565553222222222222223332222 34466777788
Q ss_pred HHHHHHhhccCCCCCCcccCCCCCCCCCCCcc-eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHH
Q 000904 953 SVERLNQYMHVPSEAPEVVEDNRPPPNWPVVG-KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIG 1031 (1232)
Q Consensus 953 sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G-~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~ 1031 (1232)
|.+|+.+..+.++|.... . +.-|..+ .++++||+|+|+.+.+++|+|+||++++||||||+||||||||||++
T Consensus 309 Sa~Rl~~i~~q~~e~~~~---~---~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllq 382 (573)
T COG4987 309 SARRLNDILDQKPEVTFP---D---EQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQ 382 (573)
T ss_pred HHHHHhhhccCCcccCCC---c---cccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHH
Confidence 999999887766554321 1 1112222 79999999999888889999999999999999999999999999999
Q ss_pred HHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhcc
Q 000904 1032 ALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKEN 1110 (1232)
Q Consensus 1032 ~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~ 1110 (1232)
+|.|-++|++|+|..+|.+++.++-+++|+.|++++|.+.+|++|+|+||...+ +.||||+|++|+++||.+.+++.|+
T Consensus 383 Ll~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~ 462 (573)
T COG4987 383 LLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPD 462 (573)
T ss_pred HHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChh
Confidence 999999999999999999999999999999999999999999999999997544 5899999999999999999999999
Q ss_pred CCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeE
Q 000904 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMV 1190 (1232)
Q Consensus 1111 gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrV 1190 (1232)
||+|.+||+|.+||||||||++|||+||++.++++|||||.+||++||+.|.+.|.+..+|+|+|+||||+.-+..||||
T Consensus 463 gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drI 542 (573)
T COG4987 463 GLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRI 542 (573)
T ss_pred hhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCEEEEecChhHHHhhcCCHHHHHHH
Q 000904 1191 LAISDGKLAEYDEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1191 lVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
+|||+|+++|.|+|++|+++ +|.|++|.+
T Consensus 543 ivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 543 IVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred EEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 99999999999999999995 799999875
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=658.22 Aligned_cols=507 Identities=23% Similarity=0.349 Sum_probs=412.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHH
Q 000904 712 LLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATT 791 (1232)
Q Consensus 712 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~ 791 (1232)
+++.++..++.+.+.+.....+.+....++.++++++++.|.++|+....|++++|+++|.+.++......+...+...+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~ 144 (576)
T TIGR02204 65 LVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNAL 144 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445556677777778888999999999999999999999999999999999999999998877777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHH
Q 000904 792 NAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNL 871 (1232)
Q Consensus 792 ~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~ 871 (1232)
..++.+++++..+|++.++.+....+.......+.+..+...+..........+++.|.+.|..+||+++.++++.+++.
T Consensus 145 ~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~ 224 (576)
T TIGR02204 145 MCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFG 224 (576)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHH
Confidence 77788888888888876554333333332333333344444444445566778899999999999999999999887777
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 872 DLIDTNASPFFQTFAANEWLIQRLETLSATVISS-AAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANY 950 (1232)
Q Consensus 872 ~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~-~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~ 950 (1232)
+..+...+..........+.......+....... ..+.......|.++.|.+..+..|...+..++..+...+.++.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~ 304 (576)
T TIGR02204 225 GAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRA 304 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666544433333222233322222221111111 111122334788999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCC-CccceeeeEEEeCCcEEEEECCCCCChHHH
Q 000904 951 IISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDS-PLVLKGISCTFEGGHKIGIVGRTGSGKTTL 1029 (1232)
Q Consensus 951 ~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~-~~vL~~vsl~I~~GekvgIVGrtGSGKSTL 1029 (1232)
..+.+|+.++.+.+++.+... ......+|..+.|+++||+|+|+++. +++|+|+||+|+|||+++|+|+||||||||
T Consensus 305 ~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTL 382 (576)
T TIGR02204 305 AGAAERLIELLQAEPDIKAPA--HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTL 382 (576)
T ss_pred HHHHHHHHHHhCCCCcCCCCC--CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHH
Confidence 999999999987655422111 11111234456899999999997533 579999999999999999999999999999
Q ss_pred HHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhh
Q 000904 1030 IGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREK 1108 (1232)
Q Consensus 1030 l~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~ 1108 (1232)
+++|+|+++|++|+|.+||+|+++++.+++|++++|+||||.+|+||||+||.... +.+|++++++|+++++.+++.++
T Consensus 383 lklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l 462 (576)
T TIGR02204 383 FQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISAL 462 (576)
T ss_pred HHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999998654 46899999999999999999999
Q ss_pred ccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcC
Q 000904 1109 ENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCT 1188 (1232)
Q Consensus 1109 p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~D 1188 (1232)
|+|+||.++|+|.+||||||||++||||++++|+|||||||||+||.+|++.+.+.|++..+++|+|+||||++.+..+|
T Consensus 463 ~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d 542 (576)
T TIGR02204 463 PEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKAD 542 (576)
T ss_pred CCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred eEEEEeCCEEEEecChhHHHhhcCCHHHHHHHH
Q 000904 1189 MVLAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1189 rVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~ 1221 (1232)
+|++|++|+++|.|+|++++++ ++.|++|++.
T Consensus 543 ~vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~~~ 574 (576)
T TIGR02204 543 RIVVMDQGRIVAQGTHAELIAK-GGLYARLARL 574 (576)
T ss_pred EEEEEECCEEEeeecHHHHHHc-CChHHHHHhh
Confidence 9999999999999999999885 7899998864
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-67 Score=656.78 Aligned_cols=489 Identities=20% Similarity=0.273 Sum_probs=394.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 730 VVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLF 809 (1232)
Q Consensus 730 ~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l 809 (1232)
.....+....+..++++++++.|..+|++.+.|++++|+++|++.+.......+...+...+..+..++++...+|++.+
T Consensus 81 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 160 (588)
T PRK13657 81 DRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSL 160 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566679999999999999999999999999999999887655555555555556666666677778888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 000904 810 VSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANE 889 (1232)
Q Consensus 810 ~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 889 (1232)
+.+..+++...+...+.+..++..+......+...+++.|.+.|..+||+|+.++++.+++.+..+...+..........
T Consensus 161 ~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (588)
T PRK13657 161 VLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWA 240 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555555666666666655566667888999999999999999999998877776665554433322222222
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 000904 890 WLIQRLETLSATVISS-AAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAP 968 (1232)
Q Consensus 890 wl~~rl~~~~~~~~~~-~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~ 968 (1232)
+..........+.... ..........|.+++|.+..++.+...+..++..+......+.....+.+|+.+..+.+.+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 320 (588)
T PRK13657 241 LASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVR 320 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 2222122221111111 111223344788999999999999999999998888888888888899999998876544322
Q ss_pred cccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECC
Q 000904 969 EVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG 1048 (1232)
Q Consensus 969 ~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG 1048 (1232)
.. ....+.. +..+.|+++||+|+|+++ +++|+|+|+++++||++||||+||||||||+++|+|+++|++|+|.+||
T Consensus 321 ~~--~~~~~~~-~~~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g 396 (588)
T PRK13657 321 DP--PGAIDLG-RVKGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDG 396 (588)
T ss_pred CC--CCCCCcC-CCCCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC
Confidence 11 1111111 234679999999999643 5699999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhH
Q 000904 1049 IDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1049 ~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
+|+++++.+++|++|+||||||.+|+||||+||.... +.+|++++++++.+++.+++.++|+|+||.++++|.+|||||
T Consensus 397 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 476 (588)
T PRK13657 397 TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGE 476 (588)
T ss_pred EEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHH
Confidence 9999999999999999999999999999999998653 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHH
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
|||++||||++++|+|||||||||+||.+|++.|.+.|++..+++|+|+||||++.+..+|+|++|++|+++|.|+|++|
T Consensus 477 ~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l 556 (588)
T PRK13657 477 RQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDEL 556 (588)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999987779999999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHH
Q 000904 1208 MKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1208 l~~~~~~f~~l~~~~~ 1223 (1232)
+++ ++.|++|+++..
T Consensus 557 ~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 557 VAR-GGRFAALLRAQG 571 (588)
T ss_pred HHC-CChHHHHHHHhh
Confidence 986 689999998654
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-67 Score=651.68 Aligned_cols=509 Identities=21% Similarity=0.268 Sum_probs=402.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHH
Q 000904 709 VVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVG 788 (1232)
Q Consensus 709 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~ 788 (1232)
.+++++.++..++.+.+.+.....+.+...+++.++++++++.|+++|++.++|++++|+++|++.+.......+..++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~ 119 (569)
T PRK10789 40 GTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVD 119 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444455556666666677788889999999999999999999999999999999999999987555555555555
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHH
Q 000904 789 ATTNAYSNLGVL-AVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFF 867 (1232)
Q Consensus 789 ~~~~~l~~l~v~-~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~ 867 (1232)
..+..+..++++ ...+|.+.++.+..+.+.......+.+..++..+......+.+.+++.|.+.|+.+||+|+.++++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~ 199 (569)
T PRK10789 120 SLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQS 199 (569)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHH
Confidence 544444444444 4677776655433333333333333333333333334455678889999999999999999999988
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 868 AKNLDLIDTNASPFFQTFAANEWLIQRLETLSATV-ISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCT 946 (1232)
Q Consensus 868 ~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~-~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~ 946 (1232)
+++.+..+...+..........+............ +............|.++.|.+..+..|...+..++..+......
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~ 279 (569)
T PRK10789 200 ALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNI 279 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777665544333322222221111111111111 11111112233478899999988888988888888888888999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCCh
Q 000904 947 LANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGK 1026 (1232)
Q Consensus 947 ~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGK 1026 (1232)
+.....+.+|+.++.+.+++.+. ...+.+ +..|.|+++|++|+|+++.+++|+|+||+|++||++||||+|||||
T Consensus 280 ~~~~~~a~~ri~~ll~~~~~~~~---~~~~~~--~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGK 354 (569)
T PRK10789 280 VERGSAAYSRIRAMLAEAPVVKD---GSEPVP--EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGK 354 (569)
T ss_pred HHHHHHHHHHHHHHHcCCCcccC---CCCCCC--CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCH
Confidence 99999999999999876544221 111111 2346799999999997655679999999999999999999999999
Q ss_pred HHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHH
Q 000904 1027 TTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAV 1105 (1232)
Q Consensus 1027 STLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i 1105 (1232)
|||+++|.|+++|++|+|.+||+|+++++.+++|++++|+||||.+|+||+|+|+.... +.+|++++++++.+++++++
T Consensus 355 STLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i 434 (569)
T PRK10789 355 STLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDI 434 (569)
T ss_pred HHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999998653 57999999999999999999
Q ss_pred HhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhh
Q 000904 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1106 ~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~ 1185 (1232)
.++|+|+||.++++|.+||||||||++||||++++|+|||||||||+||.++++.+.+.|++..+++|+|+||||++++.
T Consensus 435 ~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~ 514 (569)
T PRK10789 435 LRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT 514 (569)
T ss_pred HhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998778999999999999999
Q ss_pred hcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHH
Q 000904 1186 DCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1186 ~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
.||+|++|++|+++|.|+|++|+++ ++.|++|++...
T Consensus 515 ~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 551 (569)
T PRK10789 515 EASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQ 551 (569)
T ss_pred cCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhh
Confidence 9999999999999999999999986 689999997544
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-67 Score=651.62 Aligned_cols=464 Identities=23% Similarity=0.292 Sum_probs=373.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHH
Q 000904 715 GFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAY 794 (1232)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l 794 (1232)
.++..++.+...+.....+.+...+++.++++++++.|.++|++.++|++++|+++|++.++......+..++......+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~ 142 (529)
T TIGR02868 63 GIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGS 142 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666677777788888999999999999999999999999999999999999999888777777777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHH
Q 000904 795 SNLGVLAVVTWQVLFVSIPVIFLAIR-LQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDL 873 (1232)
Q Consensus 795 ~~l~v~~~~~~~~~l~~~p~~~l~~~-~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~ 873 (1232)
..+++++..+|.+.++.+..+.+... ....+.+..+...+......+...+++.|.++|+.+||+|+.++++.+++.+.
T Consensus 143 ~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~ 222 (529)
T TIGR02868 143 AAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAA 222 (529)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHH
Confidence 88888888999887765433333222 22223333333333334455778899999999999999999999988887776
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 874 IDTNASPFFQTFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYII 952 (1232)
Q Consensus 874 ~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~ 952 (1232)
.+...+..........+.......+..+..... .........|.++.|.+...+.|...+..++..+......+.+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (529)
T TIGR02868 223 DRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRA 302 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544433322222222221222222111111 1112233468899999988888988888888888888899999999
Q ss_pred HHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHH
Q 000904 953 SVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGA 1032 (1232)
Q Consensus 953 sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~ 1032 (1232)
+.+|+.++.+.+++.+... ...+...+|..+.|+|+||+|+|+++ +++|+|+||+|++||++||||+||||||||+++
T Consensus 303 ~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~l 380 (529)
T TIGR02868 303 AAERIEEVTGAKGPRPEGV-VPAAGALGLGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLML 380 (529)
T ss_pred HHHHHHHHhcCCCCcCCCC-CCCCcccCCCCceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 9999999987765432211 11111123445789999999999754 469999999999999999999999999999999
Q ss_pred HhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccC
Q 000904 1033 LFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENG 1111 (1232)
Q Consensus 1033 L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~g 1111 (1232)
|+|+++|++|+|.+||+|++++ .+++|++++||||||.+|+|||||||.... +.+|+|+++|++.+++++++.++|+|
T Consensus 381 L~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~G 459 (529)
T TIGR02868 381 LTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDG 459 (529)
T ss_pred HhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCccc
Confidence 9999999999999999999999 999999999999999999999999998754 57999999999999999999999999
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 000904 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRI 1181 (1232)
Q Consensus 1112 Ldt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl 1181 (1232)
|||.+||+|.+||||||||+|||||++++|+|||||||||+||.+|++.|++.|++..+++|+|+||||+
T Consensus 460 ldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 460 LDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred ccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999888899999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-66 Score=642.35 Aligned_cols=497 Identities=21% Similarity=0.267 Sum_probs=398.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000904 723 MSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAV 802 (1232)
Q Consensus 723 ~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~ 802 (1232)
+...........+...+++.++++++++.|+++|+++++|++++|+++|++.+.......+...+...+..+..+++++.
T Consensus 74 ~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (585)
T TIGR01192 74 VLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFA 153 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455555666778999999999999999999999999999999998876666665556666666666677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchH
Q 000904 803 VTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFF 882 (1232)
Q Consensus 803 ~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~ 882 (1232)
.+|.+.++.+.+..+...+...+.+..++..+......+...+++.|.+.|+.+||+|+.++++.+++.+..+...+..+
T Consensus 154 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 233 (585)
T TIGR01192 154 MDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQY 233 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 89988776555555555555555555555555555566778899999999999999999998887776665554333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000904 883 QTFAANEWLIQRLETLSATVISS-AAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYM 961 (1232)
Q Consensus 883 ~~~~~~~wl~~rl~~~~~~~~~~-~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~ 961 (1232)
.......+.......+..+.... ..+.......|.++.|.+..++.|...+..++..+.....++.....+.+|+.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~ 313 (585)
T TIGR01192 234 PVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLE 313 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111111111111111111111 11112233478899999988899998888888888888888888899999999887
Q ss_pred cCCCCCCcccCCCCCCCCC-CCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC
Q 000904 962 HVPSEAPEVVEDNRPPPNW-PVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA 1040 (1232)
Q Consensus 962 ~~~~e~~~~~~~~~~~~~w-p~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~ 1040 (1232)
+.+++.+. ...+ ..+ +..+.|+++||+|+|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|+
T Consensus 314 ~~~~~~~~---~~~~-~~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~ 388 (585)
T TIGR01192 314 DSVFQREE---PADA-PELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT 388 (585)
T ss_pred cCCccccC---CccC-CCCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC
Confidence 65543211 1111 111 234679999999999743 46899999999999999999999999999999999999999
Q ss_pred ccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCC
Q 000904 1041 GGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVED 1119 (1232)
Q Consensus 1041 ~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~ 1119 (1232)
+|+|.+||+|+++++.+++|++++|+||||.+|++|+|+|+.... +.+|++++++++.+++.+++.++|+|+||.++++
T Consensus 389 ~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~ 468 (585)
T TIGR01192 389 VGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGER 468 (585)
T ss_pred CCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCC
Confidence 999999999999999999999999999999999999999998653 4689999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEE
Q 000904 1120 GSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLA 1199 (1232)
Q Consensus 1120 G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vv 1199 (1232)
|.+||||||||++|||||+++|+|||||||||+||.+|++.+++.|++..+++|+|+||||++++..||+|++|++|+++
T Consensus 469 ~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~ 548 (585)
T TIGR01192 469 GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLI 548 (585)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999877899999999999999999999999999999
Q ss_pred EecChhHHHhhcCCHHHHHHHHHHhh
Q 000904 1200 EYDEPMKLMKREGSLFGQLVREYWSH 1225 (1232)
Q Consensus 1200 E~g~p~~Ll~~~~~~f~~l~~~~~~~ 1225 (1232)
|.|+|++++++ ++.|+++++.....
T Consensus 549 ~~g~~~~l~~~-~~~y~~l~~~~~~~ 573 (585)
T TIGR01192 549 EKGSFQELIQK-DGRFYKLLRRSGLL 573 (585)
T ss_pred EECCHHHHHHC-CChHHHHHHhCccc
Confidence 99999999986 68999999876543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-66 Score=635.69 Aligned_cols=481 Identities=21% Similarity=0.256 Sum_probs=384.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHH
Q 000904 708 IVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAV 787 (1232)
Q Consensus 708 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~ 787 (1232)
...+.++.++..++.+.+.+.....+.+...+++.++++++++.|..+|++.+.|++++|+++|.+.++......+..++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~ 126 (529)
T TIGR02857 47 LGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLV 126 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34455556666777888888888889999999999999999999999999999999999999999999877766666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHH
Q 000904 788 GATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFF 867 (1232)
Q Consensus 788 ~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~ 867 (1232)
......+..++++...+|.+.++.+....+.......+.+..+...+..........+++.|.++|+.+||+|+.++++.
T Consensus 127 ~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~ 206 (529)
T TIGR02857 127 LAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQA 206 (529)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHH
Confidence 77777777777888888876554332222222222222222222222333344567789999999999999999999988
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 868 AKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCT 946 (1232)
Q Consensus 868 ~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~ 946 (1232)
+++.+..+...+..........+.......+..+..... .+.......|.++.|.+..+..|...+..++..+......
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~ 286 (529)
T TIGR02857 207 AAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHA 286 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887766555444333322222232222222222222111 1112222367899998888888888888888888888999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCCh
Q 000904 947 LANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGK 1026 (1232)
Q Consensus 947 ~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGK 1026 (1232)
+.....+.+|+.++.+.+++... . .+...+..+.|+++||+|+|+++.+++|+|+||+|++||++||||+|||||
T Consensus 287 ~~~~~~~~~ri~~ll~~~~~~~~----~-~~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGK 361 (529)
T TIGR02857 287 RADGVAAAEALFAVLDAPRPLAG----K-APVTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGK 361 (529)
T ss_pred HHHHHHHHHHHHHHhCCCcccCC----C-cCCCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCH
Confidence 99999999999999875433211 1 111122346899999999997655579999999999999999999999999
Q ss_pred HHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHH
Q 000904 1027 TTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAV 1105 (1232)
Q Consensus 1027 STLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i 1105 (1232)
|||+++|.|+++|++|+|.+||+|+++++.+++|++++||||||.+|+||||||+.... +.+|++++++++.+++++++
T Consensus 362 STL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i 441 (529)
T TIGR02857 362 STLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFV 441 (529)
T ss_pred HHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999998654 57899999999999999999
Q ss_pred HhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhh
Q 000904 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1106 ~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~ 1185 (1232)
+++|+||||.++|+|.+||||||||++||||++++|+||+||||||+||++|++.+++.|++..+++|+|+||||++++.
T Consensus 442 ~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 521 (529)
T TIGR02857 442 AALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE 521 (529)
T ss_pred HhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998878999999999999999
Q ss_pred hcCeEEEE
Q 000904 1186 DCTMVLAI 1193 (1232)
Q Consensus 1186 ~~DrVlVL 1193 (1232)
.||+|+||
T Consensus 522 ~~d~i~~l 529 (529)
T TIGR02857 522 RADRIVVL 529 (529)
T ss_pred hCCEEEeC
Confidence 99999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-67 Score=578.37 Aligned_cols=484 Identities=22% Similarity=0.341 Sum_probs=380.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHH---HHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHH
Q 000904 729 SVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRV---LSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLG-VLAVVT 804 (1232)
Q Consensus 729 ~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~i---lnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~-v~~~~~ 804 (1232)
+...+..+.+.+--+.+.++....+.|.-+..+|.+ +.|=++.++.+-. ..+...+-..+.+....+ ......
T Consensus 6 fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~---~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 6 FSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILR---WILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHH---HHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 334455555666667778888888888766555544 4443444443332 222222222222222222 223356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHH
Q 000904 805 WQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQT 884 (1232)
Q Consensus 805 ~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~ 884 (1232)
|++..+.....+++.+..-....-.-..+|.-..+.+...+...+++-+..|++.|+.|+.+..++.+.++.+.+.....
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 77777666666666554433333333444555556666777888999999999999999998888877777766555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 000904 885 FAANEWLIQRLETLSATVISSAAF-CMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHV 963 (1232)
Q Consensus 885 ~~~~~wl~~rl~~~~~~~~~~~~~-~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~ 963 (1232)
.....||...-..+.......... ....+..|.++.|.....-.+.+++..+++.+-..+.++.+.....|++.+..+.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 444445544332222211111111 1122346789999999999999999999999999999999999999999988776
Q ss_pred CCCCCcccCCCCCCCCCC-CcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCcc
Q 000904 964 PSEAPEVVEDNRPPPNWP-VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGG 1042 (1232)
Q Consensus 964 ~~e~~~~~~~~~~~~~wp-~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G 1042 (1232)
+.|.. +....++-|| ..|.|.|+||+|.|.|.. ++|+|+||++++|+++||||++|+||||+.++|+|+|++++|
T Consensus 243 ~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 243 EAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred chhhc---cCCCCccccccccceEEEEEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 65532 1222344565 358899999999998765 699999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCC
Q 000904 1043 KILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121 (1232)
Q Consensus 1043 ~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~ 1121 (1232)
.|.|||+||.++..+.+|+.||+||||.+||++|+.+|+...+ ..+++|++.|++.++++++++.+|+|+|+.|||.|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 9999999999999999999999999999999999999998655 479999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEe
Q 000904 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1122 nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~ 1201 (1232)
.||||||||++|||++|++|+||+||||||+||..||+.||.+|++..+++|.++||||++||.|+|.|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHhhcCCHHHHHHH
Q 000904 1202 DEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1202 g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
|+|++|+.+ +|.|++|+.
T Consensus 479 g~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 479 GTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred CcHHHHHHc-CChHHHHhc
Confidence 999999997 899999974
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=617.44 Aligned_cols=491 Identities=20% Similarity=0.216 Sum_probs=381.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhh-HHHHH
Q 000904 708 IVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPF-SLIFA 786 (1232)
Q Consensus 708 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~-~l~~~ 786 (1232)
..+++++.++..++.+.+.+.....+.+....++.++++++++.|+.. .+...+++.+|++.+...... .+..+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~ 123 (544)
T TIGR01842 49 TVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAF 123 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444455566777778888888889999999999999999999843 255678889999988765544 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHH
Q 000904 787 VGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 866 (1232)
Q Consensus 787 ~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f 866 (1232)
+...+..+ .+++++..+|++.++.+....+...+.....+..+...+......+...+++.|.++|+.+||+|+.++.+
T Consensus 124 ~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~ 202 (544)
T TIGR01842 124 FDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNL 202 (544)
T ss_pred HHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHH
Confidence 33333333 34566777777665433222222222222222223333333445566788999999999999999999988
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 867 FAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVI-SSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQC 945 (1232)
Q Consensus 867 ~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~-~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~ 945 (1232)
.+++.+..++..+..................+..+.. ....+.......|.+++|.+..++.+...+..++..+.....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~ 282 (544)
T TIGR01842 203 TKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWK 282 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877766655443332222111111111111111111 111122223347889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCC
Q 000904 946 TLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSG 1025 (1232)
Q Consensus 946 ~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSG 1025 (1232)
++.....+.+|+.++.+.+++.+. ....+ +..+.|+++|++|+|+++.+++|+|+||+|++||++||||+||||
T Consensus 283 ~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsG 356 (544)
T TIGR01842 283 QFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSG 356 (544)
T ss_pred HHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCC
Confidence 999999999999999876554321 11111 234679999999999765567999999999999999999999999
Q ss_pred hHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHH
Q 000904 1026 KTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEA 1104 (1232)
Q Consensus 1026 KSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~ 1104 (1232)
||||+++|+|+++|++|+|.+||+|+.+++.+++|++++|+||||.+|++|+|+|+..++ +.+|++++++++.++++++
T Consensus 357 KSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~ 436 (544)
T TIGR01842 357 KSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHEL 436 (544)
T ss_pred HHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHH
Confidence 999999999999999999999999999999999999999999999999999999998655 4789999999999999999
Q ss_pred HHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh
Q 000904 1105 VREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPT 1183 (1232)
Q Consensus 1105 i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~t 1183 (1232)
++++|+|+||.++++|.+||||||||++||||++++|+|||||||||+||.+|++.+.+.|++.. +++|+|+||||+++
T Consensus 437 i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~ 516 (544)
T TIGR01842 437 ILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSL 516 (544)
T ss_pred HHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999864 57999999999999
Q ss_pred hhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1184 VMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1184 i~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+..||+|++|++|+++|.|+|++|+++
T Consensus 517 ~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 517 LGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999999753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=664.20 Aligned_cols=512 Identities=20% Similarity=0.259 Sum_probs=401.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHH
Q 000904 707 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFA 786 (1232)
Q Consensus 707 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~ 786 (1232)
+...+++++++..++.+++.+.....+.+...+++.++++++++.|++|||..+.|++.+|++.|.+.+...+...+..+
T Consensus 99 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~ 178 (1466)
T PTZ00265 99 IIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITI 178 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777778888999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHH
Q 000904 787 VGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 866 (1232)
Q Consensus 787 ~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f 866 (1232)
+...+..++.++++++.+|.+.++.+.++.+...+...+.+..+...+......+...+.+.|++.|+++|++|+.|+++
T Consensus 179 ~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~ 258 (1466)
T PTZ00265 179 FTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTI 258 (1466)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHH
Confidence 88889999999999999999877644433333333333333333334444444456778899999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCC--------CCcchHHHHHHHHHHHHHHHHH
Q 000904 867 FAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFC-MVLLPP--------GTFTPGFIGMALSYGLSLNSSL 937 (1232)
Q Consensus 867 ~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~-~~~~~~--------g~~~~g~~gl~l~~~~~l~~~l 937 (1232)
.+++.+..+...+..........+.......+..+......++ ..+... +.+++|.+...+.+.+.....+
T Consensus 259 ~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l 338 (1466)
T PTZ00265 259 LKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFML 338 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHH
Confidence 8888766555444333222222111111111111111111111 111112 2455554444433333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCC-CCccceeeeEEEeCCcEE
Q 000904 938 VMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKI 1016 (1232)
Q Consensus 938 ~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~Gekv 1016 (1232)
..+......+.....+.+|+.+.++.+++.+.. .+. ...|..+.|+|+||+|+|+.. ..++|+|+||+|++||++
T Consensus 339 ~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~~---~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~v 414 (1466)
T PTZ00265 339 TIILPNITEYMKSLEATNSLYEIINRKPLVENN-DDG---KKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTY 414 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCC---ccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEE
Confidence 445566778888899999999998766543211 111 112233579999999999643 236999999999999999
Q ss_pred EEECCCCCChHHHHHHHhccccCCccEEEE-CCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC----------
Q 000904 1017 GIVGRTGSGKTTLIGALFRLVEPAGGKILV-DGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS---------- 1085 (1232)
Q Consensus 1017 gIVGrtGSGKSTLl~~L~rl~ep~~G~I~I-DG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~---------- 1085 (1232)
||||+||||||||+++|.|+++|++|+|.+ ||.|+++++.+++|++|+||||||.+|++||++||....
T Consensus 415 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~ 494 (1466)
T PTZ00265 415 AFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALS 494 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhc
Confidence 999999999999999999999999999999 679999999999999999999999999999999996421
Q ss_pred ------------------------------------------------CCCHHHHHHHHHHcCCcHHHHhhccCCccccc
Q 000904 1086 ------------------------------------------------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVV 1117 (1232)
Q Consensus 1086 ------------------------------------------------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~ 1117 (1232)
+.+|++++++++++++++++.++|+|+||.++
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg 574 (1466)
T PTZ00265 495 NYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG 574 (1466)
T ss_pred cccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC
Confidence 24678999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeC
Q 000904 1118 EDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISD 1195 (1232)
Q Consensus 1118 e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~ 1195 (1232)
++|.+||||||||++|||||+++|+|||||||||+||+++++.|++.|++.. +++|+|+||||++++..||+|+||++
T Consensus 575 ~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999864 47999999999999999999999998
Q ss_pred C-----------------------------------------------EEEEecChhHHHhhcCCHHHHHHHHH
Q 000904 1196 G-----------------------------------------------KLAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1196 G-----------------------------------------------~vvE~g~p~~Ll~~~~~~f~~l~~~~ 1222 (1232)
| +|+|.|+|+||+++++|.|+.|++..
T Consensus 655 g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 655 RERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred CccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 6 59999999999986789999999654
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-61 Score=595.70 Aligned_cols=479 Identities=17% Similarity=0.181 Sum_probs=363.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHH
Q 000904 713 LIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTN 792 (1232)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~ 792 (1232)
++.++..++.+...+.....+.+...+++.++++++++.|+.+|++.+.|++++|+++|++.++.... .+...+...+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~~~~ 139 (555)
T TIGR01194 61 GLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIALAI 139 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHHHHH
Confidence 33444556667777777788889999999999999999999999999999999999999999987664 35556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHH--HHHHHH
Q 000904 793 AYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED--RFFAKN 870 (1232)
Q Consensus 793 ~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~--~f~~~~ 870 (1232)
.+..+++++..+|.+.++.+..+.+.........+..++..+......+.+.+++.|.+.|+.++|+|+.++ ...+++
T Consensus 140 ~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 219 (555)
T TIGR01194 140 FFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAI 219 (555)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHh
Confidence 777788888889888766443333322222222222222223333344568889999999999999999854 223333
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 871 LDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANY 950 (1232)
Q Consensus 871 ~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~ 950 (1232)
.+..+...+..................+........... ....|.++.|.+..++.|...+..++..+.....++...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a 297 (555)
T TIGR01194 220 QESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFA--AAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQA 297 (555)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332222211111111111111111111111111111 111267888988888889999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCccc--CC-CCC--CCCCCCcceEEEEeeEeEecCC---CCccceeeeEEEeCCcEEEEECCC
Q 000904 951 IISVERLNQYMHVPSEAPEVV--ED-NRP--PPNWPVVGKVDICDLQIRYRPD---SPLVLKGISCTFEGGHKIGIVGRT 1022 (1232)
Q Consensus 951 ~~sveRi~~~~~~~~e~~~~~--~~-~~~--~~~wp~~G~I~~~nvs~~Y~~~---~~~vL~~vsl~I~~GekvgIVGrt 1022 (1232)
..+.+|+.++.+.+.+++... ++ ... .+..+..+.|+++||+|+|++. .+++|+|+||+|++||++||||+|
T Consensus 298 ~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~s 377 (555)
T TIGR01194 298 QIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGEN 377 (555)
T ss_pred HHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCC
Confidence 999999999875432211110 00 000 0111224689999999999643 236999999999999999999999
Q ss_pred CCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCc
Q 000904 1023 GSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLG 1102 (1232)
Q Consensus 1023 GSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~ 1102 (1232)
|||||||+++|.|+++|++|+|.+||+|+++++.+++|+++++|||||.+|++|+++|+.| +.++++++++++.++++
T Consensus 378 GsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~~l~ 455 (555)
T TIGR01194 378 GCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGE--HASLDNAQQYLQRLEIA 455 (555)
T ss_pred CCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccccc--chhHHHHHHHHHHcCCc
Confidence 9999999999999999999999999999999999999999999999999999999999743 56889999999999999
Q ss_pred HHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHH-h-cCCcEEEEEecC
Q 000904 1103 EAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA-E-FADCTVITVAHR 1180 (1232)
Q Consensus 1103 ~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~-~-~~~~TVI~IAHr 1180 (1232)
+++.++|+|+||. .+||||||||++||||++++|+|||||||||+||++|++.+++.+.+ . .+++|+|+||||
T Consensus 456 ~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~ 530 (555)
T TIGR01194 456 DKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD 530 (555)
T ss_pred hhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 9999999999984 68999999999999999999999999999999999999999887643 2 358999999999
Q ss_pred hhhhhhcCeEEEEeCCEEEEe
Q 000904 1181 IPTVMDCTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1181 l~ti~~~DrVlVL~~G~vvE~ 1201 (1232)
++++..||+|+||++|+++|.
T Consensus 531 ~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 531 DQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999985
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=622.92 Aligned_cols=474 Identities=20% Similarity=0.235 Sum_probs=357.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 730 VVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLF 809 (1232)
Q Consensus 730 ~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l 809 (1232)
...+.+....+...++++.++.|..++++...|+++|++++|++.++... ..+..+....+.++..+.++...-....+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l 444 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASL 444 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45667777788889999999999999999999999999999999998754 23333333333333222222111001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 000904 810 VSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANE 889 (1232)
Q Consensus 810 ~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 889 (1232)
+..++.++...+...+.+..+..++.....+....+.+.|.++|+++||.|++|+.+.++..+..+...+..........
T Consensus 445 ~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~ 524 (1495)
T PLN03232 445 FGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSA 524 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222222233333333344444444455677889999999999999999999988776654443322222111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc
Q 000904 890 WLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPE 969 (1232)
Q Consensus 890 wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~ 969 (1232)
+........ ..++....+.......|.+++|.+-.++++...+..++..+......+.+...+.+|+.++++.+++.+.
T Consensus 525 ~~~~~~~~~-~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~ 603 (1495)
T PLN03232 525 FNSFILNSI-PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA 603 (1495)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 111101111 1111111222222336789999998888888888888888888889999999999999999876543211
Q ss_pred ccCCCCCCCCCCCcceEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECC
Q 000904 970 VVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG 1048 (1232)
Q Consensus 970 ~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG 1048 (1232)
..++ ..+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+.
T Consensus 604 ----~~~~-~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--- 675 (1495)
T PLN03232 604 ----QNPP-LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--- 675 (1495)
T ss_pred ----ccCC-cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---
Confidence 0111 11233579999999999753 35799999999999999999999999999999999999999998763
Q ss_pred eeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1049 IDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1049 ~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
.+|++|+||||+|.+|+|||||||....++++++++++++.|++.++++.+|+|+||.|||+|.+||||||
T Consensus 676 ---------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 746 (1495)
T PLN03232 676 ---------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746 (1495)
T ss_pred ---------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHH
Confidence 35789999999999999999999997777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHH-HHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMIL-QKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~I-q~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
||++||||++++|+|++||||||+||.+|++.| ++.++...+++|+|+||||++++..||+|++|++|+++|.|+|++|
T Consensus 747 QRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL 826 (1495)
T PLN03232 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAEL 826 (1495)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999999999999999999999877 5557766689999999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHH
Q 000904 1208 MKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1208 l~~~~~~f~~l~~~~~ 1223 (1232)
+++ ++.|++++++..
T Consensus 827 ~~~-~~~~~~l~~~~~ 841 (1495)
T PLN03232 827 SKS-GSLFKKLMENAG 841 (1495)
T ss_pred Hhc-chhHHHHHHhcc
Confidence 975 688999987654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-58 Score=615.66 Aligned_cols=473 Identities=19% Similarity=0.235 Sum_probs=359.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 730 VVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLF 809 (1232)
Q Consensus 730 ~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l 809 (1232)
...+.+....+...++++.++.|...+...+.|+++|+++.|++.++.... .+..+....+.++..+.++........+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777888899999999999999999999999999999999987653 3333344444433333332221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 000904 810 VSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANE 889 (1232)
Q Consensus 810 ~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 889 (1232)
+..+++++...++..+.+..+..++.....+....+.+.|.++|+++||.|++|+.+.++..+..+...+..........
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223333333343434444444444556677889999999999999999999888776654443221111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc
Q 000904 890 WLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPE 969 (1232)
Q Consensus 890 wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~ 969 (1232)
+....... ....+....+.......|.+++|.+..++++...+..++..+......+.....+.+|+.++++.+++.+.
T Consensus 525 ~~~~~~~~-~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~ 603 (1622)
T PLN03130 525 FNSFILNS-IPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL 603 (1622)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 11110011 11111111222222336789999988888888888888888888889999999999999999875433211
Q ss_pred ccCCCCCCCCCCCcceEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCc-cEEEEC
Q 000904 970 VVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG-GKILVD 1047 (1232)
Q Consensus 970 ~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~-G~I~ID 1047 (1232)
.. ++ .-+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|.+ |+|.+
T Consensus 604 ---~~-~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l- 677 (1622)
T PLN03130 604 ---PN-PP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI- 677 (1622)
T ss_pred ---cC-Cc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-
Confidence 00 11 01223579999999999743 3579999999999999999999999999999999999999999 99974
Q ss_pred CeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhH
Q 000904 1048 GIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1048 G~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
|++|+||||+|.+|+|||||||....++++++++++++.|+|.++++.+|+|+||.|||+|.+|||||
T Consensus 678 ------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQ 745 (1622)
T PLN03130 678 ------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQ 745 (1622)
T ss_pred ------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHH
Confidence 56899999999999999999999777789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHH-HHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhH
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMIL-QKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~I-q~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
||||+||||++++|+|+|||||||+||.++++.| ++.++...+++|+|+||||++++..+|+|++|++|+++|.|++++
T Consensus 746 KQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~e 825 (1622)
T PLN03130 746 KQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEE 825 (1622)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999866 567777668999999999999999999999999999999999999
Q ss_pred HHhhcCCHHHHHHHHHH
Q 000904 1207 LMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1207 Ll~~~~~~f~~l~~~~~ 1223 (1232)
|+++ ++.|++++++.+
T Consensus 826 L~~~-~~~~~~l~~~~~ 841 (1622)
T PLN03130 826 LSNN-GPLFQKLMENAG 841 (1622)
T ss_pred HHhc-chhHHHHHHhcc
Confidence 9975 688999987654
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-57 Score=564.99 Aligned_cols=464 Identities=17% Similarity=0.190 Sum_probs=342.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 000904 719 TLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLG 798 (1232)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~ 798 (1232)
.++.++..+.....+.+...+++.++++++++.|+++|++.++|++++|+++|++.+..... .+...+...+..+..++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~ 140 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAA 140 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34455666777778888999999999999999999999999999999999999998876443 45556677777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchH---HHHHHHHHHHHH
Q 000904 799 VLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEE---DRFFAKNLDLID 875 (1232)
Q Consensus 799 v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~---~~f~~~~~~~~d 875 (1232)
+++..+|.+.++.+..+.+...+...+.+..+...+......+...+++.|.+.|+.+++ ++.+ +++.+++.+..+
T Consensus 141 ~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~ 219 (547)
T PRK10522 141 YLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQ 219 (547)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHH
Confidence 888889988776544443333333333333333333334455678889999999999995 4433 234444444443
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 876 TNASPFFQTFAANEWLIQRLETLSATV-ISSAAFCMVLL-PPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIIS 953 (1232)
Q Consensus 876 ~~~~~~~~~~~~~~wl~~rl~~~~~~~-~~~~~~~~~~~-~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~s 953 (1232)
...+..... .+............ ....+...+.. ..+....+..+....+.+.+..++..+.....++.....+
T Consensus 220 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a 295 (547)
T PRK10522 220 EYRHHIIRA----DTFHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVA 295 (547)
T ss_pred HHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222111 11111111111111 11111111111 0111223333333444445567788888888889999999
Q ss_pred HHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHH
Q 000904 954 VERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGAL 1033 (1232)
Q Consensus 954 veRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L 1033 (1232)
.+|+.++.+.|.+++. +...+. |..+.|+++||+|+|++ .+++|+|+||+|++||++||||+||||||||+++|
T Consensus 296 ~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~-~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll 369 (547)
T PRK10522 296 FNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQD-NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLL 369 (547)
T ss_pred HHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCC-CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999998655433211 011111 12357999999999974 34699999999999999999999999999999999
Q ss_pred hccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCc
Q 000904 1034 FRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLD 1113 (1232)
Q Consensus 1034 ~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLd 1113 (1232)
+|+++|++|+|.+||+|+++++.+++|++++||||||.+|++|+++| ....+|++++++++++++.+.+.. ++|.
T Consensus 370 ~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~- 444 (547)
T PRK10522 370 TGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR- 444 (547)
T ss_pred hCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-
Confidence 99999999999999999999999999999999999999999999998 235678899999999999876653 3332
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEE
Q 000904 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVL 1191 (1232)
Q Consensus 1114 t~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVl 1191 (1232)
.+|.+||||||||++||||++++|+|||||||||+||.++++.+.+.+.+.. +++|+|+||||++++..||+|+
T Consensus 445 ----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~ 520 (547)
T PRK10522 445 ----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLL 520 (547)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEE
Confidence 2478999999999999999999999999999999999999999999987644 4799999999999999999999
Q ss_pred EEeCCEEEEecC
Q 000904 1192 AISDGKLAEYDE 1203 (1232)
Q Consensus 1192 VL~~G~vvE~g~ 1203 (1232)
+|++|+++|.+.
T Consensus 521 ~l~~G~i~e~~~ 532 (547)
T PRK10522 521 EMRNGQLSELTG 532 (547)
T ss_pred EEECCEEEEecC
Confidence 999999998843
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=506.51 Aligned_cols=479 Identities=22% Similarity=0.267 Sum_probs=349.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHH
Q 000904 714 IGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNA 793 (1232)
Q Consensus 714 l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~ 793 (1232)
+.++..++..+|.......+.+....+....+...+++|..--...+..+.+ +|++.+...+...-...+.-.-..
T Consensus 72 ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~ 147 (580)
T COG4618 72 LYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWM 147 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchH
Confidence 3345567788899999999999988898888888887765433222222222 355544433321111100000011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHH
Q 000904 794 YSNLGVLAVVTWQVLFVSIPVIFL----AIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAK 869 (1232)
Q Consensus 794 l~~l~v~~~~~~~~~l~~~p~~~l----~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~ 869 (1232)
-..+.+++...|++.++.+...++ .+.-++.-.+..++ .++....-.++...+..+..+|++.+...+..++
T Consensus 148 P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~e----A~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~r 223 (580)
T COG4618 148 PLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKE----ASEASIRANQLADATLRNAEVIEAMGMLGNLAKR 223 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH----HHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHH
Confidence 123445555666665443322222 22222222222222 2333344456677788899999999986655444
Q ss_pred H----HHHHHhcCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 870 N----LDLIDTNASPFFQTFAAN-EWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQ 944 (1232)
Q Consensus 870 ~----~~~~d~~~~~~~~~~~~~-~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~ 944 (1232)
+ ...++.+.+......... ---..|+-+- . ....+.+++..+|++++|.+-..--..-....++...+..|
T Consensus 224 W~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQ-s---~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~W 299 (580)
T COG4618 224 WGRFNAAYLSAQERASDRNGAFGALSRALRMALQ-S---AVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANW 299 (580)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-H---HHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHH
Confidence 3 333333333222111100 0001111110 1 11122234445788999987655444455667888889999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCC
Q 000904 945 CTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGS 1024 (1232)
Q Consensus 945 ~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGS 1024 (1232)
.+......|..|+.+.+...++..... +-|+ .+|.+.++++.+.=++..+++|+|+||++++||-+||||||||
T Consensus 300 kq~~~Ar~s~~Rl~~lL~~~p~~~~~m----~LP~--P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgS 373 (580)
T COG4618 300 KQFVAARQSYKRLNELLAELPAAAERM----PLPA--PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGS 373 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCC----CCCC--CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCc
Confidence 999999999999999886544332111 1111 2589999999986555566899999999999999999999999
Q ss_pred ChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcH
Q 000904 1025 GKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGE 1103 (1232)
Q Consensus 1025 GKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~ 1103 (1232)
|||||.++|.|..+|.+|+|.+||-|+.+++.+++-++|||.|||-.||+|||.+||.-|+ +.+++.|.+|.+.++.+|
T Consensus 374 GKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHe 453 (580)
T COG4618 374 GKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHE 453 (580)
T ss_pred cHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHH
Confidence 9999999999999999999999999999999999999999999999999999999999888 577888999999999999
Q ss_pred HHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChh
Q 000904 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIP 1182 (1232)
Q Consensus 1104 ~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ 1182 (1232)
.|.++|+||||.+||+|..||||||||++||||+..+|+++|||||-|+||.+-|+.+.++|.+. .+++|+|+||||++
T Consensus 454 lIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs 533 (580)
T COG4618 454 LILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS 533 (580)
T ss_pred HHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999998874 46899999999999
Q ss_pred hhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1183 TVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1183 ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
.+..+|+|+||++|++..||+-+|.+++
T Consensus 534 ~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 534 ALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999999999875
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-53 Score=571.25 Aligned_cols=475 Identities=18% Similarity=0.237 Sum_probs=355.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 727 LSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQ 806 (1232)
Q Consensus 727 ~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~ 806 (1232)
+.....+.+....+...+++++++.|..+++....|+++|+++.|.+.+.... ..+..+....+.++..+.++......
T Consensus 380 ~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~ 458 (1522)
T TIGR00957 380 HICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGP 458 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34456778888889999999999999999999999999999999999887533 23333333444433333333222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHHHH
Q 000904 807 VLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFA 886 (1232)
Q Consensus 807 ~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~ 886 (1232)
..++.+.++++...+...+.+..+..++.....+....+...|.++|+++||.+++|+.+.++..+..+...+...
T Consensus 459 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~---- 534 (1522)
T TIGR00957 459 SVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLK---- 534 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----
Confidence 1112111122222223333333333333334445556788999999999999999999988776655444322211
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHH--HHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000904 887 ANEWLIQRLETL---SATVISSAAF--CMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYM 961 (1232)
Q Consensus 887 ~~~wl~~rl~~~---~~~~~~~~~~--~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~ 961 (1232)
...++....... ...++....+ +.+....+.++++.+-.++++...+..++..+......+.....+.+|+.+++
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l 614 (1522)
T TIGR00957 535 KSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFL 614 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111 1111111111 11111234577777777777776777888888889999999999999999998
Q ss_pred cCCCCCCcccCCCCCCCCCCC-cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC
Q 000904 962 HVPSEAPEVVEDNRPPPNWPV-VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA 1040 (1232)
Q Consensus 962 ~~~~e~~~~~~~~~~~~~wp~-~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~ 1040 (1232)
+.+++.+...+.. ...+. .+.|+++|++|+|+++.+++|+|+||+|++||+++|+|+||||||||+++|+|+++|+
T Consensus 615 ~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~ 691 (1522)
T TIGR00957 615 SHEELEPDSIERR---TIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV 691 (1522)
T ss_pred cCccccccccccc---ccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC
Confidence 7654432111111 01111 2479999999999755567999999999999999999999999999999999999999
Q ss_pred ccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCC
Q 000904 1041 GGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120 (1232)
Q Consensus 1041 ~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G 1120 (1232)
+|+|.+|| +++|+||+|.+|++|||+|+.....+++++.+++++.|++.+.+..+|.|++|.++++|
T Consensus 692 ~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g 758 (1522)
T TIGR00957 692 EGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKG 758 (1522)
T ss_pred CcEEEECC-------------EEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCC
Confidence 99999997 69999999999999999999865567788899999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHH---hcCCcEEEEEecChhhhhhcCeEEEEeCCE
Q 000904 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA---EFADCTVITVAHRIPTVMDCTMVLAISDGK 1197 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~---~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~ 1197 (1232)
.+||||||||++||||++++|+|++||||||+||.++++.+.+.+.+ ..+++|+|+||||++.+..||+|++|++|+
T Consensus 759 ~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~ 838 (1522)
T TIGR00957 759 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGK 838 (1522)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCe
Confidence 99999999999999999999999999999999999999999998863 346899999999999999999999999999
Q ss_pred EEEecChhHHHhhcCCHHHHHHHHHH
Q 000904 1198 LAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1198 vvE~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
+++.|++++++++ ++.|+++.+++.
T Consensus 839 i~~~g~~~~l~~~-~~~~~~l~~~~~ 863 (1522)
T TIGR00957 839 ISEMGSYQELLQR-DGAFAEFLRTYA 863 (1522)
T ss_pred EEeeCCHHHHHhc-chhHHHHHHhhc
Confidence 9999999999975 678999887543
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-54 Score=484.24 Aligned_cols=239 Identities=38% Similarity=0.695 Sum_probs=229.3
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
|.|+++|++++|+++.+++|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|.|||+|+..++.+++|+++
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999997656679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000904 1064 GIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI 1143 (1232)
Q Consensus 1064 ~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kI 1143 (1232)
+||||+|.+|++|+++|++|++..+++++|++++.+++.+++..+|.+||+.++++|.+||+|||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998887889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHH
Q 000904 1144 LVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1144 LILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
|||||||++||+.+++.+++.|++.+.++|||+||||++++..||||++|++|+++|+|+|++|+++ .+.|++++++.+
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhcc
Confidence 9999999999999999999999988889999999999999999999999999999999999999996 589999998876
Q ss_pred h
Q 000904 1224 S 1224 (1232)
Q Consensus 1224 ~ 1224 (1232)
.
T Consensus 239 ~ 239 (275)
T cd03289 239 R 239 (275)
T ss_pred h
Confidence 3
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-51 Score=520.99 Aligned_cols=489 Identities=23% Similarity=0.288 Sum_probs=361.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHH
Q 000904 716 FVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYS 795 (1232)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~ 795 (1232)
++..++.-...+.....|.+....+-..++++.++..-..-...+.|+|+|-++.|.+.++....+. .......++++.
T Consensus 253 ~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~-h~~w~~Plqi~~ 331 (1381)
T KOG0054|consen 253 LLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFL-HLLWSAPLQIIL 331 (1381)
T ss_pred HHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3333333333334456677777778888889999988777677889999999999999998654432 222333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHH
Q 000904 796 NLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLID 875 (1232)
Q Consensus 796 ~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d 875 (1232)
.+..+...-..-.++.+.++++...++....+..+..++.....+..-....+|.++|+++||.|+||+.|.++-.+.-+
T Consensus 332 ~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~ 411 (1381)
T KOG0054|consen 332 ALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQ 411 (1381)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHH
Confidence 33332222112222333344444444544444444444444455555667789999999999999999999877655433
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 876 TNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVL-LPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISV 954 (1232)
Q Consensus 876 ~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~-~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sv 954 (1232)
+..+...+. ....-....+......++.++.+.... ...+.+++..+-.++++.-.+..++..+-.....+.+..+|+
T Consensus 412 ~El~~lrk~-~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~ 490 (1381)
T KOG0054|consen 412 KELKLLRKS-AYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSL 490 (1381)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322211111 111111111122222222333333222 335567776776677776667777777777777788889999
Q ss_pred HHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHH
Q 000904 955 ERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGAL 1033 (1232)
Q Consensus 955 eRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L 1033 (1232)
+|+.+|+..+...+...+. .+.-+..-.|+++|.++++.++ .++.|+||||+|++|+.+||||++|||||||+++|
T Consensus 491 ~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~Ai 567 (1381)
T KOG0054|consen 491 KRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAI 567 (1381)
T ss_pred HHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 9999998765443322211 1111233469999999999763 44599999999999999999999999999999999
Q ss_pred hccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCc
Q 000904 1034 FRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLD 1113 (1232)
Q Consensus 1034 ~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLd 1113 (1232)
+|-.+..+|++.++| .++|+||+|.+|+|||||||-...+++++.-.++++.|+|++.++.+|.|=.
T Consensus 568 LGEm~~~sG~v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~ 634 (1381)
T KOG0054|consen 568 LGEMPKLSGSVAVNG-------------SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDL 634 (1381)
T ss_pred hcCcccccceEEEcC-------------eEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCc
Confidence 999999999999999 5999999999999999999997778999999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHH-HHHHHHhcCCcEEEEEecChhhhhhcCeEEE
Q 000904 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMIL-QKTIRAEFADCTVITVAHRIPTVMDCTMVLA 1192 (1232)
Q Consensus 1114 t~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~I-q~~L~~~~~~~TVI~IAHrl~ti~~~DrVlV 1192 (1232)
|+|||+|.|||||||||++||||+.++++|.+||.|-|+||.++.+.| ++.|+...+++|+|.|||.++.+.++|+|+|
T Consensus 635 TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iiv 714 (1381)
T KOG0054|consen 635 TEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIV 714 (1381)
T ss_pred ceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEE
Confidence 999999999999999999999999999999999999999999986554 6678777789999999999999999999999
Q ss_pred EeCCEEEEecChhHHHhhcCCHHHHHHHHHH
Q 000904 1193 ISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1193 L~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
|+||+|+|.|+++||++. ++.|.++.++..
T Consensus 715 l~~G~I~~~Gty~el~~~-~~~~~~l~~~~~ 744 (1381)
T KOG0054|consen 715 LKDGKIVESGTYEELLKS-GGDFAELAHEEE 744 (1381)
T ss_pred ecCCeEecccCHHHHHhc-chhHHHHhhccc
Confidence 999999999999999975 788888865443
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=517.34 Aligned_cols=464 Identities=13% Similarity=0.078 Sum_probs=349.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHH
Q 000904 715 GFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAY 794 (1232)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l 794 (1232)
.++..+..+...........+....++++.+++....++.+||. +.|++.+|+++|++.+.......+..++...+.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii 227 (659)
T TIGR00954 149 SFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVI 227 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555556666677777777777777778888886 78999999999999999888888888888888877
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHH
Q 000904 795 SNLGVLAV-VTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDL 873 (1232)
Q Consensus 795 ~~l~v~~~-~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~ 873 (1232)
..++.+.. .+|.+.++.+....+...+.+.+.+..+++.+......+...+...|.+.|..+|++|+.++...+++.+.
T Consensus 228 ~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~ 307 (659)
T TIGR00954 228 LYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSS 307 (659)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHH
Confidence 77776665 77777665544444555555556655566665556666778889999999999999999998887776666
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcC----CCCcchHHH-HHHHHH---HHHHHHHHHHHH
Q 000904 874 IDTNASPFFQTFAANEWLIQRLETLSAT----VISSAAFCMVLLP----PGTFTPGFI-GMALSY---GLSLNSSLVMSI 941 (1232)
Q Consensus 874 ~d~~~~~~~~~~~~~~wl~~rl~~~~~~----~~~~~~~~~~~~~----~g~~~~g~~-gl~l~~---~~~l~~~l~~~v 941 (1232)
.+...+..........+......++... +........+... .|.++.|.. +..++| ..++..++..+.
T Consensus 308 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~ 387 (659)
T TIGR00954 308 FYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLM 387 (659)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444444333333333333333221 1111111112221 266777653 334444 456678888888
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCC-------cccC--CC----C-----C--CCCCCCcceEEEEeeEeEecCCCCc
Q 000904 942 QNQCTLANYIISVERLNQYMHVPSEAP-------EVVE--DN----R-----P--PPNWPVVGKVDICDLQIRYRPDSPL 1001 (1232)
Q Consensus 942 ~~~~~~e~~~~sveRi~~~~~~~~e~~-------~~~~--~~----~-----~--~~~wp~~G~I~~~nvs~~Y~~~~~~ 1001 (1232)
....++.....+.+|+.++.+.+++.. ...+ +. . + .......+.|+++|++++|++ .++
T Consensus 388 ~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~-~~~ 466 (659)
T TIGR00954 388 LAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN-GDV 466 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC-CCe
Confidence 899999999999999999886432210 0000 00 0 0 000012367999999999963 346
Q ss_pred cceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhcc
Q 000904 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL 1081 (1232)
Q Consensus 1002 vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NL 1081 (1232)
+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|+ |++++||||+|.+|++|+++|+
T Consensus 467 il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni 535 (659)
T TIGR00954 467 LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQI 535 (659)
T ss_pred eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999875 6789999999999999999999
Q ss_pred CCC--------CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCC
Q 000904 1082 DPL--------SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI 1153 (1232)
Q Consensus 1082 dp~--------~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~L 1153 (1232)
... .+.++++++++++.+++.+++.+ |.|+|+..+ .+.+||||||||++||||++++|++||||||||+|
T Consensus 536 ~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~L 613 (659)
T TIGR00954 536 IYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAV 613 (659)
T ss_pred hcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 632 23578899999999999998876 899999876 56799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeC
Q 000904 1154 DNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISD 1195 (1232)
Q Consensus 1154 D~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~ 1195 (1232)
|+++++.+++.+++ .++|+|+||||++++..||+|++|+.
T Consensus 614 D~~~~~~l~~~l~~--~~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 614 SVDVEGYMYRLCRE--FGITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred CHHHHHHHHHHHHH--cCCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999999999987 38999999999999999999999973
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=496.32 Aligned_cols=471 Identities=22% Similarity=0.332 Sum_probs=309.4
Q ss_pred ceEEEEeeEEEecCCCC-CCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCc----cccccccc--ccccccc
Q 000904 626 HVISIKSASFSWEESSS-KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT----QGTILQNS--WLAANVE 698 (1232)
Q Consensus 626 ~~I~i~~~sfsw~~~~~-~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~----~G~v~~~~--~l~~~~~ 698 (1232)
..++++|++.+|..... .++++||||+|.+||.+||||+|||||||+.++|+|..|+. +|+|.-+. .+....
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~- 82 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE- 82 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH-
Confidence 47999999999976532 25999999999999999999999999999999999999987 57663221 000000
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCC-CCHHHHHHH----------
Q 000904 699 NPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDS-TPLGRVLSR---------- 767 (1232)
Q Consensus 699 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~-~~~G~ilnR---------- 767 (1232)
+..+.++.+-..-+++.||+-++. ...|+.+..
T Consensus 83 ------------------------------------~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~ 126 (539)
T COG1123 83 ------------------------------------REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSR 126 (539)
T ss_pred ------------------------------------HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccH
Confidence 000111111111122222222221 122222211
Q ss_pred ------HHhhHHHhhh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 768 ------VSSDLSIVDL-------DVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMR 834 (1232)
Q Consensus 768 ------~s~D~~~vd~-------~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~r 834 (1232)
.-.-+..+.. ..|.. +++....-..+++.....|.+++++.|...++...|...++..+++++
T Consensus 127 ~ea~~~a~elL~~Vgl~~~~~~~~yPhe----LSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~ 202 (539)
T COG1123 127 AEARKRAVELLEQVGLPDPERRDRYPHQ----LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQR 202 (539)
T ss_pred HHHHHHHHHHHHHcCCCChhhhccCCcc----cCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHH
Confidence 1111111111 12222 222333334556666778899999999999999999999999999998
Q ss_pred HhhhhhHHHHHHHHHHHhhhHH-HhhcchHHH-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000904 835 LNGTTKSLVANHLAESIAGAMT-IRAFEEEDR-FFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVL 912 (1232)
Q Consensus 835 l~~~~~s~l~~~~~E~l~g~~t-Iraf~~~~~-f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~ 912 (1232)
..+.+-- +.+|-.+.++.+.. |-.....+. -.-.-.+.++..+.+|...
T Consensus 203 e~g~a~l-~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~---------------------------- 253 (539)
T COG1123 203 ELGMAVL-FITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRG---------------------------- 253 (539)
T ss_pred HcCcEEE-EEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHH----------------------------
Confidence 7766532 22333333321110 000000000 0000111222222222100
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeE
Q 000904 913 LPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQ 992 (1232)
Q Consensus 913 ~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs 992 (1232)
.+ .+ .|...............-+...-++++|++
T Consensus 254 ---------Ll----------------------------~a---------~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~ 287 (539)
T COG1123 254 ---------LL----------------------------AA---------VPRLGDEKIIRLPRRGPLRAEPLLSVRNLS 287 (539)
T ss_pred ---------HH----------------------------hh---------CCCcccccccccccccccccCceeEeeeee
Confidence 00 00 111100000000000000122358899999
Q ss_pred eEecC---------CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCee--CCCCChHhhhc
Q 000904 993 IRYRP---------DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGID--ISKLGLHDLRS 1061 (1232)
Q Consensus 993 ~~Y~~---------~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~d--I~~i~l~~LR~ 1061 (1232)
.+|.. ....+++||||++++||++||||+||||||||.++|+|+++|++|+|.++|.| .+.-....+|+
T Consensus 288 k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~ 367 (539)
T COG1123 288 KRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRR 367 (539)
T ss_pred eeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhh
Confidence 99973 12468999999999999999999999999999999999999999999999977 33334667889
Q ss_pred cEEEEccCCCCC---cccHHhccC-CCCC-------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1062 RFGIIPQDPTLF---NGTVRYNLD-PLSQ-------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1062 ~i~iVpQdP~LF---~gTIr~NLd-p~~~-------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
++.+|+|||+-. ..||+++|. |... ...+.+.+.|++++|.+... ...++.||||||||
T Consensus 368 ~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l----------~ryP~elSGGQrQR 437 (539)
T COG1123 368 RIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFL----------DRYPHELSGGQRQR 437 (539)
T ss_pred heEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHH----------hcCchhcCcchhHH
Confidence 999999999632 559998884 3321 12245788899999985322 22356899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
+||||||..+|++||+|||||+||..+.+.+.+.|.+.- -+.|.|+||||+..++. ||||+||++|+|||.|+.+++
T Consensus 438 vaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v 517 (539)
T COG1123 438 VAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKV 517 (539)
T ss_pred HHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999998887632 37999999999999998 999999999999999999999
Q ss_pred HhhcCCHHHHHHHHH
Q 000904 1208 MKREGSLFGQLVREY 1222 (1232)
Q Consensus 1208 l~~~~~~f~~l~~~~ 1222 (1232)
++++...|.+..-+.
T Consensus 518 ~~~p~h~Ytr~L~~a 532 (539)
T COG1123 518 FENPQHPYTRKLLAA 532 (539)
T ss_pred hcCCCChHHHHHHHh
Confidence 999888887665543
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=533.79 Aligned_cols=481 Identities=18% Similarity=0.202 Sum_probs=347.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHH
Q 000904 715 GFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAY 794 (1232)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l 794 (1232)
.++..++.....+.....+.+....+...+++++++.+...+++.++|+++|+++.|++.+....... ..+....+.++
T Consensus 132 ~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~ 210 (1490)
T TIGR01271 132 FIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVI 210 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33444444444555556777777788888899999999999999999999999999999998754432 22333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHH
Q 000904 795 SNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLI 874 (1232)
Q Consensus 795 ~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~ 874 (1232)
..+.++.....+..++.+.++++...++.+..+.....++..........+...|.++|+++||.|++|+.|.++..+..
T Consensus 211 ~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R 290 (1490)
T TIGR01271 211 LLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIR 290 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHH
Confidence 44444433333333333333333344444444444444444445555677889999999999999999999987776655
Q ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000904 875 DTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLV-MSIQNQCTLANYIIS 953 (1232)
Q Consensus 875 d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~-~~v~~~~~~e~~~~s 953 (1232)
+...+..........+... +......+..+..+..+....+ .+++.+-.++++...+..++. .+......+....++
T Consensus 291 ~~El~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s 368 (1490)
T TIGR01271 291 QDELKLTRKIAYLRYFYSS-AFFFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGA 368 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433322211111111111 1111111111112112222123 455555555555555544443 455667777788999
Q ss_pred HHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCC--------------------------------CCc
Q 000904 954 VERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPD--------------------------------SPL 1001 (1232)
Q Consensus 954 veRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~--------------------------------~~~ 1001 (1232)
++|+.+|+..++..+.. . + +....|+++|++|.|..+ .++
T Consensus 369 ~~RI~~fL~~~e~~~~~---~----~-~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 440 (1490)
T TIGR01271 369 ITKIQDFLCKEEYKTLE---Y----N-LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTP 440 (1490)
T ss_pred HHHHHHHhcCccccccc---c----c-CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCc
Confidence 99999999765432110 0 0 012347778888777321 135
Q ss_pred cceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhcc
Q 000904 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL 1081 (1232)
Q Consensus 1002 vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NL 1081 (1232)
+|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+|| +++|+||+|.+|++|||+|+
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI 507 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNI 507 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHH
Confidence 89999999999999999999999999999999999999999999998 59999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHH
Q 000904 1082 DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMIL 1161 (1232)
Q Consensus 1082 dp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~I 1161 (1232)
.....+++++..++++.|+|.+.+..+|.|.+|.+|++|.+||||||||++||||++++|+|++||||||+||.++.+.|
T Consensus 508 ~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i 587 (1490)
T TIGR01271 508 IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI 587 (1490)
T ss_pred HhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 84445666778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHH
Q 000904 1162 QKT-IRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1162 q~~-L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
.+. +++..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. ++.|.+...
T Consensus 588 ~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~ 646 (1490)
T TIGR01271 588 FESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK-RPDFSSLLL 646 (1490)
T ss_pred HHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc-ChHHHHHHh
Confidence 874 6666679999999999999999999999999999999999999875 456666653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=523.26 Aligned_cols=489 Identities=17% Similarity=0.246 Sum_probs=360.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccC--CCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHH
Q 000904 716 FVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYD--STPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNA 793 (1232)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd--~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~ 793 (1232)
++..++.....+.....+.+....+...+++++++.+...+. ..+.|+++|.++.|++.+...... +..+....+.+
T Consensus 296 ~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~l 374 (1560)
T PTZ00243 296 LIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQY-CMYLWSSPMVL 374 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHH
Confidence 334444444445556677777778888999999998876665 467999999999999999876533 34445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHH
Q 000904 794 YSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDL 873 (1232)
Q Consensus 794 l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~ 873 (1232)
+..+.++.....+..++.+.++++...++.+..+.....++.....+........|.++|+++||.+++|+.|.++..+.
T Consensus 375 i~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~ 454 (1560)
T PTZ00243 375 LLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDK 454 (1560)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444444444444555555555555555555544444555566778899999999999999999998887665
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 874 IDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIIS 953 (1232)
Q Consensus 874 ~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~s 953 (1232)
-+...+..........+... +......++..+.+..+....+.++++.+-.++++...+..++..+...+..+....+|
T Consensus 455 R~~El~~l~~~~~~~~~~~~-~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS 533 (1560)
T PTZ00243 455 RARELRYLRDVQLARVATSF-VNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVS 533 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44332222111111111111 11111111111122222233678999999988888888888888888889999999999
Q ss_pred HHHHHhhccCCCCCCc------cc--------C--C-----CC-------C---------------------------CC
Q 000904 954 VERLNQYMHVPSEAPE------VV--------E--D-----NR-------P---------------------------PP 978 (1232)
Q Consensus 954 veRi~~~~~~~~e~~~------~~--------~--~-----~~-------~---------------------------~~ 978 (1232)
.+|+.+|++.++..+. .. . . .. | +.
T Consensus 534 ~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (1560)
T PTZ00243 534 IKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPT 613 (1560)
T ss_pred HHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence 9999999875431100 00 0 0 00 0 00
Q ss_pred CCCCcceEEEEeeEeEec--------------------------------------CCCCccceeeeEEEeCCcEEEEEC
Q 000904 979 NWPVVGKVDICDLQIRYR--------------------------------------PDSPLVLKGISCTFEGGHKIGIVG 1020 (1232)
Q Consensus 979 ~wp~~G~I~~~nvs~~Y~--------------------------------------~~~~~vL~~vsl~I~~GekvgIVG 1020 (1232)
.++..+.+.++|+++.++ .+..++|+|+||+|++||+++|+|
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG 693 (1560)
T PTZ00243 614 KRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLG 693 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEEC
Confidence 011123466777766531 123458999999999999999999
Q ss_pred CCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcC
Q 000904 1021 RTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCH 1100 (1232)
Q Consensus 1021 rtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~ 1100 (1232)
+||||||||+++|.|+++|++|+|.++ ++|+|+||+|.+|++||++|+..+..++++++.++++.|+
T Consensus 694 ~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~ 760 (1560)
T PTZ00243 694 ATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQ 760 (1560)
T ss_pred CCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhh
Confidence 999999999999999999999999864 4799999999999999999998766666677889999999
Q ss_pred CcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHH-HHHHhcCCcEEEEEec
Q 000904 1101 LGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQK-TIRAEFADCTVITVAH 1179 (1232)
Q Consensus 1101 L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~-~L~~~~~~~TVI~IAH 1179 (1232)
+.+.++.+|.|+++.++++|.+||||||||++||||++++|+|++||||||+||.++.+.+.+ .+....+++|+|+|||
T Consensus 761 l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH 840 (1560)
T PTZ00243 761 LEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATH 840 (1560)
T ss_pred hHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999998776654 4555557899999999
Q ss_pred ChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHH
Q 000904 1180 RIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1180 rl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~ 1221 (1232)
+++.+..||+|++|++|++++.|++++++++ +.|.++..+
T Consensus 841 ~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~--~~~~~~~~~ 880 (1560)
T PTZ00243 841 QVHVVPRADYVVALGDGRVEFSGSSADFMRT--SLYATLAAE 880 (1560)
T ss_pred CHHHHHhCCEEEEEECCEEEEecCHHHHHhC--hHHHHHHHh
Confidence 9999999999999999999999999999864 568887764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-50 Score=460.42 Aligned_cols=229 Identities=21% Similarity=0.352 Sum_probs=206.2
Q ss_pred CCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCC
Q 000904 978 PNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDIS 1052 (1232)
Q Consensus 978 ~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~ 1052 (1232)
.+||..|.|+++|++++|+++.+++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.|||+|+.
T Consensus 73 ~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 73 EDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred CCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4699999999999999997555679999999999999999999999999999999999997 57999999999997
Q ss_pred --CCChHhhhccEEEEccCCCCCcccHHhccC--C-CCCCCHHH-----HHHHHHHcCCcHHHHhhccCCcccccCCCCC
Q 000904 1053 --KLGLHDLRSRFGIIPQDPTLFNGTVRYNLD--P-LSQHTDQE-----IWEVLAKCHLGEAVREKENGLDSLVVEDGSN 1122 (1232)
Q Consensus 1053 --~i~l~~LR~~i~iVpQdP~LF~gTIr~NLd--p-~~~~sd~e-----I~~aL~~~~L~~~i~~~p~gLdt~v~e~G~n 1122 (1232)
++++.++|++++||||+|.+|++|+++|++ | +..+++++ +.++++.+++.+ ++++.+++.|.+
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~l~~~~~~~~~~ 225 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD-------EVKDDLDKAGNA 225 (329)
T ss_pred ccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-------hhhhhhhCCccc
Confidence 456778999999999999999999999998 3 22344444 456778887653 456778899999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 000904 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1123 LSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~ 1201 (1232)
||||||||+|||||++++|+||+|||||++||+++.+.+++.|++.++++|+|+||||++++.+ ||||+||++|+|+|.
T Consensus 226 LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999998889999999999999998 999999999999999
Q ss_pred cChhHHHhhcCC
Q 000904 1202 DEPMKLMKREGS 1213 (1232)
Q Consensus 1202 g~p~~Ll~~~~~ 1213 (1232)
|+|+++++++..
T Consensus 306 g~~~~l~~~~~~ 317 (329)
T PRK14257 306 GETKTIFIHPKN 317 (329)
T ss_pred CCHHHHhcCCCc
Confidence 999999987654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=430.00 Aligned_cols=222 Identities=30% Similarity=0.483 Sum_probs=187.6
Q ss_pred eEEEEeeEeEecC---------CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC
Q 000904 985 KVDICDLQIRYRP---------DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG 1055 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~---------~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~ 1055 (1232)
-++.+|+.+.|+- +.-.+.+||||++++||.+||||+||||||||-++|+|++++. |+|.++|.||...+
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 5888999998841 1124789999999999999999999999999999999999876 99999999999887
Q ss_pred hHh---hhccEEEEccCCC--CC-cccHHhccC-------CCC--CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCC
Q 000904 1056 LHD---LRSRFGIIPQDPT--LF-NGTVRYNLD-------PLS--QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120 (1232)
Q Consensus 1056 l~~---LR~~i~iVpQdP~--LF-~gTIr~NLd-------p~~--~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G 1120 (1232)
.++ +|+++.+|+|||+ |- ..||-+-+. |.. ...|+.+.+||+.+||+...... -+
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~R----------YP 424 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNR----------YP 424 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhc----------CC
Confidence 554 6899999999995 21 224443332 111 12356789999999998766554 25
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE--FADCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
+.+|||||||++||||++-+|++++||||||+||..-...|.+.|++. ..+-+-++||||+..|+. ||+|+||.+||
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~Gk 504 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCE
Confidence 689999999999999999999999999999999999999998888863 347899999999999988 99999999999
Q ss_pred EEEecChhHHHhhcCCHHHH
Q 000904 1198 LAEYDEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1198 vvE~g~p~~Ll~~~~~~f~~ 1217 (1232)
|||.|+.++++++|...|.+
T Consensus 505 iVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 505 IVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred EeeeCCHHHHhcCCCcHHHH
Confidence 99999999999999887754
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-49 Score=492.05 Aligned_cols=225 Identities=24% Similarity=0.336 Sum_probs=189.2
Q ss_pred eEEEEeeEeEecCC---------CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC
Q 000904 985 KVDICDLQIRYRPD---------SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG 1055 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~---------~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~ 1055 (1232)
-++++|++++|+.. ...+|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 48999999999521 135999999999999999999999999999999999999999999999999998775
Q ss_pred hH---hhhccEEEEccCC--CCCc-ccHHhccCC-C---CCCC----HHHHHHHHHHcCCc-HHHHhhccCCcccccCCC
Q 000904 1056 LH---DLRSRFGIIPQDP--TLFN-GTVRYNLDP-L---SQHT----DQEIWEVLAKCHLG-EAVREKENGLDSLVVEDG 1120 (1232)
Q Consensus 1056 l~---~LR~~i~iVpQdP--~LF~-gTIr~NLdp-~---~~~s----d~eI~~aL~~~~L~-~~i~~~p~gLdt~v~e~G 1120 (1232)
.. .+|++|+||||+| .++. -||.+|+.. . +... ++++.++|+.+++. +..... .
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----------~ 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY-----------P 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-----------c
Confidence 43 4577899999999 3664 599999852 1 1111 24577888888885 333222 3
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
.+||||||||++|||||+.+|++|||||||++||..+.+.+.+.|++.. .+.|||+||||++.+.+ ||||++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 5799999999999999999999999999999999999999999998743 37899999999999987 99999999999
Q ss_pred EEEecChhHHHhhcCCHHH-HHHH
Q 000904 1198 LAEYDEPMKLMKREGSLFG-QLVR 1220 (1232)
Q Consensus 1198 vvE~g~p~~Ll~~~~~~f~-~l~~ 1220 (1232)
|+|.|++++++.++...|. .++.
T Consensus 542 iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred EEEecCHHHHhcCCCCHHHHHHHh
Confidence 9999999999987655554 4544
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=479.72 Aligned_cols=217 Identities=26% Similarity=0.435 Sum_probs=183.3
Q ss_pred eEEEEeeEeEecC---------CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC
Q 000904 985 KVDICDLQIRYRP---------DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG 1055 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~---------~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~ 1055 (1232)
.++++|++++|.. +...+|+|+||+|++||++||+|+||||||||+++|.|+++ ++|+|.+||.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 4899999999952 12469999999999999999999999999999999999984 8999999999998776
Q ss_pred hHh---hhccEEEEccCCC--CCc-ccHHhccCCC----C-CC----CHHHHHHHHHHcCCcH-HHHhhccCCcccccCC
Q 000904 1056 LHD---LRSRFGIIPQDPT--LFN-GTVRYNLDPL----S-QH----TDQEIWEVLAKCHLGE-AVREKENGLDSLVVED 1119 (1232)
Q Consensus 1056 l~~---LR~~i~iVpQdP~--LF~-gTIr~NLdp~----~-~~----sd~eI~~aL~~~~L~~-~i~~~p~gLdt~v~e~ 1119 (1232)
.++ +|++++|+||+|. +|. .|+++|+... . .. .++++.++|+.+++.+ .... .
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~ 422 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHR-----------Y 422 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhc-----------C
Confidence 543 4778999999983 665 5999998531 1 01 1345778888888863 2222 2
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCC
Q 000904 1120 GSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDG 1196 (1232)
Q Consensus 1120 G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G 1196 (1232)
..+||||||||++|||||+.+|++|||||||++||..+.+.+.+.|++.. .++|||+||||++.+.+ ||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 35799999999999999999999999999999999999999999998753 37899999999999987 9999999999
Q ss_pred EEEEecChhHHHhhcCC
Q 000904 1197 KLAEYDEPMKLMKREGS 1213 (1232)
Q Consensus 1197 ~vvE~g~p~~Ll~~~~~ 1213 (1232)
++++.|+++++++++..
T Consensus 503 ~i~~~~~~~~~~~~~~~ 519 (529)
T PRK15134 503 EVVEQGDCERVFAAPQQ 519 (529)
T ss_pred EEEEEcCHHHHhcCCCC
Confidence 99999999999876543
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=400.21 Aligned_cols=217 Identities=29% Similarity=0.409 Sum_probs=193.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC-CChHhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK-LGLHDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~-i~l~~LR~~i 1063 (1232)
-|+++|++.+|.. ..||+|||++|++||.+.|+||||||||||+++|.||.+|++|+|.|||.++.. .++..+|+++
T Consensus 2 mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 3899999999974 469999999999999999999999999999999999999999999999987743 3788999999
Q ss_pred EEEccCCCCCcc-cHHhccCCCC----CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLS----QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~----~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
|+|+|+..||.. |+.+|+.... ..+ ++...+.|+++||.|.....|. +||||||||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHHH
Confidence 999999999965 9999985211 122 3345678999999988777664 7999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcC
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~ 1212 (1232)
|||..+|+++++|||||+||++.-..+.+.+++.. .|.|+|+|||.+.+.++ +|||+.||+|+++|.|+|++++.++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999999999999999999999999999998855 47899999999999999 89999999999999999999999876
Q ss_pred CH
Q 000904 1213 SL 1214 (1232)
Q Consensus 1213 ~~ 1214 (1232)
..
T Consensus 229 ~~ 230 (240)
T COG1126 229 SE 230 (240)
T ss_pred CH
Confidence 43
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=411.59 Aligned_cols=227 Identities=26% Similarity=0.428 Sum_probs=197.8
Q ss_pred EEEEeeEeEecCC---CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC---hHhh
Q 000904 986 VDICDLQIRYRPD---SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG---LHDL 1059 (1232)
Q Consensus 986 I~~~nvs~~Y~~~---~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~L 1059 (1232)
|+++||++.|... ...+|+||||+|++||..||||+||||||||++++.||-+|++|+|.+||.|+..++ ++.+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999752 346999999999999999999999999999999999999999999999999987775 6777
Q ss_pred hccEEEEccCCCCCc-ccHHhccC-CCC--CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1060 RSRFGIIPQDPTLFN-GTVRYNLD-PLS--QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1060 R~~i~iVpQdP~LF~-gTIr~NLd-p~~--~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
|++||+|+|++.|++ -||.+|+. |.. ..+. +++.+.|+.+||.|....-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 899999999999996 79999996 432 2333 44678899999887655544 58999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE--FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
+|||||..+|+||+.|||||+||++|-+.|.+.|++. .-|-|+++|||-++.|++ ||||.||++|+++|.|+-.+++
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999999999999999999988763 247899999999999999 9999999999999999999999
Q ss_pred hhcCC-HHHHHHHHHH
Q 000904 1209 KREGS-LFGQLVREYW 1223 (1232)
Q Consensus 1209 ~~~~~-~f~~l~~~~~ 1223 (1232)
.+|.. .=++++.+..
T Consensus 231 ~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 231 ANPKHAITQEFIGETL 246 (339)
T ss_pred cCcchHHHHHHHHhhc
Confidence 98854 4455555443
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=462.95 Aligned_cols=219 Identities=26% Similarity=0.429 Sum_probs=179.5
Q ss_pred eEEEEeeEeEecC---CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEEC-Ce---eCCCCC--
Q 000904 985 KVDICDLQIRYRP---DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD-GI---DISKLG-- 1055 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~---~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~ID-G~---dI~~i~-- 1055 (1232)
.++++|++++|.. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++ |. ++...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999952 23469999999999999999999999999999999999999999999996 64 344332
Q ss_pred -hHhhhccEEEEccCCCCCc-ccHHhccCC-CC-CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhH
Q 000904 1056 -LHDLRSRFGIIPQDPTLFN-GTVRYNLDP-LS-QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1056 -l~~LR~~i~iVpQdP~LF~-gTIr~NLdp-~~-~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
...+|++++|+||+|.+|. .|+++|+.. .. .. .++++.++|+.+++.+.-. +........+|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKA------EEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccc------hhhhhCChhhCCHHH
Confidence 2356778999999998886 499999852 11 11 2345677888888753100 000112345799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p 1204 (1232)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .+.|||+||||++.+.+ ||+|++|++|++++.|+|
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998753 37899999999999987 999999999999999999
Q ss_pred hHHHh
Q 000904 1205 MKLMK 1209 (1232)
Q Consensus 1205 ~~Ll~ 1209 (1232)
+++++
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 98865
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=462.35 Aligned_cols=213 Identities=22% Similarity=0.314 Sum_probs=177.4
Q ss_pred eEEEEeeEeEecC-CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-CCccEEEECCeeCCCCCh-Hhhhc
Q 000904 985 KVDICDLQIRYRP-DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-PAGGKILVDGIDISKLGL-HDLRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~-~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-p~~G~I~IDG~dI~~i~l-~~LR~ 1061 (1232)
.++++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.|+...+. +..|.
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999942 23469999999999999999999999999999999999999 599999999999875543 34577
Q ss_pred cEEEEccCC---CCC-cccHHhccCCC--CC------CC----HHHHHHHHHHcCCc-HHHHhhccCCcccccCCCCCCC
Q 000904 1062 RFGIIPQDP---TLF-NGTVRYNLDPL--SQ------HT----DQEIWEVLAKCHLG-EAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1062 ~i~iVpQdP---~LF-~gTIr~NLdp~--~~------~s----d~eI~~aL~~~~L~-~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
+++|+||+| .+| ..|+.+|+... .. .+ .+++.++++.+++. +.. ......||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LS 407 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASP-----------ELAIARLS 407 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCc-----------ccccccCC
Confidence 899999997 355 45999998621 11 11 13466777777764 221 22345799
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
||||||++||||++.+|+||||||||++||..+.+.+.+.|++.. +++|||+||||++.+.+ ||++++|++|+++..|
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999988742 47899999999999987 9999999999999999
Q ss_pred ChhHHH
Q 000904 1203 EPMKLM 1208 (1232)
Q Consensus 1203 ~p~~Ll 1208 (1232)
+++++.
T Consensus 488 ~~~~~~ 493 (506)
T PRK13549 488 INHNLT 493 (506)
T ss_pred ccccCC
Confidence 988774
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=462.96 Aligned_cols=207 Identities=21% Similarity=0.328 Sum_probs=173.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh-HhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL-HDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-~~LR~~i 1063 (1232)
.++++|++++|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+. +.+|+++
T Consensus 265 ~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 599999998763 38999999999999999999999999999999999999999999999999876543 4567889
Q ss_pred EEEccCC---CCCc-ccHHhccCCCCC------------CC----HHHHHHHHHHcCCc-HHHHhhccCCcccccCCCCC
Q 000904 1064 GIIPQDP---TLFN-GTVRYNLDPLSQ------------HT----DQEIWEVLAKCHLG-EAVREKENGLDSLVVEDGSN 1122 (1232)
Q Consensus 1064 ~iVpQdP---~LF~-gTIr~NLdp~~~------------~s----d~eI~~aL~~~~L~-~~i~~~p~gLdt~v~e~G~n 1122 (1232)
+|+||+| .+|. -|+++|+..... .. .+++.++++..++. +.. ......
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~ 409 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSV-----------NQNITE 409 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCc-----------cCcccc
Confidence 9999985 4665 499999863210 01 12456777777663 221 223457
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 000904 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1123 LSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE 1200 (1232)
||||||||++|||||+++|+||||||||++||..+.+.+.+.|++. .++.|||+||||++.+.. ||+|++|++|++++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999874 347899999999999876 99999999999999
Q ss_pred ecChhH
Q 000904 1201 YDEPMK 1206 (1232)
Q Consensus 1201 ~g~p~~ 1206 (1232)
.+++.+
T Consensus 490 ~~~~~~ 495 (510)
T PRK09700 490 ILTNRD 495 (510)
T ss_pred EecCcc
Confidence 887633
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=452.16 Aligned_cols=200 Identities=20% Similarity=0.326 Sum_probs=173.8
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +.+++
T Consensus 319 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 385 (530)
T PRK15064 319 ALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANIG 385 (530)
T ss_pred eEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEEE
Confidence 6999999999963 4599999999999999999999999999999999999999999999998 35799
Q ss_pred EEccCCC--CC-cccHHhccCCCC--CCCHHHHHHHHHHcCCc-HHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc
Q 000904 1065 IIPQDPT--LF-NGTVRYNLDPLS--QHTDQEIWEVLAKCHLG-EAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL 1138 (1232)
Q Consensus 1065 iVpQdP~--LF-~gTIr~NLdp~~--~~sd~eI~~aL~~~~L~-~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL 1138 (1232)
|+||+|. ++ ..|+++|+..+. ...++++.++|+..++. +.... ...+||||||||++||||++
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGq~qrv~la~al~ 454 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKK-----------SVKVLSGGEKGRMLFGKLMM 454 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcC-----------cccccCHHHHHHHHHHHHHh
Confidence 9999984 44 359999985332 23456788899998884 33222 24589999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEE-EecChhHHHhh
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLA-EYDEPMKLMKR 1210 (1232)
Q Consensus 1139 ~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv-E~g~p~~Ll~~ 1210 (1232)
++|+||||||||++||+.+.+.+.+.|++. ++|||+|||+++.+.. ||+|++|++|+++ +.|++.++++.
T Consensus 455 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 455 QKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999999999999999999999874 5699999999999987 9999999999998 77899888765
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=411.34 Aligned_cols=240 Identities=51% Similarity=0.840 Sum_probs=223.1
Q ss_pred CcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhc
Q 000904 982 VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061 (1232)
Q Consensus 982 ~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~ 1061 (1232)
..|.|+++|++++|+.....+|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+..++|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 35789999999999653356999999999999999999999999999999999999999999999999999988889999
Q ss_pred cEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
+++|+||+|.+|++|+++|+++.....+++++++++.+++.+.+..+|.|+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999875444567788999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHH
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~ 1221 (1232)
++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||||++|++|++++.|+++++.+++++.|+.++.+
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhc
Confidence 99999999999999999999999988666899999999999999999999999999999999999998877888887754
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-46 Score=455.67 Aligned_cols=207 Identities=20% Similarity=0.326 Sum_probs=174.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh-HhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL-HDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-~~LR~~i 1063 (1232)
.++++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+|+++
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 489999984 37999999999999999999999999999999999999999999999999987664 3467789
Q ss_pred EEEccCC---CCC-cccHHhccCCC-----CC----CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChh
Q 000904 1064 GIIPQDP---TLF-NGTVRYNLDPL-----SQ----HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMG 1126 (1232)
Q Consensus 1064 ~iVpQdP---~LF-~gTIr~NLdp~-----~~----~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgG 1126 (1232)
+|+||+| .+| ..|+++|+... .. .+ ++++.++++.+++.+ .........||||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG 399 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT----------PSMEQAIGLLSGG 399 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC----------CCccCchhhCCHH
Confidence 9999997 344 46999998631 00 11 234667777776631 1122334579999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p 1204 (1232)
||||++|||||+.+|+||||||||++||..+.+.+.+.|++.. +++|||+||||++.+.+ ||+|++|++|++++.+++
T Consensus 400 ekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~ 479 (501)
T PRK10762 400 NQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTR 479 (501)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999999998753 47899999999999987 999999999999999998
Q ss_pred hHHH
Q 000904 1205 MKLM 1208 (1232)
Q Consensus 1205 ~~Ll 1208 (1232)
+++.
T Consensus 480 ~~~~ 483 (501)
T PRK10762 480 EQAT 483 (501)
T ss_pred ccCC
Confidence 8764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=454.97 Aligned_cols=208 Identities=19% Similarity=0.292 Sum_probs=174.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC-hHhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG-LHDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~LR~~i 1063 (1232)
.++++|++++ .+++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .+..|+++
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 5889999842 4899999999999999999999999999999999999999999999999987543 34567889
Q ss_pred EEEccCCC---CC-cccHHhccCCCC--C-------CC----HHHHHHHHHHcCCc-HHHHhhccCCcccccCCCCCCCh
Q 000904 1064 GIIPQDPT---LF-NGTVRYNLDPLS--Q-------HT----DQEIWEVLAKCHLG-EAVREKENGLDSLVVEDGSNWSM 1125 (1232)
Q Consensus 1064 ~iVpQdP~---LF-~gTIr~NLdp~~--~-------~s----d~eI~~aL~~~~L~-~~i~~~p~gLdt~v~e~G~nLSg 1125 (1232)
+|+||+|. +| ..|+.+|+.... . .. ++++.++|+.+++. +. ......+|||
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LSg 399 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPS-----------REQLIMNLSG 399 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCC-----------ccCccccCCH
Confidence 99999983 55 579999986311 0 01 23466777777663 22 1223458999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1126 GQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1126 GQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
|||||++|||||+.+|++|||||||++||..+.+.+.+.|++.. .+.|||+||||++.+.. ||++++|++|++++.|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999997743 47899999999999977 99999999999999999
Q ss_pred hhHHHh
Q 000904 1204 PMKLMK 1209 (1232)
Q Consensus 1204 p~~Ll~ 1209 (1232)
+++...
T Consensus 480 ~~~~~~ 485 (501)
T PRK11288 480 REQATE 485 (501)
T ss_pred cccCCH
Confidence 887653
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-46 Score=454.79 Aligned_cols=213 Identities=22% Similarity=0.285 Sum_probs=175.1
Q ss_pred eEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-CccEEEECCeeCCCCCh-Hhhhc
Q 000904 985 KVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-AGGKILVDGIDISKLGL-HDLRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-~~G~I~IDG~dI~~i~l-~~LR~ 1061 (1232)
.++++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 49999999999432 23599999999999999999999999999999999999995 89999999999875443 56788
Q ss_pred cEEEEccCC---CCCc-ccHHhccCCC-----CC---CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCCh
Q 000904 1062 RFGIIPQDP---TLFN-GTVRYNLDPL-----SQ---HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSM 1125 (1232)
Q Consensus 1062 ~i~iVpQdP---~LF~-gTIr~NLdp~-----~~---~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSg 1125 (1232)
+++|+||++ .+|. .|+++|+... .. .. .+++.++|+++++.+. ..+ .....|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~----~~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA------SPF----LPIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC------Ccc----CccccCCH
Confidence 999999997 3565 5999998641 11 11 2346677777776321 112 22357999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1126 GQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1126 GQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
|||||++|||||+++|++|||||||++||..+.+.+.+.|++.. ++.|||+||||++.+.+ ||+|++|++|+++...+
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999998888743 47899999999999987 89999999999998776
Q ss_pred hhHH
Q 000904 1204 PMKL 1207 (1232)
Q Consensus 1204 p~~L 1207 (1232)
..++
T Consensus 487 ~~~~ 490 (500)
T TIGR02633 487 NHAL 490 (500)
T ss_pred cccC
Confidence 5543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-46 Score=379.02 Aligned_cols=219 Identities=25% Similarity=0.415 Sum_probs=198.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCc-----cEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG-----GKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~-----G~I~IDG~dI~~--i~l~ 1057 (1232)
.++++|+++-|. ...+|+|||++|++++.+|++|||||||||++++|.|+.+... |+|.+||.||-+ ++.-
T Consensus 7 ~~~~~~l~~yYg--~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 7 AIEVRDLNLYYG--DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred eeEecceeEEEC--chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 589999999996 4569999999999999999999999999999999999999875 999999999966 5789
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCC-------CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLS-------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~-------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
+||+++|+|+|.|.-|..||.+|+...- ..-|+-+.++|+++.|||.|.+. | .+.+..|||||+||
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr---L----~~sa~~LSGGQQQR 157 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR---L----HKSALGLSGGQQQR 157 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH---h----hCCccCCChhHHHH
Confidence 9999999999999999999999996321 12245688999999999998764 2 34567899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||||.-+|+||+||||||+||+-+-..|.+.|.+..++-|||+|||.+.-... +|+...+..|+++|+|+.++++.
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 99999999999999999999999999999999999998889999999999998877 89999999999999999999998
Q ss_pred hcC
Q 000904 1210 REG 1212 (1232)
Q Consensus 1210 ~~~ 1212 (1232)
+|.
T Consensus 238 ~P~ 240 (253)
T COG1117 238 NPK 240 (253)
T ss_pred Ccc
Confidence 874
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-46 Score=453.76 Aligned_cols=208 Identities=19% Similarity=0.329 Sum_probs=174.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh-hhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD-LRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i 1063 (1232)
.++++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++...+..+ .|.++
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 489999983 1699999999999999999999999999999999999999999999999998776654 46789
Q ss_pred EEEccCC---CCCc-ccHHhccCCC-----C---CC--CHHHHHHHHHHcCCc-HHHHhhccCCcccccCCCCCCChhHH
Q 000904 1064 GIIPQDP---TLFN-GTVRYNLDPL-----S---QH--TDQEIWEVLAKCHLG-EAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1064 ~iVpQdP---~LF~-gTIr~NLdp~-----~---~~--sd~eI~~aL~~~~L~-~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
+|+||+| .+|. .|+.+|+..+ . .. .++++.++|+.+++. +. .......||||||
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LSgG~k 409 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNH-----------AEQAARTLSGGNQ 409 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCC-----------ccCccccCCcHHH
Confidence 9999996 3665 4899997421 1 11 123356677776663 22 2223457999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
||++|||||+.+|+||||||||++||..+.+.+.+.|++.. +++|||+||||++.+.+ ||+|++|++|+++..|++++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998743 47899999999999987 99999999999999999988
Q ss_pred HHhh
Q 000904 1207 LMKR 1210 (1232)
Q Consensus 1207 Ll~~ 1210 (1232)
+..+
T Consensus 490 ~~~~ 493 (510)
T PRK15439 490 INVD 493 (510)
T ss_pred CCHH
Confidence 7654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=440.08 Aligned_cols=203 Identities=18% Similarity=0.242 Sum_probs=168.8
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
..++++|++++|.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ + .++
T Consensus 323 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred eEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 35999999999953 3699999999999999999999999999999999999999999999964 2 269
Q ss_pred EEEccCC-CCCc-ccHHhccCCCCC-----CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1064 GIIPQDP-TLFN-GTVRYNLDPLSQ-----HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1064 ~iVpQdP-~LF~-gTIr~NLdp~~~-----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
+|+||++ .++. -|+++|+..... ..+++..++|+..++.+... .....+||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQ----------QKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHh----------cCchhhCCHHHHHHHHHHHH
Confidence 9999997 5554 599999863211 12345567788877753211 11235799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeC-CEEEE-ecChhHHHhhc
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISD-GKLAE-YDEPMKLMKRE 1211 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~-G~vvE-~g~p~~Ll~~~ 1211 (1232)
++.+|++|||||||++||..+...+.+.|++. + .|||+|||+++.+.. ||+|++|++ |++.+ .|+++++++++
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDK 535 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHH
Confidence 99999999999999999999999999999874 3 589999999999887 999999986 88875 67788777654
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=443.60 Aligned_cols=199 Identities=18% Similarity=0.258 Sum_probs=165.5
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
..++++|++++|++ .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ +.++
T Consensus 507 ~~L~~~~ls~~y~~-~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPG-GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCC-CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 36999999999953 34699999999999999999999999999999999999999999999876 3579
Q ss_pred EEEccCCCCCcccHHhccC-----CCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc
Q 000904 1064 GIIPQDPTLFNGTVRYNLD-----PLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL 1138 (1232)
Q Consensus 1064 ~iVpQdP~LF~gTIr~NLd-----p~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL 1138 (1232)
+|+||++. ...++.+|.. .+...+++++.++|+.+++.+..... .+.+||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~----------~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcC----------CccccCHHHHHHHHHHHHHh
Confidence 99999973 1223333321 12234578899999999986432222 24589999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEE-EecChhHH
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLA-EYDEPMKL 1207 (1232)
Q Consensus 1139 ~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv-E~g~p~~L 1207 (1232)
++|++|||||||++||..+.+.+.+.|++. ++|||+||||++.+.. ||+|++|++|+++ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999999998863 4599999999999987 9999999999998 45666654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-44 Score=446.67 Aligned_cols=200 Identities=21% Similarity=0.326 Sum_probs=168.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+++ ..+++
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-----------GIKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-----------CEEEE
Confidence 5999999999953 4699999999999999999999999999999999999999999999974 13799
Q ss_pred EEccCC--CCC-cccHHhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccC
Q 000904 1065 IIPQDP--TLF-NGTVRYNLDPL-SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRR 1140 (1232)
Q Consensus 1065 iVpQdP--~LF-~gTIr~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~ 1140 (1232)
|+||++ .+. ..|+.+++... ....++++.++|+.+++.+..... ....||||||||++|||+++++
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTE----------ETRRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcC----------chhhCCHHHHHHHHHHHHHhcC
Confidence 999986 233 34777776322 223456788899998885322222 2347999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEE-EecChhHHHh
Q 000904 1141 SRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLA-EYDEPMKLMK 1209 (1232)
Q Consensus 1141 ~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv-E~g~p~~Ll~ 1209 (1232)
|++|||||||++||..+...+.+.|++. ++|||+||||++.+.. ||+|++|++|+++ ..|++++..+
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999999999999999874 4699999999999987 9999999999998 5688887743
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=400.18 Aligned_cols=234 Identities=32% Similarity=0.549 Sum_probs=214.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+.+.+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+..++|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 47899999996544569999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 000904 1066 IPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRIL 1144 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kIL 1144 (1232)
+||+|.+|+.|+++|+.... ..+.+++.++++..++.+.+..+|.|+++.....+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999997533 24566778888889999999999999999888899999999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHH
Q 000904 1145 VLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1145 ILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
||||||++||..+.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|++++++++ .+.|+.+++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 999999999999999999999987668999999999999988999999999999999999999876 577777654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=449.00 Aligned_cols=206 Identities=17% Similarity=0.264 Sum_probs=168.9
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-CccEEEECCeeCCC-CChHhhhcc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-AGGKILVDGIDISK-LGLHDLRSR 1062 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-~~G~I~IDG~dI~~-i~l~~LR~~ 1062 (1232)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.++|.++.. ......|++
T Consensus 260 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 260 RIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred eEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 5999999999963 3599999999999999999999999999999999998876 69999999987632 234456789
Q ss_pred EEEEccCCCCCc---ccHHhccCC-C-------CCCC---HHHHHHHHHHcCCcH-HHHhhccCCcccccCCCCCCChhH
Q 000904 1063 FGIIPQDPTLFN---GTVRYNLDP-L-------SQHT---DQEIWEVLAKCHLGE-AVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1063 i~iVpQdP~LF~---gTIr~NLdp-~-------~~~s---d~eI~~aL~~~~L~~-~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
++|+||+|.++. .|+++++.. + .... ++++.++++.+++.+ .... ...+|||||
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGq 406 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADA-----------PFHSLSWGQ 406 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccC-----------chhhCCHHH
Confidence 999999986542 467766532 1 1111 245778888888764 3222 235799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-C-cEEEEEecChhhhhh--cCeEEEEeCCEEEEecC
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA-D-CTVITVAHRIPTVMD--CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~-~-~TVI~IAHrl~ti~~--~DrVlVL~~G~vvE~g~ 1203 (1232)
|||++|||||+++|++|+|||||++||+++.+.+.+.|++..+ + .|||+||||++.+.+ ||++++|++|++++.-+
T Consensus 407 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 407 QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 9999999999999999999999999999999999999987533 3 479999999999975 79999999999988643
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=381.70 Aligned_cols=217 Identities=29% Similarity=0.439 Sum_probs=194.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+|+||+++|. ...+++|+||+|++||.+.++|+|||||||+++++.|+++|++|+|+|||.||++++..+||++|||
T Consensus 2 I~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 78999999997 4569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCcc-cHHhccCCCC---CCC----HHHHHHHHHHcCCcH--HHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPLS---QHT----DQEIWEVLAKCHLGE--AVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~~---~~s----d~eI~~aL~~~~L~~--~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
|-|.--||.. ||.+|+.... ..+ ++++.|.|+.+||.. +..+.| ++|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 9999999954 9999996322 223 456788899999964 444444 579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcC
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~ 1212 (1232)
||+.+|+||+||||.++||+-|...+|+-+.+.- -++|+|+||||++.... +|||.||++|+++.+|+|++++.+|.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 9999999999999999999999999999876532 37899999999988766 99999999999999999999999987
Q ss_pred CHH
Q 000904 1213 SLF 1215 (1232)
Q Consensus 1213 ~~f 1215 (1232)
..|
T Consensus 229 n~F 231 (309)
T COG1125 229 NDF 231 (309)
T ss_pred HHH
Confidence 666
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=394.18 Aligned_cols=221 Identities=57% Similarity=0.977 Sum_probs=208.5
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
|.++++|++++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 56899999999975445699999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000904 1064 GIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI 1143 (1232)
Q Consensus 1064 ~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kI 1143 (1232)
+|+||+|.+|++|+++|++++....++++.++++..++.+.+..+|.|+++...+.+.+||+|||||++|||||+++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999997766778889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecCh
Q 000904 1144 LVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1144 LILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p 1204 (1232)
|+|||||++||..+.+.+.+.|++..++.|+|++||+++.+..||++++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999987667899999999999999999999999999998764
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=433.26 Aligned_cols=201 Identities=19% Similarity=0.261 Sum_probs=166.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ + .+++
T Consensus 322 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~ 388 (552)
T TIGR03719 322 VIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLA 388 (552)
T ss_pred EEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEE
Confidence 5999999999963 4699999999999999999999999999999999999999999999965 2 2699
Q ss_pred EEccCCC-CC-cccHHhccCCCC---CC--CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1065 IIPQDPT-LF-NGTVRYNLDPLS---QH--TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1065 iVpQdP~-LF-~gTIr~NLdp~~---~~--sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
|+||++. ++ ..|+++|+.... .. .+.+..++++.+++.+... .....+||||||||++|||||
T Consensus 389 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGe~qrv~la~al 458 (552)
T TIGR03719 389 YVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQ----------QKKVGQLSGGERNRVHLAKTL 458 (552)
T ss_pred EEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHh----------cCchhhCCHHHHHHHHHHHHH
Confidence 9999973 55 459999986321 11 2344567787777743211 123357999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeC-CEEEEe-cChhHHHhh
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISD-GKLAEY-DEPMKLMKR 1210 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~-G~vvE~-g~p~~Ll~~ 1210 (1232)
+.+|++|||||||++||..+.+.+.+.|++. . +|||+|||+++.+.. ||+|++|++ |+++++ |+.++..+.
T Consensus 459 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 459 KSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 9999999999999999999999999999975 3 589999999999987 899999997 688754 666666544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=437.78 Aligned_cols=199 Identities=23% Similarity=0.313 Sum_probs=165.9
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ +++
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 4899999999953 46999999999999999999999999999999999999999999999 4322 699
Q ss_pred EEccCC-CCCc-ccHHhccCCCC-CC--C--HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1065 IIPQDP-TLFN-GTVRYNLDPLS-QH--T--DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1065 iVpQdP-~LF~-gTIr~NLdp~~-~~--s--d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
|++|++ .++. .|+++|+.... .. . +.++.+.|+.+++.+..... ....||||||||++||||+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMT----------PVKALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhC----------hhhhCCHHHHHHHHHHHHH
Confidence 999987 3554 49999986321 11 1 45677888888875322222 2347999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEe-CCEEEEe-cChhHHH
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAIS-DGKLAEY-DEPMKLM 1208 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~-~G~vvE~-g~p~~Ll 1208 (1232)
+++|++|||||||++||..+...+.+.|++. ++|||+||||++.+.. ||+|++|+ +|++.++ |+.++-+
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 9999999999999999999999999999863 5699999999999977 99999998 8999986 4444443
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=442.84 Aligned_cols=210 Identities=20% Similarity=0.336 Sum_probs=170.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH-hhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH-DLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~-~LR~~i 1063 (1232)
.|+++|++++| +.+|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.+||.++...+.. .+|+.+
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred EEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 58999999875 2499999999999999999999999999999999999999999999999999876654 357789
Q ss_pred EEEccCCC---CCc-ccHHhc-----cCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChh
Q 000904 1064 GIIPQDPT---LFN-GTVRYN-----LDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMG 1126 (1232)
Q Consensus 1064 ~iVpQdP~---LF~-gTIr~N-----Ldp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgG 1126 (1232)
+|+||++. +|. .|+++| +... +..+ ++++.+.++..++.+. .......+||||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG 395 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP----------GHRTQIGSLSGG 395 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCC----------CcccccccCCcH
Confidence 99999963 554 466555 3211 1111 2334556666555310 123345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p 1204 (1232)
||||++||||++++|+||||||||++||..+.+.+.+.|++.. ++.|||+||||++.+.. |||+++|++|+++..+++
T Consensus 396 q~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 396 NQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 9999999999999999999999999999999999999997642 47899999999999977 899999999999988876
Q ss_pred hHHH
Q 000904 1205 MKLM 1208 (1232)
Q Consensus 1205 ~~Ll 1208 (1232)
+++.
T Consensus 476 ~~~~ 479 (491)
T PRK10982 476 KTTT 479 (491)
T ss_pred ccCC
Confidence 5443
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-44 Score=374.55 Aligned_cols=227 Identities=27% Similarity=0.413 Sum_probs=190.0
Q ss_pred eEEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC-hHhhhc
Q 000904 985 KVDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG-LHDLRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~LR~ 1061 (1232)
.++++|+++.|+... .++|+||||+|.+||.+||||+||||||||.++|.|+.+|++|+|.+||.+..... -+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999996432 24999999999999999999999999999999999999999999999997765543 346788
Q ss_pred cEEEEccCCC--CC-cccHHhccC-CCCC----CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHH
Q 000904 1062 RFGIIPQDPT--LF-NGTVRYNLD-PLSQ----HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCL 1133 (1232)
Q Consensus 1062 ~i~iVpQdP~--LF-~gTIr~NLd-p~~~----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~L 1133 (1232)
.+.+|+|||. |= .-||++-|. |... ...++++++|+.+||.+..... .+.+||||||||+||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R----------~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDR----------RPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhc----------CchhcChhHHHHHHH
Confidence 9999999995 21 235665542 3221 2456699999999998766543 345799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1134 GRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1134 ARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||||.-+|++||+|||||+||....+.|.+.+.+..+ +-|.|+||||+..+.. ||||+||++|+++|.++..+++..
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999998877544 5599999999999998 999999999999999999999987
Q ss_pred cCCHHHHHHHH
Q 000904 1211 EGSLFGQLVRE 1221 (1232)
Q Consensus 1211 ~~~~f~~l~~~ 1221 (1232)
+...|.+..-+
T Consensus 233 ~~h~ytr~Ll~ 243 (252)
T COG1124 233 PSHPYTRELLE 243 (252)
T ss_pred CccHHHHHHHH
Confidence 66666554443
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=413.22 Aligned_cols=202 Identities=25% Similarity=0.334 Sum_probs=176.4
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
-.++++|+++.|.++ +++++++||.|.+|+|||||||||+|||||+++|.|...|.+|+|.+.- .-++
T Consensus 320 ~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-----------~v~i 387 (530)
T COG0488 320 LVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-----------TVKI 387 (530)
T ss_pred eeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-----------ceEE
Confidence 359999999999654 5799999999999999999999999999999999999999999999864 2379
Q ss_pred EEEccCC-CCC-cccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccC
Q 000904 1064 GIIPQDP-TLF-NGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRR 1140 (1232)
Q Consensus 1064 ~iVpQdP-~LF-~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~ 1140 (1232)
||.+|+- .++ +.|+-+++.... +..+.+++..|.++++...-...|- ..||||||-|+.||+.++.+
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v----------~~LSGGEk~Rl~La~ll~~~ 457 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPV----------GVLSGGEKARLLLAKLLLQP 457 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCch----------hhcCHhHHHHHHHHHHhccC
Confidence 9999998 344 348888886544 3348899999999999876655544 37999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEe-cChhHHHhh
Q 000904 1141 SRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEY-DEPMKLMKR 1210 (1232)
Q Consensus 1141 ~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~-g~p~~Ll~~ 1210 (1232)
|++|||||||++||.+|.+.+.++|.+ .+.|||+||||.+++.. |++|+++++ ++.++ |+.++..+.
T Consensus 458 pNvLiLDEPTNhLDi~s~~aLe~aL~~--f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 458 PNLLLLDEPTNHLDIESLEALEEALLD--FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 999999999999999999999999986 46799999999999998 899999999 88887 777776654
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=388.94 Aligned_cols=231 Identities=32% Similarity=0.552 Sum_probs=210.9
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+....++++|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999996433369999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 000904 1066 IPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRIL 1144 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kIL 1144 (1232)
+||+|.+|..|+++|+.... ....+++.+.++..++.+.+..+|.|+++.....+.+||+|||||++|||||+++|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997543 34566777888889999999999989999988889999999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHH
Q 000904 1145 VLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1145 ILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~ 1217 (1232)
+|||||++||..+.+.+.+.|++..++.|+|++||+++.+..||+|++|++|++++.|+++++.++ .+.|+.
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~ 232 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAK 232 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhh
Confidence 999999999999999999999987678899999999999988999999999999999999999875 455554
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=385.33 Aligned_cols=213 Identities=28% Similarity=0.451 Sum_probs=188.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+ .+++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.+||.|+.+++.+++.++++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 378999999996 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCC-CCcccHHhccC----C----CCCCC--H-HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1065 IIPQDPT-LFNGTVRYNLD----P----LSQHT--D-QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1065 iVpQdP~-LF~gTIr~NLd----p----~~~~s--d-~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
||||++. -|.-||+|-+. | +...+ | +.+.++|+.+++.++..+. -..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHHH
Confidence 9999974 45668876553 2 22222 3 3578899999998876543 2479999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||+++|+||+|||||++||....-.+.+.+++.. ++.|+|+|.||++.... ||++++|++|+++..|+|++.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999998754 47999999999998876 99999999999999999999987
Q ss_pred h
Q 000904 1210 R 1210 (1232)
Q Consensus 1210 ~ 1210 (1232)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 5
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=384.77 Aligned_cols=215 Identities=30% Similarity=0.451 Sum_probs=194.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCC-CCChHhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS-KLGLHDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~-~i~l~~LR~~i 1063 (1232)
.++++|++|+|.++ .++|+++|++|++||.++|+|+||||||||+++|.|+++|++|+|.+||.+++ +.+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 48899999999876 68999999999999999999999999999999999999999999999999998 48899999999
Q ss_pred EEEccCC--CCCcccHHhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDP--TLFNGTVRYNLDPLS---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP--~LF~gTIr~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
|+|+|+| ++|..||.+.+.... ..+. +.+.++|+.+++.++... .+.+||||||||+|||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r-----------~p~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDR-----------PPFNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccC-----------CccccCCcceeeHHhh
Confidence 9999999 799999999986322 1333 447789999998877433 3468999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
.+|+.+|++||||||||+||+...+.+.+.+++..+ +.|+|+||||++.+.+ |||++||++|+++.+|+|++++++.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999999999999999999999999998654 4699999999999999 9999999999999999999999864
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=404.93 Aligned_cols=224 Identities=27% Similarity=0.443 Sum_probs=193.4
Q ss_pred EEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh---hh
Q 000904 986 VDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD---LR 1060 (1232)
Q Consensus 986 I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR 1060 (1232)
|+++|++++|+.+ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887554 58
Q ss_pred ccEEEEccCCCCCc-ccHHhccCC-C--CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1061 SRFGIIPQDPTLFN-GTVRYNLDP-L--SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1061 ~~i~iVpQdP~LF~-gTIr~NLdp-~--~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
++|+||||++.+|. .|+++|+.. . ...+ ++++.++|+.+++.+..... +.+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-----------~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY-----------PSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999985 799999962 1 1122 34577889999987765443 3579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||+.+|+||+||||||+||+++...+.+.|++..+ +.|||+|||+++.+.+ ||+|++|++|+++|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999988543 7899999999999987 99999999999999999999998
Q ss_pred hcCCHH-HHHHH
Q 000904 1210 REGSLF-GQLVR 1220 (1232)
Q Consensus 1210 ~~~~~f-~~l~~ 1220 (1232)
++...+ ++++.
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 765444 44443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-43 Score=378.92 Aligned_cols=207 Identities=57% Similarity=0.955 Sum_probs=188.3
Q ss_pred CCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh
Q 000904 980 WPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL 1059 (1232)
Q Consensus 980 wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L 1059 (1232)
||..+.++++|++++|+....++++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+..++
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 88889999999999996433469999999999999999999999999999999999999999999999999998888888
Q ss_pred hccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1060 RSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1060 R~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
|++++|+||+|.+|++|+++|+..+...+++++.++++ +...+.+||+|||||++||||+++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999998665555666655554 234567899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecCh
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p 1204 (1232)
+|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+..||++++|++|++++.|+|
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999987668999999999999988999999999999998875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-43 Score=384.84 Aligned_cols=226 Identities=36% Similarity=0.614 Sum_probs=208.7
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
|.++++|++++|.. .+++++|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 46899999999963 24599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000904 1064 GIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1064 ~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
+|+||+|.+|.+|+++|+.... ...++++.++++.+++.+....+|.|+++.+.....+||+|||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999997543 345677888999999999999999999999988899999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1143 ILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+|+|||||++||..+.+.+.+.|++..++.|||+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999986568899999999999988999999999999999998888765
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=385.32 Aligned_cols=233 Identities=33% Similarity=0.610 Sum_probs=213.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+.+ ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++++.+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999633 459999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 000904 1066 IPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRIL 1144 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kIL 1144 (1232)
+||+|.+|++|+++|+.... ..+++++.++++.+++.+.+..+|.|+++.+...+.+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999996432 35677788899999999999999999999999899999999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHH
Q 000904 1145 VLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1145 ILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
||||||++||.++.+.+.+.|++..++.|+|++||+++.+..||++++|++|++++.|+++++.++ .+.|+.++.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~ 234 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWK 234 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHh
Confidence 999999999999999999999876557899999999999988999999999999999999998875 567766554
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=363.54 Aligned_cols=224 Identities=29% Similarity=0.467 Sum_probs=196.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh---Hhhhc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL---HDLRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR~ 1061 (1232)
.|++++|+++|. ...|++||||+|++||..||+|+||||||||++++.|+..|++|+|.++|.||.+++- ..+|+
T Consensus 8 ~I~vr~v~~~fG--~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 8 LIEVRGVTKSFG--DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred eEEEeeeeeecC--CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 599999999995 3569999999999999999999999999999999999999999999999999998875 45699
Q ss_pred cEEEEccCCCCCcc-cHHhccC-CCCCC---CHHHH----HHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1062 RFGIIPQDPTLFNG-TVRYNLD-PLSQH---TDQEI----WEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~g-TIr~NLd-p~~~~---sd~eI----~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
++|+++|.--||+. ||+||+. |..+| +++++ ..-|+.+||...+.++- ++.||||.|.|++
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~----------PsELSGGM~KRva 155 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY----------PSELSGGMRKRVA 155 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC----------chhhcchHHHHHH
Confidence 99999999999965 9999996 44443 44444 45678888888755442 4589999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
||||+..+|+||++||||++||+-+...+-+.|++.. -+.|+|+||||++++.. ||||+++.||+|+-.|+|+++.+
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999988888887643 37899999999999988 89999999999999999999999
Q ss_pred hcCCHHHHHHH
Q 000904 1210 REGSLFGQLVR 1220 (1232)
Q Consensus 1210 ~~~~~f~~l~~ 1220 (1232)
.++-..++.++
T Consensus 236 sd~P~v~qf~~ 246 (263)
T COG1127 236 SDDPWVRQFFN 246 (263)
T ss_pred CCCHHHHHHhc
Confidence 87777666654
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=382.98 Aligned_cols=233 Identities=34% Similarity=0.610 Sum_probs=210.0
Q ss_pred EEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 986 VDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
++++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+....|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999642 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000904 1065 IIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI 1143 (1232)
Q Consensus 1065 iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kI 1143 (1232)
|+||+|.+|+.|+++|+.... ....+++.+.++..++.+.+..+|.|+++.......+||||||||++|||||+++|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999997432 3456677888888999999999999999999888999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHH
Q 000904 1144 LVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219 (1232)
Q Consensus 1144 LILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~ 1219 (1232)
|||||||++||+.+.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|+++++.+. .+..+.++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHh
Confidence 9999999999999999999999876568899999999999988999999999999999999998865 44554443
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=377.54 Aligned_cols=219 Identities=34% Similarity=0.538 Sum_probs=200.0
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
|.++++|++++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.++|.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999964334699999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000904 1064 GIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1064 ~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
+|+||+|.+|..|+++|+.... ..+++++.++++.+++.+.....|.|+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999899999997432 245667888999999999999999999999988899999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEec
Q 000904 1143 ILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g 1202 (1232)
+|||||||++||.++...+.+.|++..+++|||++||+++.+.-||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999865568999999999988779999999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=374.39 Aligned_cols=209 Identities=26% Similarity=0.389 Sum_probs=182.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|+.. +||+||||+|++||.+||+||||||||||+++++|+++|++|+|.++|.++++... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 58999999999744 49999999999999999999999999999999999999999999999988766432 57899
Q ss_pred EEccCC---CCCcccHHhccCCC--------C---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1065 IIPQDP---TLFNGTVRYNLDPL--------S---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1065 iVpQdP---~LF~gTIr~NLdp~--------~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
||||.. .-|.-||++-+... + ..+.+++.+||+++++.++..+ +- ..|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-~i----------~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-QI----------GELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-cc----------cccCcHHHHH
Confidence 999965 35788999876432 1 1234789999999999976543 22 3699999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA-DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~-~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
+.|||||+.+|++|+|||||+++|+.++..|.+.|++..+ ||||++|+||++.+.+ +|+|+.| |+++.-.|+|++.+
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhcc
Confidence 9999999999999999999999999999999999988654 8999999999999988 8999988 57788999999998
Q ss_pred hh
Q 000904 1209 KR 1210 (1232)
Q Consensus 1209 ~~ 1210 (1232)
+.
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 75
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=379.38 Aligned_cols=211 Identities=29% Similarity=0.487 Sum_probs=185.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc-----cCCccEEEECCeeCCCCC--hHh
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV-----EPAGGKILVDGIDISKLG--LHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~-----ep~~G~I~IDG~dI~~i~--l~~ 1058 (1232)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 478999999963 36999999999999999999999999999999999999 999999999999998876 667
Q ss_pred hhccEEEEccCCCCCcccHHhccCCCC----CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1059 LRSRFGIIPQDPTLFNGTVRYNLDPLS----QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~gTIr~NLdp~~----~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
+|++++|+||+|.+|..|+++|+.... .. .++++.++++.+++.+.....+. +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 788999999999999889999996321 11 23567888998888765544321 45899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
++|||||+++|++|+|||||++||.++.+.+.+.|++..++.|||+||||++.+.+ ||+|++|++|++++.|+|+++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999986555899999999999876 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=380.65 Aligned_cols=212 Identities=29% Similarity=0.425 Sum_probs=184.9
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh---Hhhhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL---HDLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR~~ 1062 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 468999999953 469999999999999999999999999999999999999999999999999987764 567889
Q ss_pred EEEEccCCCCCcc-cHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHH
Q 000904 1063 FGIIPQDPTLFNG-TVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCL 1133 (1232)
Q Consensus 1063 i~iVpQdP~LF~g-TIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~L 1133 (1232)
++|+||+|.+|.+ |+++|+... ...+ ++++.++++.+++.+..... ..+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLY-----------PAELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHH
Confidence 9999999999876 999998632 1122 23467788888886554332 34799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1134 GRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1134 ARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||||+++|+||||||||++||..+.+.+.+.|++.. .++|||+||||++.+.. ||+|++|++|++++.|+++++++.
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 999999999999999999999999999999998754 37899999999999887 999999999999999999998764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=394.30 Aligned_cols=216 Identities=25% Similarity=0.342 Sum_probs=184.4
Q ss_pred eEEEEeeEeEecCC---CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC-------
Q 000904 985 KVDICDLQIRYRPD---SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL------- 1054 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~---~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i------- 1054 (1232)
.|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 59999999999642 23699999999999999999999999999999999999999999999999998753
Q ss_pred ---------ChHhhhccEEEEccCC--CCCcccHHhccCCCC---CCCHH----HHHHHHHHcCCcHHHHhhccCCcccc
Q 000904 1055 ---------GLHDLRSRFGIIPQDP--TLFNGTVRYNLDPLS---QHTDQ----EIWEVLAKCHLGEAVREKENGLDSLV 1116 (1232)
Q Consensus 1055 ---------~l~~LR~~i~iVpQdP--~LF~gTIr~NLdp~~---~~sd~----eI~~aL~~~~L~~~i~~~p~gLdt~v 1116 (1232)
....+|++++|++|+| .+|++|+++|+.... ..+++ ++.++++.+++.+ ...
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~ 170 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------SYL 170 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------hHh
Confidence 3567899999999999 689999999995321 12333 3445555555531 223
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhh-cCeEEEEe
Q 000904 1117 VEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMD-CTMVLAIS 1194 (1232)
Q Consensus 1117 ~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~-~DrVlVL~ 1194 (1232)
...+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++. .+++|||+||||++.+.. ||+|++|+
T Consensus 171 ~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~ 250 (320)
T PRK13631 171 ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMD 250 (320)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 4566799999999999999999999999999999999999999999999864 247899999999998865 99999999
Q ss_pred CCEEEEecChhHHHhh
Q 000904 1195 DGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1195 ~G~vvE~g~p~~Ll~~ 1210 (1232)
+|++++.|+|++++++
T Consensus 251 ~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 251 KGKILKTGTPYEIFTD 266 (320)
T ss_pred CCEEEEeCCHHHHhcC
Confidence 9999999999998764
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=377.65 Aligned_cols=222 Identities=29% Similarity=0.468 Sum_probs=193.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+...+..++|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4889999999953 46999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCCCcccHHhccCCCC---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1065 IIPQDPTLFNGTVRYNLDPLS---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1065 iVpQdP~LF~gTIr~NLdp~~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
|+||+|.+|..|+++|+.... ...++++.+.++.+++.+... ...+.+||||||||++||||++++|
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA----------TRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh----------hCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999997321 223456788888888852211 1235689999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHHHHH
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l 1218 (1232)
++|||||||++||.++.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|+|++++.++...+.+.
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 230 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKL 230 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHHH
Confidence 9999999999999999999999998753 37899999999999887 99999999999999999999987655445443
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=347.30 Aligned_cols=207 Identities=27% Similarity=0.402 Sum_probs=185.9
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH---hhhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH---DLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR~~ 1062 (1232)
|+|+||+.+|+.+ +++|+||||+|++||.+-++|+||||||||+++|+|..+|++|+|.++|.|++.+.-+ -||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7899999999866 7899999999999999999999999999999999999999999999999999988755 47999
Q ss_pred EEEEccCCCCC-cccHHhccC-CCC--CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1063 FGIIPQDPTLF-NGTVRYNLD-PLS--QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1063 i~iVpQdP~LF-~gTIr~NLd-p~~--~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
||+|+||.-|. +-||.||+. |.. ... .+++.++|+.+||++....+|. +|||||+||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHH
Confidence 99999999866 559999986 222 122 3467899999999999888875 6999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcC-eEEEEeCCEEEEecCh
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMDCT-MVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~~D-rVlVL~~G~vvE~g~p 1204 (1232)
||+..+|++|+-||||.+||+++...|.+.+.+. ..|.||++.|||.+.+.++. |++.+++|+++.++.+
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 9999999999999999999999999999999874 35899999999999999965 8999999999987764
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=441.60 Aligned_cols=248 Identities=21% Similarity=0.293 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHHHhhc--cCCCCCCcccCCCCCCCCCCCcc--eEEEEeeEeEec--CCCCccceeeeEEEeCCcEEEE
Q 000904 945 CTLANYIISVERLNQYM--HVPSEAPEVVEDNRPPPNWPVVG--KVDICDLQIRYR--PDSPLVLKGISCTFEGGHKIGI 1018 (1232)
Q Consensus 945 ~~~e~~~~sveRi~~~~--~~~~e~~~~~~~~~~~~~wp~~G--~I~~~nvs~~Y~--~~~~~vL~~vsl~I~~GekvgI 1018 (1232)
.+.|+.+.++||..++. +.+.|.+.......++. ..| .++++|++++|+ ++.+.+|+|||++|++||++||
T Consensus 718 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI 794 (1394)
T TIGR00956 718 ETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEK---ESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTAL 794 (1394)
T ss_pred cccccccccccccccCCCCccccccccccccccccc---cCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEE
Confidence 34566677888888763 33333332221111221 134 478999999985 3346799999999999999999
Q ss_pred ECCCCCChHHHHHHHhcccc---CCccEEEECCeeCCCCChHhhhccEEEEccCCC-CCcccHHhccCCC------CCCC
Q 000904 1019 VGRTGSGKTTLIGALFRLVE---PAGGKILVDGIDISKLGLHDLRSRFGIIPQDPT-LFNGTVRYNLDPL------SQHT 1088 (1232)
Q Consensus 1019 VGrtGSGKSTLl~~L~rl~e---p~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~-LF~gTIr~NLdp~------~~~s 1088 (1232)
+||||||||||+++|+|+.+ |++|+|.+||+++. .++|++++||||++. ++..||||||+.. .+.+
T Consensus 795 ~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~ 870 (1394)
T TIGR00956 795 MGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVS 870 (1394)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999998 78899999999985 357899999999876 5577999999731 1233
Q ss_pred H----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC-EEEEeccCCCCCHHHHHHHHH
Q 000904 1089 D----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR-ILVLDEATASIDNATDMILQK 1163 (1232)
Q Consensus 1089 d----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k-ILILDEaTs~LD~~T~~~Iq~ 1163 (1232)
+ +++.++++..++.+ ..|+.+++.|.+||||||||++|||||+++|+ ||+||||||+||..+...|++
T Consensus 871 ~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~ 943 (1394)
T TIGR00956 871 KSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICK 943 (1394)
T ss_pred HHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHH
Confidence 3 34677888887753 36888888888999999999999999999997 999999999999999999999
Q ss_pred HHHHh-cCCcEEEEEecChhhh--hhcCeEEEEeCC-EEEEecChhH
Q 000904 1164 TIRAE-FADCTVITVAHRIPTV--MDCTMVLAISDG-KLAEYDEPMK 1206 (1232)
Q Consensus 1164 ~L~~~-~~~~TVI~IAHrl~ti--~~~DrVlVL~~G-~vvE~g~p~~ 1206 (1232)
.|++. .+++|||+++|+++.. ..+|+|++|++| +++++|++.+
T Consensus 944 ~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 944 LMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 99985 4589999999999974 459999999997 9999999743
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=386.01 Aligned_cols=216 Identities=27% Similarity=0.465 Sum_probs=194.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++.+|+... +++|+|++|+.||.++++||||||||||+++|+||.+|++|+|.|||.|++++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999997432 999999999999999999999999999999999999999999999999999998876 7899
Q ss_pred EEccCCCCCcc-cHHhccCC-CC------CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFNG-TVRYNLDP-LS------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp-~~------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
+|+|++.||.. ||++|+.. .. +.-++++.++++..++.+..+++|. +||||||||+|||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHH
Confidence 99999999976 99999973 11 1236678899999999888888764 699999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCC
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGS 1213 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~ 1213 (1232)
|+++|++++||||.|+||......+...|++.. -+.|+|.||||....+. +|||.||++|+|.+.|+|.++.+++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 999999999999999999999988888777633 26899999999988877 999999999999999999999999887
Q ss_pred HH
Q 000904 1214 LF 1215 (1232)
Q Consensus 1214 ~f 1215 (1232)
.|
T Consensus 228 ~f 229 (338)
T COG3839 228 LF 229 (338)
T ss_pred hh
Confidence 76
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=358.22 Aligned_cols=212 Identities=25% Similarity=0.410 Sum_probs=189.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC---hHhhhc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG---LHDLRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~LR~ 1061 (1232)
.|+++||+.+|+ +...+|+||||+|++||.|+|+|+||||||||+++|.|+.+|++|+|.++|.++..+. ++++|+
T Consensus 3 ~i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 489999999996 5567999999999999999999999999999999999999999999999999999887 778899
Q ss_pred cEEEEccCCCCCc-ccHHhccCC------------CCCCC---HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCCh
Q 000904 1062 RFGIIPQDPTLFN-GTVRYNLDP------------LSQHT---DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSM 1125 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~-gTIr~NLdp------------~~~~s---d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSg 1125 (1232)
++|+|+|+|.|.. -|+-+|+.. |+-++ ..+..++|+++|+.+..... .++|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr-----------a~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR-----------ASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH-----------hccCCc
Confidence 9999999998874 588888731 23333 34577899999998876654 348999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1126 GQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE--FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1126 GQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
||+||++|||||.++|+|++-|||||+||+.+.+.+++.|++. ..|.|||+.-|+++..++ ||||+-|++|+|+-+|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 9999999999999999999999999999999999999999874 347899999999999998 8999999999999999
Q ss_pred ChhHHH
Q 000904 1203 EPMKLM 1208 (1232)
Q Consensus 1203 ~p~~Ll 1208 (1232)
++.+|-
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 999963
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=361.57 Aligned_cols=205 Identities=29% Similarity=0.438 Sum_probs=175.7
Q ss_pred EEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH---hh-
Q 000904 986 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH---DL- 1059 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~L- 1059 (1232)
++++|++..|..+. ..+|+|+||+|++||.++|+||||||||||+++|.++..|++|+|.++|.|+..++-+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 3699999999999999999999999999999999999999999999999999999843 34
Q ss_pred hccEEEEccCCCCCc-ccHHhccC-C--CCCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1060 RSRFGIIPQDPTLFN-GTVRYNLD-P--LSQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1060 R~~i~iVpQdP~LF~-gTIr~NLd-p--~~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
|++||+|+|+..|++ -|++||+. | +... .++.+.+.++.+|+.+..... .+.+||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~----------~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKK----------KPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccC----------CchhcCHHHHHHH
Confidence 467999999999875 59999986 2 2222 244567777777887655522 2458999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEEE
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLAE 1200 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE 1200 (1232)
||||||+.+|+|++.||||++||.+|.+.|.+.+++.. .++|+|+||||......|||++.|.||++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999998863 3789999999999999999999999999543
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=377.81 Aligned_cols=219 Identities=22% Similarity=0.389 Sum_probs=192.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc---CCccEEEECCeeCCCCChHhhhc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE---PAGGKILVDGIDISKLGLHDLRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e---p~~G~I~IDG~dI~~i~l~~LR~ 1061 (1232)
.|+++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.|+.+.+....|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 3789999999963 469999999999999999999999999999999999985 68999999999999888888899
Q ss_pred cEEEEccCCCCCcccHHhccCCCC---C------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1062 RFGIIPQDPTLFNGTVRYNLDPLS---Q------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~gTIr~NLdp~~---~------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
+++|+||+|.+|..|+++|+.... . ..++++.++++.+++.+.+... ....+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHHH
Confidence 999999999999999999996421 1 1234577889999987655432 23356789999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
|||||+++|++|+|||||++||..+...+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|++++++..+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999999986668999999999998876 9999999999999999999998754
Q ss_pred C
Q 000904 1212 G 1212 (1232)
Q Consensus 1212 ~ 1212 (1232)
.
T Consensus 233 ~ 233 (246)
T PRK14269 233 K 233 (246)
T ss_pred C
Confidence 3
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=384.62 Aligned_cols=215 Identities=26% Similarity=0.429 Sum_probs=190.0
Q ss_pred eEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 985 KVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
.++++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999642 24699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCCC--CCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDPT--LFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP~--LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
+|+||+|. ++..||++|+.... ..+ ++++.++++.+++.+..... +.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE-----------PARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 99999983 66789999996321 122 34578899999887665443 358999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|||+++|++|||||||++||..+.+.+.+.|++.. .++|||+||||++.+..||+|++|++|++++.|+|++++.+
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999999998753 27899999999999977999999999999999999998765
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=392.94 Aligned_cols=217 Identities=23% Similarity=0.350 Sum_probs=190.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ...+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+++.+ +++|+
T Consensus 3 ~l~i~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCC-CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 3889999999942 24699999999999999999999999999999999999999999999999999887754 47899
Q ss_pred EEccCCCCCc-ccHHhccCCC-C--CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFN-GTVRYNLDPL-S--QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
||||+|.+|. .||++|+... . ..+ ++++.++++.+++.+...+.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 5999999632 1 122 345778899999877665554 4799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCC
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGS 1213 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~ 1213 (1232)
|+++|++|+||||||+||..+.+.+.+.|++..+ +.|+|+||||++.+.. ||+|++|++|++++.|+|+++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999987543 7899999999998876 999999999999999999999988765
Q ss_pred HH
Q 000904 1214 LF 1215 (1232)
Q Consensus 1214 ~f 1215 (1232)
.|
T Consensus 229 ~~ 230 (356)
T PRK11650 229 TF 230 (356)
T ss_pred HH
Confidence 55
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=393.63 Aligned_cols=220 Identities=25% Similarity=0.402 Sum_probs=189.9
Q ss_pred EEEEeeEeEecC--CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh---hh
Q 000904 986 VDICDLQIRYRP--DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD---LR 1060 (1232)
Q Consensus 986 I~~~nvs~~Y~~--~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR 1060 (1232)
|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 689999999962 2346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred ccEEEEccCCCCCc-ccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1061 SRFGIIPQDPTLFN-GTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1061 ~~i~iVpQdP~LF~-gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
++++|+||+|.+|. .|+++|+... ...+ ++++.++++.+++.+..... +.+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY-----------PAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999886 6999998632 1122 24567788888876554333 3579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||+++|+||+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.+ ||+|++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999987532 7899999999999987 99999999999999999999987
Q ss_pred hcCCHHH
Q 000904 1210 REGSLFG 1216 (1232)
Q Consensus 1210 ~~~~~f~ 1216 (1232)
++...+.
T Consensus 231 ~~~~~~~ 237 (343)
T PRK11153 231 HPKHPLT 237 (343)
T ss_pred CCCcHHH
Confidence 6544443
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=371.81 Aligned_cols=210 Identities=25% Similarity=0.374 Sum_probs=183.0
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+.+.+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.... .++|++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 4789999999643256999999999999999999999999999999999999999999999999987643 667889999
Q ss_pred EccCCCCC-cccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLF-NGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF-~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+| ..|+++|+.... ..+ +++++++++.+++.+..... ..+||+|||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKR-----------ARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhCh-----------hhhCCHHHHHHHHHHHHH
Confidence 99999988 679999985321 112 24577888888886544332 357999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
+++|++|+|||||++||+.+.+.+.+.|++..+++|+|++||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999987667999999999999977 999999999999999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=384.80 Aligned_cols=216 Identities=26% Similarity=0.441 Sum_probs=185.7
Q ss_pred EEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC--hHhhh
Q 000904 986 VDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG--LHDLR 1060 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~--l~~LR 1060 (1232)
|+++|++++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++++.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996422 36999999999999999999999999999999999999999999999999998754 45788
Q ss_pred ccEEEEccCC--CCCcccHHhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1061 SRFGIIPQDP--TLFNGTVRYNLDPLS---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1061 ~~i~iVpQdP--~LF~gTIr~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
++++|+||+| .+|..|+++|+.... ..++ +++.++++.+++.. +......+.+||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHHH
Confidence 9999999998 578899999996321 1232 34678888888751 0112234568999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
+|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+||||++.+.. ||||++|++|++++.|++++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999987542 7899999999999865 9999999999999999999987
Q ss_pred hh
Q 000904 1209 KR 1210 (1232)
Q Consensus 1209 ~~ 1210 (1232)
++
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 64
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=371.33 Aligned_cols=216 Identities=31% Similarity=0.496 Sum_probs=195.3
Q ss_pred cceEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhc
Q 000904 983 VGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~ 1061 (1232)
.|.++++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+....|+
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4679999999999642 246999999999999999999999999999999999999999999999999998887778889
Q ss_pred cEEEEccCCCCCcccHHhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccC
Q 000904 1062 RFGIIPQDPTLFNGTVRYNLDPL-SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRR 1140 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~gTIr~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~ 1140 (1232)
+++|+||+|.+|++|+++|++.. .....+++++..+..++.+.+..++.|+++.+...+.+||||||||++|||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999742 23344566666777788888888888899888888999999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEE
Q 000904 1141 SRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKL 1198 (1232)
Q Consensus 1141 ~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~v 1198 (1232)
|++|||||||++||.++.+.+.+.|++..++.|+|+|||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999986667899999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=370.65 Aligned_cols=202 Identities=23% Similarity=0.351 Sum_probs=175.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH---hhhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH---DLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR~~ 1062 (1232)
++++|++++|+.+.+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 689999999964334699999999999999999999999999999999999999999999999999876543 46889
Q ss_pred EEEEccCCCCCc-ccHHhccCCC----CC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1063 FGIIPQDPTLFN-GTVRYNLDPL----SQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1063 i~iVpQdP~LF~-gTIr~NLdp~----~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
++|+||+|.+|. .|+++|+... +. ..++++.++++.+++.+.....| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999886 5999998631 11 12456888999998876554433 47999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEE
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKL 1198 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~v 1198 (1232)
|||+++|++|+|||||++||.++.+.+.+.|++.. .++|||+||||++.+.+ ||+|++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998753 37899999999999986 899999999985
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=375.74 Aligned_cols=222 Identities=25% Similarity=0.394 Sum_probs=191.8
Q ss_pred cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CC
Q 000904 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LG 1055 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~ 1055 (1232)
.+.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 467999999999963 369999999999999999999999999999999999997 589999999999863 45
Q ss_pred hHhhhccEEEEccCCCCCcccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhH
Q 000904 1056 LHDLRSRFGIIPQDPTLFNGTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1056 l~~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
...+|++++|+||+|.+|..|+++|+... ...+ +++++++++.+++.+.+.. .......+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHHH
Confidence 66789999999999999999999999632 1122 3567888998888543322 2234567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
|||++|||||+++|+||||||||++||..+.+.+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987567899999999999876 99999999999999999999
Q ss_pred HHhhcCC
Q 000904 1207 LMKREGS 1213 (1232)
Q Consensus 1207 Ll~~~~~ 1213 (1232)
+++++..
T Consensus 242 ~~~~~~~ 248 (260)
T PRK10744 242 IFTKPAK 248 (260)
T ss_pred HHhCCCc
Confidence 9876443
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=390.47 Aligned_cols=217 Identities=23% Similarity=0.372 Sum_probs=191.1
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
..|+++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+.+ ++++
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999953 4699999999999999999999999999999999999999999999999999877653 5789
Q ss_pred EEEccCCCCCcc-cHHhccCCC-C--CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPL-S--QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
+||||++.+|.. |+++|+... . ..+ ++++.++++.+++.+...+. +.+||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999965 999999731 1 122 45678889998887654443 3579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcC
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~ 1212 (1232)
||+++|++|+||||||+||..+.+.+.+.|++..+ +.|+|+||||++.+.. ||+|+||++|++++.|+|+++++++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999987543 7899999999999877 99999999999999999999998877
Q ss_pred CHH
Q 000904 1213 SLF 1215 (1232)
Q Consensus 1213 ~~f 1215 (1232)
..|
T Consensus 230 ~~~ 232 (351)
T PRK11432 230 SRF 232 (351)
T ss_pred chH
Confidence 655
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=381.01 Aligned_cols=211 Identities=24% Similarity=0.373 Sum_probs=186.9
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.+++|++++
T Consensus 4 ~l~~~~l~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKD-GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCC-CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 4899999999963 246999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCC--CCCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1065 IIPQDP--TLFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1065 iVpQdP--~LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
|+||+| .++..|+++|+.... ..+ ++++.++++.+++.+...+.| .+||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999 688899999996321 112 346788899998876654443 479999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
||+++|++|+|||||++||+.+...+.+.|++.. .++|||+||||++.+.+ ||||++|++|++++.|+|+++
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999998753 37899999999999966 999999999999999998754
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=375.02 Aligned_cols=212 Identities=27% Similarity=0.442 Sum_probs=183.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC---hHhhhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG---LHDLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~LR~~ 1062 (1232)
++++|++++|+.+ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999632 46999999999999999999999999999999999999999999999999998876 4567889
Q ss_pred EEEEccCCCCCc-ccHHhccCCC------------C---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChh
Q 000904 1063 FGIIPQDPTLFN-GTVRYNLDPL------------S---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMG 1126 (1232)
Q Consensus 1063 i~iVpQdP~LF~-gTIr~NLdp~------------~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgG 1126 (1232)
++|+||++.+|. .|+++|+... + ...++++.++++.+++.+.. ...+.+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----------YQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----------CCCcccCCHH
Confidence 999999998886 6999998521 1 11234567778887775432 2345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .++|||+||||++.+.+ ||+|++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999998753 37899999999999985 99999999999999999
Q ss_pred hhHHHh
Q 000904 1204 PMKLMK 1209 (1232)
Q Consensus 1204 p~~Ll~ 1209 (1232)
++++.+
T Consensus 229 ~~~~~~ 234 (241)
T cd03256 229 PAELTD 234 (241)
T ss_pred HHHhhH
Confidence 998743
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=383.09 Aligned_cols=215 Identities=25% Similarity=0.372 Sum_probs=184.9
Q ss_pred EEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC----CChHh
Q 000904 986 VDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK----LGLHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~----i~l~~ 1058 (1232)
|+++|++++|+++. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996432 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred hhccEEEEccCC--CCCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1059 LRSRFGIIPQDP--TLFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1059 LR~~i~iVpQdP--~LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
+|++++|++|+| .+|..|+.+|+.... ..+ ++++.++++.+++.+... ...+.+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW----------EKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc----------cCCcccCCHHHHH
Confidence 899999999998 789999999996211 122 234677888888753211 2334689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
|++|||||+.+|+||||||||++||+.+...+.+.|++.. .+.|||+|||+++.+.. ||||++|++|++++.|+|+++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998743 47899999999999866 999999999999999999999
Q ss_pred Hhh
Q 000904 1208 MKR 1210 (1232)
Q Consensus 1208 l~~ 1210 (1232)
+.+
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 764
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=371.96 Aligned_cols=212 Identities=24% Similarity=0.371 Sum_probs=183.0
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876543 3678999
Q ss_pred EccCCCCCc-ccHHhccCCCCC---C----C----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHH
Q 000904 1066 IPQDPTLFN-GTVRYNLDPLSQ---H----T----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCL 1133 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~~~---~----s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~L 1133 (1232)
+||+|.+|. .|+++|+..... . . ++++.++++.+++.+..... ..+||+|||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHH
Confidence 999999885 599999963211 1 1 23466778888876544332 35799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1134 GRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1134 ARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||||+++|++|+|||||++||+++.+.+.+.|++..+ ++|||+||||++.+.. ||+|++|++|++++.|++++++++
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999999999999987532 6899999999998876 999999999999999999999865
Q ss_pred cC
Q 000904 1211 EG 1212 (1232)
Q Consensus 1211 ~~ 1212 (1232)
+.
T Consensus 228 ~~ 229 (239)
T cd03296 228 PA 229 (239)
T ss_pred CC
Confidence 43
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=374.56 Aligned_cols=219 Identities=26% Similarity=0.387 Sum_probs=189.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 4999999999963 469999999999999999999999999999999999975 589999999999975 3456
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----CC----CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----SQ----HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|..|+++|+... +. ..++++.++++.+++.+.+.. .....+.+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHHH
Confidence 778899999999999999999999631 11 124567888888888654432 123446789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|+||+|||||++||..+.+.+.+.|++..+++|||++|||++.+.+ ||+|++|++|++++.|++++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999986557899999999999976 9999999999999999999998
Q ss_pred hhcC
Q 000904 1209 KREG 1212 (1232)
Q Consensus 1209 ~~~~ 1212 (1232)
+++.
T Consensus 237 ~~~~ 240 (253)
T PRK14242 237 TRPR 240 (253)
T ss_pred cCCC
Confidence 7654
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=380.22 Aligned_cols=215 Identities=25% Similarity=0.386 Sum_probs=190.8
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++||+++|+...+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+..+++++++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 38999999999644456999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCC--CCCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1065 IIPQDP--TLFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1065 iVpQdP--~LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
|+||+| .++..|+++|+.... ..+ ++++.++++.++|.+.....| .+||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999999 467889999996321 122 245778888888877665544 479999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999987543 7899999999999988999999999999999999998764
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=381.72 Aligned_cols=216 Identities=25% Similarity=0.394 Sum_probs=184.2
Q ss_pred eEEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC----ChH
Q 000904 985 KVDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL----GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~ 1057 (1232)
.++++|++++|+++. +++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996432 3699999999999999999999999999999999999999999999999999754 356
Q ss_pred hhhccEEEEccCC--CCCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1058 DLRSRFGIIPQDP--TLFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP--~LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
.+|++|+|+||+| .+|..|+++|+.... ..+ ++++.++++.+++... .....+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHH
Confidence 7899999999998 588899999996321 123 2345566666666421 12234568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPM 1205 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~ 1205 (1232)
||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+.+ ||||++|++|++++.|+|+
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998753 47899999999999875 8999999999999999999
Q ss_pred HHHhh
Q 000904 1206 KLMKR 1210 (1232)
Q Consensus 1206 ~Ll~~ 1210 (1232)
+++++
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 98764
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=372.87 Aligned_cols=221 Identities=26% Similarity=0.402 Sum_probs=190.1
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC-----ccEEEECCeeCCCC--ChHh
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA-----GGKILVDGIDISKL--GLHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~~i--~l~~ 1058 (1232)
++++|++++|+. ..+++|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++... +...
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 689999999963 35999999999999999999999999999999999999998 99999999999763 4556
Q ss_pred hhccEEEEccCCCCCcccHHhccCCC---CC-CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1059 LRSRFGIIPQDPTLFNGTVRYNLDPL---SQ-HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~gTIr~NLdp~---~~-~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
.|++++|+||+|.+|..|+++|+... .. .+ ++++.++++.+++.+.+.. .....+.+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD-------RLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh-------HhhCCcccCCHHHHHH
Confidence 78899999999999999999998631 11 11 3457788888888743321 1223456899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
++|||||+++|++|+|||||++||+.+...+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++++
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999986556899999999999876 99999999999999999999987
Q ss_pred hcCCHH
Q 000904 1210 REGSLF 1215 (1232)
Q Consensus 1210 ~~~~~f 1215 (1232)
++...+
T Consensus 233 ~~~~~~ 238 (247)
T TIGR00972 233 NPKEKR 238 (247)
T ss_pred CCCChH
Confidence 655443
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=374.20 Aligned_cols=222 Identities=21% Similarity=0.325 Sum_probs=190.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 5999999999963 4699999999999999999999999999999999999997 48999999999864 3455
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|..|+++|+... +.. .++++.++++.+++.+.+. ..+++ .+.+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~----~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---DKLNT----NALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---HHHhC----CcccCCHHHHH
Confidence 678899999999999999999999632 111 2355778888888754332 22333 45789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|++|||||||++||..+...+.+.|++..+++|+|+|||+++.+.+ ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999876 9999999999999999999998
Q ss_pred hhcCCHH
Q 000904 1209 KREGSLF 1215 (1232)
Q Consensus 1209 ~~~~~~f 1215 (1232)
+++.-.|
T Consensus 238 ~~~~~~~ 244 (254)
T PRK14273 238 FNPKNTK 244 (254)
T ss_pred hCCCChH
Confidence 7654443
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=372.82 Aligned_cols=212 Identities=27% Similarity=0.409 Sum_probs=182.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i~ 1064 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..+. |.+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999963 469999999999999999999999999999999999999999999999999988876654 57799
Q ss_pred EEccCCCCCcc-cHHhccCCCC----CC-------------CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChh
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPLS----QH-------------TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMG 1126 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~~----~~-------------sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgG 1126 (1232)
|+||+|.+|.+ |+++|+.... .. .++++.++++..++.+. ......+||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG 147 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL-----------ADRPAGELSYG 147 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccch-----------hhCChhhCCHH
Confidence 99999999886 9999985321 10 12245566666665433 23345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p 1204 (1232)
||||++|||||+++|++|+|||||++||..+.+.+.+.|++.. .++|+|+||||++.+.+ ||+|++|++|++++.|++
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCH
Confidence 9999999999999999999999999999999999999998754 57899999999999977 999999999999999999
Q ss_pred hHHHhh
Q 000904 1205 MKLMKR 1210 (1232)
Q Consensus 1205 ~~Ll~~ 1210 (1232)
++++++
T Consensus 228 ~~~~~~ 233 (236)
T cd03219 228 DEVRNN 233 (236)
T ss_pred HHhccC
Confidence 998764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=373.12 Aligned_cols=215 Identities=25% Similarity=0.375 Sum_probs=187.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999742 469999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EccCCCCCc-ccHHhccCCCC---CCC----HHHHHHHHHHcCCcH--HHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1066 IPQDPTLFN-GTVRYNLDPLS---QHT----DQEIWEVLAKCHLGE--AVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~--~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
+||+|.+|. .|+++|+.... ..+ ++++.++++..++.+ .. ...+.+||||||||++|||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-----------~~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFA-----------DRYPHELSGGQQQRVGVAR 148 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHH-----------hcChhhCCHHHHHHHHHHH
Confidence 999999885 69999986321 112 345778888887764 22 2334689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcC
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~ 1212 (1232)
|++++|++|+|||||++||.++.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++++.|+++++.+++.
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 228 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPA 228 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCC
Confidence 9999999999999999999999999999998753 27899999999998876 99999999999999999999976544
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=373.29 Aligned_cols=211 Identities=27% Similarity=0.406 Sum_probs=182.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh---Hhhhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL---HDLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR~~ 1062 (1232)
++++|++++|+. .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ..+|++
T Consensus 2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 678999999962 3469999999999999999999999999999999999999999999999999987654 446889
Q ss_pred EEEEccCCCCCc-ccHHhccCCC------------CC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChh
Q 000904 1063 FGIIPQDPTLFN-GTVRYNLDPL------------SQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMG 1126 (1232)
Q Consensus 1063 i~iVpQdP~LF~-gTIr~NLdp~------------~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgG 1126 (1232)
++|+||+|.+|. .|+++|+... +. ..++++.++++.+++.+... ..+.+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHH
Confidence 999999998886 6999999521 00 12345777888887755432 234689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
||||++|||||+++|++|+|||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998753 37899999999999976 99999999999999999
Q ss_pred hhHHH
Q 000904 1204 PMKLM 1208 (1232)
Q Consensus 1204 p~~Ll 1208 (1232)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 99874
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=384.06 Aligned_cols=223 Identities=20% Similarity=0.314 Sum_probs=189.6
Q ss_pred eEEEEeeEeEecCC-----------CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC
Q 000904 985 KVDICDLQIRYRPD-----------SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK 1053 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~-----------~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~ 1053 (1232)
-++++|++++|... ...+++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 48999999999531 2468999999999999999999999999999999999999999999999999998
Q ss_pred CChH---hhhccEEEEccCC--CCC-cccHHhccCC----CC-CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccC
Q 000904 1054 LGLH---DLRSRFGIIPQDP--TLF-NGTVRYNLDP----LS-QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVE 1118 (1232)
Q Consensus 1054 i~l~---~LR~~i~iVpQdP--~LF-~gTIr~NLdp----~~-~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e 1118 (1232)
++.+ .+|++++||+||| .++ ..||.+|+.. +. ..+ ++.+.++|+.+++.+... ..
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~----------~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI----------NR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHh----------cC
Confidence 8754 4678999999999 466 5799999741 11 123 234567788888843221 22
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeC
Q 000904 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISD 1195 (1232)
Q Consensus 1119 ~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~ 1195 (1232)
.+.+||||||||++|||||+.+|++||+||||++||..+...+.+.|++.. .+.|+|+||||++.+.+ ||||+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 356899999999999999999999999999999999999999999998753 37899999999999987 999999999
Q ss_pred CEEEEecChhHHHhhcCCHHHH
Q 000904 1196 GKLAEYDEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1196 G~vvE~g~p~~Ll~~~~~~f~~ 1217 (1232)
|+++|.|+++++++++...|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999876656654
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=389.20 Aligned_cols=217 Identities=26% Similarity=0.363 Sum_probs=190.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ +++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999963 4689999999999999999999999999999999999999999999999999877654 67899
Q ss_pred EEccCCCCCc-ccHHhccCCC-C--CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFN-GTVRYNLDPL-S--QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp~-~--~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|+||++.+|. .|+++|+... . .. .++++.++++.++|.+...+. +.+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~-----------~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY-----------PGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 9999999996 6999999631 1 11 235677888888887655443 45799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCC
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGS 1213 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~ 1213 (1232)
|+++|++|+||||||+||..+.+.+.+.|++..+ +.|+|+||||++.+.. ||+|++|++|++++.|+|+++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999987543 7899999999999876 999999999999999999999998876
Q ss_pred HHH
Q 000904 1214 LFG 1216 (1232)
Q Consensus 1214 ~f~ 1216 (1232)
.|-
T Consensus 229 ~~~ 231 (353)
T TIGR03265 229 PFV 231 (353)
T ss_pred HHH
Confidence 663
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=370.49 Aligned_cols=214 Identities=27% Similarity=0.412 Sum_probs=185.4
Q ss_pred EEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH---hhh
Q 000904 986 VDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH---DLR 1060 (1232)
Q Consensus 986 I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR 1060 (1232)
|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 6899999999642 12699999999999999999999999999999999999999999999999999877644 347
Q ss_pred ccEEEEccCCCCCc-ccHHhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1061 SRFGIIPQDPTLFN-GTVRYNLDPL---SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1061 ~~i~iVpQdP~LF~-gTIr~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
++++|+||+|.+|. .|+++|+... ... .++++.++++..++.+..... ..+||+|||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAY-----------PAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 88999999999986 6999998531 111 234678888888886554433 3579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
||||++++|++|||||||++||..+...+.+.|++.. .++|||+|||+++.+.. ||++++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999998753 27899999999999877 89999999999999999999876
Q ss_pred h
Q 000904 1210 R 1210 (1232)
Q Consensus 1210 ~ 1210 (1232)
+
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 4
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=389.66 Aligned_cols=205 Identities=24% Similarity=0.350 Sum_probs=181.4
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh----hccEEEEccCCCCCc-
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL----RSRFGIIPQDPTLFN- 1074 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L----R~~i~iVpQdP~LF~- 1074 (1232)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+...+..++ |++++||||++.+|.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 469999999999999999999999999999999999999999999999999999988877 789999999999997
Q ss_pred ccHHhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000904 1075 GTVRYNLDPL---SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLD 1147 (1232)
Q Consensus 1075 gTIr~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILD 1147 (1232)
.||++|+... ... .++++.++|+.++|.++..+. +.+||||||||++|||||+++|+||+||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~-----------p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY-----------PDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5999999631 111 235678889888887655444 4579999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHH
Q 000904 1148 EATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1148 EaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f 1215 (1232)
|||++||+.+.+.+++.+++.. .++|+|+||||++.+.. ||+|++|++|++++.|+|+++++++...|
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 9999999999999999998643 37899999999998766 99999999999999999999998765444
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=374.17 Aligned_cols=221 Identities=22% Similarity=0.414 Sum_probs=190.0
Q ss_pred cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CC
Q 000904 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LG 1055 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~ 1055 (1232)
...++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 11 NIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 346999999999963 469999999999999999999999999999999999988 689999999999863 46
Q ss_pred hHhhhccEEEEccCCCCCcccHHhccCCCC---CC---CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1056 LHDLRSRFGIIPQDPTLFNGTVRYNLDPLS---QH---TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1056 l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~~---sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
..++|++++|+||+|.+|..|+++|+.... .. .++++.++++.+++.+.+. ........+||+||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHHH
Confidence 677889999999999999899999997422 11 2355677888887754322 2233455789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeC-----------CE
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISD-----------GK 1197 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~-----------G~ 1197 (1232)
|++|||||+++|++|+|||||++||..+.+.+.+.|++..++.|||+|||+++.+.+ ||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999987667899999999999877 999999996 67
Q ss_pred EEEecChhHHHhhcC
Q 000904 1198 LAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1198 vvE~g~p~~Ll~~~~ 1212 (1232)
++|.|+|+++++++.
T Consensus 242 ~~~~~~~~~~~~~~~ 256 (269)
T PRK14259 242 LVEFNETKKIFNSPK 256 (269)
T ss_pred EEEeCCHHHHHhCcC
Confidence 999999999987654
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=373.18 Aligned_cols=219 Identities=26% Similarity=0.366 Sum_probs=188.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC-----ccEEEECCeeCC--CCChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA-----GGKILVDGIDIS--KLGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~--~i~l~ 1057 (1232)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4889999999963 46999999999999999999999999999999999999874 999999999997 45566
Q ss_pred hhhccEEEEccCCCCCcc-cHHhccCCC---CC--CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhH
Q 000904 1058 DLRSRFGIIPQDPTLFNG-TVRYNLDPL---SQ--HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~g-TIr~NLdp~---~~--~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
++|++++|+||+|.+|.+ |+++|+... .. .. ++++.++++..++.+.+.. .....+.+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHHH
Confidence 788899999999999975 999999631 11 11 2456788888887543322 1233557899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
|||++||||++++|++|||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999986567899999999999876 99999999999999999999
Q ss_pred HHhhcC
Q 000904 1207 LMKREG 1212 (1232)
Q Consensus 1207 Ll~~~~ 1212 (1232)
+++++.
T Consensus 235 ~~~~~~ 240 (253)
T PRK14267 235 VFENPE 240 (253)
T ss_pred HHhCCC
Confidence 987643
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=373.91 Aligned_cols=222 Identities=24% Similarity=0.361 Sum_probs=191.2
Q ss_pred cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CC
Q 000904 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISK--LG 1055 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~ 1055 (1232)
.+.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 457999999999963 4699999999999999999999999999999999999975 89999999999975 34
Q ss_pred hHhhhccEEEEccCCCCCcccHHhccCCC---CCC------CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChh
Q 000904 1056 LHDLRSRFGIIPQDPTLFNGTVRYNLDPL---SQH------TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMG 1126 (1232)
Q Consensus 1056 l~~LR~~i~iVpQdP~LF~gTIr~NLdp~---~~~------sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgG 1126 (1232)
...+|++++|+||+|.+|.+|+++|+... ... .++++.++++.+++.+.+.. .....+.+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHH
Confidence 56788999999999999989999999631 111 13457888998888654432 123345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPM 1205 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~ 1205 (1232)
||||++|||||+.+|++|||||||++||..+...+.+.|++..++.|||+|||+++.+.. ||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999986567899999999999976 8999999999999999999
Q ss_pred HHHhhcCC
Q 000904 1206 KLMKREGS 1213 (1232)
Q Consensus 1206 ~Ll~~~~~ 1213 (1232)
+++.++..
T Consensus 248 ~~~~~~~~ 255 (267)
T PRK14235 248 KMFTNPDD 255 (267)
T ss_pred HHHhCCCC
Confidence 99865443
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=386.54 Aligned_cols=216 Identities=25% Similarity=0.388 Sum_probs=189.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+. .|++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3789999999963 469999999999999999999999999999999999999999999999999987653 467899
Q ss_pred EEccCCCCCc-ccHHhccCCC-C------CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1065 IIPQDPTLFN-GTVRYNLDPL-S------QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp~-~------~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
|+||++.+|. .|+++|+... . ..+ ++++.++|+.+++.+...+. +.+||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----------PAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 9999999997 4999999632 1 112 34677889988887655443 3579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||+++|++|+|||||++||..+.+.+.+.|++..+ ++|+|+||||++.+.. ||+|++|++|++++.|+|+++++
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999987543 6899999999999877 99999999999999999999998
Q ss_pred hcCCHH
Q 000904 1210 REGSLF 1215 (1232)
Q Consensus 1210 ~~~~~f 1215 (1232)
++...|
T Consensus 227 ~p~~~~ 232 (353)
T PRK10851 227 EPATRF 232 (353)
T ss_pred CccchH
Confidence 776544
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=380.04 Aligned_cols=215 Identities=23% Similarity=0.341 Sum_probs=184.6
Q ss_pred EEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC----CChHh
Q 000904 986 VDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK----LGLHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~----i~l~~ 1058 (1232)
++++|++++|++.. .++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 469999999999999999999999999999999999999999999999999863 34667
Q ss_pred hhccEEEEccCC--CCCcccHHhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1059 LRSRFGIIPQDP--TLFNGTVRYNLDPLS---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1059 LR~~i~iVpQdP--~LF~gTIr~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.|++++|+||+| .+|..|+++|+.... ..+. +.+.++++.++|.+... ...+.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 888999999998 688889999995211 1222 34667888888763322 2234689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
|++|||||+.+|++|||||||++||+.+...+.+.|++.. .+.|||+||||++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998753 37899999999999876 99999999999999999999
Q ss_pred HHhh
Q 000904 1207 LMKR 1210 (1232)
Q Consensus 1207 Ll~~ 1210 (1232)
++++
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8764
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=382.17 Aligned_cols=224 Identities=25% Similarity=0.356 Sum_probs=189.1
Q ss_pred eEEEEeeEeEecCC--------CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh
Q 000904 985 KVDICDLQIRYRPD--------SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL 1056 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~--------~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l 1056 (1232)
.|+++|++++|+.. ...+|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999621 2469999999999999999999999999999999999999999999999999988864
Q ss_pred H---hhhccEEEEccCCC--CCc-ccHHhccC-CC---CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCC
Q 000904 1057 H---DLRSRFGIIPQDPT--LFN-GTVRYNLD-PL---SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSN 1122 (1232)
Q Consensus 1057 ~---~LR~~i~iVpQdP~--LF~-gTIr~NLd-p~---~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~n 1122 (1232)
+ .+|++++||||||. ++. -|+.+|+. +. ... ..+++.++|+++++.+.. ++. .+.+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~~----~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH------YDR----YPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH------hcC----CCcc
Confidence 3 56789999999994 544 38887774 11 111 234578889999886422 222 3468
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEE
Q 000904 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLA 1199 (1232)
Q Consensus 1123 LSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv 1199 (1232)
||||||||++|||||+.+|++||+||||++||..+...|.+.|++.. .+.|+|+||||++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998753 37899999999999986 9999999999999
Q ss_pred EecChhHHHhhcCCHHHHH
Q 000904 1200 EYDEPMKLMKREGSLFGQL 1218 (1232)
Q Consensus 1200 E~g~p~~Ll~~~~~~f~~l 1218 (1232)
|.|+++++++++...|.+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EECCHHHHhcCCCCHHHHH
Confidence 9999999998776656543
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=371.06 Aligned_cols=222 Identities=26% Similarity=0.398 Sum_probs=191.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCCChHhh
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKLGLHDL 1059 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i~l~~L 1059 (1232)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4889999999963 4699999999999999999999999999999999999984 69999999999998888888
Q ss_pred hccEEEEccCCCCC-cccHHhccCCCC---C--C----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1060 RSRFGIIPQDPTLF-NGTVRYNLDPLS---Q--H----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1060 R~~i~iVpQdP~LF-~gTIr~NLdp~~---~--~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
|++++|+||+|.+| ..|+++|+.... . . .++++.++++.+++.+.+.. .++ ..+.+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLD----APAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhc----CCcccCCHHHHH
Confidence 99999999999755 679999995311 1 1 13567888999988654321 122 335689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|+||+|||||++||..+.+.+.+.|++..+++|+|+||||++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999986667999999999999875 9999999999999999999998
Q ss_pred hhcCCHH
Q 000904 1209 KREGSLF 1215 (1232)
Q Consensus 1209 ~~~~~~f 1215 (1232)
+++...+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14247 234 TNPRHEL 240 (250)
T ss_pred cCCccHH
Confidence 7654434
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=365.31 Aligned_cols=202 Identities=27% Similarity=0.378 Sum_probs=174.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ..+++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 468999999953 46999999999999999999999999999999999999999999999999997654 34678999
Q ss_pred EccCCCCCc-ccHHhccCCCC---CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFN-GTVRYNLDPLS---QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~~---~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|. .|+++|+.... .. .++++.++++.+++.+..... ..+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY-----------PHELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHHHHHH
Confidence 999998885 69999986311 11 134577888888887654443 357999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
+++|++|||||||++||.++...+.+.|++.. .++|||+||||++.+.+ ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999998753 37899999999999877 9999999999998865
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=378.62 Aligned_cols=214 Identities=26% Similarity=0.432 Sum_probs=186.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCC--CCChHhhhcc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS--KLGLHDLRSR 1062 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~--~i~l~~LR~~ 1062 (1232)
.|+++|++++|++ .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+. ..+..++|++
T Consensus 5 ~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4899999999963 346999999999999999999999999999999999999999999999999984 3456678999
Q ss_pred EEEEccCC--CCCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHH
Q 000904 1063 FGIIPQDP--TLFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCL 1133 (1232)
Q Consensus 1063 i~iVpQdP--~LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~L 1133 (1232)
++|+||+| .+|+.|+++|+.... ..+ ++++.++++.+++.+... ..+.+||+|||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHHH
Confidence 99999999 578999999996311 122 244677788888865432 2356899999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1134 GRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1134 ARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||||+.+|+||||||||++||+++.+.+.+.|++..+ ++|||++||+++.+.+ ||||++|++|++++.|+++++++.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999987543 7899999999999975 999999999999999999998764
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=380.58 Aligned_cols=215 Identities=22% Similarity=0.291 Sum_probs=184.0
Q ss_pred eEEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC--------
Q 000904 985 KVDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK-------- 1053 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~-------- 1053 (1232)
.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 378999999996432 259999999999999999999999999999999999999999999999887632
Q ss_pred ----------------CChHhhhccEEEEccCC--CCCcccHHhccCCCC---CCC----HHHHHHHHHHcCCc-HHHHh
Q 000904 1054 ----------------LGLHDLRSRFGIIPQDP--TLFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLG-EAVRE 1107 (1232)
Q Consensus 1054 ----------------i~l~~LR~~i~iVpQdP--~LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~-~~i~~ 1107 (1232)
.+..++|++++|+||+| .+|..||++|+.... ..+ ++++.++++.++|. +...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~- 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ- 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-
Confidence 13467789999999987 688899999996321 122 34567888888885 3332
Q ss_pred hccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh
Q 000904 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1108 ~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~ 1186 (1232)
..+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+||||++.+.+
T Consensus 161 ----------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 161 ----------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 2346899999999999999999999999999999999999999999998753 47899999999998866
Q ss_pred -cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1187 -CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1187 -~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||||++|++|++++.|+|++++++
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999865
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=359.81 Aligned_cols=199 Identities=25% Similarity=0.400 Sum_probs=181.5
Q ss_pred EEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhcc
Q 000904 986 VDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1062 (1232)
++++||+++|++.. +++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999997542 3699999999999999999999999999999999999999999999998 6
Q ss_pred EEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000904 1063 FGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1063 i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
++|+||+|.+|++|+++|+......++++.+++++.+++.+.+...|.|+++.+.+.+.+||+|||||++||||++++|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998654556677889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHH-HHHHhc-CCcEEEEEecChhhhhhcCeEEEEeCCE
Q 000904 1143 ILVLDEATASIDNATDMILQK-TIRAEF-ADCTVITVAHRIPTVMDCTMVLAISDGK 1197 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~-~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~~G~ 1197 (1232)
+++|||||++||.++.+.+.+ .+++.. ++.|||++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999777766 566543 3689999999999999999999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=380.21 Aligned_cols=217 Identities=24% Similarity=0.381 Sum_probs=194.5
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
..|+++||+.+|+ ...+++|+|++|++||.+.+.|||||||||++++|+|+..|++|+|.+||.||..++.+ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 3599999999997 45799999999999999999999999999999999999999999999999999998887 5789
Q ss_pred EEEccCCCCCcc-cHHhccCCC-C---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPL-S---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~-~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
++|+|+..||.. ||++|+... . ...+ +++.++|+.++|.++-.+.| ++|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 999999999965 999998631 1 1232 36889999999999877766 47999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
|||..+|++|+||||-|+||..-...+|.-|++.. .+.|.|+||||-+.... +|||.||++|+|...|+|+|+..+|
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999988877632 37899999999887766 9999999999999999999999998
Q ss_pred CCHH
Q 000904 1212 GSLF 1215 (1232)
Q Consensus 1212 ~~~f 1215 (1232)
...|
T Consensus 229 ~~~f 232 (352)
T COG3842 229 ATRF 232 (352)
T ss_pred chHH
Confidence 8777
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=367.90 Aligned_cols=208 Identities=27% Similarity=0.376 Sum_probs=179.8
Q ss_pred eEEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh---h
Q 000904 985 KVDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD---L 1059 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---L 1059 (1232)
.++++|++++|+.+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+|+.+++.++ +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999996432 46999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-ccEEEEccCCCCCcc-cHHhccCC---CCCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1060 R-SRFGIIPQDPTLFNG-TVRYNLDP---LSQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1060 R-~~i~iVpQdP~LF~g-TIr~NLdp---~~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
| ++++|+||+|.+|.+ |+++|+.. +... .++++.++++.+++.+...+ .+.+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH-----------RPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHH
Confidence 3 679999999998865 99999853 1111 23457788888877654333 345799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~ 1203 (1232)
++||||++++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+..+|++++|++|++++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998753 4789999999999999999999999999998765
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=413.69 Aligned_cols=191 Identities=23% Similarity=0.301 Sum_probs=163.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|.. ..|+++|++|++||.+||+|+||||||||+++|+|+.+|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 4899999999953 35999999999999999999999999999999999999999999986 1699
Q ss_pred EEccCCCC-CcccHHhccCCCC-CC-CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1065 IIPQDPTL-FNGTVRYNLDPLS-QH-TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1065 iVpQdP~L-F~gTIr~NLdp~~-~~-sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
|+||++.+ ++.|+++|+.... .+ .+..+.++|+..++.+.... ...+||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~-----------~~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDK-----------NVKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhC-----------CcccCCHHHHHHHHHHHHHhcCC
Confidence 99999874 5679999986321 12 23456788888888654333 23579999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
+||||||||++||.++...+.+.|++.. .++|+|+||||++.+.. ||||++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 9999999999999999999999999753 37899999999999887 999999964 7776665
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=365.43 Aligned_cols=212 Identities=25% Similarity=0.395 Sum_probs=179.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i~ 1064 (1232)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 478999999963 369999999999999999999999999999999999999999999999999988876654 67799
Q ss_pred EEccCCCCCcc-cHHhccCCCCC-C----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPLSQ-H----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL 1138 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~~~-~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL 1138 (1232)
|+||+|.+|.+ |+++|+..... . ..+++.++++..+ +++......+.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP----------RLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH----------hhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 99999999886 99999964221 1 1223344444431 1222233445689999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1139 ~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
++|++|+|||||++||.++.+.+.+.|++.. .++|+|++||+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999998754 47899999999999877 99999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=352.53 Aligned_cols=219 Identities=26% Similarity=0.364 Sum_probs=184.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.+++++++.+|.. ..||+|+||+|++||.|+|+||||||||||++++.|+.+|++|+|.+||.++..- ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4889999999974 5799999999999999999999999999999999999999999999999888443 45899
Q ss_pred EEccCCCCCc-ccHHhccCCCCC-------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFN-GTVRYNLDPLSQ-------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp~~~-------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
||+|++.||. -||++|+...-+ ...+.+.++|+++||.++-...|. +||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHH
Confidence 9999999995 599999863211 134568899999999998877664 799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeC--CEE---EEec--ChhH
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISD--GKL---AEYD--EPMK 1206 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~--G~v---vE~g--~p~~ 1206 (1232)
|+.+|+||+||||.++||..|...+|+.|.+.. .++||++||||++.... +|||+||.+ |+| ++.+ .|.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rpR- 223 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPR- 223 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCCc-
Confidence 999999999999999999999999999887643 36899999999987766 999999999 544 3333 344
Q ss_pred HHhhcCCHHHHHHHHHHh
Q 000904 1207 LMKREGSLFGQLVREYWS 1224 (1232)
Q Consensus 1207 Ll~~~~~~f~~l~~~~~~ 1224 (1232)
...+..|..+.++-..
T Consensus 224 --~~~~~~f~~l~~~i~~ 239 (248)
T COG1116 224 --IRGDPEFLELREELLE 239 (248)
T ss_pred --cccChHHHHHHHHHHH
Confidence 2335667777766554
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=386.92 Aligned_cols=218 Identities=26% Similarity=0.422 Sum_probs=190.9
Q ss_pred cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCc--cEEEECCeeCCCCChHhhh
Q 000904 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG--GKILVDGIDISKLGLHDLR 1060 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~--G~I~IDG~dI~~i~l~~LR 1060 (1232)
.|.++++|++++|+. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++ |+|.+||.++...+.+ +
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~--~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH--K 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--H
Confidence 367999999999963 469999999999999999999999999999999999999999 9999999999876653 5
Q ss_pred ccEEEEccCCCCCcc-cHHhccCC-CC--CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1061 SRFGIIPQDPTLFNG-TVRYNLDP-LS--QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1061 ~~i~iVpQdP~LF~g-TIr~NLdp-~~--~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
++++|++|++.+|.. |+++|+.. .. ..+ ++++.++++.++|.+...+.| .+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999966 99999962 11 122 245777888888876655544 479999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC---CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA---DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~---~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|||||+++|++|+|||||++||..+...+.+.|++..+ +.|+|+||||++.+.. ||+|++|++|++++.|+|++++
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999887433 6899999999999876 9999999999999999999999
Q ss_pred hhcCCHH
Q 000904 1209 KREGSLF 1215 (1232)
Q Consensus 1209 ~~~~~~f 1215 (1232)
+++...|
T Consensus 228 ~~p~~~~ 234 (362)
T TIGR03258 228 DAPADGF 234 (362)
T ss_pred hCcCcHH
Confidence 8876555
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=371.37 Aligned_cols=218 Identities=28% Similarity=0.382 Sum_probs=187.8
Q ss_pred cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC--------
Q 000904 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL-------- 1054 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i-------- 1054 (1232)
.+.++++|++++|++ ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 356999999999963 4699999999999999999999999999999999999999999999999998642
Q ss_pred -----ChHhhhccEEEEccCCCCCcc-cHHhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCC
Q 000904 1055 -----GLHDLRSRFGIIPQDPTLFNG-TVRYNLDPL----SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120 (1232)
Q Consensus 1055 -----~l~~LR~~i~iVpQdP~LF~g-TIr~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G 1120 (1232)
....+|++++|+||+|.+|.+ |+++|+... ... .++++.++++..++.+.... ..+
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQG----------KYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhh----------CCc
Confidence 135678899999999999974 999998621 111 23457788888888665321 234
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEE
Q 000904 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKL 1198 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~v 1198 (1232)
.+||||||||++|||||+++|++|||||||++||.++.+.+.+.|++.. .++|+|+||||++.+.+ ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999999998753 47999999999999987 899999999999
Q ss_pred EEecChhHHHhhcC
Q 000904 1199 AEYDEPMKLMKREG 1212 (1232)
Q Consensus 1199 vE~g~p~~Ll~~~~ 1212 (1232)
++.|+++++++.+.
T Consensus 231 ~~~~~~~~~~~~~~ 244 (257)
T PRK10619 231 EEEGAPEQLFGNPQ 244 (257)
T ss_pred EEeCCHHHhhhCcc
Confidence 99999999986543
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=389.58 Aligned_cols=213 Identities=26% Similarity=0.441 Sum_probs=190.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++.+++..++|++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4889999999963 56999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCC-CcccHHhccCCC--------C---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1065 IIPQDPTL-FNGTVRYNLDPL--------S---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1065 iVpQdP~L-F~gTIr~NLdp~--------~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
++||+|.+ |..|+++|+... . ..++++++++++.+++.+...+. ..+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----------~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----------VTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHH
Confidence 99999986 688999998531 1 11245688999999997655332 3579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|||||+++|+||+|||||++||..+...+.+.|++.. .+.|||+++|+++.+.. |||+++|++|++++.|+|++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999998754 47899999999999966 999999999999999999999864
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=363.81 Aligned_cols=208 Identities=27% Similarity=0.391 Sum_probs=180.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ..++|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999998763 3567889999
Q ss_pred EccCCCCCcc-cHHhccCCC----CC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPL----SQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~----~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.++.+ |+++|+... +. ..++++.++++.+++.+..... ..+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999998875 999998531 11 1234678889999887654433 247999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
+.+|++|+|||||++||.++.+.+.+.|++..+ ++|||+|||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999987532 6899999999999887 999999999999999988764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=375.69 Aligned_cols=217 Identities=24% Similarity=0.335 Sum_probs=186.1
Q ss_pred EEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh----hcc
Q 000904 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL----RSR 1062 (1232)
Q Consensus 987 ~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L----R~~ 1062 (1232)
.++|++.+|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 45688888853 469999999999999999999999999999999999999999999999999988765543 468
Q ss_pred EEEEccCCCCC-cccHHhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1063 FGIIPQDPTLF-NGTVRYNLDPL---SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1063 i~iVpQdP~LF-~gTIr~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
++|+||+|.+| ..|+++|+... ... .++++.++++.+++.+.....| .+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999999988 46999998631 111 2345778888888876655443 47999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
|||+++|+||||||||++||..+.+.+.+.|++.. .++|+|++||+++.+.+ ||+|++|++|++++.|+++++++++
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999998753 37899999999999876 9999999999999999999998766
Q ss_pred CCHHH
Q 000904 1212 GSLFG 1216 (1232)
Q Consensus 1212 ~~~f~ 1216 (1232)
...|.
T Consensus 253 ~~~~~ 257 (269)
T cd03294 253 ANDYV 257 (269)
T ss_pred CcHHH
Confidence 55443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=373.49 Aligned_cols=215 Identities=26% Similarity=0.420 Sum_probs=187.9
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+.+.+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+..++|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 48999999999644457999999999999999999999999999999999999999999999999998887788899999
Q ss_pred EEccCC--CCCcccHHhccCCC---CCCCHH----HHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1065 IIPQDP--TLFNGTVRYNLDPL---SQHTDQ----EIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1065 iVpQdP--~LF~gTIr~NLdp~---~~~sd~----eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
|+||+| .++..|+++|+... ...+++ ++.++++++++.+..... ..+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHHHH
Confidence 999998 45678999999632 112322 356777888876654443 3589999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||+++|++|+|||||++||..+.+.+.+.|++..+ +.|+|++||+++.+..||+|++|++|++++.|++++++++
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999987543 4899999999999888999999999999999999998764
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=371.78 Aligned_cols=223 Identities=24% Similarity=0.306 Sum_probs=189.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH---hhhc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH---DLRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR~ 1061 (1232)
.|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4899999999953 4699999999999999999999999999999999999999999999999999876543 4578
Q ss_pred cEEEEccCCCCCcc-cHHhccCC----CCCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1062 RFGIIPQDPTLFNG-TVRYNLDP----LSQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~g-TIr~NLdp----~~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
+++|+||++.+|.+ |+++|+.. ....+ ++++.++|+.+++.+.... ...+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-----------MPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHH
Confidence 89999999999976 99999863 11122 2346677888877654332 23579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||+++|++|||||||++||..+.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|+++++++
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998753 26899999999999987 99999999999999999999987
Q ss_pred hcCCHHHHHHH
Q 000904 1210 REGSLFGQLVR 1220 (1232)
Q Consensus 1210 ~~~~~f~~l~~ 1220 (1232)
++....+.++.
T Consensus 234 ~~~~~~~~~~~ 244 (269)
T PRK11831 234 NPDPRVRQFLD 244 (269)
T ss_pred CCcHHHHHHHH
Confidence 65444555553
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=364.41 Aligned_cols=205 Identities=27% Similarity=0.414 Sum_probs=177.9
Q ss_pred EEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 986 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
++++|++++|+... +++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68899999996421 169999999999999999999999999999999999999999999999999976 456778999
Q ss_pred EEEccCCCCCcc-cHHhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPL---SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
+|+||+|.+|.+ |+++|+... ... .++++.++++.+++.+.... .+.+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999885 999998521 111 23467788888888665443 34579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
|++++|++|+|||||++||+.+.+.+.+.|++.. +++|+|+||||++.+.+ ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998753 47899999999999877 8999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=388.38 Aligned_cols=216 Identities=22% Similarity=0.344 Sum_probs=188.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 3889999999963 4699999999999999999999999999999999999999999999999999876643 56899
Q ss_pred EEccCCCCCcc-cHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|+||++.+|.. |+++|+.... ..+ ++++.++++.+++.+...+. ..+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~-----------~~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999965 9999996321 122 34578888888887654443 34799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCC
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGS 1213 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~ 1213 (1232)
|+++|++|+|||||++||..+.+.+.+.|++..+ +.|+|+||||++.+.. ||+|++|++|++++.|+|+++++++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999987532 7899999999998876 999999999999999999999987665
Q ss_pred HH
Q 000904 1214 LF 1215 (1232)
Q Consensus 1214 ~f 1215 (1232)
.|
T Consensus 228 ~~ 229 (369)
T PRK11000 228 RF 229 (369)
T ss_pred HH
Confidence 54
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=365.99 Aligned_cols=211 Identities=26% Similarity=0.390 Sum_probs=182.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+.+. +++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 688999999953 46999999999999999999999999999999999999999999999999998776543 458999
Q ss_pred EccCCCC-CcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTL-FNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~L-F~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+ +..|+++|+.... ..+ ++++.+.++..++.+. ....+.+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999987 5789999996422 112 2345667777666443 2334568999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+++|+||+|||||++||..+.+.+.+.|++.. .++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999998754 37899999999999988999999999999999999999865
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=370.50 Aligned_cols=222 Identities=25% Similarity=0.376 Sum_probs=188.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||+++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999963 469999999999999999999999999999999999997 479999999999864 3455
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCC---CC-----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLS---QH-----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~~-----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|+.++|+||+|.+|+.|+++|+.... .. .++++.++++.+++++... ..+ ...+.+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~----~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK---DNL----DRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH---HHh----ccChhhCCHHHHH
Confidence 6788999999999999999999996321 11 1245677888887753211 112 2345689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++++|++|||||||++||+++.+.+.+.|++..++.|||+|||+++.+.+ ||+|++|++|++++.|++++++
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999887 8999999999999999999998
Q ss_pred hhcCCHH
Q 000904 1209 KREGSLF 1215 (1232)
Q Consensus 1209 ~~~~~~f 1215 (1232)
..+.-.|
T Consensus 235 ~~~~~~~ 241 (251)
T PRK14251 235 IAPKKQI 241 (251)
T ss_pred hCCCCHH
Confidence 7654434
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=369.43 Aligned_cols=221 Identities=25% Similarity=0.397 Sum_probs=189.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcc---ccC--CccEEEECCeeCCCC--ChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL---VEP--AGGKILVDGIDISKL--GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl---~ep--~~G~I~IDG~dI~~i--~l~ 1057 (1232)
.++++|++++|++ ..+|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 4889999999963 4699999999999999999999999999999999997 454 589999999999764 346
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC---CC-----CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL---SQ-----HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~---~~-----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|.+|+++|+... .. ..+++++++++.+++.+.+.. .....+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHHH
Confidence 778899999999999989999998631 11 123457788888888654432 123456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|++|||||||++||..+.+.+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|++++++
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987668999999999999876 9999999999999999999998
Q ss_pred hhcCCH
Q 000904 1209 KREGSL 1214 (1232)
Q Consensus 1209 ~~~~~~ 1214 (1232)
+++...
T Consensus 234 ~~~~~~ 239 (250)
T PRK14245 234 TNPEKE 239 (250)
T ss_pred cCCCCh
Confidence 765443
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=374.47 Aligned_cols=213 Identities=22% Similarity=0.352 Sum_probs=187.9
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+.+ ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++|
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999533 359999999999999999999999999999999999999999999999999988777888999999
Q ss_pred EccCCC--CCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1066 IPQDPT--LFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1066 VpQdP~--LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
+||+|. +|..|+++|+.... ..+ ++++.++++.+++.+.....+ ..||+|||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHHH
Confidence 999984 78889999996211 122 345788899988876554443 4799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|+.+|++|||||||++||..+.+.+.+.|++..+ +.|||++||+++.+.+ ||||++|++|++++.|+++++++.
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999999987543 7899999999999965 999999999999999999999764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=371.51 Aligned_cols=221 Identities=22% Similarity=0.377 Sum_probs=189.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCCCC--hHh
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISKLG--LHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~i~--l~~ 1058 (1232)
-+++|++++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.++|.++.+.+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 468899999953 469999999999999999999999999999999999986 47999999999987653 346
Q ss_pred hhccEEEEccCCCCCcccHHhccCCC---CC------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1059 LRSRFGIIPQDPTLFNGTVRYNLDPL---SQ------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~gTIr~NLdp~---~~------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
+|++++|+||+|.+|.+|+++|+... .. ..++++.++++.+++.+.+.. .+...+.+||+||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGD-------RLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhh-------HhhcChhhCCHHHHH
Confidence 78899999999999999999998631 11 123457788898888653321 123345689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++++|+||+|||||++||..+.+.+.+.|++..+++|+|+||||++.+.+ ||+|++|++|++++.|++++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987668999999999999876 9999999999999999999999
Q ss_pred hhcCCHH
Q 000904 1209 KREGSLF 1215 (1232)
Q Consensus 1209 ~~~~~~f 1215 (1232)
+++...+
T Consensus 237 ~~~~~~~ 243 (251)
T PRK14244 237 KNPQSSK 243 (251)
T ss_pred cCCCChH
Confidence 8765544
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=364.37 Aligned_cols=202 Identities=30% Similarity=0.431 Sum_probs=173.8
Q ss_pred EEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh----h
Q 000904 986 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD----L 1059 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~----L 1059 (1232)
++++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+ .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996421 46999999999999999999999999999999999999999999999999998876433 4
Q ss_pred hccEEEEccCCCCCcc-cHHhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1060 RSRFGIIPQDPTLFNG-TVRYNLDPL---SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1060 R~~i~iVpQdP~LF~g-TIr~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
|++++|+||+|.+|.+ |+++|+... ... .++++.++++.+++.+.... .+.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNH-----------YPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhc-----------ChhhcCHHHHHHH
Confidence 5789999999999876 999998632 111 23457788888877654433 3358999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCeEEEEeCCEE
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMDCTMVLAISDGKL 1198 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~~DrVlVL~~G~v 1198 (1232)
+|||||+++|++|+|||||++||+++.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999997643 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=368.24 Aligned_cols=216 Identities=25% Similarity=0.327 Sum_probs=192.2
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
+.|+++|++++ + .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+|| ++
T Consensus 38 ~~l~i~nls~~---~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~i 100 (282)
T cd03291 38 NNLFFSNLCLV---G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RI 100 (282)
T ss_pred CeEEEEEEEEe---c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------EE
Confidence 56999999985 2 4599999999999999999999999999999999999999999999998 49
Q ss_pred EEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000904 1064 GIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI 1143 (1232)
Q Consensus 1064 ~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kI 1143 (1232)
+|+||+|.+|.+|+++|+.......+.++.++++.+++.+.+..+|.++++.+.+.+.+||+|||||++|||||+++|++
T Consensus 101 ~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i 180 (282)
T cd03291 101 SFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL 180 (282)
T ss_pred EEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999975333445567788888999999988999999999889999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHH-HHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHH
Q 000904 1144 LVLDEATASIDNATDMILQKT-IRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1144 LILDEaTs~LD~~T~~~Iq~~-L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~ 1217 (1232)
|||||||++||+++...+.+. +++...+.|||+|||+++.+..||+|++|++|+++++|+++++.+. ...|.+
T Consensus 181 LiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~ 254 (282)
T cd03291 181 YLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSS 254 (282)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHH
Confidence 999999999999999888765 4444457899999999999988999999999999999999999864 334443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=384.82 Aligned_cols=216 Identities=23% Similarity=0.397 Sum_probs=191.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|+|+.+|++|+|.+||.++..++.+ +++++
T Consensus 14 ~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 89 (375)
T PRK09452 14 LVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVN 89 (375)
T ss_pred eEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999877654 57899
Q ss_pred EEccCCCCCcc-cHHhccCC-CC--CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFNG-TVRYNLDP-LS--QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp-~~--~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|+||++.+|.. ||++|+.. .. ..+ ++++.++++.+++.+...+.| .+||||||||++||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 99999963 11 122 345778888888887766554 4799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCC
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGS 1213 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~ 1213 (1232)
|+++|++|+||||||+||..+.+.+.+.|++..+ +.|+|+||||++.+.. +|+|++|++|++++.|+|+++++++..
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~ 238 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKN 238 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999987543 7899999999999876 999999999999999999999988765
Q ss_pred HH
Q 000904 1214 LF 1215 (1232)
Q Consensus 1214 ~f 1215 (1232)
.|
T Consensus 239 ~~ 240 (375)
T PRK09452 239 LF 240 (375)
T ss_pred HH
Confidence 55
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=367.78 Aligned_cols=222 Identities=23% Similarity=0.400 Sum_probs=190.2
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc--C---CccEEEECCeeCCCC--Ch
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE--P---AGGKILVDGIDISKL--GL 1056 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e--p---~~G~I~IDG~dI~~i--~l 1056 (1232)
|.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++... ..
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 67999999999963 469999999999999999999999999999999999986 4 689999999999753 34
Q ss_pred HhhhccEEEEccCCCCCc-ccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhH
Q 000904 1057 HDLRSRFGIIPQDPTLFN-GTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1057 ~~LR~~i~iVpQdP~LF~-gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
..+|++++|+||+|.+|. .|+++|+... +..+ ++++.++++.+++.+.+... ....+.+||+||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-------LKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-------hhCCcCcCCHHH
Confidence 567889999999999887 5999999631 1111 34567788888886544322 123467899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
|||++||||++++|++|||||||++||..+.+.+.+.|++..++.|||++||+++.+.+ ||++++|++|++++.|++++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999976 99999999999999999999
Q ss_pred HHhhcCCH
Q 000904 1207 LMKREGSL 1214 (1232)
Q Consensus 1207 Ll~~~~~~ 1214 (1232)
++.++...
T Consensus 234 ~~~~~~~~ 241 (252)
T PRK14256 234 IFTTPEKK 241 (252)
T ss_pred HHhCCCcH
Confidence 98765543
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=351.08 Aligned_cols=178 Identities=34% Similarity=0.539 Sum_probs=165.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+...+++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 478999999965434699999999999999999999999999999999999999999999999998776 6678899999
Q ss_pred EccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000904 1066 IPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV 1145 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILI 1145 (1232)
+||+|.+|+.|+++|+ +.+||+|||||++||||++++|++|+
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999987 35799999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEec
Q 000904 1146 LDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1146 LDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g 1202 (1232)
|||||++||.++.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999876789999999999999889999999999998864
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=359.50 Aligned_cols=198 Identities=27% Similarity=0.397 Sum_probs=173.1
Q ss_pred EEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEE
Q 000904 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGII 1066 (1232)
Q Consensus 987 ~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iV 1066 (1232)
+++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 367999999632 469999999999999999999999999999999999999999999999998864 4567889999
Q ss_pred ccCC--CCCcccHHhccCCCC---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1067 PQDP--TLFNGTVRYNLDPLS---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1067 pQdP--~LF~gTIr~NLdp~~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
||+| .+|..|+++|+.... ...++++.++++.+++.+.....| ..||||||||++|||||+++|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCC
Confidence 9998 467889999996422 123457889999999876644433 479999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhh-cCeEEEEeCCEEE
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMD-CTMVLAISDGKLA 1199 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv 1199 (1232)
++|+|||||++||+++.+.+.+.|++. .+++|+|++||+++.+.+ ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999875 357899999999999986 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=370.02 Aligned_cols=222 Identities=22% Similarity=0.354 Sum_probs=189.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCC--ChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKL--GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1057 (1232)
.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 5999999999963 4699999999999999999999999999999999999985 799999999998653 345
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
.+|+.++|+||+|.+|..|+++|+... ...+ ++++.++++.+++.+.... .+ .....+||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~----~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSD---RL----KSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhh---hh----cCChhhCCHHHHHH
Confidence 678899999999999999999999631 1122 2346778888887543211 12 23456899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
++|||||+++|+||+|||||++||.++...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+|+++++
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999986567899999999999977 99999999999999999999987
Q ss_pred hcCCHH
Q 000904 1210 REGSLF 1215 (1232)
Q Consensus 1210 ~~~~~f 1215 (1232)
++...+
T Consensus 243 ~~~~~~ 248 (258)
T PRK14268 243 NPREKS 248 (258)
T ss_pred CCCCHH
Confidence 654443
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=370.24 Aligned_cols=219 Identities=26% Similarity=0.437 Sum_probs=190.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.|+++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 20 ~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 20 ALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred EEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 5999999999953 469999999999999999999999999999999999997 579999999999864 3466
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|+.++|+||+|.+|.+|+++|+... +.. .++++.++++.+++.+.+.. .....+.+||+||||
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~q 170 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGGQQQ 170 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHHHHH
Confidence 778999999999999999999999631 111 23457778888888654422 234456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++++|++|+|||||++||..+...+.+.|++..++.|+|+|||+++.+.+ ||+|++|++|++++.|++++++
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999876 9999999999999999999998
Q ss_pred hhcC
Q 000904 1209 KREG 1212 (1232)
Q Consensus 1209 ~~~~ 1212 (1232)
+.+.
T Consensus 251 ~~~~ 254 (267)
T PRK14237 251 TNPK 254 (267)
T ss_pred cCCC
Confidence 7543
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=370.84 Aligned_cols=224 Identities=25% Similarity=0.381 Sum_probs=187.4
Q ss_pred EEEEeeEeEecCC-------CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh
Q 000904 986 VDICDLQIRYRPD-------SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~~~-------~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~ 1058 (1232)
++++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.++
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 356999999999999999999999999999999999999999999999999998876543
Q ss_pred ---hhccEEEEccCCC--CC-cccHHhccCC----CCC----CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1059 ---LRSRFGIIPQDPT--LF-NGTVRYNLDP----LSQ----HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1059 ---LR~~i~iVpQdP~--LF-~gTIr~NLdp----~~~----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
+|++++|+||+|. ++ ..|+++|+.. ... ..++++.++++.+++.+.. ....+.+||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED----------ADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh----------hhCChhhCC
Confidence 6788999999983 44 4699999841 111 1234577888888775322 122346899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~ 1201 (1232)
||||||++|||||+.+|++|+|||||++||.++.+.+.+.|++..+ +.|||+|||+++.+.+ ||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999987533 7899999999999986 999999999999999
Q ss_pred cChhHHHhhcCCHHHHHH
Q 000904 1202 DEPMKLMKREGSLFGQLV 1219 (1232)
Q Consensus 1202 g~p~~Ll~~~~~~f~~l~ 1219 (1232)
|+++++++.++...+.+.
T Consensus 233 g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred CCHHHHcCCCCHHHHHHH
Confidence 999999875433444444
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=359.50 Aligned_cols=202 Identities=29% Similarity=0.403 Sum_probs=178.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+. .++|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 468999999952 4699999999999999999999999999999999999999999999999998764 567889999
Q ss_pred EccCCCCC-cccHHhccCCCC---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1066 IPQDPTLF-NGTVRYNLDPLS---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1066 VpQdP~LF-~gTIr~NLdp~~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
+||+|.+| ..|+++|+.... ..+++++.++++..++.+..... +..||||||||++||||++++|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 99999877 579999986421 23567788999999987665443 3479999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
++|+|||||++||..+.+.+.+.|++.. .++|+|++|||++.+.+ ||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998753 47899999999999976 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=373.29 Aligned_cols=216 Identities=27% Similarity=0.410 Sum_probs=190.0
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCc---cEEEECCeeCCCCChHhhh
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG---GKILVDGIDISKLGLHDLR 1060 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~---G~I~IDG~dI~~i~l~~LR 1060 (1232)
+.|+++|++++|++...++|+|+||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 3589999999996433469999999999999999999999999999999999999987 8999999999888777888
Q ss_pred ccEEEEccCC--CCCcccHHhccCCC---CCCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1061 SRFGIIPQDP--TLFNGTVRYNLDPL---SQHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1061 ~~i~iVpQdP--~LF~gTIr~NLdp~---~~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
++++|+||+| .+++.|+++|+... ...++ +++.++++.+++.+.....| .+||+|||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999999 46788999999632 11233 34778899888876554443 58999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHh
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
+|||||+++|++|||||||++||..+...+.+.|++..+ ++|||++||+++.+..||++++|++|++++.|++++++.
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999987543 789999999999998899999999999999999999876
Q ss_pred h
Q 000904 1210 R 1210 (1232)
Q Consensus 1210 ~ 1210 (1232)
+
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 4
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=379.05 Aligned_cols=226 Identities=19% Similarity=0.320 Sum_probs=187.2
Q ss_pred eEEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc----CCccEEEECCeeCCCCChHh
Q 000904 985 KVDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE----PAGGKILVDGIDISKLGLHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e----p~~G~I~IDG~dI~~i~l~~ 1058 (1232)
.++++|++++|+... ..+|+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 378999999996432 359999999999999999999999999999999999998 48999999999999988766
Q ss_pred hhc----cEEEEccCCC--CCc-ccHHhc----cCCCCCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCC
Q 000904 1059 LRS----RFGIIPQDPT--LFN-GTVRYN----LDPLSQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNW 1123 (1232)
Q Consensus 1059 LR~----~i~iVpQdP~--LF~-gTIr~N----Ldp~~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nL 1123 (1232)
+|+ +++||||||. ++. -|+.++ +...... .++++.++|++++|.+.... ....+.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR--------LDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhCCchhC
Confidence 543 6999999995 332 255544 3322111 23567889999998653211 12345689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 000904 1124 SMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1124 SgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE 1200 (1232)
|||||||++|||||+.+|++||+||||++||..+...+.+.|++.. .+.|+|+||||++.+.. ||||+||++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998753 37899999999999965 99999999999999
Q ss_pred ecChhHHHhhcCCHHHHH
Q 000904 1201 YDEPMKLMKREGSLFGQL 1218 (1232)
Q Consensus 1201 ~g~p~~Ll~~~~~~f~~l 1218 (1232)
.|+++++++++...|.+.
T Consensus 235 ~g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQA 252 (326)
T ss_pred ECCHHHHhhCCCChHHHH
Confidence 999999998876666543
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=368.62 Aligned_cols=217 Identities=25% Similarity=0.394 Sum_probs=186.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC----------
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG---------- 1055 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---------- 1055 (1232)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 478999999963 46999999999999999999999999999999999999999999999999997653
Q ss_pred ---hHhhhccEEEEccCCCCCc-ccHHhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCC
Q 000904 1056 ---LHDLRSRFGIIPQDPTLFN-GTVRYNLDPL----SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNW 1123 (1232)
Q Consensus 1056 ---l~~LR~~i~iVpQdP~LF~-gTIr~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nL 1123 (1232)
...+|++++|+||+|.+|. .|+++|+... ... .++++.++++.+++.+.... .+.+|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADH-----------MPAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhc-----------Chhhc
Confidence 2467889999999998884 7999999631 111 23457788888877655443 34579
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 000904 1124 SMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1124 SgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE 1200 (1232)
|||||||++|||||+++|++|+|||||++||..+...+.+.|++..+ +.|+|+|||+++.+.+ ||++++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987543 7899999999999976 99999999999999
Q ss_pred ecChhHHHhhcCCHH
Q 000904 1201 YDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1201 ~g~p~~Ll~~~~~~f 1215 (1232)
.|+++++.+++...+
T Consensus 228 ~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 228 QGKPDEIFRQPKEER 242 (252)
T ss_pred eCCHHHHhcCCCcHH
Confidence 999999987654333
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=368.32 Aligned_cols=221 Identities=22% Similarity=0.353 Sum_probs=188.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc--C---CccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE--P---AGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e--p---~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 4899999999963 369999999999999999999999999999999999997 3 59999999999864 4456
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|.+|+++|+... +..+ ++++.++++..++.+.+.. .....+.+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD-------RLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 778899999999999999999998532 1112 2345667888887654322 123355689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++++|+||+|||||++||.++...+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999986667899999999999876 9999999999999999999998
Q ss_pred hhcCCH
Q 000904 1209 KREGSL 1214 (1232)
Q Consensus 1209 ~~~~~~ 1214 (1232)
.++...
T Consensus 243 ~~~~~~ 248 (259)
T PRK14274 243 SNPDDQ 248 (259)
T ss_pred hCCCCH
Confidence 765543
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=360.78 Aligned_cols=202 Identities=31% Similarity=0.467 Sum_probs=177.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. .++++|+||+|++| ++||+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+|++++|
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 478999999953 36999999999999 99999999999999999999999999999999999998776 778899999
Q ss_pred EccCCCCCcc-cHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|.+ |+++|+... ...+ ++++.++++.+++.+.... ...+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHHH
Confidence 9999998876 999998531 1111 3457888999888765332 2357999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
+++|++|+|||||++||..+.+.+.+.|++..++.|+|+|||+++.+.+ |||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999986667999999999999976 8999999999998865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=367.32 Aligned_cols=220 Identities=24% Similarity=0.383 Sum_probs=187.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc--C---CccEEEECCeeCCCC--ChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE--P---AGGKILVDGIDISKL--GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e--p---~~G~I~IDG~dI~~i--~l~ 1057 (1232)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+.+ | ++|+|.+||.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999963 469999999999999999999999999999999999954 6 499999999999653 345
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|..|+++|+... +.. .++++.++++.+++.+.+.. .....+.+||+||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHHH
Confidence 678899999999999999999998621 111 23456778888887654322 223456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|++|||||||++||.++...+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999986567899999999999876 9999999999999999999998
Q ss_pred hhcCC
Q 000904 1209 KREGS 1213 (1232)
Q Consensus 1209 ~~~~~ 1213 (1232)
+++..
T Consensus 236 ~~~~~ 240 (252)
T PRK14239 236 MNPKH 240 (252)
T ss_pred hCCCC
Confidence 76543
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=378.21 Aligned_cols=213 Identities=27% Similarity=0.424 Sum_probs=185.4
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
..|+++|++++|+. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|+...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 35999999999963 46999999999999999999999999999999999999999999999999997755 4578999
Q ss_pred EEEccCCCCCc-ccHHhccCCCCC---CCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPLSQ---HTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~~~---~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
||+||+|.+|. .|+++|+..+.. .++ +++.++++.+++.+.. ++.+ .+||+|||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-------DAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-------cCch----hhCCHHHHHHHHHHH
Confidence 99999999885 699999964221 222 3456778888776432 2222 479999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||+.+|++|+|||||++||+.+.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++++.|+|+++.++
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999854 37899999999999977 999999999999999999999764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=366.40 Aligned_cols=211 Identities=24% Similarity=0.337 Sum_probs=184.6
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i~ 1064 (1232)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |.+++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 789999999963 469999999999999999999999999999999999999999999999999988776654 45799
Q ss_pred EEccCCCCCcc-cHHhccCCCCC------------C---CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPLSQ------------H---TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~~~------------~---sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
|+||+|.+|.+ |+++|+..... . .++++.++++..++.+.. .....+||||||
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Ge~ 149 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-----------DRLAGLLSHGQK 149 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHH
Confidence 99999999986 99999964211 0 234567777777765432 234468999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
||++||||++++|++|+|||||++||+++.+.+.+.|++..+++|+|++||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 9999999999999999999999999999999999999986567899999999999987 999999999999999999998
Q ss_pred Hh
Q 000904 1208 MK 1209 (1232)
Q Consensus 1208 l~ 1209 (1232)
+.
T Consensus 230 ~~ 231 (242)
T TIGR03411 230 QA 231 (242)
T ss_pred hc
Confidence 75
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=366.66 Aligned_cols=222 Identities=25% Similarity=0.431 Sum_probs=189.6
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CCh
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISK--LGL 1056 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l 1056 (1232)
|.++++|++++|+. .++++|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.+ .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 56899999999963 3699999999999999999999999999999999999863 69999999999875 455
Q ss_pred HhhhccEEEEccCCCCCcccHHhccCCCC---C-C----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1057 HDLRSRFGIIPQDPTLFNGTVRYNLDPLS---Q-H----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1057 ~~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~-~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
..+|++++|+||+|.+|..|+++|+.... . . .++++.++++.+++.+.+.. .....+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHHH
Confidence 67889999999999999999999996311 1 1 23456777888877543322 22334568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
||++|||||+++|++|+|||||++||..+...+.+.|++..++.|||+|||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999986567899999999998877 999999999999999999999
Q ss_pred HhhcCCH
Q 000904 1208 MKREGSL 1214 (1232)
Q Consensus 1208 l~~~~~~ 1214 (1232)
..++...
T Consensus 233 ~~~~~~~ 239 (250)
T PRK14240 233 FTNPKDK 239 (250)
T ss_pred HhCCCCh
Confidence 8765433
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=372.64 Aligned_cols=215 Identities=22% Similarity=0.361 Sum_probs=188.9
Q ss_pred eEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 985 KVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
-++++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+..++|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999642 24599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCC--CCCcccHHhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDP--TLFNGTVRYNLDPLS---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP--~LF~gTIr~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
+|+||+| .++..|+.+|+.... ..++ +++.++++.+++.+.... .+..||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 477889999996321 2233 345678888888665433 2357999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|||+++|+||||||||++||..+.+.+.+.|++..+ ++|+|+||||++.+..||+|++|++|++++.|++++++.+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999987543 7899999999999988999999999999999999999864
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=366.30 Aligned_cols=223 Identities=25% Similarity=0.397 Sum_probs=190.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCC--ChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKL--GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1057 (1232)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 4699999999999999999999999999999999999984 899999999998753 345
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|..|+++|+... +.. .++++.++++..++.+.+.. .....+.+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHHH
Confidence 678899999999999999999999631 111 23446778888888654322 223456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++++|+||+|||||++||..+...+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999986667899999999998876 9999999999999999999998
Q ss_pred hhcCCHHH
Q 000904 1209 KREGSLFG 1216 (1232)
Q Consensus 1209 ~~~~~~f~ 1216 (1232)
+++...|.
T Consensus 234 ~~~~~~~~ 241 (250)
T PRK14262 234 ERPKNKLT 241 (250)
T ss_pred hCCCChHH
Confidence 76544444
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=369.42 Aligned_cols=220 Identities=24% Similarity=0.439 Sum_probs=188.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.++++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5899999999963 469999999999999999999999999999999999875 789999999999965 3445
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|.+|+++|+... +.. .++.+.++++.+++.+.+.. .....+.+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD-------RLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHH-------HHhcCcccCCHHHHH
Confidence 678899999999999999999998631 111 13456778888877533221 123345789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|++|||||||++||..+.+.+.+.|++..+++|||++||+++.+.+ ||+|++|++|++++.|++++++
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987567899999999998876 9999999999999999999998
Q ss_pred hhcCC
Q 000904 1209 KREGS 1213 (1232)
Q Consensus 1209 ~~~~~ 1213 (1232)
+++..
T Consensus 252 ~~~~~ 256 (268)
T PRK14248 252 TSPKQ 256 (268)
T ss_pred hCCCC
Confidence 76443
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=360.72 Aligned_cols=203 Identities=30% Similarity=0.441 Sum_probs=174.4
Q ss_pred EEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh---hh
Q 000904 986 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD---LR 1060 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR 1060 (1232)
++++|++++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.|+.+++..+ +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996422 46999999999999999999999999999999999999999999999999998877654 34
Q ss_pred -ccEEEEccCCCCCc-ccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1061 -SRFGIIPQDPTLFN-GTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1061 -~~i~iVpQdP~LF~-gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
++++|+||+|.+|. .|+++|+... .... ++++.++++.+++.+.... .+..||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH-----------RPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHH
Confidence 67999999999885 5999998631 1121 3356778888777654333 3357999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEE
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLA 1199 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vv 1199 (1232)
+||||++++|+||+|||||++||.++.+.+.+.|++.. .++|+|+||||++.+..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998753 378999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=371.46 Aligned_cols=213 Identities=26% Similarity=0.412 Sum_probs=185.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC-hHhhhccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG-LHDLRSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~LR~~i~ 1064 (1232)
++++|++++|+++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...++++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 6899999999533 45999999999999999999999999999999999999999999999999998765 467788999
Q ss_pred EEccCCC--CCcccHHhccCCCCC---CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1065 IIPQDPT--LFNGTVRYNLDPLSQ---HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1065 iVpQdP~--LF~gTIr~NLdp~~~---~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
|+||+|. ++..|+++|+..... .+ ++++.++++.+++.+.... .+..||+|||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHHH
Confidence 9999985 667899999963211 12 3456777888887655433 34579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||+++|+||+|||||++||+.+...+.+.|++.. ++.|||++||+++.+..||+|++|++|++++.|++++++.+
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998753 47899999999999988999999999999999999998764
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=364.85 Aligned_cols=212 Identities=29% Similarity=0.453 Sum_probs=181.6
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i~ 1064 (1232)
++++|++++|+. +.+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 468999999953 469999999999999999999999999999999999999999999999999988776554 56799
Q ss_pred EEccCCCCCcc-cHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|+||+|.+|.+ |+++|+... .... ++++.++++..++.+.. .....+||+|||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLR-----------KSKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHHHHH
Confidence 99999999987 999998632 1112 23455667666664432 33446899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
++.+|++|+|||||++||.++.+.+.+.|++.. .++|+|++||+++.+.+ ||+|++|++|++++.|+++++...
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 223 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhcC
Confidence 999999999999999999999999999998753 47899999999988877 999999999999999999998653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=373.29 Aligned_cols=216 Identities=27% Similarity=0.392 Sum_probs=183.6
Q ss_pred eEEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC----ChH
Q 000904 985 KVDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL----GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~ 1057 (1232)
.|+++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996422 3699999999999999999999999999999999999999999999999998653 345
Q ss_pred hhhccEEEEccCC--CCCcccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1058 DLRSRFGIIPQDP--TLFNGTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP--~LF~gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
..|++++|+||+| .+|..|+++|+... ...+ ++.+.++++.+++.+... .....+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI----------SKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh----------hCCcccCCHHHH
Confidence 6788999999998 57888999999521 1122 234677788887752221 223458999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
||++|||||+++|++|||||||++||..+...+.+.|++.. .+.|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998753 47899999999999876 99999999999999999999
Q ss_pred HHhh
Q 000904 1207 LMKR 1210 (1232)
Q Consensus 1207 Ll~~ 1210 (1232)
++++
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 8754
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=366.43 Aligned_cols=214 Identities=27% Similarity=0.378 Sum_probs=183.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC--------hH
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG--------LH 1057 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~--------l~ 1057 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..
T Consensus 4 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 4 IEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 789999999963 36999999999999999999999999999999999999999999999999987542 34
Q ss_pred hhhccEEEEccCCCCCc-ccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1058 DLRSRFGIIPQDPTLFN-GTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~-gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
.+|++++|+||+|.+|. .|+++|+... .... ++++.++++..++.+.. ...+.+||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~Gq~ 150 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-----------TSYPRRLSGGQQ 150 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----------hCChhhCChHHH
Confidence 67889999999998885 6999998531 1112 23466777777765432 234568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
||++|||||+.+|++|||||||++||..+.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|++++.|++++
T Consensus 151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 230 (250)
T PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKA 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998754 37899999999999977 99999999999999999999
Q ss_pred HHhhcC
Q 000904 1207 LMKREG 1212 (1232)
Q Consensus 1207 Ll~~~~ 1212 (1232)
+++.+.
T Consensus 231 ~~~~~~ 236 (250)
T PRK11264 231 LFADPQ 236 (250)
T ss_pred HhcCCC
Confidence 987543
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=373.03 Aligned_cols=215 Identities=25% Similarity=0.370 Sum_probs=183.3
Q ss_pred EEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC----ChHh
Q 000904 986 VDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL----GLHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~~ 1058 (1232)
++++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996422 3699999999999999999999999999999999999999999999999999764 3567
Q ss_pred hhccEEEEccCC--CCCcccHHhccCCCC---CCCHH----HHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1059 LRSRFGIIPQDP--TLFNGTVRYNLDPLS---QHTDQ----EIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1059 LR~~i~iVpQdP--~LF~gTIr~NLdp~~---~~sd~----eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
+|++++|+||+| .+|..|+++|+.... ..+++ .+.++++.+++.+.. ......+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL----------FEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHHH
Confidence 888999999998 688899999996311 12232 345667777775321 12334689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
|++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998753 37899999999999976 899999999999999999998
Q ss_pred Hhh
Q 000904 1208 MKR 1210 (1232)
Q Consensus 1208 l~~ 1210 (1232)
+++
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=370.43 Aligned_cols=213 Identities=25% Similarity=0.362 Sum_probs=187.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+.+.+..++|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 4899999999953 46999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCCCcc-cHHhccCCCC-----------CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPLS-----------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~~-----------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
|+||++.++.+ |+++|+.... ...++++.++++.+++.+..... ..+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCCHHHHHHHH
Confidence 99999877654 9999986311 01245688899999886654433 2479999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||+.+|+||||||||++||..+.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999998753 37899999999999976 99999999999999999999865
Q ss_pred h
Q 000904 1210 R 1210 (1232)
Q Consensus 1210 ~ 1210 (1232)
.
T Consensus 238 ~ 238 (265)
T PRK10575 238 G 238 (265)
T ss_pred H
Confidence 3
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=367.61 Aligned_cols=221 Identities=23% Similarity=0.377 Sum_probs=189.5
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CCh
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISK--LGL 1056 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l 1056 (1232)
+.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++| ++|+|.+||+++.. ...
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 36999999999963 4699999999999999999999999999999999999985 48999999999864 445
Q ss_pred HhhhccEEEEccCCCCCcccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1057 HDLRSRFGIIPQDPTLFNGTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1057 ~~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
..+|.+++|+||+|.+|..|+++|+... +... ++.+.++++.+++.+.+... ....+.+||+|||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK-------LNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHHH
Confidence 6778899999999999999999999631 1112 23466888888886544322 2345678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEe-----CCEEEEec
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAIS-----DGKLAEYD 1202 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~-----~G~vvE~g 1202 (1232)
||++|||||+++|++|+|||||++||..+...+.+.|++..+++|||+|||+++.+.+ ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999986667899999999999987 89999997 59999999
Q ss_pred ChhHHHhhcCC
Q 000904 1203 EPMKLMKREGS 1213 (1232)
Q Consensus 1203 ~p~~Ll~~~~~ 1213 (1232)
+|+++++++..
T Consensus 237 ~~~~~~~~~~~ 247 (259)
T PRK14260 237 VTTQIFSNPLD 247 (259)
T ss_pred CHHHHhcCCCC
Confidence 99999876543
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=365.87 Aligned_cols=222 Identities=20% Similarity=0.378 Sum_probs=192.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.++++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+.+ |++|+|.+||.+++. .+..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999963 469999999999999999999999999999999999975 389999999999875 3466
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
++|++++|+||+|.+|.+|+++|+... +..+ ++++.++++.+++.+.+... ....+.+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHHH
Confidence 789999999999999999999999632 1112 24467788999987665432 23456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|+||+|||||++||..+...+.+.|++..+++|+|++||+++.+.+ ||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987668899999999999988 8899999999999999999998
Q ss_pred hhcCCHH
Q 000904 1209 KREGSLF 1215 (1232)
Q Consensus 1209 ~~~~~~f 1215 (1232)
.++...+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14266 234 INPKDKR 240 (250)
T ss_pred hCCCChH
Confidence 7766554
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=364.95 Aligned_cols=212 Identities=22% Similarity=0.320 Sum_probs=181.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCC------CCChHhh
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS------KLGLHDL 1059 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~------~i~l~~L 1059 (1232)
++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ......+
T Consensus 3 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 789999999953 46999999999999999999999999999999999999999999999999874 1234567
Q ss_pred hccEEEEccCCCCCcc-cHHhccCC--CC--CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1060 RSRFGIIPQDPTLFNG-TVRYNLDP--LS--QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1060 R~~i~iVpQdP~LF~g-TIr~NLdp--~~--~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
|++++|+||+|.+|.+ |+++|+.. .. ... .+++.++++..++.+.... ...+||||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qr 149 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADR-----------FPLHLSGGQQQR 149 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHH
Confidence 8899999999999865 99999852 11 111 2345667777777554433 335899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
++||||++++|++|||||||++||.++...+.+.|++.. .+.|+|++||+++.+.+ ||++++|++|++++.|+++++.
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 999999999999999999999999999999999998754 37899999999999976 9999999999999999999876
Q ss_pred hh
Q 000904 1209 KR 1210 (1232)
Q Consensus 1209 ~~ 1210 (1232)
+.
T Consensus 230 ~~ 231 (242)
T PRK11124 230 QP 231 (242)
T ss_pred Cc
Confidence 43
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=369.59 Aligned_cols=219 Identities=21% Similarity=0.406 Sum_probs=188.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 39 ~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~ 116 (285)
T PRK14254 39 VIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116 (285)
T ss_pred eEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchH
Confidence 5899999999963 469999999999999999999999999999999999997 689999999999865 3456
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----C--CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----S--QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~--~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
.+|++++|+||+|.+|.+|+++|+... + ...+++++++++.+++.+.+... ....+.+||||||||+
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LSgGe~qrv 189 (285)
T PRK14254 117 ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ-------LDSSGLDLSGGQQQRL 189 (285)
T ss_pred hhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHH-------HhCCcccCCHHHHHHH
Confidence 778899999999999988999998631 1 11245688889888886443221 2334568999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEE-EEeCCEEEEecChhHHHh
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVL-AISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVl-VL~~G~vvE~g~p~~Ll~ 1209 (1232)
+|||||+++|+||||||||++||.++.+.+.+.|++..++.|||+|||+++.+.. |||++ +|++|++++.|+++++++
T Consensus 190 ~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~ 269 (285)
T PRK14254 190 CIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFE 269 (285)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999987667899999999999987 99975 579999999999999987
Q ss_pred hcC
Q 000904 1210 REG 1212 (1232)
Q Consensus 1210 ~~~ 1212 (1232)
++.
T Consensus 270 ~~~ 272 (285)
T PRK14254 270 NPE 272 (285)
T ss_pred CcC
Confidence 544
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=370.96 Aligned_cols=215 Identities=22% Similarity=0.393 Sum_probs=187.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+...+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 48999999999754346999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCCC--CCcccHHhccCCCC---CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1065 IIPQDPT--LFNGTVRYNLDPLS---QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1065 iVpQdP~--LF~gTIr~NLdp~~---~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
|+||+|. ++..|+++|+.... .. .++++.++++.+++.+.... .+.+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHH
Confidence 9999994 44668899885311 11 23456778888887654332 34589999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|++++|++|||||||++||..+.+.+.+.|++.. .++|+|++||+++.+..||||++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999998753 27899999999999988999999999999999999998764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=364.92 Aligned_cols=219 Identities=21% Similarity=0.370 Sum_probs=188.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCC--ChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKL--GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1057 (1232)
.++++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 4899999999963 4699999999999999999999999999999999999985 799999999999653 345
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCC---CC-C----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLS---QH-T----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~~-s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|..|+++|+.... .. + ++++.++++.+++.+.+... ....+.+||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD-------LKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH-------hhCCcccCCHHHHH
Confidence 6788999999999999999999996311 11 1 24567888888886443321 23356689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++++|+||+|||||++||..+...+.+.|++..++.|+|+|||+++.+.. ||||++|++|++++.|++++++
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999986667899999999999887 9999999999999999999998
Q ss_pred hhcC
Q 000904 1209 KREG 1212 (1232)
Q Consensus 1209 ~~~~ 1212 (1232)
..+.
T Consensus 235 ~~~~ 238 (251)
T PRK14270 235 LEPQ 238 (251)
T ss_pred cCCC
Confidence 7543
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=371.76 Aligned_cols=215 Identities=25% Similarity=0.384 Sum_probs=188.1
Q ss_pred eEEEEeeEeEecCC----CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC-hHhh
Q 000904 985 KVDICDLQIRYRPD----SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG-LHDL 1059 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~----~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~L 1059 (1232)
-++++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ..++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999642 246999999999999999999999999999999999999999999999999997654 4667
Q ss_pred hccEEEEccCCC--CCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1060 RSRFGIIPQDPT--LFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1060 R~~i~iVpQdP~--LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
|++++|+||+|. +|..|+.+|+.... ..+ ++++.++++.+++.+...+.| .+||+|||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999994 67778999985321 112 456788899999877655543 4799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
++|||||+++|++|||||||++||..+...+.+.|++.. .++|||+||||++.+..||++++|++|++++.|+|+++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998753 378999999999999889999999999999999999997
Q ss_pred hh
Q 000904 1209 KR 1210 (1232)
Q Consensus 1209 ~~ 1210 (1232)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=367.96 Aligned_cols=212 Identities=23% Similarity=0.387 Sum_probs=186.9
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++...+..++++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EccCCCCCcc-cHHhccCCC--------CC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPL--------SQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCL 1133 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~--------~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~L 1133 (1232)
+||++.++.+ |+++|++.. +. ..++++.++++.+++.+.... .+..||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHHH
Confidence 9999998876 999999742 11 123457788888888654333 345799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1134 GRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1134 ARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|||++++|++|||||||++||.++.+.+.+.|++.. .++|+|++||+++.+.+ ||+|++|++|++++.|+++++..+
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 999999999999999999999999999999998753 47899999999999876 999999999999999999998753
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=364.05 Aligned_cols=219 Identities=25% Similarity=0.400 Sum_probs=188.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC-----ccEEEECCeeCCCC--ChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA-----GGKILVDGIDISKL--GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~~i--~l~ 1057 (1232)
.++++|++++|.. +++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999963 46999999999999999999999999999999999999997 69999999998653 456
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCC---C-CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLS---Q-HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~-~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|..|+++|+.... . .. ++.+.++++.+++.+.+.. .....+.+||+||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHHH
Confidence 7789999999999999999999996321 1 11 2345667777777654332 234567789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|++|||||||++||..+...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999876557899999999999988 7999999999999999999998
Q ss_pred hhcC
Q 000904 1209 KREG 1212 (1232)
Q Consensus 1209 ~~~~ 1212 (1232)
.++.
T Consensus 235 ~~~~ 238 (251)
T PRK14249 235 SRPR 238 (251)
T ss_pred hCCC
Confidence 7644
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=363.24 Aligned_cols=213 Identities=26% Similarity=0.401 Sum_probs=183.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC--ChHhhhccE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL--GLHDLRSRF 1063 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i--~l~~LR~~i 1063 (1232)
++++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 679999999963 4699999999999999999999999999999999999999999999999999864 345678899
Q ss_pred EEEccCCCCCc-ccHHhccCCCC----CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPLS----QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~~----~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
+|+||+|.+|. .|+++|+.... ..+ ++++.++++..++.+.... .+..||+|||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHHH
Confidence 99999998885 69999996311 111 2345677777776544333 3458999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
||++++|++|+|||||++||.++...+.+.|++.. .+.|+|+|||+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 99999999999999999999999999999998753 47899999999999976 9999999999999999999988654
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=359.57 Aligned_cols=200 Identities=31% Similarity=0.443 Sum_probs=173.3
Q ss_pred EEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEE
Q 000904 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGII 1066 (1232)
Q Consensus 987 ~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iV 1066 (1232)
+++|++++|+.+..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36799999964324699999999999999999999999999999999999999999999999999888888889999999
Q ss_pred ccCCC--CCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1067 PQDPT--LFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1067 pQdP~--LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
||+|. ++..|+++|+.... ..+ ++++.++++..++.+...+ ...+||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-----------SPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 99983 67889999986321 112 3356678888877654433 3458999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
+++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999998754 37899999999999988 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=359.43 Aligned_cols=201 Identities=26% Similarity=0.370 Sum_probs=174.0
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh---Hhhhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL---HDLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR~~ 1062 (1232)
++++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999633 469999999999999999999999999999999999999999999999999987654 356889
Q ss_pred EEEEccCCCCCc-ccHHhccCCCC---CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1063 FGIIPQDPTLFN-GTVRYNLDPLS---QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1063 i~iVpQdP~LF~-gTIr~NLdp~~---~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
++|+||+|.+|. .|+++|+.... .. .++++.++++.+++.+..... ..+||+|||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHHH
Confidence 999999999887 49999986321 11 234577888888886554333 347999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEE
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKL 1198 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~v 1198 (1232)
|||+++|++|+|||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998753 47899999999999987 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=365.80 Aligned_cols=220 Identities=23% Similarity=0.388 Sum_probs=187.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 24 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 24 VFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred EEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 5999999999963 359999999999999999999999999999999999997 699999999999853 4556
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC---CCCC-----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL---SQHT-----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~---~~~s-----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|..|+++|+... ...+ ++.+.++++..++.+.+. ......+.+|||||||
T Consensus 102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQQQ 174 (271)
T ss_pred HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHHHH
Confidence 788899999999999989999999621 1221 223456666666543222 2234456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|+||||||||++||..+...+.+.|++..+++|+|+||||++.+.+ ||++++|++|++++.|+++++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999876 9999999999999999999998
Q ss_pred hhcCC
Q 000904 1209 KREGS 1213 (1232)
Q Consensus 1209 ~~~~~ 1213 (1232)
.++..
T Consensus 255 ~~~~~ 259 (271)
T PRK14238 255 SNPSD 259 (271)
T ss_pred cCCCC
Confidence 76543
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=359.04 Aligned_cols=202 Identities=23% Similarity=0.385 Sum_probs=174.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999999766543 468999
Q ss_pred EccCCCCCc-ccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFN-GTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|. .|+++|+... .... ++++.++++.+++.+..... ..+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRK-----------PKQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999999885 6999998632 1112 33567778888876554433 357999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
+++|++|+|||||++||+++.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|+++++|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999998753 37899999999999887 8999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=360.67 Aligned_cols=203 Identities=27% Similarity=0.330 Sum_probs=175.3
Q ss_pred EEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 986 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
++++|++++|+... +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999996321 469999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEccCCCCCc-ccHHhccCCCC---C----CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPLS---Q----HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~~---~----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
+|+||+|.+|. .|+++|+.... . ..++++.++++.+++.+...+.+ .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999887 69999986311 1 12356788888888876554433 479999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEe--CCEEEEecCh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAIS--DGKLAEYDEP 1204 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~--~G~vvE~g~p 1204 (1232)
||+++|++|||||||++||+.+.+.+.+.|++.. .+.|||+|||+++.+.+ ||+|++|+ +|+++|.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998753 37899999999998876 99999999 7999987753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=359.85 Aligned_cols=200 Identities=24% Similarity=0.364 Sum_probs=174.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH---hhhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH---DLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR~~ 1062 (1232)
++++|++++|+. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+.+++.. .+|++
T Consensus 2 l~~~~l~~~~~~-~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPG-GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCC-CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 689999999952 24699999999999999999999999999999999999999999999999999887643 46789
Q ss_pred EEEEccCCCCCc-ccHHhccCCC----C---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1063 FGIIPQDPTLFN-GTVRYNLDPL----S---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1063 i~iVpQdP~LF~-gTIr~NLdp~----~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
++|+||+|.+|. .|+++|+... + ...+++++++++..++.+.....+ .+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999885 6999998632 1 112456888999998876544433 47999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
|||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999998753 47899999999999987 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=367.51 Aligned_cols=221 Identities=24% Similarity=0.370 Sum_probs=191.0
Q ss_pred cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CC
Q 000904 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISK--LG 1055 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~ 1055 (1232)
.+.++++|++++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.|+.. .+
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 356999999999953 4699999999999999999999999999999999999984 89999999999975 34
Q ss_pred hHhhhccEEEEccCCCCCcccHHhccCCC---CC-CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhH
Q 000904 1056 LHDLRSRFGIIPQDPTLFNGTVRYNLDPL---SQ-HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1056 l~~LR~~i~iVpQdP~LF~gTIr~NLdp~---~~-~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
...+|++++|+||++.+|.+|+++|+... .. .. ++++.++++.+++.+.+.. .....+.+||+||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHHH
Confidence 56788999999999999999999999631 11 11 3457788888888754432 2234567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
|||++|||||+++|+||||||||++||..+...+.+.|++..++.|+|++||+++.+.+ ||+|++|++|++++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999876 99999999999999999999
Q ss_pred HHhhcC
Q 000904 1207 LMKREG 1212 (1232)
Q Consensus 1207 Ll~~~~ 1212 (1232)
+.+++.
T Consensus 254 ~~~~~~ 259 (272)
T PRK14236 254 LFTSPA 259 (272)
T ss_pred HhcCCC
Confidence 986543
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=376.74 Aligned_cols=226 Identities=24% Similarity=0.366 Sum_probs=187.8
Q ss_pred eEEEEeeEeEecC--CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC---ccEEEECCeeCCCCChHhh
Q 000904 985 KVDICDLQIRYRP--DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA---GGKILVDGIDISKLGLHDL 1059 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~--~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i~l~~L 1059 (1232)
.++++|++++|+. +...+++||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.|+.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5899999999953 2246999999999999999999999999999999999999996 9999999999999887765
Q ss_pred h----ccEEEEccCCC--CCc-ccHHhccC----CCCCCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1060 R----SRFGIIPQDPT--LFN-GTVRYNLD----PLSQHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1060 R----~~i~iVpQdP~--LF~-gTIr~NLd----p~~~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
| ++|+||||||. ++. -|+.+|+. .....+. +++.++|+.+++.+. . ..+...+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~-------~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEA-------R-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCh-------H-HHhcCCcccCC
Confidence 3 47999999993 443 46666652 2222222 346677888777431 1 11334567899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~ 1201 (1232)
||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+||||++.+.. ||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999887533 7899999999999976 999999999999999
Q ss_pred cChhHHHhhcCCHHHHH
Q 000904 1202 DEPMKLMKREGSLFGQL 1218 (1232)
Q Consensus 1202 g~p~~Ll~~~~~~f~~l 1218 (1232)
|+++++++++...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 99999998876666553
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=362.51 Aligned_cols=213 Identities=23% Similarity=0.348 Sum_probs=180.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh-hhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD-LRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i 1063 (1232)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..+ .|+++
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998887654 57889
Q ss_pred EEEccCCCCCcc-cHHhccCCCCC-CC----HHHHHHHHHHc-CCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLSQ-HT----DQEIWEVLAKC-HLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~~-~s----d~eI~~aL~~~-~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
+|+||++.+|.+ |+++|+..... .+ ++++.++++.. ++.+ .......+||+|||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHHHH
Confidence 999999999975 99999963211 11 22344444443 2222 1223456899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
++++|+||+|||||++||.++.+.+.+.|++.. +++|+|++||+++.+.+ ||++++|++|++++.|+++++.++
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999998743 47899999999998776 999999999999999999999754
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=365.62 Aligned_cols=220 Identities=21% Similarity=0.380 Sum_probs=189.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 4899999999963 369999999999999999999999999999999999986 479999999999853 4556
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCC---CC---CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLS---QH---TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~~---sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
++|++++|+||+|.+|..|+++|+.... .. .++++.++++.+++.+.+... ....+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK-------LKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH-------hcCCcccCCHHHHHHH
Confidence 7788999999999999889999996321 11 234566778888886554321 2345678999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEe---------CCEEEEe
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAIS---------DGKLAEY 1201 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~---------~G~vvE~ 1201 (1232)
+|||||+++|+||||||||++||.++.+.+.+.|++..+++|||+|||+++.+.+ ||+|++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999986667899999999999877 89999998 8999999
Q ss_pred cChhHHHhhcCC
Q 000904 1202 DEPMKLMKREGS 1213 (1232)
Q Consensus 1202 g~p~~Ll~~~~~ 1213 (1232)
|+++++++++..
T Consensus 241 ~~~~~~~~~~~~ 252 (264)
T PRK14243 241 DRTEKIFNSPQQ 252 (264)
T ss_pred CCHHHHHhCCCc
Confidence 999999876543
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=383.41 Aligned_cols=204 Identities=26% Similarity=0.379 Sum_probs=178.5
Q ss_pred ccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh----hccEEEEccCCCCCc-c
Q 000904 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL----RSRFGIIPQDPTLFN-G 1075 (1232)
Q Consensus 1001 ~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L----R~~i~iVpQdP~LF~-g 1075 (1232)
.+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+.+.+..++ |++++|+||++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 48999999999999999999999999999999999999999999999999998876554 358999999999986 5
Q ss_pred cHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000904 1076 TVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDE 1148 (1232)
Q Consensus 1076 TIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDE 1148 (1232)
|+++|+... ...+ ++++.++|+.++|.+...+.| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999632 1112 356778899998876655443 4799999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHH
Q 000904 1149 ATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1149 aTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f 1215 (1232)
||++||+.+.+.+++.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+|+++++++...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999998753 47899999999999876 99999999999999999999988765433
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=382.05 Aligned_cols=217 Identities=24% Similarity=0.401 Sum_probs=189.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++..++. .|++++
T Consensus 19 ~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 94 (377)
T PRK11607 19 LLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPIN 94 (377)
T ss_pred eEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 5999999999953 469999999999999999999999999999999999999999999999999987664 467899
Q ss_pred EEccCCCCCcc-cHHhccCCC-C--CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPL-S--QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|+||++.+|.. |+++|+... . ..+ ++++.++++.+++.+...+.| .+||||||||++||||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLARA 163 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALARS 163 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 999999631 1 122 345678888888876554443 4799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCC
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGS 1213 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~ 1213 (1232)
|+++|++|+|||||++||..+.+.+.+.|++.. .+.|+|+||||++.+.. ||+|++|++|++++.|+|+++++++..
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~ 243 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTT 243 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCcc
Confidence 999999999999999999999999987776543 37899999999999876 999999999999999999999988776
Q ss_pred HHH
Q 000904 1214 LFG 1216 (1232)
Q Consensus 1214 ~f~ 1216 (1232)
.|-
T Consensus 244 ~~~ 246 (377)
T PRK11607 244 RYS 246 (377)
T ss_pred HHH
Confidence 553
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=364.53 Aligned_cols=212 Identities=25% Similarity=0.363 Sum_probs=186.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++++.+...++++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EccCCCC-CcccHHhccCCCCC-------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTL-FNGTVRYNLDPLSQ-------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~L-F~gTIr~NLdp~~~-------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+ +..|+++|+..... ..++++.++++.+++.+.... ...+||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 9999987 67899999863211 123457788888888654333 2458999999999999999
Q ss_pred c------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1138 L------RRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1138 L------~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
+ .+|++|+|||||++||..+.+.+.+.|++.. .+.|||+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999998753 47899999999999976 9999999999999999999987
Q ss_pred hh
Q 000904 1209 KR 1210 (1232)
Q Consensus 1209 ~~ 1210 (1232)
++
T Consensus 230 ~~ 231 (258)
T PRK13548 230 TP 231 (258)
T ss_pred Ch
Confidence 64
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=356.77 Aligned_cols=210 Identities=24% Similarity=0.324 Sum_probs=185.6
Q ss_pred EEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh----Hhhhcc
Q 000904 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL----HDLRSR 1062 (1232)
Q Consensus 987 ~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l----~~LR~~ 1062 (1232)
.+.|+.++|+++ .++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 467899999755 569999999999999999999999999999999999999999999999998876542 345678
Q ss_pred EEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000904 1063 FGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1063 i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
++|+||+|.+|+.|+++|+......++++.+++++.+++.+.+...|.|+++.+.....+||+|||||++||||++++|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998644456677788999999998888889999998888899999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHH--HHHHhc-CCcEEEEEecChhhhhhcCeEEEEeCCE
Q 000904 1143 ILVLDEATASIDNATDMILQK--TIRAEF-ADCTVITVAHRIPTVMDCTMVLAISDGK 1197 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~--~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~~G~ 1197 (1232)
+|||||||++||..+.+.+.+ .++... .+.|+|++||+++.+..||++++|++|.
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999998877766 444322 3689999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=367.95 Aligned_cols=214 Identities=22% Similarity=0.349 Sum_probs=188.3
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
-.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 35999999999963 4699999999999999999999999999999999999999999999999999988888888899
Q ss_pred EEEccCCCCCc-ccHHhccCCCC--------C---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPLS--------Q---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~~--------~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
+|+||+|.+|. .|+++|+.... . ..+++++++++.+++.+...+ .+.+||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHHH
Confidence 99999998774 69999986421 0 123467888888888654332 3468999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
+||||++++|++|+|||||++||.++.+.+.+.|++.. .+.|||++||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998753 27899999999998877 9999999999999999999987
Q ss_pred hh
Q 000904 1209 KR 1210 (1232)
Q Consensus 1209 ~~ 1210 (1232)
..
T Consensus 233 ~~ 234 (265)
T PRK10253 233 TA 234 (265)
T ss_pred hH
Confidence 53
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=371.83 Aligned_cols=218 Identities=22% Similarity=0.330 Sum_probs=183.0
Q ss_pred cceEEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC----C-
Q 000904 983 VGKVDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK----L- 1054 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~----i- 1054 (1232)
.|.|+++|++++|+... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 36799999999996432 259999999999999999999999999999999999999999999999999853 2
Q ss_pred ChHhhhccEEEEccCC--CCCcccHHhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCCh
Q 000904 1055 GLHDLRSRFGIIPQDP--TLFNGTVRYNLDPLS---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSM 1125 (1232)
Q Consensus 1055 ~l~~LR~~i~iVpQdP--~LF~gTIr~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSg 1125 (1232)
+...+|++++|+||+| .+|..|+++|+.... .... +++.++++.+++.+. .....+.+|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~----------~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPED----------YVKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhcCChhhCCH
Confidence 3567788999999998 477889999996311 1222 234556666666321 12234568999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1126 GQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1126 GQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
|||||++|||||+++|++|||||||++||..+.+.+.+.|++.. .++|||+||||++.+.. ||+|++|++|++++.|
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999998754 37899999999998876 9999999999999999
Q ss_pred ChhHHHhh
Q 000904 1203 EPMKLMKR 1210 (1232)
Q Consensus 1203 ~p~~Ll~~ 1210 (1232)
++++++++
T Consensus 234 ~~~~~~~~ 241 (289)
T PRK13645 234 SPFEIFSN 241 (289)
T ss_pred CHHHHhcC
Confidence 99998754
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=354.53 Aligned_cols=215 Identities=25% Similarity=0.387 Sum_probs=189.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCe---eCCCCChHhhhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI---DISKLGLHDLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~---dI~~i~l~~LR~~ 1062 (1232)
|+++|++..|+. -.+++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.++|. |.+++..+ .++
T Consensus 3 i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~R~ 78 (345)
T COG1118 3 IRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--DRK 78 (345)
T ss_pred eeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--hcc
Confidence 778888888853 45899999999999999999999999999999999999999999999999 88774443 478
Q ss_pred EEEEccCCCCCc-ccHHhccCCCC---------CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1063 FGIIPQDPTLFN-GTVRYNLDPLS---------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1063 i~iVpQdP~LF~-gTIr~NLdp~~---------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
||+|+||+-||. .||.+|+...- ...+.++.+.|+.++|.+.-+..| .+||||||||+|
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHH
Confidence 999999999884 59999997321 123456778899999987766655 479999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||...|++|+||||.++||..-.+.+++-|++.. -++|+++||||.+.+.+ ||||+||++|+|...|+|+|...
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 9999999999999999999999999999999988743 37899999999999887 99999999999999999999999
Q ss_pred hcCCHH
Q 000904 1210 REGSLF 1215 (1232)
Q Consensus 1210 ~~~~~f 1215 (1232)
.+++.|
T Consensus 228 ~P~s~f 233 (345)
T COG1118 228 HPASRF 233 (345)
T ss_pred CCCccc
Confidence 998877
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=366.03 Aligned_cols=222 Identities=21% Similarity=0.334 Sum_probs=191.3
Q ss_pred CCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCC---
Q 000904 981 PVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDIS--- 1052 (1232)
Q Consensus 981 p~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~--- 1052 (1232)
|..+.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 45678999999999963 3699999999999999999999999999999999999985 7999999998874
Q ss_pred -CCChHhhhccEEEEccCCCCCcccHHhccCCC----C----CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCC
Q 000904 1053 -KLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPL----S----QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNW 1123 (1232)
Q Consensus 1053 -~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~----~----~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nL 1123 (1232)
....+.+|++++|+||+|.+|.+|+++|+... + ...++++.++++.+++.+.+. ........+|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccC
Confidence 33456778899999999999999999999632 1 112466788888888764332 2233446789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1124 SMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1124 SgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
|+|||||++|||||+++|++|+|||||++||..+.+.+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987667899999999999976 9999999999999999
Q ss_pred ChhHHHhhc
Q 000904 1203 EPMKLMKRE 1211 (1232)
Q Consensus 1203 ~p~~Ll~~~ 1211 (1232)
+++++..++
T Consensus 243 ~~~~~~~~~ 251 (265)
T PRK14252 243 ATDTIFIKP 251 (265)
T ss_pred CHHHHHhCC
Confidence 999998654
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=361.36 Aligned_cols=213 Identities=25% Similarity=0.424 Sum_probs=182.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh-hhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD-LRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i 1063 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+ .|+++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3789999999953 46999999999999999999999999999999999999999999999999998877644 57889
Q ss_pred EEEccCCCCCcc-cHHhccCCCC----CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLS----QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~----~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
+|+||+|.+|.+ |+++|+.... ..+ ++.+.+.++..++.+. ......+||||||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL-----------RDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHH-----------hhcchhhCCHHHHHHHHHH
Confidence 999999998874 9999986431 112 2345666666666443 2334568999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||++++|++|+|||||++||..+.+.+.+.|++.. .+.|+|++||+++.+.+ ||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999998887643 47899999999988766 899999999999999999998754
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=359.80 Aligned_cols=211 Identities=27% Similarity=0.397 Sum_probs=178.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh-hhccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD-LRSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i~ 1064 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+..+ .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 468999999963 36999999999999999999999999999999999999999999999999998877654 467899
Q ss_pred EEccCCCCCcc-cHHhccCCC-CC--CCH-HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPL-SQ--HTD-QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~-~~--~sd-~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
|+||+|.+|.+ |+++|+... .. ..+ +...++++..+ +++........+||||||||++|||||++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999976 999998631 11 112 22344444433 12222334556899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
+|++|+|||||++||..+.+.+.+.|++..+ ++|+|++||+++.+.+ ||+|+++++|++++.|+++++-
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999987543 7899999999999987 9999999999999999999873
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=362.97 Aligned_cols=223 Identities=22% Similarity=0.344 Sum_probs=190.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCC--ChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKL--GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1057 (1232)
.|+++|++++|+. +.+|+|+||+|++||.+||+|+||||||||+++|.|+.+| ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4899999999953 4699999999999999999999999999999999999763 489999999999876 456
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCC---C-C----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLS---Q-H----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~-~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
+.|++++|+||+|.+|.+|+++|+.... . . .++++.++++.+++.+.+.. .....+.+||+||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKD-------RLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHH-------HhhcChhhCCHHHHH
Confidence 7788999999999999999999997321 1 1 13356777887777543322 234456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++.+|++++|||||++||.++.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999986667899999999999976 9999999999999999999998
Q ss_pred hhcCCHHH
Q 000904 1209 KREGSLFG 1216 (1232)
Q Consensus 1209 ~~~~~~f~ 1216 (1232)
+++...+.
T Consensus 237 ~~~~~~~~ 244 (253)
T PRK14261 237 ENPHEELT 244 (253)
T ss_pred hCCCcHHH
Confidence 76543333
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=368.85 Aligned_cols=212 Identities=27% Similarity=0.380 Sum_probs=182.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCC--CCChHhhhccE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS--KLGLHDLRSRF 1063 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~--~i~l~~LR~~i 1063 (1232)
++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 689999999963 46999999999999999999999999999999999999999999999999985 33456778899
Q ss_pred EEEccCCC--CCcccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDPT--LFNGTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP~--LF~gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
+|+||+|. ++..|+.+|+... ...+ .+++.++++.+++.+.... ...+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-----------PIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-----------CchhCCHHHHHHHHHH
Confidence 99999985 6778899998531 1122 2345678888887654322 3458999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|||+.+|+||||||||++||..+...+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|++++++++
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998753 47899999999999976 999999999999999999998764
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=373.64 Aligned_cols=212 Identities=24% Similarity=0.369 Sum_probs=182.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998764 356788999
Q ss_pred EEccCCCCCc-ccHHhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFN-GTVRYNLDPLS---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|+||+|.++. .|+++|+..+. ..++ +++.++++.+++.+.... ...+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADV-----------RVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-----------chhhCCHHHHHHHHHHHH
Confidence 9999998884 69999986221 1232 235566777777543222 235799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|+++|++|+|||||++||+.+.+.+.+.|++.. ++.|||++||+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998753 47899999999999987 999999999999999999999754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=364.30 Aligned_cols=222 Identities=22% Similarity=0.375 Sum_probs=190.4
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC-----ccEEEECCeeCCC--CCh
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA-----GGKILVDGIDISK--LGL 1056 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~~--i~l 1056 (1232)
+.++++|++++|+. +.+|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.|++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 46999999999953 36999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HhhhccEEEEccCCCCCcccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1057 HDLRSRFGIIPQDPTLFNGTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1057 ~~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
..+|+.++|+||++.+|..|+++|+... +..+ ++++.++++.+++.+++.. .....+.+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 5778899999999999999999999631 1112 3456778888888654432 22345678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecChhhhhh-cCeEEEEeC-----CEEEE
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE--FADCTVITVAHRIPTVMD-CTMVLAISD-----GKLAE 1200 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~-~DrVlVL~~-----G~vvE 1200 (1232)
||++|||||+++|++|+|||||++||.++...+.+.|++. ..++|+|+||||++.+.+ ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 9999999999999999999999999999999999999873 247999999999999987 899999999 99999
Q ss_pred ecChhHHHhhcCCH
Q 000904 1201 YDEPMKLMKREGSL 1214 (1232)
Q Consensus 1201 ~g~p~~Ll~~~~~~ 1214 (1232)
.|+|+++++++...
T Consensus 237 ~~~~~~~~~~~~~~ 250 (261)
T PRK14258 237 FGLTKKIFNSPHDS 250 (261)
T ss_pred eCCHHHHHhCCCCH
Confidence 99999998876553
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=360.67 Aligned_cols=211 Identities=24% Similarity=0.359 Sum_probs=184.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 468999999963 369999999999999999999999999999999999999999999999999987654 3678999
Q ss_pred EccCCCCCcc-cHHhccCCC-C------CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPL-S------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~-~------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|.+ |+++|+... . ...++++.++++..++.+.....+ .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999965 999998621 1 112456778888888876655443 47999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
+++|++|||||||++||..+.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|++++.|+++++.+.+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 999999999999999999999999999987543 7899999999999877 8999999999999999999998654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=368.21 Aligned_cols=213 Identities=25% Similarity=0.384 Sum_probs=184.1
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC--CChHhhhccE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK--LGLHDLRSRF 1063 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~--i~l~~LR~~i 1063 (1232)
++++|++++|+. .+++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++. .+...+|+++
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 689999999963 3469999999999999999999999999999999999999999999999999852 3345678999
Q ss_pred EEEccCC--CCCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDP--TLFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP--~LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
+|+||+| .+|..|+++|+.... ..+ .+++.++++.+++.+.... .+.+||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-----------PPHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999998 578899999995210 122 2457788888888654322 2357999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||++++|++|||||||++||..+...+.+.|++.. .+.|||+||||++.+.+ ||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998754 37899999999999986 999999999999999999998764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=357.83 Aligned_cols=206 Identities=23% Similarity=0.346 Sum_probs=178.3
Q ss_pred eEEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh---h
Q 000904 985 KVDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD---L 1059 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---L 1059 (1232)
.++++|++++|+.+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..+ .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 489999999996432 25999999999999999999999999999999999999999999999999998877654 3
Q ss_pred -hccEEEEccCCCCCcc-cHHhccCC---CCCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1060 -RSRFGIIPQDPTLFNG-TVRYNLDP---LSQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1060 -R~~i~iVpQdP~LF~g-TIr~NLdp---~~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
+++++|+||+|.+|.+ |+++|+.. +... ..+++.++++.+++.+.....| .+||+|||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3679999999998875 99999853 1111 2356788899988876554433 4799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEEEe
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~ 1201 (1232)
++|||||+++|++|||||||++||.++.+.+.+.|++.. .+.|||+|||+++.+..||++++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998753 27899999999999988999999999999874
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=365.02 Aligned_cols=219 Identities=21% Similarity=0.361 Sum_probs=188.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||+++.. .+..
T Consensus 20 ~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 20 VFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred eEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 5999999999963 4699999999999999999999999999999999999874 59999999999864 3445
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCC---C---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLS---Q---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
.+|++++|+||+|.+|..|+++|+.... . ..++++.++++.+++.+.+.. .....+.+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQRL 170 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHHH
Confidence 6788999999999999889999996321 1 124456778888888654432 12344578999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEe---------CCEEEEe
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAIS---------DGKLAEY 1201 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~---------~G~vvE~ 1201 (1232)
+|||||+++|++|||||||++||..+.+.+.+.|++..+++|||+|||+++.+.+ ||++++|+ +|++++.
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999987667899999999999976 99999997 8999999
Q ss_pred cChhHHHhhcC
Q 000904 1202 DEPMKLMKREG 1212 (1232)
Q Consensus 1202 g~p~~Ll~~~~ 1212 (1232)
|++++++.++.
T Consensus 251 g~~~~~~~~~~ 261 (274)
T PRK14265 251 SPTEQMFGSPQ 261 (274)
T ss_pred CCHHHHHhCCC
Confidence 99999987654
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=354.13 Aligned_cols=200 Identities=26% Similarity=0.377 Sum_probs=174.1
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|++ .. .|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 1 i~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGE--QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCC--Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 478999999963 22 39999999999999999999999999999999999999999999999987653 3678999
Q ss_pred EccCCCCCcc-cHHhccCCCCC-------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPLSQ-------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~~~-------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|.+ |+++|+..... ..++++.++++.+++.+.....| .+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999975 99999963211 13456888999998876655443 47999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
+++|++|||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999998753 37899999999999977 9999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=362.43 Aligned_cols=203 Identities=27% Similarity=0.367 Sum_probs=178.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 4999999999963 46999999999999999999999999999999999999999999999998763 5678899
Q ss_pred EEccCCCCCc-ccHHhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000904 1065 IIPQDPTLFN-GTVRYNLDPL-SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
|+||+|.+|. .|+++|+... ....++++.++++.+++.+.... .+.+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999887 6999999742 22235678889999888664433 345899999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 000904 1143 ILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPM 1205 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~ 1205 (1232)
+|||||||++||..+...+.+.|++.. .++|||+||||++.+.+ ||+|++|++|++++.++.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999998753 37899999999999876 9999999999999987654
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=363.84 Aligned_cols=219 Identities=24% Similarity=0.407 Sum_probs=186.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 4899999999963 3599999999999999999999999999999999999974 69999999999854 4456
Q ss_pred hhhccEEEEccCCCCCc-ccHHhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1058 DLRSRFGIIPQDPTLFN-GTVRYNLDPL----SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~-gTIr~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
.+|+.++|+||++.+|. .|+++|+... +.. .++++.++++.+++.+.+.. .....+.+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-------RLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 77889999999999886 5999998521 111 13456778888887543321 12334568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEe------CCEEEEe
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAIS------DGKLAEY 1201 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~------~G~vvE~ 1201 (1232)
||++||||++++|++|||||||++||..+...+.+.|++..+++|||+|||+++.+.+ ||+|++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999986567899999999999876 99999996 8999999
Q ss_pred cChhHHHhhcC
Q 000904 1202 DEPMKLMKREG 1212 (1232)
Q Consensus 1202 g~p~~Ll~~~~ 1212 (1232)
|+++++++++.
T Consensus 235 ~~~~~~~~~~~ 245 (258)
T PRK14241 235 DDTEKIFSNPT 245 (258)
T ss_pred CCHHHHHhCcC
Confidence 99999987643
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=374.61 Aligned_cols=225 Identities=19% Similarity=0.291 Sum_probs=187.8
Q ss_pred eEEEEeeEeEecC--CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc----CCccEEEECCeeCCCCChHh
Q 000904 985 KVDICDLQIRYRP--DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE----PAGGKILVDGIDISKLGLHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~--~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e----p~~G~I~IDG~dI~~i~l~~ 1058 (1232)
-++++|++++|.. +...+++||||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||+|+.+++.++
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3789999999953 22469999999999999999999999999999999999996 58999999999999888766
Q ss_pred hh----ccEEEEccCCCC--C-cccHHhccC-C---C---CC------CCHHHHHHHHHHcCCcHHHHhhccCCcccccC
Q 000904 1059 LR----SRFGIIPQDPTL--F-NGTVRYNLD-P---L---SQ------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVE 1118 (1232)
Q Consensus 1059 LR----~~i~iVpQdP~L--F-~gTIr~NLd-p---~---~~------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e 1118 (1232)
++ ++|+||||+|.. + ..||.+|+. + . +. ..++++.++|+.++|.+.... ...
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA--------MRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH--------HhC
Confidence 53 479999999963 3 347887773 1 1 10 113467889999999743211 122
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeC
Q 000904 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISD 1195 (1232)
Q Consensus 1119 ~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~ 1195 (1232)
.+.+||||||||++|||||+.+|+|||+||||++||..+...+.+.|++.. .+.|+|+||||++.+.+ ||||+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 346899999999999999999999999999999999999999999998754 37899999999999977 999999999
Q ss_pred CEEEEecChhHHHhhcCCHHHH
Q 000904 1196 GKLAEYDEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1196 G~vvE~g~p~~Ll~~~~~~f~~ 1217 (1232)
|+|+|.|+++++++++...|.+
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHH
Confidence 9999999999999876666655
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=366.00 Aligned_cols=227 Identities=25% Similarity=0.339 Sum_probs=188.3
Q ss_pred eEEEEeeEeEecC-------CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH
Q 000904 985 KVDICDLQIRYRP-------DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~-------~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~ 1057 (1232)
.|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 3899999999952 124699999999999999999999999999999999999999999999999999766666
Q ss_pred hhhccEEEEccCCC--CCcc-cHHhccCC---CC-----CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChh
Q 000904 1058 DLRSRFGIIPQDPT--LFNG-TVRYNLDP---LS-----QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMG 1126 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~--LF~g-TIr~NLdp---~~-----~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgG 1126 (1232)
..+++++|+||+|. ++.. |+.+|+.. .. ...++++.++++.+++.+..... ...+||+|
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY----------YPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhc----------CchhcCHH
Confidence 66778999999985 4433 77777641 11 11235678899999984322211 23579999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
||||++|||||+++|+||||||||++||+++.+.+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998753 37899999999999987 99999999999999999
Q ss_pred hhHHHhhcC-CHHHHHHHH
Q 000904 1204 PMKLMKREG-SLFGQLVRE 1221 (1232)
Q Consensus 1204 p~~Ll~~~~-~~f~~l~~~ 1221 (1232)
++++.+++. ..+++++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~ 252 (267)
T PRK15112 234 TADVLASPLHELTKRLIAG 252 (267)
T ss_pred HHHHhcCCCCHHHHHHHHh
Confidence 999987653 345566654
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=343.09 Aligned_cols=172 Identities=37% Similarity=0.619 Sum_probs=161.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+.+..++++++||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+.+.+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 46899999996443469999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000904 1066 IPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV 1145 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILI 1145 (1232)
++|+|.+|++|+++|+ ||+|||||++||||++++|++|+
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 99999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCeEEEEeCCEE
Q 000904 1146 LDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMDCTMVLAISDGKL 1198 (1232)
Q Consensus 1146 LDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~~G~v 1198 (1232)
|||||++||..+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998753 47899999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=356.91 Aligned_cols=197 Identities=28% Similarity=0.402 Sum_probs=169.2
Q ss_pred EEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEE
Q 000904 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGII 1066 (1232)
Q Consensus 987 ~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iV 1066 (1232)
+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 36799999953 46999999999999999999999999999999999999999999999998764 467899999
Q ss_pred ccCCCC---CcccHHhccCCCCC-----------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1067 PQDPTL---FNGTVRYNLDPLSQ-----------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1067 pQdP~L---F~gTIr~NLdp~~~-----------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
||+|.+ |..|+++|+..... ..++++.++++.+++.+..... ..+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHH
Confidence 999976 66899999853211 1234678889998887654432 3579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
|||||+++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998753 57899999999999977 8999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=364.53 Aligned_cols=219 Identities=27% Similarity=0.379 Sum_probs=188.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCCC-hHh
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKLG-LHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i~-l~~ 1058 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999963 4699999999999999999999999999999999999986 6999999999998763 456
Q ss_pred hhccEEEEccCCCCCcccHHhccCCC----CCCCHHH----HHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1059 LRSRFGIIPQDPTLFNGTVRYNLDPL----SQHTDQE----IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~sd~e----I~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
+|++++|+||+|.+|..|+++|+... ...++++ +.++++.+++.+... +.....+.+||||||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK-------DRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhCCcccCCHHHHHH
Confidence 78899999999999999999999631 1134433 345667777654321 22334567899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
++|||||+++|++|||||||++||..+.+.+.+.|++..+++|||+|||+++.+.+ |||+++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999986556899999999999877 99999999999999999999987
Q ss_pred hcC
Q 000904 1210 REG 1212 (1232)
Q Consensus 1210 ~~~ 1212 (1232)
.+.
T Consensus 252 ~~~ 254 (276)
T PRK14271 252 SPK 254 (276)
T ss_pred CcC
Confidence 643
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=324.92 Aligned_cols=210 Identities=24% Similarity=0.368 Sum_probs=184.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|.+++|.++|.. .+ =..+++|++||++||+|+||||||||++++.|+..|.+|+|.|+|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~-~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGH-LP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCc-ce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 567899999963 33 256899999999999999999999999999999999999999999999877664 467999
Q ss_pred EccCCCCCcc-cHHhccCCCC-------CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPLS-------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~~-------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
++||..||.. ||++|+...- ....+.+..++.++|+.++..++|. .||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence 9999999965 9999997321 1245679999999999999999985 6999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcC
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~ 1212 (1232)
+|+.+||+||||.|+||+.-.+.+...+.+.. ++.|+++|||.++-+.. +|+++++++|||++.|+.++++..++
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999888888776533 47899999999999877 89999999999999999999997654
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=360.57 Aligned_cols=219 Identities=23% Similarity=0.366 Sum_probs=188.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCC-CCChHh
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDIS-KLGLHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~-~i~l~~ 1058 (1232)
.++++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4789999999963 4699999999999999999999999999999999999996 5999999999986 456677
Q ss_pred hhccEEEEccCCCCCcccHHhccCCC---CC-CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1059 LRSRFGIIPQDPTLFNGTVRYNLDPL---SQ-HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~gTIr~NLdp~---~~-~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
+|+.++|+||+|.+|..|+++|+... .. .. ++++.++++.+++.+.+. ......+.+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHHH
Confidence 88999999999999999999999632 11 11 234567788787765432 12233456899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
++|||||+.+|++|||||||++||..+...+.+.|++..++.|||+|||+++.+.+ ||++++|++|++++.|+++++.+
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999987667899999999999887 99999999999999999999876
Q ss_pred hcC
Q 000904 1210 REG 1212 (1232)
Q Consensus 1210 ~~~ 1212 (1232)
++.
T Consensus 234 ~~~ 236 (249)
T PRK14253 234 NPK 236 (249)
T ss_pred CCC
Confidence 543
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=362.25 Aligned_cols=220 Identities=20% Similarity=0.298 Sum_probs=190.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCC--ChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKL--GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1057 (1232)
.+.+++.+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.|+... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 3788999999963 4699999999999999999999999999999999999987 799999999998653 444
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCCC------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLSQ------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~~------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
.+|++++|+||+|.+|..|+++|+..... ..++++.++++.+++.+.+... ..+.+.+||+|||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-------hhCCcccCCHHHHHHH
Confidence 67889999999999999999999964211 1235688899999886655432 2345678999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEe--------CCEEEEec
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAIS--------DGKLAEYD 1202 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~--------~G~vvE~g 1202 (1232)
+|||||+++|++|+|||||++||..+...+.+.|++..+++|+|+|||+++.+.+ ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999987667899999999999877 99999996 89999999
Q ss_pred ChhHHHhhcCC
Q 000904 1203 EPMKLMKREGS 1213 (1232)
Q Consensus 1203 ~p~~Ll~~~~~ 1213 (1232)
+++++++++..
T Consensus 239 ~~~~~~~~~~~ 249 (261)
T PRK14263 239 PTAQIFQNPRE 249 (261)
T ss_pred CHHHHHhCCCc
Confidence 99999876543
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=366.45 Aligned_cols=223 Identities=22% Similarity=0.320 Sum_probs=188.4
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCCC--Ch
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISKL--GL 1056 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~i--~l 1056 (1232)
..++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.++... ..
T Consensus 38 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 38 PHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 35899999999953 359999999999999999999999999999999999865 4999999999998653 33
Q ss_pred HhhhccEEEEccCCCCCcccHHhccCCCC---CC-C----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1057 HDLRSRFGIIPQDPTLFNGTVRYNLDPLS---QH-T----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1057 ~~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~~-s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
..+|++++|+||+|.+|.+|+++|+.... .. + ++++.++++.+++.+.+.. .....+..||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD-------RLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh-------HhhCChhhCCHHHH
Confidence 45788999999999999899999996311 11 1 2346678888877543221 12334568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
||++|||||+++|++|||||||++||.++.+.+.+.|++..+++|||++|||++.+.+ ||+|++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999986567899999999999977 999999999999999999999
Q ss_pred HhhcCCHH
Q 000904 1208 MKREGSLF 1215 (1232)
Q Consensus 1208 l~~~~~~f 1215 (1232)
.+++...+
T Consensus 269 ~~~~~~~~ 276 (286)
T PRK14275 269 FTNPKDRM 276 (286)
T ss_pred HhCCCcHH
Confidence 87655433
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=363.04 Aligned_cols=213 Identities=23% Similarity=0.340 Sum_probs=182.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i 1063 (1232)
.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4899999999953 469999999999999999999999999999999999999999999999999988876665 4569
Q ss_pred EEEccCCCCCcc-cHHhccCCCCC-------------------C---CHHHHHHHHHHcCCcHHHHhhccCCcccccCCC
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLSQ-------------------H---TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~~-------------------~---sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G 1120 (1232)
+|+||+|.+|.+ |+++|+..... . ..+++.++++..++.+. ....+
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH-----------ANRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh-----------hhCCh
Confidence 999999999976 99999863110 0 01234555666655433 33445
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
.+||||||||++||||++.+|++|||||||++||..+.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 68999999999999999999999999999999999999999999987532 7899999999999977 99999999999
Q ss_pred EEEecChhHHHhh
Q 000904 1198 LAEYDEPMKLMKR 1210 (1232)
Q Consensus 1198 vvE~g~p~~Ll~~ 1210 (1232)
+++.|+++++.++
T Consensus 232 i~~~~~~~~~~~~ 244 (255)
T PRK11300 232 PLANGTPEEIRNN 244 (255)
T ss_pred EEecCCHHHHhhC
Confidence 9999999998754
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=361.45 Aligned_cols=222 Identities=22% Similarity=0.346 Sum_probs=188.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc--C---CccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE--P---AGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e--p---~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.|+++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999963 469999999999999999999999999999999999975 4 58999999999864 3455
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC---CC-CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL---SQ-HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~---~~-~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|..|+++|+... .. .. ++++.++++.+++.+.+. ......+.+||+||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHHH
Confidence 678899999999999999999998621 11 11 345667778877754332 1233455789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++++|++|||||||++||..+.+.+.+.|++..++.|+|+||||++.+.+ ||+|++|++|++++.|++.+++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999986557899999999999976 9999999999999999999998
Q ss_pred hhcCCHH
Q 000904 1209 KREGSLF 1215 (1232)
Q Consensus 1209 ~~~~~~f 1215 (1232)
.++...+
T Consensus 236 ~~~~~~~ 242 (252)
T PRK14255 236 LNPKEKE 242 (252)
T ss_pred cCCCChH
Confidence 7655443
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=377.09 Aligned_cols=205 Identities=23% Similarity=0.280 Sum_probs=177.0
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCe----eCCCCChHhh---h-ccEEEEccCCC
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI----DISKLGLHDL---R-SRFGIIPQDPT 1071 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~----dI~~i~l~~L---R-~~i~iVpQdP~ 1071 (1232)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||. |+.+.+.+++ | ++++||||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45899999999999999999999999999999999999999999999996 6777765544 3 58999999999
Q ss_pred CCc-ccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000904 1072 LFN-GTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI 1143 (1232)
Q Consensus 1072 LF~-gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kI 1143 (1232)
+|. .|+++|+... ...+ .+++.++++.++|.+..... +.+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-----------~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-----------PGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 6999999621 1122 24567889999887654443 347999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHH
Q 000904 1144 LVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1144 LILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f 1215 (1232)
|+|||||++||+.+...+++.|++..+ ++|+|+||||++.+.+ ||||++|++|++++.|+|++++.++...|
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~ 260 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDY 260 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHH
Confidence 999999999999999999999987543 7899999999999866 99999999999999999999997764433
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=360.74 Aligned_cols=222 Identities=25% Similarity=0.343 Sum_probs=185.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC-----ccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA-----GGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~~--i~l~ 1057 (1232)
-++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.+++. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 3789999999963 46999999999999999999999999999999999999874 8999999999975 3445
Q ss_pred hhhccEEEEccCCCCCc-ccHHhccCCC---CC-CCHHH----HHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1058 DLRSRFGIIPQDPTLFN-GTVRYNLDPL---SQ-HTDQE----IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~-gTIr~NLdp~---~~-~sd~e----I~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
.+|++++|+||+|.+|. .|+++|+... .. ..+++ +.+.++..++.+.+. ..++ ....+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~----~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK---DRLK----TPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhh---hhhc----CCcccCCHHHH
Confidence 77889999999999887 4999999521 11 12332 334455565543321 1222 34568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
||++|||||+++|++|+|||||++||..+.+.+.+.|++..+++|+|++||+++.+.+ ||+|++|++|++++.|+|+++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999986567999999999999987 899999999999999999999
Q ss_pred HhhcCCHH
Q 000904 1208 MKREGSLF 1215 (1232)
Q Consensus 1208 l~~~~~~f 1215 (1232)
++++...+
T Consensus 235 ~~~~~~~~ 242 (252)
T PRK14272 235 FTNPRDER 242 (252)
T ss_pred HhCcCcHH
Confidence 88765544
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=355.53 Aligned_cols=207 Identities=25% Similarity=0.402 Sum_probs=172.7
Q ss_pred EEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh---Hhhh
Q 000904 986 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL---HDLR 1060 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR 1060 (1232)
|+++|++++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996321 269999999999999999999999999999999999999999999999999988763 5678
Q ss_pred ccEEEEccCCC--CC-cccHHhccCC----CCC-CCHHH---H-HHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1061 SRFGIIPQDPT--LF-NGTVRYNLDP----LSQ-HTDQE---I-WEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1061 ~~i~iVpQdP~--LF-~gTIr~NLdp----~~~-~sd~e---I-~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
++++|+||+|. ++ ..|+++|+.. .+. ..+++ . .++++..++.+ ......+.+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 89999999993 44 5799999852 111 11121 1 35666666632 122334568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
||++|||||+++|++|+|||||++||.++.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999987543 7899999999999985 9999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=355.16 Aligned_cols=208 Identities=24% Similarity=0.378 Sum_probs=182.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. . ..|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+. .+++++|
T Consensus 2 l~~~~l~~~~~~-~---~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH-L---PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC-c---cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 689999999963 2 249999999999999999999999999999999999999999999999887644 3578999
Q ss_pred EccCCCCCcc-cHHhccCC-CCC------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDP-LSQ------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp-~~~------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|.+ |+++|+.. +.. ..++++.++++.+++.+.....| ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999975 99999963 211 12456889999999877665544 37999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+++|++|||||||++||.++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999987533 7899999999999876 899999999999999999999865
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=375.40 Aligned_cols=212 Identities=25% Similarity=0.420 Sum_probs=183.9
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|+.+.+ ...|++++
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999997654 56788999
Q ss_pred EEccCCCCC-cccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLF-NGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF-~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|+||++.++ ..|+++|+..++ ..+ .+.+.++++.+++.+.. +.. ..+||+|||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-------~~~----~~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-------DAR----VSDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-------CCC----hhhCCHHHHHHHHHHHH
Confidence 999999886 569999996322 122 23355677777775432 222 34799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|+.+|++|||||||++||+.+...+.+.|++.. .+.|||++||+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998853 47899999999999987 999999999999999999999764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=357.40 Aligned_cols=210 Identities=25% Similarity=0.398 Sum_probs=183.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 468999999963 469999999999999999999999999999999999999999999999999986653 4788999
Q ss_pred EccCCCCCcc-cHHhccCCCC---CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPLS---QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~~---~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|.+ |+++|+.... .. .++++.++++..++.+..... ..+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999975 9999996321 11 234577888888886554432 357999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+++|++++|||||++||.++.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|++++.|+++++++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999987533 6899999999999877 999999999999999999999764
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=353.27 Aligned_cols=203 Identities=25% Similarity=0.374 Sum_probs=174.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh---hhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD---LRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR~~ 1062 (1232)
|+++|++++|++ ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++.++ +|++
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLG-GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecC-CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 689999999943 246999999999999999999999999999999999999999999999999998776543 6889
Q ss_pred EEEEccCCCC-CcccHHhccCCC---CCCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1063 FGIIPQDPTL-FNGTVRYNLDPL---SQHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1063 i~iVpQdP~L-F~gTIr~NLdp~---~~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
++|+||+|.+ +..|+++|+... ...++ +++.++++..++.+...+ ...+||+|||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHHH
Confidence 9999999986 467999999632 12222 346678888887655433 3358999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE 1200 (1232)
||++++|++|||||||++||.++.+.+.+.|++.. ++.|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999998753 46899999999999987 89999999999853
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=362.75 Aligned_cols=211 Identities=24% Similarity=0.377 Sum_probs=185.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 688999999953 469999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EccCCC-CCcccHHhccCCCC----C-------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHH
Q 000904 1066 IPQDPT-LFNGTVRYNLDPLS----Q-------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCL 1133 (1232)
Q Consensus 1066 VpQdP~-LF~gTIr~NLdp~~----~-------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~L 1133 (1232)
+||+|. .+..|+++|+.... . ..++++.++++.+++.+.... .+.+||+|||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHH
Confidence 999995 55789999995321 0 123457888888888654332 345799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1134 GRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1134 ARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||++.+|+++||||||++||..+...+.+.|++.. .+.|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999998753 36899999999999966 99999999999999999999865
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=370.16 Aligned_cols=211 Identities=24% Similarity=0.372 Sum_probs=186.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|++ +.+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+ ....+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999977 44678899999
Q ss_pred EccCCCCCcc-cHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|.+ |+++|+.... ... ++++.++++.+++.+...+ ...+||+|||||++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-----------KIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-----------chhhCCHHHHHHHHHHHHH
Confidence 9999999876 9999996321 112 3457778888887655332 2457999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+++|++|+|||||++||+.+.+.+.+.|++..++.|||++||+++.+.+ ||||++|++|++++.|+++++.++
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999987668999999999999988 999999999999999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=353.98 Aligned_cols=200 Identities=28% Similarity=0.437 Sum_probs=172.6
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|.. +++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 468999999953 469999999999999999999999999999999999999999999999988753 46789999
Q ss_pred EccCCCCCcc-cHHhccCCCC---CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPLS---QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~~---~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|.+ |+++|+.... .. .++++.++++..++.+.... ...+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANK-----------RVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhC-----------cHhhCCHHHHHHHHHHHHH
Confidence 9999998875 9999985321 11 13456777887777654433 3457999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
+++|++|+|||||++||.++.+.+.+.|++.. +++|||+||||++.+.+ ||++++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998753 47899999999999877 9999999999998864
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=357.40 Aligned_cols=210 Identities=27% Similarity=0.424 Sum_probs=184.0
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|.. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. .|++++|
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999963 38999999999999999999999999999999999999999999999999987654 3689999
Q ss_pred EccCCCCCc-ccHHhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFN-GTVRYNLDPL---SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||++.+|. .|+++|+... ... .++++.++++.+++.+...+.+ .+||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999885 7999999621 111 2345778888888876655443 47999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
+++|++|+|||||++||..+.+.+.+.|++... ++|+|++||+++.+.+ ||+|++|++|++++.|+++++.+.+
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999999999987533 7899999999999887 9999999999999999999998754
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=369.04 Aligned_cols=220 Identities=25% Similarity=0.433 Sum_probs=189.2
Q ss_pred cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCCC--C
Q 000904 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISKL--G 1055 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~i--~ 1055 (1232)
...|+++|++++|.. .++|+++||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 346999999999963 469999999999999999999999999999999999986 6899999999999753 4
Q ss_pred hHhhhccEEEEccCCCCCcccHHhccCCCC----------------C----CCHHHHHHHHHHcCCcHHHHhhccCCccc
Q 000904 1056 LHDLRSRFGIIPQDPTLFNGTVRYNLDPLS----------------Q----HTDQEIWEVLAKCHLGEAVREKENGLDSL 1115 (1232)
Q Consensus 1056 l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~----------------~----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~ 1115 (1232)
...+|++++|+||+|.+|.+|+++|+.... . ..++++.++++.+++.+.+. ..
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-------DR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh-------HH
Confidence 567889999999999999999999996210 0 11345778888888754332 23
Q ss_pred ccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeE-EEE
Q 000904 1116 VVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMV-LAI 1193 (1232)
Q Consensus 1116 v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrV-lVL 1193 (1232)
....+.+||||||||++|||||+++|+||||||||++||..+...+.+.|++..++.|+|+|||+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 34556799999999999999999999999999999999999999999999987667899999999999887 9997 567
Q ss_pred eCCEEEEecChhHHHhhc
Q 000904 1194 SDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1194 ~~G~vvE~g~p~~Ll~~~ 1211 (1232)
++|++++.|+++++++++
T Consensus 274 ~~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 274 TGGELVEYDDTDKIFENP 291 (305)
T ss_pred cCCEEEEeCCHHHHHhCc
Confidence 999999999999998654
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=358.61 Aligned_cols=221 Identities=22% Similarity=0.349 Sum_probs=183.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCee-----CCCCChHh-
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGID-----ISKLGLHD- 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~d-----I~~i~l~~- 1058 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+..+
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 4899999999953 469999999999999999999999999999999999999999999999999 87776554
Q ss_pred ---hhccEEEEccCCC--CC-cccHHhccC----CCCCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1059 ---LRSRFGIIPQDPT--LF-NGTVRYNLD----PLSQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1059 ---LR~~i~iVpQdP~--LF-~gTIr~NLd----p~~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
.|+.++|+||+|. ++ ..|+++|+. .+... .++++.++++.+++.+ ......+.+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 153 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFS 153 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccCC
Confidence 3567999999994 33 347777763 12211 1334556666666642 12334567899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~ 1201 (1232)
||||||++|||||+++|+||+|||||++||.++.+.+.+.|++..+ +.|||+|||+++.+.+ ||+|++|++|++++.
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999987533 7899999999999986 999999999999999
Q ss_pred cChhHHHhhcCCHHHH
Q 000904 1202 DEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1202 g~p~~Ll~~~~~~f~~ 1217 (1232)
|+|+++..++...|.+
T Consensus 234 ~~~~~~~~~~~~~~~~ 249 (258)
T PRK11701 234 GLTDQVLDDPQHPYTQ 249 (258)
T ss_pred CCHHHHhcCCCCHHHH
Confidence 9999998765544543
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=354.77 Aligned_cols=227 Identities=24% Similarity=0.391 Sum_probs=186.4
Q ss_pred EEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-C----CccEEEECCeeCCCCChHh
Q 000904 986 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-P----AGGKILVDGIDISKLGLHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-p----~~G~I~IDG~dI~~i~l~~ 1058 (1232)
++++|+++.|..+. ..+++||||++++||.+||||.|||||||+.++++|+++ | .+|+|.+||.|+-+++-++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999996432 368999999999999999999999999999999999998 4 5799999999999999765
Q ss_pred h---h-ccEEEEccCCC-CCcc--cHHhcc----CCCCCC-----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCC
Q 000904 1059 L---R-SRFGIIPQDPT-LFNG--TVRYNL----DPLSQH-----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSN 1122 (1232)
Q Consensus 1059 L---R-~~i~iVpQdP~-LF~g--TIr~NL----dp~~~~-----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~n 1122 (1232)
+ | ++|++|||||. -|+. ||.+-+ ..-... ..+++.++|+.+++.+--+.+ ..-+++
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~--------~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRL--------KSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHH--------hhCCcc
Confidence 3 3 58999999994 2222 333222 110111 134578889999987542221 223578
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEE
Q 000904 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLA 1199 (1232)
Q Consensus 1123 LSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv 1199 (1232)
||||||||+.||-||+.+|++||.||||++||..+.+.|.+.|++.. .+.|+|+||||+..+.. ||||+||.+|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999988744 48999999999999988 9999999999999
Q ss_pred EecChhHHHhhcCCHHHHHHH
Q 000904 1200 EYDEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1200 E~g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
|.|+.+++++++...|.+..-
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll 254 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLL 254 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHH
Confidence 999999999999887766543
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=354.62 Aligned_cols=209 Identities=24% Similarity=0.311 Sum_probs=180.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|.. .++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4899999999953 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCCCCcccHHhccCCC----CC-CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1065 IIPQDPTLFNGTVRYNLDPL----SQ-HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1065 iVpQdP~LF~gTIr~NLdp~----~~-~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
|+||+|.+|+.|+++|+... +. ..++++.++++.+++.+... ...+.+||+|||||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTIL----------TKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHh----------cCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999998631 11 13445677888887753221 23456899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEe-CCEEEEecChh
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAIS-DGKLAEYDEPM 1205 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~-~G~vvE~g~p~ 1205 (1232)
+|++|||||||++||..+.+.+.+.|++.. .++|||+|||+++.+..||++++|+ ++..++.|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999998753 3789999999999998899999995 55556667764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=350.91 Aligned_cols=200 Identities=23% Similarity=0.383 Sum_probs=175.0
Q ss_pred EEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEE
Q 000904 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGII 1066 (1232)
Q Consensus 987 ~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iV 1066 (1232)
+++|++++|+. .++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+.+ ..|++++|+
T Consensus 2 ~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (213)
T TIGR01277 2 ALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSML 75 (213)
T ss_pred eEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEE
Confidence 68999999952 568999999999999999999999999999999999999999999999987643 467889999
Q ss_pred ccCCCCCcc-cHHhccCC-CC---C---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc
Q 000904 1067 PQDPTLFNG-TVRYNLDP-LS---Q---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL 1138 (1232)
Q Consensus 1067 pQdP~LF~g-TIr~NLdp-~~---~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL 1138 (1232)
||+|.+|.+ |+++|+.. +. . ..++++.++++.+++.+...+.| .+||+|||||++||||++
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCLV 144 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 999998874 99999852 21 1 13456788999998876654443 479999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1139 ~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
++|++++|||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|+
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999998754 27899999999999876 99999999999999875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=357.98 Aligned_cols=224 Identities=21% Similarity=0.317 Sum_probs=185.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC----CccEEEECCeeCCCCChHhhh
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP----AGGKILVDGIDISKLGLHDLR 1060 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep----~~G~I~IDG~dI~~i~l~~LR 1060 (1232)
.++++|++++| + .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..+
T Consensus 4 ~l~~~~l~~~~--~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA--A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe--c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 48999999999 2 3699999999999999999999999999999999999999 999999999998632 2234
Q ss_pred ccEEEEccCCC-CCc--ccHHhccCC----CC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1061 SRFGIIPQDPT-LFN--GTVRYNLDP----LS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1061 ~~i~iVpQdP~-LF~--gTIr~NLdp----~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
+.++|+||+|. .|. .|+.+|+.. .+ ...+++++++++.+++.+.. +.+...+.+||+|||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA--------RVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChh--------hhhhcCCcccCHHHHHHHH
Confidence 67999999995 443 477666521 22 23456788999998886521 1223345689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||+++|+||||||||++||..+.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|+++++++
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 9999999999999999999999999999999998753 27899999999999976 99999999999999999999987
Q ss_pred hcCC-HHHHHHHH
Q 000904 1210 REGS-LFGQLVRE 1221 (1232)
Q Consensus 1210 ~~~~-~f~~l~~~ 1221 (1232)
++.. .++.++..
T Consensus 231 ~~~~~~~~~~~~~ 243 (254)
T PRK10418 231 APKHAVTRSLVSA 243 (254)
T ss_pred CCCCHHHHHHHHh
Confidence 6554 45555543
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=352.97 Aligned_cols=200 Identities=27% Similarity=0.442 Sum_probs=172.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC--CChHhhhccE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK--LGLHDLRSRF 1063 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~--i~l~~LR~~i 1063 (1232)
++++|++++|+. .++|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .....+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 468999999963 469999999999999999999999999999999999999999999999999853 3456778899
Q ss_pred EEEccCCCCCc-ccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
+|+||+|.+|. .|+++|+... ...+ ++++.++++.+++.+.... ...+||+|||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA-----------YPAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhh-----------CccccCHHHHHHHHHH
Confidence 99999999886 6999998632 1222 2346677777777654433 3358999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEE
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKL 1198 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~v 1198 (1232)
||++++|++|||||||++||.++.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999753 47899999999999976 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=357.78 Aligned_cols=223 Identities=27% Similarity=0.376 Sum_probs=188.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECC------eeCCCCChHh
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG------IDISKLGLHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG------~dI~~i~l~~ 1058 (1232)
.++++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++| .|+.+.+..+
T Consensus 10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 4899999999953 4699999999999999999999999999999999999999986666554 6777777778
Q ss_pred hhccEEEEccCCCCCcc-cHHhccCCC----CCCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1059 LRSRFGIIPQDPTLFNG-TVRYNLDPL----SQHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~g-TIr~NLdp~----~~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
+|++++|+||+|.+|.+ |+++|+... +...+ +++.++++..++.+.+.. .....+..||+||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-------RLNSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-------hhcCCcccCCHHHHH
Confidence 89999999999999875 999999631 11122 235677888887643311 122345689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++++|++|+|||||++||..+...+.+.|++...++|||++||+++.+.+ ||++++|++|++++.|+++++.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999965 9999999999999999999998
Q ss_pred hhcCCHHH
Q 000904 1209 KREGSLFG 1216 (1232)
Q Consensus 1209 ~~~~~~f~ 1216 (1232)
+++...+.
T Consensus 241 ~~~~~~~~ 248 (257)
T PRK14246 241 TSPKNELT 248 (257)
T ss_pred hCCCcHHH
Confidence 77654443
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=335.19 Aligned_cols=459 Identities=21% Similarity=0.270 Sum_probs=319.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 000904 719 TLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLG 798 (1232)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~ 798 (1232)
.+...........+|.+...+++.++.++++.+|..-+++...++++.++.+|+..+... ...+....++.+..++.++
T Consensus 62 ~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~-~s~lp~~~qa~il~l~s~a 140 (546)
T COG4615 62 MVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFA-FSRLPELVQAIILTLGSAA 140 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeeh-HhhhHHHHHHHHHHHHHHH
Confidence 334445566677889999999999999999999999999999999999999999988732 2334446777888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcC
Q 000904 799 VLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNA 878 (1232)
Q Consensus 799 v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~ 878 (1232)
..++.+|+.+.+....+++..+.+...+...-+-.+...++...+.++.+..+.|.+..+......+....+. ...+.
T Consensus 141 YLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~--~~~~a 218 (546)
T COG4615 141 YLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNL--YIPDA 218 (546)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhh--cCcch
Confidence 9999999987766555555444332222111111111122234577788888889888877665443332221 11111
Q ss_pred CchH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 879 SPFF-QTF-------AANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANY 950 (1232)
Q Consensus 879 ~~~~-~~~-------~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~ 950 (1232)
+.+. +.. .+..|-...+-.+... + +.+.+. .+--+...+.......+-+..++.+++.....+..+
T Consensus 219 ~~~r~~~~~~n~f~~la~~~~ni~l~~lIGl----v-f~lal~-~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~A 292 (546)
T COG4615 219 QEYRHHIIRANTFHLLAVNWSNIMLLGLIGL----V-FWLALS-LGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTA 292 (546)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH----H-HHHHHh-hccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHH
Confidence 1111 111 1223322221111111 1 001111 111111111111122234567777777777788888
Q ss_pred HHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHH
Q 000904 951 IISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLI 1030 (1232)
Q Consensus 951 ~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl 1030 (1232)
.++..++.++...|..+. -....+.|+|. .|+++||.|.|.++. .-+..||++|++||.|-|+|.|||||||++
T Consensus 293 qvA~~kiakle~~~~~a~--~~~~q~~p~~~---~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~ 366 (546)
T COG4615 293 QVAFNKIAKLELAPYKAD--FPRPQAFPDWK---TLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLA 366 (546)
T ss_pred HHHHHHHHHhhcCCcccc--CCCCCcCCccc---ceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHH
Confidence 888899888765322111 11222334454 599999999997653 457889999999999999999999999999
Q ss_pred HHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhcc
Q 000904 1031 GALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKEN 1110 (1232)
Q Consensus 1031 ~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~ 1110 (1232)
++|.|++.|++|+|++||.+++.-++++.|+-++-|+-|..||+.++- |-+..+.+.|..-|++..+.....-..+
T Consensus 367 ~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~----~e~~as~q~i~~~LqrLel~~ktsl~d~ 442 (546)
T COG4615 367 MLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG----PEGKASPQLIEKWLQRLELAHKTSLNDG 442 (546)
T ss_pred HHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC----CccCCChHHHHHHHHHHHHhhhhcccCC
Confidence 999999999999999999999999999999999999999999987652 3344677888888877766554432211
Q ss_pred CCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecChhhhhhcC
Q 000904 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE--FADCTVITVAHRIPTVMDCT 1188 (1232)
Q Consensus 1111 gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~~D 1188 (1232)
.+ ....||-|||.|+++--|++.+.+|+++||=-+..|+.-++...+.+--. ..|+||+.||||-+.-..+|
T Consensus 443 ~f------s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~AD 516 (546)
T COG4615 443 RF------SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHAD 516 (546)
T ss_pred cc------cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHH
Confidence 11 12468999999999999999999999999999999999988877665332 25899999999999999999
Q ss_pred eEEEEeCCEEEEec
Q 000904 1189 MVLAISDGKLAEYD 1202 (1232)
Q Consensus 1189 rVlVL~~G~vvE~g 1202 (1232)
|++.|++|+++|..
T Consensus 517 rll~~~~G~~~e~t 530 (546)
T COG4615 517 RLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHhcCceeecc
Confidence 99999999999853
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=373.13 Aligned_cols=213 Identities=23% Similarity=0.341 Sum_probs=184.9
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC----ChHhhhc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL----GLHDLRS 1061 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~~LR~ 1061 (1232)
+++ |++++|.. . .+ |+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++... .....|+
T Consensus 2 l~~-~l~k~~~~--~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGD--L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCC--E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 566 89999953 2 23 99999999999999999999999999999999999999999999998653 2445678
Q ss_pred cEEEEccCCCCCc-ccHHhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1062 RFGIIPQDPTLFN-GTVRYNLDPL-SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~-gTIr~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
+++|+||++.+|. .|+++|+... ....++++.++++.+++.+..... +.+||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRY-----------PGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCC-----------cccCCHHHHHHHHHHHHHHc
Confidence 9999999999986 5999999732 233456788999999887655443 35799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCH
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSL 1214 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~ 1214 (1232)
+|++|+|||||++||..+.+.+.+.|++..+ +.|+|+||||++.+.. ||+|++|++|++++.|+|++++.++...
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~~ 223 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAMR 223 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcchh
Confidence 9999999999999999999999999987543 6899999999998877 9999999999999999999999887543
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=369.12 Aligned_cols=203 Identities=27% Similarity=0.430 Sum_probs=176.6
Q ss_pred EecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCC
Q 000904 994 RYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLF 1073 (1232)
Q Consensus 994 ~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF 1073 (1232)
+|+ ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.. ...++|++++|+||++.+|
T Consensus 2 ~y~--~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYG--DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeC--CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 464 2469999999999999999999999999999999999999999999999999976 3456788999999999988
Q ss_pred cc-cHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000904 1074 NG-TVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV 1145 (1232)
Q Consensus 1074 ~g-TIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILI 1145 (1232)
.+ |+++|+.... ..+ ++++.++++.+++.+.... ...+||||||||++|||||+++|++|+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR-----------PVGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCC-----------chhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 75 9999996421 111 3457788988888654332 235799999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1146 LDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1146 LDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|||||++||+.+.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999998753 47899999999999987 999999999999999999998764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=357.14 Aligned_cols=211 Identities=21% Similarity=0.236 Sum_probs=177.1
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc--cCCccEEEECCeeCCCCChHhh-hcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV--EPAGGKILVDGIDISKLGLHDL-RSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~L-R~~ 1062 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 468999999963 46999999999999999999999999999999999994 7999999999999988877664 456
Q ss_pred EEEEccCCCCCcc-cHHhccCCC----CC------CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCC-CCChh
Q 000904 1063 FGIIPQDPTLFNG-TVRYNLDPL----SQ------HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS-NWSMG 1126 (1232)
Q Consensus 1063 i~iVpQdP~LF~g-TIr~NLdp~----~~------~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~-nLSgG 1126 (1232)
++|+||+|.+|.+ |+++|+... .. .+ ++++.++++.+++.+.... .... +||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~~LS~G 148 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLN----------RSVNEGFSGG 148 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcc----------cccccCcCHH
Confidence 9999999998876 788887421 00 11 2456777777777532211 1122 59999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh--cCeEEEEeCCEEEEecC
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD--CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~--~DrVlVL~~G~vvE~g~ 1203 (1232)
||||++|||||+++|++|||||||++||..+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999998754 47899999999999987 79999999999999999
Q ss_pred hhHHH
Q 000904 1204 PMKLM 1208 (1232)
Q Consensus 1204 p~~Ll 1208 (1232)
++++-
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 87553
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=364.60 Aligned_cols=213 Identities=30% Similarity=0.511 Sum_probs=188.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++.+|+. ...+|+||||+|++||.+|++||||||||||+++|.|+++|++|+|.++|.|...- ..+.|+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4788999999963 24699999999999999999999999999999999999999999999999998765 678899999
Q ss_pred EEccCCCCCcc-cHHhccCCCCC-------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPLSQ-------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~~~-------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|+||+|.+++. |+++||+.+.. ..++++.+.|+.++|.+.- +. ....||+|||||+.||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-~~----------~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-NK----------KVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-Cc----------chhhcCHHHHHHHHHHHH
Confidence 99999997754 99999975431 2356799999999998732 21 124799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-C-cEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFA-D-CTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~-~-~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|+.+|++|||||||++||+.+...+.+.|++..+ + +||++.||.++.+.+ ||+|++|++|+++.+|+++++.+.
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998655 4 699999999999988 999999999999999999998654
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=359.26 Aligned_cols=211 Identities=23% Similarity=0.315 Sum_probs=184.1
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC--------ccEEEECCeeCCCCChH
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA--------GGKILVDGIDISKLGLH 1057 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~--------~G~I~IDG~dI~~i~l~ 1057 (1232)
++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 689999999953 46999999999999999999999999999999999999998 99999999999888888
Q ss_pred hhhccEEEEccCCC-CCcccHHhccCCCC--------CC---CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCCh
Q 000904 1058 DLRSRFGIIPQDPT-LFNGTVRYNLDPLS--------QH---TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSM 1125 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~-LF~gTIr~NLdp~~--------~~---sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSg 1125 (1232)
.+|+.++|+||+|. +|..|+++|+.... .. .++.++++|+.+++.+.. .....+|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV-----------GRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 88889999999986 67889999985321 01 124567788887775432 334568999
Q ss_pred hHHHHHHHHHHHc---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEE
Q 000904 1126 GQRQLFCLGRALL---------RRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAI 1193 (1232)
Q Consensus 1126 GQRQrl~LARALL---------~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL 1193 (1232)
|||||++|||||+ .+|++|||||||++||..+.+.+.+.|++..+ ++|||+||||++.+.+ ||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999987533 6899999999999976 9999999
Q ss_pred eCCEEEEecChhHHHh
Q 000904 1194 SDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1194 ~~G~vvE~g~p~~Ll~ 1209 (1232)
++|++++.|+++++++
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999999875
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=358.04 Aligned_cols=222 Identities=23% Similarity=0.343 Sum_probs=186.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC---ccEEEECCeeCCCC-----Ch
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA---GGKILVDGIDISKL-----GL 1056 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i-----~l 1056 (1232)
-++++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|+ +|+|.+||.++... ..
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999953 46999999999999999999999999999999999999986 49999999998754 24
Q ss_pred HhhhccEEEEccCCCCCc-ccHHhccCCCC---------------CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCC
Q 000904 1057 HDLRSRFGIIPQDPTLFN-GTVRYNLDPLS---------------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120 (1232)
Q Consensus 1057 ~~LR~~i~iVpQdP~LF~-gTIr~NLdp~~---------------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G 1120 (1232)
..+|++++|+||+|.+|. .|+++|+.... ...++++.++++..++.+.... .+
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence 567889999999998887 59999985210 1123457788888888654433 34
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
.+||+|||||++||||++.+|++|||||||++||.++.+.+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 5799999999999999999999999999999999999999999998754 37899999999998766 99999999999
Q ss_pred EEEecChhHHHhhcCCHHHHHHHHH
Q 000904 1198 LAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1198 vvE~g~p~~Ll~~~~~~f~~l~~~~ 1222 (1232)
+++.|+++++ . +....+++...
T Consensus 231 i~~~g~~~~~-~--~~~~~~~~~~~ 252 (262)
T PRK09984 231 VFYDGSSQQF-D--NERFDHLYRSI 252 (262)
T ss_pred EEEeCCHHHh-c--cHHHHHHHhhh
Confidence 9999999996 2 23455554443
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=355.99 Aligned_cols=201 Identities=25% Similarity=0.303 Sum_probs=173.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +.+++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 689999999953 4699999999999999999999999999999999999999999999999998642 346999
Q ss_pred EccCCCCCc-ccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFN-GTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|. .|+++|+... .... ++++.++++.+++.+.... .+.+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999886 6999998632 1112 3457788888888654433 3458999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEe--CCEEEEecCh
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAIS--DGKLAEYDEP 1204 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~--~G~vvE~g~p 1204 (1232)
+++|++|||||||++||+.+...+.+.|++.. .++|||+|||+++.+.+ ||+|++|+ +|++++.+++
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999998752 37899999999999877 99999998 5999998754
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=353.19 Aligned_cols=465 Identities=22% Similarity=0.240 Sum_probs=309.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCC-----HHHHHHHHHhhHHHhhhhhh
Q 000904 706 RLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTP-----LGRVLSRVSSDLSIVDLDVP 780 (1232)
Q Consensus 706 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~-----~G~ilnR~s~D~~~vd~~~~ 780 (1232)
..+.+|..++.+.......+.++...+..+....+-+.++++.++..-.|+.... +...=+|+.+|+...-....
T Consensus 87 ~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~ 166 (604)
T COG4178 87 QQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTL 166 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHH
Confidence 3456677777777777888888888888888888888888888877633332211 12234677888765543222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 000904 781 FSLIFAVGATTNAYSNLGVLAVVTW-------------------QVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKS 841 (1232)
Q Consensus 781 ~~l~~~~~~~~~~l~~l~v~~~~~~-------------------~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s 841 (1232)
.-...++..++++++-.+++.-.+. .+++.++-..++...+.+...+..-+-.+.++..|.
T Consensus 167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~ 246 (604)
T COG4178 167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY 246 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 2222333444444443333331111 111111111222234455555555555556666654
Q ss_pred HHHHHHHHHHhhhHHHhhcchHHH---HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000904 842 LVANHLAESIAGAMTIRAFEEEDR---FFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTF 918 (1232)
Q Consensus 842 ~l~~~~~E~l~g~~tIraf~~~~~---f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~ 918 (1232)
.+.. +.| ....|..|+.|+. ..++....+..+.+..........|.......++.++.... .+-....|.+
T Consensus 247 ~Lvr-v~e---naE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li--~ap~~f~g~i 320 (604)
T COG4178 247 SLVR-VRE---NAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILI--AAPRYFSGQI 320 (604)
T ss_pred HHHH-HHh---hHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHh--ccHhhhcCcC
Confidence 4432 223 3445556655543 33333333333222222222222222222222222111111 1111236889
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CCCCCcccCCCCCCCCCCCcceEEEEeeE
Q 000904 919 TPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHV------PSEAPEVVEDNRPPPNWPVVGKVDICDLQ 992 (1232)
Q Consensus 919 ~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~------~~e~~~~~~~~~~~~~wp~~G~I~~~nvs 992 (1232)
+.|.+..+.+-..++...+.|++.++..+.+......|+.++... +.+.+.... .+-...-.....|+++|++
T Consensus 321 ~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~ 399 (604)
T COG4178 321 TFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLS 399 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeee
Confidence 999888888888889999999999999999999999999887631 222111100 0000000013679999999
Q ss_pred eEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCC
Q 000904 993 IRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTL 1072 (1232)
Q Consensus 993 ~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~L 1072 (1232)
+.-+++ ...++++|+++++||.+-|.|+||||||||+++|.|+.+-.+|+|.+-. -+++-++||.|.+
T Consensus 400 l~~p~~-~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~ 467 (604)
T COG4178 400 LRTPDG-QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYL 467 (604)
T ss_pred EECCCC-CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCC
Confidence 987554 4789999999999999999999999999999999999999999987752 1468999999999
Q ss_pred CcccHHhccC-CCC--CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 000904 1073 FNGTVRYNLD-PLS--QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEA 1149 (1232)
Q Consensus 1073 F~gTIr~NLd-p~~--~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEa 1149 (1232)
-.||+|+-+. |.. .++|+|+.++|.+|||.+.+.++.+ .+. -..-||+|||||+++||.|++||++++||||
T Consensus 468 p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEA 542 (604)
T COG4178 468 PQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-EDR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542 (604)
T ss_pred CCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-cCc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecc
Confidence 9999999985 433 3899999999999999999988643 222 3457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEe
Q 000904 1150 TASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAIS 1194 (1232)
Q Consensus 1150 Ts~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~ 1194 (1232)
||+||.+++..+.+.++++.+++|||.|+||.....-.++.+-++
T Consensus 543 TsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 543 TSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 999999999999999999999999999999987776677766554
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=355.79 Aligned_cols=221 Identities=24% Similarity=0.375 Sum_probs=184.0
Q ss_pred EEEEeeEeEecCC-------CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh--
Q 000904 986 VDICDLQIRYRPD-------SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL-- 1056 (1232)
Q Consensus 986 I~~~nvs~~Y~~~-------~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-- 1056 (1232)
|+++|++++|+.+ .+++++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 7899999999631 3579999999999999999999999999999999999999999999999999988765
Q ss_pred -HhhhccEEEEccCCC--CC-cccHHhccCC-C---CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1057 -HDLRSRFGIIPQDPT--LF-NGTVRYNLDP-L---SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1057 -~~LR~~i~iVpQdP~--LF-~gTIr~NLdp-~---~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
..+|++++|+||+|. ++ ..|+++|+.. . ... .++++.++++..++... .....+.+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~LS 153 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQLS 153 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCccCC
Confidence 346889999999983 43 4689988742 1 111 12346667776665421 2233456899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~ 1201 (1232)
+|||||++|||||+++|+||||||||++||.++...+.+.|++..+ ++|+|+|||+++.+.+ ||+|++|++|++++.
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 9999999999999999999999999999999999999999987532 7899999999999986 999999999999999
Q ss_pred cChhHHHhhcCCHHHH
Q 000904 1202 DEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1202 g~p~~Ll~~~~~~f~~ 1217 (1232)
|+++++... ++.|..
T Consensus 234 g~~~~~~~~-~~~~~~ 248 (268)
T PRK10419 234 QPVGDKLTF-SSPAGR 248 (268)
T ss_pred CChhhccCC-CCHHHH
Confidence 999999864 454443
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=345.43 Aligned_cols=204 Identities=27% Similarity=0.391 Sum_probs=178.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.... +++++|
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 468999999963 46999999999999999999999999999999999999999999999999876422 357999
Q ss_pred EccCCCCCc-ccHHhccCCC---CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1066 IPQDPTLFN-GTVRYNLDPL---SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~---~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
+||+|.+|. .|+++|+... ...+++++.++++..++.+..... ..+||+|||||++||||++++|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999998876 6999998631 233567888999999987654433 3479999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
++|+|||||++||.++.+.+.+.|++.. .++|+|++||+++.+.+ ||+|++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999998753 37899999999999876 99999999999999999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=331.24 Aligned_cols=215 Identities=24% Similarity=0.399 Sum_probs=185.0
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i~ 1064 (1232)
++++|++..|.+ ..+|+||||++++||.++++||||+|||||+++|+|+.+|.+|+|.++|.||...+.++. |..|+
T Consensus 4 L~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 4 LEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred eeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 789999999975 469999999999999999999999999999999999999999999999999999998876 77899
Q ss_pred EEccCCCCCc-ccHHhccCCCCC------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1065 IIPQDPTLFN-GTVRYNLDPLSQ------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp~~~------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
||||.-.+|. -||.|||..... ..+..+.++.+.+ .-|.......+.+|||||||.++|||||
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lF----------P~Lker~~~~aG~LSGGEQQMLAiaRAL 151 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELF----------PRLKERRNQRAGTLSGGEQQMLAIARAL 151 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHC----------hhHHHHhcCcccCCChHHHHHHHHHHHH
Confidence 9999999995 599999963211 1111133333332 2344444556779999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcC
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~ 1212 (1232)
+.+||+|+|||||.+|-+.--+.|.++|++..+ +.||+.|-++.....+ +||.+||++|+|+..|++++|.++++
T Consensus 152 m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 152 MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred hcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 999999999999999999999999999998653 5599999999999987 99999999999999999999998753
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=332.17 Aligned_cols=171 Identities=42% Similarity=0.723 Sum_probs=160.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+...+.+++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++.+.+...+|++++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 46899999996433469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000904 1066 IPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV 1145 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILI 1145 (1232)
+||+|.+|+.|+++|+ ||+|||||++||||++++|++|+
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999887 99999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCE
Q 000904 1146 LDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGK 1197 (1232)
Q Consensus 1146 LDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~ 1197 (1232)
|||||++||.++.+.+.+.|++..+++|+|++||+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998766789999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=351.14 Aligned_cols=221 Identities=21% Similarity=0.345 Sum_probs=182.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCee-----CCCCChHh-
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGID-----ISKLGLHD- 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~d-----I~~i~l~~- 1058 (1232)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +..++..+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999988 77666543
Q ss_pred ---hhccEEEEccCCC--C-CcccHHhccC----CCCC----CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1059 ---LRSRFGIIPQDPT--L-FNGTVRYNLD----PLSQ----HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1059 ---LR~~i~iVpQdP~--L-F~gTIr~NLd----p~~~----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
+++.++|+||+|. + +..|+.+|+. .+.. ..++++.+.++..++.+ +.....+.+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~LS 150 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAFS 150 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhcC
Confidence 3467999999985 2 3457777763 1111 12345667777776642 12233456899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~ 1201 (1232)
||||||++|||||+++|++|+|||||++||..+.+.+.+.|++.. .+.|+|+|||+++.+.+ ||++++|++|++++.
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998753 37899999999999986 999999999999999
Q ss_pred cChhHHHhhcCCHHHH
Q 000904 1202 DEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1202 g~p~~Ll~~~~~~f~~ 1217 (1232)
|+++++..++...|.+
T Consensus 231 ~~~~~~~~~~~~~~~~ 246 (253)
T TIGR02323 231 GLTDQVLDDPQHPYTQ 246 (253)
T ss_pred CCHHHHhcCCCCHHHH
Confidence 9999998765555543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=347.46 Aligned_cols=202 Identities=26% Similarity=0.354 Sum_probs=174.8
Q ss_pred EEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH---hhh
Q 000904 986 VDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH---DLR 1060 (1232)
Q Consensus 986 I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR 1060 (1232)
++++|++++|+++ .+.+|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 6899999999643 25699999999999999999999999999999999999999999999999999877643 467
Q ss_pred ccEEEEccCCCCCc-ccHHhccCCCC----CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1061 SRFGIIPQDPTLFN-GTVRYNLDPLS----QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1061 ~~i~iVpQdP~LF~-gTIr~NLdp~~----~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
+.++|+||+|.+|. .|+.+|+.... ..+ ++++.++++++++.+.....| .+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999887 69999996321 122 235677888888766555443 47999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEE
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKL 1198 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~v 1198 (1232)
+||||++++|++|+|||||++||.++.+.+.+.|++.. .++|+|+||||++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999998754 37999999999997766999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=369.19 Aligned_cols=211 Identities=26% Similarity=0.363 Sum_probs=180.6
Q ss_pred eeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC----hHhhhccEEE
Q 000904 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG----LHDLRSRFGI 1065 (1232)
Q Consensus 990 nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~----l~~LR~~i~i 1065 (1232)
|++++|+. . .+ |+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ....|++++|
T Consensus 4 ~l~~~~~~--~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGD--F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECC--E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 78999953 2 34 999999999999999999999999999999999999999999999986542 3456789999
Q ss_pred EccCCCCCcc-cHHhccCCC-CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1066 IPQDPTLFNG-TVRYNLDPL-SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~-~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
+||+|.+|.+ |+++|+... .... ++++.++++..++.+.... .+.+||||||||++|||||++
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGR-----------LPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHHc
Confidence 9999999975 999999632 1111 2347788888877654433 345899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHH
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f 1215 (1232)
+|++|+|||||++||..+.+.+.+.|++..+ ++|+|+|||+++.+.+ ||+|++|++|++++.|+|++++.++...|
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 9999999999999999999999999987543 6899999999999877 99999999999999999999998776555
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=331.49 Aligned_cols=170 Identities=33% Similarity=0.566 Sum_probs=156.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ .++|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 468999999963 35999999999999999999999999999999999999999999999999998765 677889999
Q ss_pred EccCCCCCcc-cHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 000904 1066 IPQDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRIL 1144 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kIL 1144 (1232)
+||+|.+|.+ |+++|+. ||+|||||++|||||+++|++|
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999998876 9998863 9999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEE
Q 000904 1145 VLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKL 1198 (1232)
Q Consensus 1145 ILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~v 1198 (1232)
+|||||++||..+.+.+.+.|++.. ++.|+|++||+.+.+.+ ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999998753 36899999999999885 899999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=331.98 Aligned_cols=172 Identities=35% Similarity=0.517 Sum_probs=158.0
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC--hHhhhccE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG--LHDLRSRF 1063 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~--l~~LR~~i 1063 (1232)
|+++|++++|+. +++++|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++++.+ ....++.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 468999999953 46999999999999999999999999999999999999999999999999998876 56778999
Q ss_pred EEEccCCCCCc-ccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
+|+||+|.+|. .|+++|+... ||+|||||++|||||+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 99999999885 4999998632 99999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1143 ILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
+++|||||++||..+.+.+.+.|++..+ ++|+|++||+++.+.+ ||++++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999987543 5899999999999986 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=353.55 Aligned_cols=208 Identities=24% Similarity=0.347 Sum_probs=175.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i 1063 (1232)
.++++|++++|++ .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .. ++++
T Consensus 6 ~l~~~~l~~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRN-GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecC-CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceE
Confidence 4899999999963 3469999999999999999999999999999999999999999999999998752 23 3469
Q ss_pred EEEccCCCC---CcccHHhccCCC--------C---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1064 GIIPQDPTL---FNGTVRYNLDPL--------S---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1064 ~iVpQdP~L---F~gTIr~NLdp~--------~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
+|+||+|.+ +..++++|+... . ...++++.++++.+++.+.... ...+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-----------QIGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHH
Confidence 999999965 455788887421 0 1123456788888888654332 23579999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
|++|||||+++|+||+|||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||+++.+ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999998753 37899999999999876 8999766 8999999999998
Q ss_pred Hh
Q 000904 1208 MK 1209 (1232)
Q Consensus 1208 l~ 1209 (1232)
.+
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 64
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=347.35 Aligned_cols=208 Identities=27% Similarity=0.404 Sum_probs=179.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +.+++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999963 4699999999999999999999999999999999999999999999987 35799
Q ss_pred EEccCCCCCc---ccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1065 IIPQDPTLFN---GTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1065 iVpQdP~LF~---gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
|+||+|.++. .|+++|+......+++++.++++.+++.+..... ...||||||||++||||++++|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998764 4888887533334577899999999987665432 3579999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHHHHH
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l 1218 (1232)
++|+|||||++||..+...+.+.|++..+ ++|||+|||+++.+.+ ||+|++|++ ++++.|+++++.++ ..|.++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~--~~~~~~ 216 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH--PEFISM 216 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC--HHHHHH
Confidence 99999999999999999999999987532 7899999999999976 999999965 79999999998753 345544
Q ss_pred H
Q 000904 1219 V 1219 (1232)
Q Consensus 1219 ~ 1219 (1232)
.
T Consensus 217 ~ 217 (251)
T PRK09544 217 F 217 (251)
T ss_pred h
Confidence 3
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=367.17 Aligned_cols=227 Identities=23% Similarity=0.380 Sum_probs=192.0
Q ss_pred eEEEEeeEeEecCCCC--ccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC----ccEEEECCeeCCCCChHh
Q 000904 985 KVDICDLQIRYRPDSP--LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA----GGKILVDGIDISKLGLHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~--~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~----~G~I~IDG~dI~~i~l~~ 1058 (1232)
-++++|+++.|..... .+++||||+|.+||.+||||+|||||||++++|.|+.++. +|+|.+||.|+..++-+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999964432 5999999999999999999999999999999999999988 899999999999988765
Q ss_pred h---h-ccEEEEccCCC-CCcc--cHHhccCC----C----CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCC
Q 000904 1059 L---R-SRFGIIPQDPT-LFNG--TVRYNLDP----L----SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNW 1123 (1232)
Q Consensus 1059 L---R-~~i~iVpQdP~-LF~g--TIr~NLdp----~----~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nL 1123 (1232)
+ | ++|++|||||. .++. ||.+-+.- - .+...+++.+.|+++++.+-... ..-+++|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 5 3 67999999995 5544 55444321 0 11134567888999988765443 1235789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 000904 1124 SMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1124 SgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE 1200 (1232)
|||||||+.||+||+.+|++||+||||.+||..|.+.|.+.|++.. .+.++|+||||+..+.+ ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998743 58899999999999988 99999999999999
Q ss_pred ecChhHHHhhcCCHHHHHHH
Q 000904 1201 YDEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1201 ~g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
.|++++++.++...|.+..-
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll 255 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLL 255 (539)
T ss_pred ecCHHHHHhccCCcccHHHH
Confidence 99999999998877765543
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=343.52 Aligned_cols=203 Identities=25% Similarity=0.355 Sum_probs=168.8
Q ss_pred EEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc---CCccEEEECCeeCCCCChHhhh
Q 000904 986 VDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE---PAGGKILVDGIDISKLGLHDLR 1060 (1232)
Q Consensus 986 I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e---p~~G~I~IDG~dI~~i~l~~LR 1060 (1232)
+.|+||+++|... .+++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. ..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~---~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh---HHhc
Confidence 5689999999654 3679999999999999999999999999999999999999 999999999998853 4678
Q ss_pred ccEEEEccCCCCCcc-cHHhccCCC---C--CCCH-----HHHHH-HHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1061 SRFGIIPQDPTLFNG-TVRYNLDPL---S--QHTD-----QEIWE-VLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1061 ~~i~iVpQdP~LF~g-TIr~NLdp~---~--~~sd-----~eI~~-aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
++++|+||+|.+|.+ |+++|+... . ...+ +.+.+ .|+.+++.+ .......+||+|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-----------IGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-----------hhcccccCcCHHHH
Confidence 899999999999987 999999631 1 1111 11222 444444432 22334568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCh-hhhhh-cCeEEEEeCCEEEEec
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRI-PTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl-~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
||++|||||+++|++|+|||||++||..+...+.+.|++.. .+.|+|++||++ +.+.+ ||+|++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998753 478999999998 45555 9999999999999865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=340.78 Aligned_cols=197 Identities=25% Similarity=0.362 Sum_probs=168.3
Q ss_pred eeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC----ChHhhhccEEE
Q 000904 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL----GLHDLRSRFGI 1065 (1232)
Q Consensus 990 nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~~LR~~i~i 1065 (1232)
|++++|+. ..+ |+||+|++ |.+||+|+||||||||+++|.|+++|++|+|.+||.++... +....|++++|
T Consensus 5 ~l~~~~~~--~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPD--FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCC--eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 89999964 234 99999999 99999999999999999999999999999999999998643 23456889999
Q ss_pred EccCCCCCc-ccHHhccCCCC-CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1066 IPQDPTLFN-GTVRYNLDPLS-QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~~-~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
+||+|.+|. .|+++|+.... .+ .++++.++++.+++.+... ..+.+||||||||++||||+++
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-----------RYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-----------cCcccCCHHHHHHHHHHHHHhc
Confidence 999999885 59999986321 11 2345777888887755433 2346899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
+|++|+|||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.+ ||++++|++|++++.|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999987532 7899999999999976 9999999999998865
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=317.75 Aligned_cols=212 Identities=27% Similarity=0.410 Sum_probs=185.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
+++++++.+|++ ...+++||||+++.||.+||.|+|||||||+++.|..++.|++|+|+|||.|+.+.+ ...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcce
Confidence 678899999975 334899999999999999999999999999999999999999999999999998865 567899999
Q ss_pred EccCCCCC-cccHHhccCCCCC---CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLF-NGTVRYNLDPLSQ---HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF-~gTIr~NLdp~~~---~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
++-+--++ .-|+|+||..|+. .+ ..++.+.-+..++.+...+.- .+||-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv-----------~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRV-----------GEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHH-----------hhhchhhHHHHHHHHHH
Confidence 99666666 5599999976652 22 345666667777777665542 36999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFA-DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~-~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
.++|+|+|||||||+||..+...+++.|++... +++||+-||.++.+.. ||+|+++.+|+++..|+++++.++
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999999998654 8999999999999996 999999999999999999999765
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=334.56 Aligned_cols=185 Identities=24% Similarity=0.303 Sum_probs=162.0
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcc--ccCCccEEEECCeeCCCCChHhh-hcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL--VEPAGGKILVDGIDISKLGLHDL-RSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl--~ep~~G~I~IDG~dI~~i~l~~L-R~~ 1062 (1232)
++++|++++|+. .++++|+||+|++||.+||+|+||||||||+++|.|+ ++|++|+|.+||.++.+.+..+. |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 468999999963 4699999999999999999999999999999999999 58999999999999998876554 556
Q ss_pred EEEEccCCCCCcc-cHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1063 FGIIPQDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1063 i~iVpQdP~LF~g-TIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
++|+||+|.+|.+ |+++|+ .. .+.+||+|||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------~~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------RY-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------hh-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999998875 444443 00 12479999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh--hcCeEEEEeCCEEEEecChhHHH
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVM--DCTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~--~~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
+||+|||||++||..+...+.+.|++.. +++|+|++||+++.+. -||++++|++|++++.| +.++.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999999999998753 3789999999999998 58999999999999999 56564
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=334.87 Aligned_cols=190 Identities=24% Similarity=0.306 Sum_probs=161.0
Q ss_pred eEEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc---CCccEEEECCeeCCCCChHhh
Q 000904 985 KVDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE---PAGGKILVDGIDISKLGLHDL 1059 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e---p~~G~I~IDG~dI~~i~l~~L 1059 (1232)
.+.++|++|.|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999643 4579999999999999999999999999999999999999 89999999999998765 456
Q ss_pred hccEEEEccCCCCCc-ccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc
Q 000904 1060 RSRFGIIPQDPTLFN-GTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL 1138 (1232)
Q Consensus 1060 R~~i~iVpQdP~LF~-gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL 1138 (1232)
|++++|+||++.+|. .|+++|+..... +. ..+....||+|||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------~~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR---------CK------------------GNEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh---------hc------------------cccchhhCCHHHHHHHHHHHHHh
Confidence 889999999998886 599999863210 00 12234579999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEe-cChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVA-HRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1139 ~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IA-Hrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
++|++|+|||||++||.++.+.+.+.|++..+ +.|+|+++ |+.+.+.+ ||++++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999997543 46766655 55667655 9999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=345.25 Aligned_cols=210 Identities=20% Similarity=0.219 Sum_probs=177.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcc--ccCCccEEEECCeeCCCCChHhhhc-
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL--VEPAGGKILVDGIDISKLGLHDLRS- 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl--~ep~~G~I~IDG~dI~~i~l~~LR~- 1061 (1232)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++..++....++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 3899999999963 3699999999999999999999999999999999998 6899999999999999887666554
Q ss_pred cEEEEccCCCCCcc-cHHhccCCC-C---------CCC----HHHHHHHHHHcCCcH-HHHhhccCCcccccCCCC-CCC
Q 000904 1062 RFGIIPQDPTLFNG-TVRYNLDPL-S---------QHT----DQEIWEVLAKCHLGE-AVREKENGLDSLVVEDGS-NWS 1124 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~g-TIr~NLdp~-~---------~~s----d~eI~~aL~~~~L~~-~i~~~p~gLdt~v~e~G~-nLS 1124 (1232)
.++++||+|.+|.+ |+++|+... . +.+ .+++.++|+.+++.+ .... ... .||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~~LS 153 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSR-----------NVNEGFS 153 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcc-----------ccccCCC
Confidence 58999999998876 788886421 1 001 234567788777752 2222 222 599
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh--cCeEEEEeCCEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD--CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~--~DrVlVL~~G~vvE~ 1201 (1232)
||||||++|||||+++|+||||||||++||.++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999998753 47899999999999976 799999999999999
Q ss_pred cChhHH
Q 000904 1202 DEPMKL 1207 (1232)
Q Consensus 1202 g~p~~L 1207 (1232)
|+|+.+
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 999844
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=341.48 Aligned_cols=206 Identities=22% Similarity=0.315 Sum_probs=170.9
Q ss_pred cceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC----CccEEEECCeeCCCCChHhhhccEEEEccCCC-CCc--
Q 000904 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP----AGGKILVDGIDISKLGLHDLRSRFGIIPQDPT-LFN-- 1074 (1232)
Q Consensus 1002 vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep----~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~-LF~-- 1074 (1232)
+|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... ...+++++|+||+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999998764 222468999999995 343
Q ss_pred ccHHhccCC----CCC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000904 1075 GTVRYNLDP----LSQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLD 1147 (1232)
Q Consensus 1075 gTIr~NLdp----~~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILD 1147 (1232)
-|+.+|+.. .+. ..++++.++++.+++.+. +......+.+||+|||||++||||++++|+||+||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 488877631 111 123457888998888631 11122344689999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHHHH
Q 000904 1148 EATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1148 EaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~ 1217 (1232)
|||++||..+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|++++++..+...|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999987543 7899999999999976 9999999999999999999998765555544
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=333.08 Aligned_cols=182 Identities=25% Similarity=0.405 Sum_probs=160.3
Q ss_pred eEEEEeeEeEecCC----CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc--cCCccEEEECCeeCCCCChHh
Q 000904 985 KVDICDLQIRYRPD----SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV--EPAGGKILVDGIDISKLGLHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~----~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~ 1058 (1232)
.++++|++++|+.+ ..++|+|+||+|++||.++|+|+||||||||+++|.|++ +|++|+|.+||.++.. .+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999642 256999999999999999999999999999999999999 9999999999999875 36
Q ss_pred hhccEEEEccCCCCCc-ccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1059 LRSRFGIIPQDPTLFN-GTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~-gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
.|++++|+||+|.+|. .|+++|+... . .. . .||+|||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~---------~---~~-------------~--------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFA---------A---KL-------------R--------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHH---------H---Hh-------------c--------cCCHHHHHHHHHHHHH
Confidence 7889999999999886 4999887410 0 00 0 6999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhh-cCeEEEEeCCEEEEec
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIP-TVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~-ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
+++|++|+|||||++||..+.+.+.+.|++.. +++|+|+|||+++ .+.+ ||+|++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998754 4789999999997 5654 9999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=338.40 Aligned_cols=193 Identities=24% Similarity=0.340 Sum_probs=164.6
Q ss_pred EEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh----HhhhccE
Q 000904 988 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL----HDLRSRF 1063 (1232)
Q Consensus 988 ~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l----~~LR~~i 1063 (1232)
++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+.. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 3689999963 469999999999999999999999999999999999999999999999999765542 2457789
Q ss_pred EEEccCCCCCc-ccHHhccCCC---CC----CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPL---SQ----HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~---~~----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
+|++|+|.+|. .|+++|+... .. ..++++.++++..++.+.... ...+||+|||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-----------KIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999986 6999998631 11 124567788888887554332 23579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCeEEEE
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMDCTMVLAI 1193 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL 1193 (1232)
||+++|++|||||||++||.++.+.+.+.|++.. .+.|+|++||+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999998753 378999999999988779999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=329.37 Aligned_cols=177 Identities=31% Similarity=0.493 Sum_probs=160.1
Q ss_pred EEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEE
Q 000904 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGII 1066 (1232)
Q Consensus 987 ~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iV 1066 (1232)
+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+..+++++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999963 4699999999999999999999999999999999999999999999999999988888888899999
Q ss_pred ccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000904 1067 PQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVL 1146 (1232)
Q Consensus 1067 pQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILIL 1146 (1232)
|| +++.+++.+.... .+.+||+|||||++||||++++|++++|
T Consensus 79 ~q--------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 6777888765433 3458999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1147 DEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1147 DEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
||||++||.++.+.+.+.|++..+ ++|+|++||+++.+.+ ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999987544 6899999999999866 9999999999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=329.59 Aligned_cols=172 Identities=27% Similarity=0.485 Sum_probs=155.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh-HhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL-HDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-~~LR~~i 1063 (1232)
.++++|++++| +|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 38999999998 8999999999999999999999999999999999999999999999999988864 4567899
Q ss_pred EEEccCC----CCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1064 GIIPQDP----TLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1064 ~iVpQdP----~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
+|+||+| .++..|+++|+..... ||+|||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999996 3445799999853110 99999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEE
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKL 1198 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~v 1198 (1232)
+|++|+|||||++||.++.+.+.+.|++.. +++|+|++||+++.+.+ ||+|++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999998753 47899999999999988 999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=330.36 Aligned_cols=214 Identities=25% Similarity=0.396 Sum_probs=185.9
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i~ 1064 (1232)
++.+|++.+|. .-.+++||||++++||.+|++|||||||||+++++.|+|+|++|+|.++|.||..++.+.. |..|+
T Consensus 5 L~v~~l~k~FG--Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFG--GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecC--CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 57899999996 3469999999999999999999999999999999999999999999999999999998886 56688
Q ss_pred EEccCCCCCcc-cHHhccCCCCC-------------------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPLSQ-------------------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~~~-------------------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
--+|.+.+|.+ ||-||+..... ...++..+.|+.++|.+.... ...+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~-----------~A~~Ls 151 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR-----------PAGNLS 151 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcc-----------hhhcCC
Confidence 89999999965 99999842100 112445677777777665433 345899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~ 1201 (1232)
+||++||-|||||..+|++|+||||.|++.+.-...+.+.|++..+ +.|+++|-||++.|++ ||||+||+.|+++..
T Consensus 152 yG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred hhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc
Confidence 9999999999999999999999999999999888888888887653 4899999999999999 999999999999999
Q ss_pred cChhHHHhhcC
Q 000904 1202 DEPMKLMKREG 1212 (1232)
Q Consensus 1202 g~p~~Ll~~~~ 1212 (1232)
|+|++..++|.
T Consensus 232 G~P~eV~~dp~ 242 (250)
T COG0411 232 GTPEEVRNNPR 242 (250)
T ss_pred CCHHHHhcCHH
Confidence 99999998763
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=322.31 Aligned_cols=164 Identities=27% Similarity=0.356 Sum_probs=149.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+.+ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4689999999633 46999999999999999999999999999999999999999999999982 68999
Q ss_pred EccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000904 1066 IPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV 1145 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILI 1145 (1232)
+||+|.++++|+++|+... .+.+||+|||||++||||++++|++|+
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999998631 235899999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCE
Q 000904 1146 LDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGK 1197 (1232)
Q Consensus 1146 LDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~ 1197 (1232)
|||||++||.++.+.+.+.|++. ++|+|++|||++....||+|++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999975 689999999999887799999998764
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=342.65 Aligned_cols=206 Identities=21% Similarity=0.295 Sum_probs=176.1
Q ss_pred EEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEE
Q 000904 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGII 1066 (1232)
Q Consensus 987 ~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iV 1066 (1232)
+++|++++ .+|+|+||+|++||.+||+|+||||||||+++|.|+++ .+|+|.+||.++.+.+..++++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 46777774 27999999999999999999999999999999999986 499999999999988888888899999
Q ss_pred ccCCC-CCcccHHhccCCCCC--CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1067 PQDPT-LFNGTVRYNLDPLSQ--HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1067 pQdP~-LF~gTIr~NLdp~~~--~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
||+|. .+..|+++|+..... .+ ++++.++++.+++.+.... ....||+|||||++|||||++
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR-----------SVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhc
Confidence 99985 457799999874321 11 3456778888777543322 345799999999999999997
Q ss_pred -------CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1140 -------RSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1140 -------~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+|++|+|||||++||..+...+.+.|++.. .+.|||+|||+++.+.+ ||+|++|++|++++.|+++++.+.
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 223 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTP 223 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhCc
Confidence 679999999999999999999999998754 47899999999998766 999999999999999999998753
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=321.13 Aligned_cols=216 Identities=28% Similarity=0.443 Sum_probs=185.6
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hcc
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSR 1062 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~ 1062 (1232)
+.+..+|+..+|+ ..+|.+||||++++||.||+.||||+||||.+.++.|+++|++|+|.+||.||+.++++.. |..
T Consensus 3 ~~L~a~~l~K~y~--kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYK--KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhC--CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 4578899999996 3579999999999999999999999999999999999999999999999999999999875 667
Q ss_pred EEEEccCCCCCcc-cHHhccCCCCC---------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1063 FGIIPQDPTLFNG-TVRYNLDPLSQ---------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1063 i~iVpQdP~LF~g-TIr~NLdp~~~---------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
|||.||||.+|.+ ||++||...-+ ...+++.+.|+..++...-. ..+..||||||+|+-
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~-----------~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRD-----------SKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhc-----------CcccccccchHHHHH
Confidence 9999999999966 99999964221 12234556777777654332 235689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCh-hhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRI-PTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl-~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|||||..+|+.++||||.|++|+-+-..||+.|+... .|--|++.-|.. +|+.-|||.+++.+|+|...|+|+++.++
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999999999998754 356788888986 56666999999999999999999999987
Q ss_pred cC
Q 000904 1211 EG 1212 (1232)
Q Consensus 1211 ~~ 1212 (1232)
+.
T Consensus 230 ~~ 231 (243)
T COG1137 230 ED 231 (243)
T ss_pred hh
Confidence 53
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=331.84 Aligned_cols=198 Identities=23% Similarity=0.370 Sum_probs=172.7
Q ss_pred eEEEEeeEeEecCCC-------CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH
Q 000904 985 KVDICDLQIRYRPDS-------PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~-------~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~ 1057 (1232)
-++++|++..|.-.. -.+++||||+|++||.+||||+|||||||+.++|.||++|++|+|.++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 478899999985321 26899999999999999999999999999999999999999999999999987765
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
.+..++++.+.|+++|+.+..... .+++||||||||++|||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~r----------yPhelSGGQrQRi~IARAL 124 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYR----------YPHELSGGQRQRIGIARAL 124 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhc----------CCcccCchhhhhHHHHHHH
Confidence 122356799999999987754432 3468999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCH
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAE--FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSL 1214 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~ 1214 (1232)
+-+|+++|+|||||+||....+.|.+.+++. ..+-|.++||||++.++. ||||.||..|+|+|.|+.++++.++...
T Consensus 125 al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~Hp 204 (268)
T COG4608 125 ALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHP 204 (268)
T ss_pred hhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCH
Confidence 9999999999999999999999988888753 237899999999999998 9999999999999999999999998888
Q ss_pred HHHHHHH
Q 000904 1215 FGQLVRE 1221 (1232)
Q Consensus 1215 f~~l~~~ 1221 (1232)
|.+..-+
T Consensus 205 YTk~Ll~ 211 (268)
T COG4608 205 YTKALLS 211 (268)
T ss_pred HHHHHHH
Confidence 8665543
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=330.44 Aligned_cols=181 Identities=22% Similarity=0.323 Sum_probs=158.9
Q ss_pred eEEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc--cCCccEEEECCeeCCCCChHhhh
Q 000904 985 KVDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV--EPAGGKILVDGIDISKLGLHDLR 1060 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~LR 1060 (1232)
.++++|++++|+++ .+++|+|+||+|++||.++|+|+||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48999999999642 246999999999999999999999999999999999986 489999999999886 5678
Q ss_pred ccEEEEccCCCCCcc-cHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1061 SRFGIIPQDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1061 ~~i~iVpQdP~LF~g-TIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
++++|++|+|.+|.+ |+++|+... ..++ +||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~---------~~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS---------ALLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH---------HHHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999988875 999998520 0000 799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh-h-hhcCeEEEEeC-CEEEEec
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPT-V-MDCTMVLAISD-GKLAEYD 1202 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~t-i-~~~DrVlVL~~-G~vvE~g 1202 (1232)
+|++|+|||||++||.++...+.+.|++.. .++|+|+|||+++. + ..||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999998753 47899999999984 4 45999999999 9999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=339.63 Aligned_cols=210 Identities=20% Similarity=0.244 Sum_probs=168.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc--cCCccEEEECCeeCCCCChHhhh-cc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV--EPAGGKILVDGIDISKLGLHDLR-SR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~LR-~~ 1062 (1232)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 689999999963 46999999999999999999999999999999999995 69999999999999887766654 57
Q ss_pred EEEEccCCCCCcc-cHHhc-------cCCCCC---CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCC-CCCChh
Q 000904 1063 FGIIPQDPTLFNG-TVRYN-------LDPLSQ---HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDG-SNWSMG 1126 (1232)
Q Consensus 1063 i~iVpQdP~LF~g-TIr~N-------Ldp~~~---~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G-~nLSgG 1126 (1232)
++|++|+|.++.. |..++ +..... .. ++.+.+.++..++.+ ++.+ ... .+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~---~~~~~~LS~G 149 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE-------DLLT---RSVNVGFSGG 149 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCCh-------hhcc---cCCCCCCCHH
Confidence 9999999977654 33333 221111 01 122334444444421 1111 112 379999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh--cCeEEEEeCCEEEEecC
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD--CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~--~DrVlVL~~G~vvE~g~ 1203 (1232)
||||++||||++++|+||+|||||++||.++.+.+.+.|++.. .++|||+|||+++.+.. +|+|++|++|++++.|+
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 9999999999999999999999999999999999999988753 36899999999999987 79999999999999999
Q ss_pred hhHH
Q 000904 1204 PMKL 1207 (1232)
Q Consensus 1204 p~~L 1207 (1232)
++..
T Consensus 230 ~~~~ 233 (248)
T PRK09580 230 FTLV 233 (248)
T ss_pred HHHH
Confidence 8754
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=338.55 Aligned_cols=190 Identities=27% Similarity=0.401 Sum_probs=163.4
Q ss_pred ceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCc-ccHHhcc
Q 000904 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFN-GTVRYNL 1081 (1232)
Q Consensus 1003 L~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~-gTIr~NL 1081 (1232)
|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+|+||+|.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999887 5999998
Q ss_pred CCC-----CCCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCC
Q 000904 1082 DPL-----SQHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATAS 1152 (1232)
Q Consensus 1082 dp~-----~~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~ 1152 (1232)
... ...++ +++.++++.+++.+.... ...+||||||||++|||||+++|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-----------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 531 12222 246777888887654333 2357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1153 IDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1153 LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
||+.+.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|++.+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998753 37899999999999877 9999999999999999887763
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=372.93 Aligned_cols=213 Identities=25% Similarity=0.380 Sum_probs=184.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhh-ccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLR-SRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR-~~i 1063 (1232)
.++++|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+..+++ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 4999999999963 4699999999999999999999999999999999999999999999999999887776655 469
Q ss_pred EEEccCCCCCcc-cHHhccCCCCC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLSQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
+|+||+|.+|.+ |+++|+..... ..++++.++++.+++.+... ....+||||||||++|||||++
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD-----------SSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcccc-----------CChhhCCHHHHHHHHHHHHHHc
Confidence 999999988865 99999864221 12356778888887754322 2335799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+|++|||||||++||+.+.+.+.+.|++.. ++.|||+||||++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD 230 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH
Confidence 999999999999999999999999998753 47899999999999877 999999999999999999988653
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=308.59 Aligned_cols=217 Identities=29% Similarity=0.415 Sum_probs=188.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC----------
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL---------- 1054 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i---------- 1054 (1232)
.++++|+..+|.+. .||||||++-++|+.|.|+|.|||||||+++++.=+-.|++|+|.++|..|...
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 48899999999754 599999999999999999999999999999999999999999999999888532
Q ss_pred ---ChHhhhccEEEEccCCCCCcc-cHHhccC--CC---CCCCH---HHHHHHHHHcCCcHHHHhhccCCcccccCCCCC
Q 000904 1055 ---GLHDLRSRFGIIPQDPTLFNG-TVRYNLD--PL---SQHTD---QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSN 1122 (1232)
Q Consensus 1055 ---~l~~LR~~i~iVpQdP~LF~g-TIr~NLd--p~---~~~sd---~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~n 1122 (1232)
.++.+|+++++|+|+-.|.+. |+.+|.- |. +...+ +.....|.++|+.+....-| ..
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------AH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------cc
Confidence 266789999999999988854 9999973 42 22222 33456788888877655443 47
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 000904 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1123 LSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE 1200 (1232)
|||||+||++|||||..+|+++++|||||+||++--..+.+.+++.. .|+|+++|||.+.+.++ +.+|+.+.+|+|.|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 99999999999999999999999999999999999888888888754 48999999999999999 78999999999999
Q ss_pred ecChhHHHhhcCCH
Q 000904 1201 YDEPMKLMKREGSL 1214 (1232)
Q Consensus 1201 ~g~p~~Ll~~~~~~ 1214 (1232)
.|+|++++.+|.|.
T Consensus 233 ~G~P~qvf~nP~S~ 246 (256)
T COG4598 233 EGPPEQVFGNPQSP 246 (256)
T ss_pred cCChHHHhcCCCCH
Confidence 99999999998874
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=338.92 Aligned_cols=191 Identities=28% Similarity=0.362 Sum_probs=160.1
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEc-cCCCCC-cccH
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIP-QDPTLF-NGTV 1077 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVp-QdP~LF-~gTI 1077 (1232)
.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... ...+|++++|+| |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 346778999997 667665 5699
Q ss_pred HhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccC
Q 000904 1078 RYNLDPLS---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEAT 1150 (1232)
Q Consensus 1078 r~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaT 1150 (1232)
++|+.... ..+. +++.++++.+++.+.... ...+||+|||||++|||||+.+|++|+|||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDT-----------PVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99985311 1222 234566777666543322 23579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1151 ASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1151 s~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
++||.++.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999998753 36899999999999877 8999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=374.53 Aligned_cols=212 Identities=23% Similarity=0.334 Sum_probs=181.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC--CccEEEECCeeCCCCChHh-hhc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP--AGGKILVDGIDISKLGLHD-LRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep--~~G~I~IDG~dI~~i~l~~-LR~ 1061 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+..+ .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999953 4699999999999999999999999999999999999996 8999999999998877654 467
Q ss_pred cEEEEccCCCCCcc-cHHhccCCCC------CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1062 RFGIIPQDPTLFNG-TVRYNLDPLS------QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~g-TIr~NLdp~~------~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
+++|+||+|.+|.. |+++|+.... ..+ .+++.++++.+++.+.. .....+||||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqr 151 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP-----------ATPVGNLGLGQQQL 151 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCc-----------ccchhhCCHHHHHH
Confidence 89999999988864 9999996321 112 23466777777764322 22345799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
++|||||+++|+||||||||++||+++...+.+.|++.. ++.|||+||||++.+.+ ||+|++|++|++++.|+++++.
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999999998753 47899999999999987 9999999999999999998875
Q ss_pred h
Q 000904 1209 K 1209 (1232)
Q Consensus 1209 ~ 1209 (1232)
.
T Consensus 232 ~ 232 (506)
T PRK13549 232 E 232 (506)
T ss_pred H
Confidence 3
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=328.39 Aligned_cols=194 Identities=23% Similarity=0.328 Sum_probs=167.9
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ..+|++++|
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 468999999963 46999999999999999999999999999999999999999999999999987643 467889999
Q ss_pred EccCCCCC-cccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000904 1066 IPQDPTLF-NGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI 1143 (1232)
Q Consensus 1066 VpQdP~LF-~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kI 1143 (1232)
+||+|.++ ..|+++|+.... ...++++.++++..++.+.... ...+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR-----------PVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcC-----------chhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 679999996443 3467788899999998754322 2357999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEE
Q 000904 1144 LVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAI 1193 (1232)
Q Consensus 1144 LILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL 1193 (1232)
|||||||++||+.+.+.+.+.|++.. .++|+|+|||+...+.+ +|+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998643 47899999998776655 8898876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=329.78 Aligned_cols=194 Identities=24% Similarity=0.336 Sum_probs=168.1
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ...+++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 688999999963 46999999999999999999999999999999999999999999999999987654 456788999
Q ss_pred EccCCCCCc-ccHHhccCCCC----CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccC
Q 000904 1066 IPQDPTLFN-GTVRYNLDPLS----QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRR 1140 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~~----~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~ 1140 (1232)
++|++.++. .|+++|+.... ...++++.++++.+++.+.... ...+||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-----------PVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHHHHhcC
Confidence 999998875 69999985321 1345678889999998765432 2357999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhc-CeEEEE
Q 000904 1141 SRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMDC-TMVLAI 1193 (1232)
Q Consensus 1141 ~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~-DrVlVL 1193 (1232)
|++|+|||||++||.++.+.+.+.|++.. .++|+|++||+++.+..| +|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998753 478999999999999775 577776
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=375.25 Aligned_cols=212 Identities=21% Similarity=0.311 Sum_probs=181.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i 1063 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+.+.. |+++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999953 469999999999999999999999999999999999999999999999999988776554 4679
Q ss_pred EEEccCCCCCcc-cHHhccCCCC-------CC---C----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLS-------QH---T----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~-------~~---s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
+|+||+|.+|.+ |+++|+.... .. + ++++.++++.+++.+.. .....+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL-----------DEKVANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCc-----------ccchhhCCHHHH
Confidence 999999988765 9999986311 10 1 23466777777765322 223357999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
||++|||||+.+|+||||||||++||..+...+.+.|++.. .+.|||+||||++.+.+ ||+|++|++|++++.|++++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999999998743 47899999999999987 99999999999999999988
Q ss_pred HHh
Q 000904 1207 LMK 1209 (1232)
Q Consensus 1207 Ll~ 1209 (1232)
++.
T Consensus 232 ~~~ 234 (510)
T PRK09700 232 VSN 234 (510)
T ss_pred CCH
Confidence 754
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=372.41 Aligned_cols=212 Identities=21% Similarity=0.321 Sum_probs=180.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i 1063 (1232)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3899999999953 469999999999999999999999999999999999999999999999999976655443 5789
Q ss_pred EEEccCCCCCcc-cHHhccCCCC-------CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLS-------QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~-------~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
+|+||+|.+|.. |+++|+.... ..+ ++++.++++.+++.+.. .....+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-----------DKLVGELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc-----------cCchhhCCHHHHHHH
Confidence 999999988764 9999996421 112 23466777777765432 222357999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
+|||||+.+|++|+|||||++||+.+.+.+.+.|++.. .+.|||+||||++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 99999999999999999999999999999999998742 46899999999999977 89999999999999999887743
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=381.45 Aligned_cols=223 Identities=23% Similarity=0.336 Sum_probs=182.5
Q ss_pred eEEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCC----------
Q 000904 985 KVDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS---------- 1052 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~---------- 1052 (1232)
.|+++|++++|+.. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 59999999999632 236999999999999999999999999999999999999999999999998652
Q ss_pred CCCh---Hhhh-ccEEEEccCC--CCCc-ccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCccccc
Q 000904 1053 KLGL---HDLR-SRFGIIPQDP--TLFN-GTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVV 1117 (1232)
Q Consensus 1053 ~i~l---~~LR-~~i~iVpQdP--~LF~-gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~ 1117 (1232)
+.+. ..+| ++|+||+|+| .++. -||++|+... ...+ ++++.++|+.+++.+.- ....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~--------~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQ--------TILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChh--------hHHh
Confidence 2222 2344 5799999999 5665 5999998521 1112 24577888888885310 0112
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEe
Q 000904 1118 EDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAIS 1194 (1232)
Q Consensus 1118 e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~ 1194 (1232)
....+||||||||++|||||+.+|++|||||||++||..+.+.+.+.|++.. .++|||+||||++.+.+ ||||++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 2345899999999999999999999999999999999999999999998753 27899999999999977 99999999
Q ss_pred CCEEEEecChhHHHhhcCCHH
Q 000904 1195 DGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1195 ~G~vvE~g~p~~Ll~~~~~~f 1215 (1232)
+|++++.|+++++++.+...|
T Consensus 244 ~G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred CCeecccCCHHHhhcCCCChh
Confidence 999999999999987654333
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=313.48 Aligned_cols=159 Identities=32% Similarity=0.509 Sum_probs=147.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH-hhhccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH-DLRSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~-~LR~~i~ 1064 (1232)
++++|++++|+. .++++++||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|++++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 478999999963 3699999999999999999999999999999999999999999999999999888754 4677899
Q ss_pred EEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 000904 1065 IIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRIL 1144 (1232)
Q Consensus 1065 iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kIL 1144 (1232)
|+|| ||+|||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 9999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 000904 1145 VLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1145 ILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE 1200 (1232)
+|||||++||.++.+.+.+.|++.. ++.|+|++||+++.+.+ ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998753 47899999999998876 99999999999976
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=326.05 Aligned_cols=203 Identities=28% Similarity=0.376 Sum_probs=179.4
Q ss_pred cceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh----hccEEEEccCCCCCc-cc
Q 000904 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL----RSRFGIIPQDPTLFN-GT 1076 (1232)
Q Consensus 1002 vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L----R~~i~iVpQdP~LF~-gT 1076 (1232)
-++|+||+|+.||...|.|=||||||||++++.||+||++|+|++||.||..++..+| |+++++|+|.--||. -|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 4789999999999999999999999999999999999999999999999999997766 368999999998885 59
Q ss_pred HHhccCCCCC---C----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 000904 1077 VRYNLDPLSQ---H----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEA 1149 (1232)
Q Consensus 1077 Ir~NLdp~~~---~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEa 1149 (1232)
|.+|....-+ . ..+...++|+.+||.++-.+.|+ +||||+|||+.|||||..+|+||+||||
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~-----------eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN-----------ELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc-----------cccchHHHHHHHHHHHccCCCEEEecCc
Confidence 9999863211 1 23457889999999998877764 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHH
Q 000904 1150 TASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1150 Ts~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f 1215 (1232)
.|+||+--...+|+-|.+.- -.+|+++||||++.... -|||..|++|+|+..|+|+|++.+|.--|
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndY 260 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDY 260 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHH
Confidence 99999999999999876532 36899999999998776 89999999999999999999998875433
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=370.32 Aligned_cols=211 Identities=20% Similarity=0.219 Sum_probs=183.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+..++|+++++
T Consensus 4 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 889999999963 359999999999999999999999999999999999999999999999998877777778888999
Q ss_pred EccCCCC--C-------cccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1066 IPQDPTL--F-------NGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1066 VpQdP~L--F-------~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
+||+|.+ + ..|+++|+... ...++++.++++.+++.+..... ..+||||||||++||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~la~a 149 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALLDRR-----------FKYLSTGETRKTLLCQA 149 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhhhCC-----------cccCCHHHHHHHHHHHH
Confidence 9999753 2 35888887532 22345688889998886543332 34799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|+++|++|+|||||++||+++.+.+.+.|++.. .+.|||+||||++.+.+ ||+|++|++|++++.|++++++++
T Consensus 150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 999999999999999999999999999998753 36899999999999987 899999999999999999998764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=370.83 Aligned_cols=220 Identities=22% Similarity=0.368 Sum_probs=182.5
Q ss_pred eEEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCCChH
Q 000904 985 KVDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKLGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i~l~ 1057 (1232)
-++++|++++|+.+ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 24699999999999999999999999999999999999997 799999999999877654
Q ss_pred h---hh-ccEEEEccCCC--CCc-ccHHhccCC----CCCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCC
Q 000904 1058 D---LR-SRFGIIPQDPT--LFN-GTVRYNLDP----LSQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSN 1122 (1232)
Q Consensus 1058 ~---LR-~~i~iVpQdP~--LF~-gTIr~NLdp----~~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~n 1122 (1232)
+ .| ++++|+||+|. ++. -|+++|+.. .... .++++.++++.+++.+.... ......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--------~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKR--------LTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhhCCcc
Confidence 3 33 57999999985 443 488888741 1111 13567888998888642111 1112357
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEE
Q 000904 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLA 1199 (1232)
Q Consensus 1123 LSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv 1199 (1232)
||||||||++|||||+.+|++|+|||||++||+.+.+.+.+.|++.. .+.|||+||||++.+.+ ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998743 37899999999999876 9999999999999
Q ss_pred EecChhHHHhhcC
Q 000904 1200 EYDEPMKLMKREG 1212 (1232)
Q Consensus 1200 E~g~p~~Ll~~~~ 1212 (1232)
+.|+++++++.+.
T Consensus 237 ~~g~~~~~~~~~~ 249 (529)
T PRK15134 237 EQNRAATLFSAPT 249 (529)
T ss_pred EeCCHHHHhhCCC
Confidence 9999999986543
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=300.03 Aligned_cols=199 Identities=27% Similarity=0.440 Sum_probs=177.2
Q ss_pred eEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCC
Q 000904 993 IRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTL 1072 (1232)
Q Consensus 993 ~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~L 1072 (1232)
.+|.....++|+++||++++||.++|.||||||||||++.++-+..|++|.+++.|.|++.++...+|++++|+.|.|.|
T Consensus 9 ~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paL 88 (223)
T COG4619 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPAL 88 (223)
T ss_pred HHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccc
Confidence 35665666899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhccC-CCC----CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000904 1073 FNGTVRYNLD-PLS----QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLD 1147 (1232)
Q Consensus 1073 F~gTIr~NLd-p~~----~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILD 1147 (1232)
|.+||.+|+- |+. ..+.+...+.|+++++.+.+-.+ +..+||||||||++|+|-|---|+||+||
T Consensus 89 fg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k----------~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 89 FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTK----------NITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred cccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcc----------hhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 9999999985 432 23455667788888888776544 34689999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhh-hhhcCeEEEEeCCEEEEe
Q 000904 1148 EATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPT-VMDCTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1148 EaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~t-i~~~DrVlVL~~G~vvE~ 1201 (1232)
|+||+||..+.+.|.+.|.+.+ ++..++-||||.+. ++.+||++-+..|++-|.
T Consensus 159 E~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~~ 215 (223)
T COG4619 159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEM 215 (223)
T ss_pred CchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccccc
Confidence 9999999999999999998876 36799999999988 777999999999887543
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=308.25 Aligned_cols=213 Identities=23% Similarity=0.370 Sum_probs=185.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+.+|++++-. .+.+|+|+||+++|||.+||+||||||||||+++|.|-..|++|++.++|+|+++.+..++-++-++
T Consensus 2 i~a~nls~~~~--Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLA--GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEee--cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 67889988764 4569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCC-CcccHHhccC----CCCC---CCHHH--HHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1066 IPQDPTL-FNGTVRYNLD----PLSQ---HTDQE--IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1066 VpQdP~L-F~gTIr~NLd----p~~~---~sd~e--I~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
.||+..+ |.=|++|-+. |.+. ..+++ ..++|+++++..+-.+. =..||||||||+.|||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----------y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-----------YRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-----------hhhcCchHHHHHHHHH
Confidence 9999875 8889988764 4422 22444 67899999887665432 2369999999999999
Q ss_pred HHcc------CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1136 ALLR------RSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1136 ALL~------~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
+|.. .+++|+||||||+||......+.++.|+.. .++.|+.|=||++.... ||||++|.+||++..|+|++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 9975 346999999999999999999999988743 47899999999998876 899999999999999999999
Q ss_pred Hhhc
Q 000904 1208 MKRE 1211 (1232)
Q Consensus 1208 l~~~ 1211 (1232)
+.++
T Consensus 229 lt~E 232 (259)
T COG4559 229 LTDE 232 (259)
T ss_pred cCHH
Confidence 9763
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=326.00 Aligned_cols=195 Identities=22% Similarity=0.249 Sum_probs=167.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. +++++++||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998752 3456799
Q ss_pred EEccCCCCCcc-cHHhccCCC----CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPL----SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~----~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
|+||+|.++.+ |+++|+... +...++.+.++++..++.+.. + ....+||+|||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYE-------D----TLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhc-------c----CChhhCCHHHHHHHHHHHHHhc
Confidence 99999998876 999998521 222345567788888775432 2 2235799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhh-cCeEEEEeC
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMD-CTMVLAISD 1195 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~-~DrVlVL~~ 1195 (1232)
+|++|+|||||++||.++.+.+.+.|++. .+++|+|++||+++.+.+ ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999999999864 347899999999999977 899999874
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=323.57 Aligned_cols=192 Identities=21% Similarity=0.271 Sum_probs=164.6
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 688999999963 469999999999999999999999999999999999999999999999999875 34567889999
Q ss_pred EccCCCCC-cccHHhccCCC--CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000904 1066 IPQDPTLF-NGTVRYNLDPL--SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1066 VpQdP~LF-~gTIr~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
+||++.++ ..|+++|+... ....+.++.++++..++.+.... ...+||+|||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDY-----------PCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhC-----------ChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999886 57999998632 11234567888888877543321 224799999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcCeEE
Q 000904 1143 ILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMDCTMVL 1191 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~~DrVl 1191 (1232)
+|||||||++||..+.+.+.+.|++. ..++|+|++||+.+.+.++|.-.
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 99999999999999999999999974 34789999999999999998643
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=328.77 Aligned_cols=198 Identities=24% Similarity=0.359 Sum_probs=164.5
Q ss_pred EEEEeeEeEecC----C-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEEC--C--eeCCCCCh
Q 000904 986 VDICDLQIRYRP----D-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD--G--IDISKLGL 1056 (1232)
Q Consensus 986 I~~~nvs~~Y~~----~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~ID--G--~dI~~i~l 1056 (1232)
++++|++++|+. + .+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+| | +++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 689999999953 1 2469999999999999999999999999999999999999999999998 4 37766665
Q ss_pred Hh---h-hccEEEEccCCCCCcc-cHHhccCC----CCC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1057 HD---L-RSRFGIIPQDPTLFNG-TVRYNLDP----LSQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1057 ~~---L-R~~i~iVpQdP~LF~g-TIr~NLdp----~~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
.+ + +++++|+||+|.+|.. |+++|+.. .+. ..++++.++++..++.+...+. .+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHL----------PPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhC----------CcccCC
Confidence 43 3 4679999999988754 89999852 111 1234667788888876533222 245899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEE
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAI 1193 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL 1193 (1232)
+|||||++|||||+++|++|+|||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998753 37899999999999875 9999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=366.60 Aligned_cols=211 Identities=23% Similarity=0.334 Sum_probs=178.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC--CccEEEECCeeCCCCChHh-hhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP--AGGKILVDGIDISKLGLHD-LRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep--~~G~I~IDG~dI~~i~l~~-LR~~ 1062 (1232)
++++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+..+ .|++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 689999999953 4699999999999999999999999999999999999987 7999999999998877654 4578
Q ss_pred EEEEccCCCCCcc-cHHhccCCCCC-------CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1063 FGIIPQDPTLFNG-TVRYNLDPLSQ-------HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1063 i~iVpQdP~LF~g-TIr~NLdp~~~-------~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
++|+||+|.+|.. |+++|+..... .. ++++.++++.+++.+...+ ....+||||||||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgG~~qr 149 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT----------RPVGDYGGGQQQL 149 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCccc----------CchhhCCHHHHHH
Confidence 9999999988764 99999863211 11 2346677777776432111 1235799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
++|||||+++|+||+|||||++||+.+.+.+.+.|++.. +++|||+||||++.+.+ ||+|++|++|++++.+++++..
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 999999999999999999999999999999999988742 47899999999999987 9999999999999999887653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=365.86 Aligned_cols=207 Identities=25% Similarity=0.323 Sum_probs=176.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh-HhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL-HDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-~~LR~~i 1063 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.|+...+. ..+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999953 469999999999999999999999999999999999999999999999999976543 3467889
Q ss_pred EEEccCCCCCcc-cHHhccCCCC-----C-CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLS-----Q-HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~-----~-~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
+|+||+|.+|.+ |+++|+.... . .. ++++.++++.+++.+.. .....+||||||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~ 150 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP-----------DTPLKYLSIGQRQMVE 150 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCc-----------CCchhhCCHHHHHHHH
Confidence 999999988865 9999986321 1 11 23567778777764321 2234589999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p 1204 (1232)
|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|||+||||++.+.+ ||+|++|++|++++.+++
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998753 47899999999999877 999999999999876654
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=332.37 Aligned_cols=380 Identities=17% Similarity=0.205 Sum_probs=309.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCC---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 303 TIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEG-KAG---FKYEGYVLAITLFVAKILESLSQRQWYFRSRLI 378 (1232)
Q Consensus 303 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~-~~~---~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1232)
.+.+..|+.+..+.++.++.......-|.+++++++-+.. .+. .+..-..+++..++..+...+-..++.+...|+
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv 219 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERV 219 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678889999999999999999999999999998876 222 122344555555556666666666778889999
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000904 379 GLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEF-PFWFHQIWTTSVQLCIALIILFHAVGL-ATIAA 456 (1232)
Q Consensus 379 ~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~-~~~~~~~w~~plqi~~~~~~L~~~lG~-~~l~g 456 (1232)
..|+|..++..+.++.....+. +.+||+++.++.|++-+.+. ..++.+.--..+|.+.++.++... .| .+++.
T Consensus 220 ~~rlR~~lF~sil~QdiaFFD~----nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~-S~~Ltlv~ 294 (716)
T KOG0058|consen 220 VARLRTDLFRSLLRQDIAFFDE----NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSL-SWRLTLVT 294 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhhcc----CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh-hHHHHHHH
Confidence 9999999999999999888764 46999999999999999885 457777777778888888777654 66 77788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 457 LVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1232)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~ 536 (1232)
+..+++++.+..++++..++..++..++..+..+..+|.|++||+|++|+-|+...+++.+.=+.-++.-+|-....++.
T Consensus 295 ~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f 374 (716)
T KOG0058|consen 295 LIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIF 374 (716)
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 88888888999999999999999999999999999999999999999999999888877664444444444444444333
Q ss_pred HHHH--hHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcch
Q 000904 537 TFLF--WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMN 614 (1232)
Q Consensus 537 ~~~~--~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 614 (1232)
...+ ..--..++++.+|.+...++.+|++..-+.+-+--.+..++..+....+.++++..|.+|+.+|++.++.-+..
T Consensus 375 ~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~ 454 (716)
T KOG0058|consen 375 FGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT 454 (716)
T ss_pred HhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC
Confidence 2221 12234677888999999999999999999988778888999999999999999999999999999875433222
Q ss_pred hcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 615 IRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 615 ~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
....|. . ..+.|+++|++|+||.+++.|+|+|+||+|+|||.||+||||||||||+.+.|+..|+|.+|+|.-
T Consensus 455 G~~~p~-~-~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 455 GTLAPD-H-LQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL 527 (716)
T ss_pred Cccccc-c-ccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 222332 1 568999999999999999999999999999999999999999999999999999999999999853
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=365.25 Aligned_cols=208 Identities=18% Similarity=0.293 Sum_probs=175.5
Q ss_pred EEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH-hhhccEEEE
Q 000904 988 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH-DLRSRFGII 1066 (1232)
Q Consensus 988 ~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~-~LR~~i~iV 1066 (1232)
++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|++++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999953 4699999999999999999999999999999999999999999999999999766543 457789999
Q ss_pred ccCCCCCc-ccHHhccCCCC----C--CCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1067 PQDPTLFN-GTVRYNLDPLS----Q--HTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1067 pQdP~LF~-gTIr~NLdp~~----~--~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
||+|.+|. .|+++|+.... . .+. +++.++++.+++.+ .......+||||||||++|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-----------DPRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHHHHHHHH
Confidence 99998764 59999986311 1 122 23556666665542 223345689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
||+++|++|||||||++||..+.+.+.+.|++.. .+.|||+||||++.+.+ ||+|++|++|++++.|+++++.
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999999998743 47899999999999877 9999999999999999988874
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=295.38 Aligned_cols=206 Identities=28% Similarity=0.393 Sum_probs=174.5
Q ss_pred eEEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC---hHhh
Q 000904 985 KVDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG---LHDL 1059 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~L 1059 (1232)
.|++++++..-+.+ .-.+|+||++.|++||.+||||+||||||||+..|.|+-+|++|+|.+.|+++.+++ ...+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 47788887776432 335899999999999999999999999999999999999999999999999999887 4455
Q ss_pred h-ccEEEEccCCCCC-cccHHhccC-CC---CC-CC--HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1060 R-SRFGIIPQDPTLF-NGTVRYNLD-PL---SQ-HT--DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1060 R-~~i~iVpQdP~LF-~gTIr~NLd-p~---~~-~s--d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
| +++|+|+|.-.|. +-|-.||+. |. ++ .. .+...+.|+++||.+.....| .+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 5 6799999998876 558888874 43 22 12 233567788888876655554 5799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEEEe
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~ 1201 (1232)
++||||+.-+|+||+-||||-+||.+|-+.|-+.+-... .+.|.++||||......|||++-|.+|+++|.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999876532 47899999999999999999999999999873
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=322.09 Aligned_cols=193 Identities=27% Similarity=0.318 Sum_probs=166.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. . ..|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHY 77 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEE
Confidence 789999999963 469999999999999999999999999999999999999999999999998753 1 27889999
Q ss_pred EccCCCCC-cccHHhccCCC---CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1066 IPQDPTLF-NGTVRYNLDPL---SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1066 VpQdP~LF-~gTIr~NLdp~---~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
++|++.++ ..|+++|+... ....++++.++++.+++.+.. +.+ ..+||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~----------~~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-HLP----------FGYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-cCC----------hhhcCHHHHHHHHHHHHHhcCC
Confidence 99988765 67999998532 123456789999999987643 222 2479999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcCeEEEEeC
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMDCTMVLAISD 1195 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~~DrVlVL~~ 1195 (1232)
++|+|||||++||..+.+.+.+.|++. .+++|+|++||+++.+.. |+++.++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999864 347899999999999988 99988754
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=320.09 Aligned_cols=192 Identities=23% Similarity=0.294 Sum_probs=163.1
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .+.|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 468999999963 46999999999999999999999999999999999999999999999999998765 456789999
Q ss_pred EccCCCCCc-ccHHhccCCCC---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1066 IPQDPTLFN-GTVRYNLDPLS---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
+||++.+|. .|+++|+.... ...++++.++++.+++.+.... ...+||+|||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-----------PAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC-----------ChhhcCHHHHHHHHHHHHHhcCC
Confidence 999998876 69999985321 1224468889999988765432 23579999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcCeEEE
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMDCTMVLA 1192 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~~DrVlV 1192 (1232)
++|+|||||++||..+.+.+.+.|++. ..+.|+|++||+...+ .||+++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 999999999999999999999999874 3478999999998543 3466654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=343.27 Aligned_cols=381 Identities=18% Similarity=0.149 Sum_probs=283.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 299 SVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLI 378 (1232)
Q Consensus 299 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1232)
..++...+.+++.++++.++.++..++..+.|++++.+++.+..++......+.+++++++..++..++.....+...+.
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK11174 11 RWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKA 90 (588)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788889999999999999999999999999997642211112233344555566667777767677778889
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000904 379 GLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGL-ATIAA 456 (1232)
Q Consensus 379 ~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~-~~l~g 456 (1232)
+.++...+...+|+|.++++.....+.++|+++|.+++|++++.++.. .+..++...+..++++++++. ++| .+++.
T Consensus 91 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~ 169 (588)
T PRK11174 91 GQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFP-INWAAGLIL 169 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999998887888999999999999999998754 566666666665655555443 344 44555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000904 457 LVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAI----EILRNVEYKWLSAVQLR 532 (1232)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i----~~~R~~E~~~l~k~~~~ 532 (1232)
++++++...+...+.++.++.+++.++..++..+.+.|.++||++||.|+||+.+.+++ ++.|+.+.+..+.....
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 170 LGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666678888999999999999999999999999999999999999888876 55666666655554444
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHhCCCcChh---------hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000904 533 KAYNTFLFWSSPVLVSTATFGACYFLNVPLYAS---------NVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVN 603 (1232)
Q Consensus 533 ~~~~~~~~~~~p~~v~~~tf~~~~~~~~~Lt~~---------~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~ 603 (1232)
..+..++... +.++ ++.++.+.+.| .+|.+ .+|.++.+...+..|+..++..+..+.++++|++||.+
T Consensus 250 ~~~~~~~~~~-~~~~-~~~~~~~~~~g-~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 250 SAVLEFFASI-SIAL-VAVYFGFSYLG-ELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHHH-HHHH-HHHHHHHHHhc-ccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333222 2222 22334333333 34443 44555556667789999999999999999999999999
Q ss_pred HhCCCCCCcchhcc-cCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCC
Q 000904 604 FLEAPELQSMNIRQ-KGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 604 fL~~~e~~~~~~~~-~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~ 682 (1232)
+++.|+.++..... .+. . ..+.|+++|++|.|++ ++++|+|+||+|++|+++||||+||||||||+++|+|++ |
T Consensus 327 ~l~~~~~~~~~~~~~~~~-~-~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p 401 (588)
T PRK11174 327 FLETPLAHPQQGEKELAS-N-DPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P 401 (588)
T ss_pred HHcCCCcccCCCccccCC-C-CCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 99876533211111 111 0 2346999999988764 358999999999999999999999999999999999999 7
Q ss_pred cccccc
Q 000904 683 TQGTIL 688 (1232)
Q Consensus 683 ~~G~v~ 688 (1232)
.+|+|.
T Consensus 402 ~~G~I~ 407 (588)
T PRK11174 402 YQGSLK 407 (588)
T ss_pred CCcEEE
Confidence 899884
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=348.21 Aligned_cols=465 Identities=20% Similarity=0.288 Sum_probs=273.2
Q ss_pred cceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccccccccccccCCCcch
Q 000904 625 NHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVENPNVST 704 (1232)
Q Consensus 625 ~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~~~~l~~~~~~~~~~~ 704 (1232)
...++++|++.+|+. .++|+|+||++++||.++++|.||+|||||++.|.|.++|++|++.-+.-.. ...+...
T Consensus 6 ~~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~---~~~sp~~ 79 (500)
T COG1129 6 PPLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPV---AFSSPRD 79 (500)
T ss_pred cceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEc---cCCCHHH
Confidence 357899999999974 5899999999999999999999999999999999999999999984332100 0000000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhh-hhhhHH
Q 000904 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDL-DVPFSL 783 (1232)
Q Consensus 705 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~-~~~~~l 783 (1232)
....++..+ ..-..+ .-.+..+.++| +-+.|...|---...+.-.+...-+..+.. ..|...
T Consensus 80 A~~~GI~~V----~QEl~L-------~p~LsVaeNif------Lgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~ 142 (500)
T COG1129 80 ALAAGIATV----HQELSL-------VPNLSVAENIF------LGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL 142 (500)
T ss_pred HHhCCcEEE----eechhc-------cCCccHHHHhh------cccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhh
Confidence 000000000 000000 00000011110 112222111000111111111111111110 002222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchH
Q 000904 784 IFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEE 863 (1232)
Q Consensus 784 ~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~ 863 (1232)
..-+...-+.+..++-.......+++++.|...+...=.....+..|+++. .+.+--.+.|++.|...=...|-.+...
T Consensus 143 v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~ISHrl~Ei~~i~DritVlRDG 221 (500)
T COG1129 143 VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYISHRLDEVFEIADRITVLRDG 221 (500)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEcCcHHHHHHhcCEEEEEeCC
Confidence 222222222333344444446667788889888776666666666677653 3444444555555544322222222211
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 000904 864 DRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLP-PGTFTPGFIGMALSYGLSLNSSLVMSIQ 942 (1232)
Q Consensus 864 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~-~g~~~~g~~gl~l~~~~~l~~~l~~~v~ 942 (1232)
...-.. + .+.++.
T Consensus 222 ~~v~~~--------------------------------------------~~~~~~~~---------------------- 235 (500)
T COG1129 222 RVVGTR--------------------------------------------PTAAETSE---------------------- 235 (500)
T ss_pred EEeeec--------------------------------------------ccccCCCH----------------------
Confidence 100000 0 000110
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCC
Q 000904 943 NQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRT 1022 (1232)
Q Consensus 943 ~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrt 1022 (1232)
.++-+.|+. | +..+..++ + +..-+..-.++++|++.. ..++|+||++++||.+||.|=-
T Consensus 236 --~~lv~~MvG--r--~~~~~~~~-~--------~~~~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLv 294 (500)
T COG1129 236 --DELVRLMVG--R--ELEDLFPE-P--------PEEGIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLV 294 (500)
T ss_pred --HHHHHHhhC--c--chhhhccc-c--------cccCCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccc
Confidence 001111110 1 00000000 0 000001124677787642 2589999999999999999999
Q ss_pred CCChHHHHHHHhccccCCccEEEECCeeCCCCChH-hhhccEEEEccCCC----CCcccHHhccCCC--CCCCHH-HHHH
Q 000904 1023 GSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH-DLRSRFGIIPQDPT----LFNGTVRYNLDPL--SQHTDQ-EIWE 1094 (1232)
Q Consensus 1023 GSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~-~LR~~i~iVpQdP~----LF~gTIr~NLdp~--~~~sd~-eI~~ 1094 (1232)
|||+|-++++|+|.-++.+|+|.+||.++.--+.+ ..+..|+|||-|-. +...+|++|+..- ..++.. -+..
T Consensus 295 GaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~ 374 (500)
T COG1129 295 GAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDR 374 (500)
T ss_pred cCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccCh
Confidence 99999999999999999999999999988777655 56788999999873 4466999998532 111000 0111
Q ss_pred HHHHcCCcHHHHhhc---cCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-C
Q 000904 1095 VLAKCHLGEAVREKE---NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-A 1170 (1232)
Q Consensus 1095 aL~~~~L~~~i~~~p---~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~ 1170 (1232)
.-++....+++..+. .+.+..+ .+||||-+|+++|||.|..+|+||||||||-++|.-+.+.|.+.|++.. +
T Consensus 375 ~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~ 450 (500)
T COG1129 375 RKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE 450 (500)
T ss_pred HHHHHHHHHHHHhcCcccCCccchh----hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC
Confidence 112222223343332 2333333 5799999999999999999999999999999999999999999999854 5
Q ss_pred CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 000904 1171 DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1171 ~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p 1204 (1232)
|.+||+||-+++.+.. ||||+||.+|+++..=+.
T Consensus 451 G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 451 GKAILMISSELPELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred CCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecc
Confidence 7999999999998885 999999999999864333
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=325.98 Aligned_cols=186 Identities=26% Similarity=0.405 Sum_probs=159.8
Q ss_pred EEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCC---CcccHHhccCCC
Q 000904 1008 CTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTL---FNGTVRYNLDPL 1084 (1232)
Q Consensus 1008 l~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~L---F~gTIr~NLdp~ 1084 (1232)
|+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.|++++|+||+|.+ |..|+++|+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998864 357789999999976 457999997421
Q ss_pred --------CC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCC
Q 000904 1085 --------SQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI 1153 (1232)
Q Consensus 1085 --------~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~L 1153 (1232)
.. ..++++.++++.+++.+.... ...+||+|||||++|||||+++|++|||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-----------PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 11 123457888998888654432 23469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1154 DNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1154 D~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|..+.+.+.+.|++.. ++.|+|++||+++.+.+ ||+|+++ +|++++.|+++++.++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999998753 47899999999998876 9999999 8999999999998764
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=393.08 Aligned_cols=215 Identities=24% Similarity=0.333 Sum_probs=189.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|+++...+++|+||++++||.+||+|+||||||||+++|.|+++|++|+|.++|.|+.. ...+.|+++|
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEE
Confidence 599999999996444579999999999999999999999999999999999999999999999999975 5677889999
Q ss_pred EEccCCCCCc-ccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFN-GTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
++||++.+|. .|+++|+..+. ..+ ++++.+.|+.++|.+.... ...+||||||||++||||
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~-----------~~~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNE-----------EAQDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999886 49999996421 112 3457788888888654332 345799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
|+.+|+||+||||||+||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|++++|.++-
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999999999999999999999999987678999999999999976 9999999999999999999997643
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=364.09 Aligned_cols=212 Identities=24% Similarity=0.402 Sum_probs=175.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc--cCCccEEEEC----------------
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV--EPAGGKILVD---------------- 1047 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~--ep~~G~I~ID---------------- 1047 (1232)
|+++|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 478999999953 46999999999999999999999999999999999997 7999999997
Q ss_pred -------CeeCC-------CCC---hHhhhccEEEEccC-CCCCc-ccHHhccCC-C--CCCC----HHHHHHHHHHcCC
Q 000904 1048 -------GIDIS-------KLG---LHDLRSRFGIIPQD-PTLFN-GTVRYNLDP-L--SQHT----DQEIWEVLAKCHL 1101 (1232)
Q Consensus 1048 -------G~dI~-------~i~---l~~LR~~i~iVpQd-P~LF~-gTIr~NLdp-~--~~~s----d~eI~~aL~~~~L 1101 (1232)
|.++. ..+ ..++|++++|+||+ +.+|. .|+++|+.. . ...+ ++++.++|+.+++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 33331 111 23467889999998 56775 599999852 1 1122 3456778888888
Q ss_pred cHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEec
Q 000904 1102 GEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAH 1179 (1232)
Q Consensus 1102 ~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAH 1179 (1232)
.+...+ ...+||||||||++|||||+.+|++|+|||||++||+++.+.+.+.|++.. .++|||+|||
T Consensus 159 ~~~~~~-----------~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 159 SHRITH-----------IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred hhhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 654433 235799999999999999999999999999999999999999999998753 3789999999
Q ss_pred Chhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1180 RIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1180 rl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|++.+.+ ||+|++|++|++++.|++++++++
T Consensus 228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred CHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 9999977 999999999999999999988764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=317.72 Aligned_cols=173 Identities=28% Similarity=0.427 Sum_probs=147.9
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC--CChHhhhccEEEEccCC--CCCcc
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK--LGLHDLRSRFGIIPQDP--TLFNG 1075 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~--i~l~~LR~~i~iVpQdP--~LF~g 1075 (1232)
..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .....+|++++|+||+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999999852 23456788999999999 57888
Q ss_pred cHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000904 1076 TVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDE 1148 (1232)
Q Consensus 1076 TIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDE 1148 (1232)
|+++|+... ...+ ++++.++++.+++.+..... ..+||+|||||++|||||+++|++|||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERP-----------THCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999631 1122 24567888888886654433 35799999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh
Q 000904 1149 ATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPT 1183 (1232)
Q Consensus 1149 aTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~t 1183 (1232)
||++||..+.+.+.+.|++.. +++|||+|||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998753 47899999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=327.13 Aligned_cols=212 Identities=25% Similarity=0.317 Sum_probs=172.2
Q ss_pred eEEEEeeEeEecC------------------CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEE
Q 000904 985 KVDICDLQIRYRP------------------DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILV 1046 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~------------------~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~I 1046 (1232)
.|+++||...|+. ...++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 4677777766643 2235899999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCChHhhhccEEEEccCCCCC-cccHHhccCCC---CCCCHHHH----HHHHHHcCCcHHHHhhccCCcccccC
Q 000904 1047 DGIDISKLGLHDLRSRFGIIPQDPTLF-NGTVRYNLDPL---SQHTDQEI----WEVLAKCHLGEAVREKENGLDSLVVE 1118 (1232)
Q Consensus 1047 DG~dI~~i~l~~LR~~i~iVpQdP~LF-~gTIr~NLdp~---~~~sd~eI----~~aL~~~~L~~~i~~~p~gLdt~v~e 1118 (1232)
||. +++++|++.++ ..|+++|+... ...+.++. .++++..++.+.+ ..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFI-----------YQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cC
Confidence 993 56788888665 45999998531 12333433 3445555554433 33
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCC
Q 000904 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDG 1196 (1232)
Q Consensus 1119 ~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G 1196 (1232)
.+.+||+|||||++||||++++|+||+|||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 456899999999999999999999999999999999999999999987642 47899999999999877 9999999999
Q ss_pred EEEEecChhHHHhhcCCHHHHHHH
Q 000904 1197 KLAEYDEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1197 ~vvE~g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
++++.|++++++++....|+.+.+
T Consensus 220 ~i~~~g~~~~~~~~~~~~~~~~~~ 243 (264)
T PRK13546 220 KLKDYGELDDVLPKYEAFLNDFKK 243 (264)
T ss_pred EEEEeCCHHHHHHHhHHHHHHHHh
Confidence 999999999999875555544444
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=367.14 Aligned_cols=213 Identities=28% Similarity=0.377 Sum_probs=185.2
Q ss_pred eEEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh---
Q 000904 985 KVDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL--- 1059 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L--- 1059 (1232)
.++++|++++|+.+ .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||+++.+.+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999642 2469999999999999999999999999999999999999999999999999999887654
Q ss_pred -hccEEEEccCCCCCc-ccHHhccCCC----CCC---CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1060 -RSRFGIIPQDPTLFN-GTVRYNLDPL----SQH---TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1060 -R~~i~iVpQdP~LF~-gTIr~NLdp~----~~~---sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
|+.++|+||+|.+|+ .|+.+|++.. +.. .++++.+.++.+++.+.... .+.+||+|||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~-----------~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEY-----------QPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcC-----------CcccCCHHHHHH
Confidence 578999999999996 4999999631 111 23356677777777654433 345899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
++|||||+++|++|+|||||++||.++.+.+.+.|++.. .+.|+|+|||+++.+..||++++|++|++++.|++++..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999998753 478999999999999889999999999999999999875
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=362.96 Aligned_cols=199 Identities=26% Similarity=0.347 Sum_probs=169.7
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC--ccEEEECCeeCCCCChHhhhccEEEEccCCCCCc-cc
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA--GGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFN-GT 1076 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~--~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~-gT 1076 (1232)
+.+|+|+|+++++||++||+|+||||||||+++|.|+.+|. +|+|.+||.++.. +.+++++||||++.+|. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999985 8999999998742 45678999999999985 59
Q ss_pred HHhccCCC------CCCCHHH----HHHHHHHcCCcHHHHhhccCCcccccC-CCCCCChhHHHHHHHHHHHccCCCEEE
Q 000904 1077 VRYNLDPL------SQHTDQE----IWEVLAKCHLGEAVREKENGLDSLVVE-DGSNWSMGQRQLFCLGRALLRRSRILV 1145 (1232)
Q Consensus 1077 Ir~NLdp~------~~~sd~e----I~~aL~~~~L~~~i~~~p~gLdt~v~e-~G~nLSgGQRQrl~LARALL~~~kILI 1145 (1232)
++||+... ...++++ +.+.++..+|.+ ..|+.+++ ....||||||||++|||+|+++|+||+
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK-------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 99999631 1223333 556676666643 34677764 367899999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh-hhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1146 LDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPT-VMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1146 LDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~t-i~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||++||..+...+.+.|++.. +++|||+++|+++. +.+ +|+|++|++|++++.|+++++.+
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 999999999999999999998754 58999999999984 544 99999999999999999999863
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=315.33 Aligned_cols=188 Identities=18% Similarity=0.297 Sum_probs=160.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|++ +.++ ++||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++.+.. +++++|
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 689999999953 3445 599999999999999999999999999999999999999999999886543 456999
Q ss_pred EccCCC-CCcccHHhccCCCCC--CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000904 1066 IPQDPT-LFNGTVRYNLDPLSQ--HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1066 VpQdP~-LF~gTIr~NLdp~~~--~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
+||++. +|..|+++|+..... ..++++.++++.+++.+...+ .+.+||+|||||++||||++++|+
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDE-----------KCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhcc-----------ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999985 467899999963221 145678888888888654432 346899999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcCeEE
Q 000904 1143 ILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMDCTMVL 1191 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~~DrVl 1191 (1232)
+|+|||||++||+.+.+.+.+.|++. .+++|+|+|||+++.+.++|-|.
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999999753 35799999999999999998763
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=334.65 Aligned_cols=195 Identities=19% Similarity=0.308 Sum_probs=165.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|.++|++|+|.++ +.++++++|-|..+++|++|||||+|||||++++.|.+.|+.|.|.-.-. -+++
T Consensus 389 vi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred eEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 48999999999765 47999999999999999999999999999999999999999999875432 2445
Q ss_pred EEccCC---CCCcccHHhccCC-CC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1065 IIPQDP---TLFNGTVRYNLDP-LS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1065 iVpQdP---~LF~gTIr~NLdp-~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
+.-|+- ...+-|.-+++.| +. ....+++...|.++||....+..|- .+||+|||.||+.||.+++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhc
Confidence 555543 3456666666654 34 3567889999999999876666554 3899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
.|.||||||||++||.+|...+.++|.+ .+++||+||||...|.. +++|.+.+||.+..++-
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe--~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINE--FPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhc--cCCceeeeechhhHHHHHHHHhHhhccCceeecCc
Confidence 9999999999999999999999999986 36789999999999988 89999999999887643
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=340.09 Aligned_cols=385 Identities=20% Similarity=0.220 Sum_probs=302.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 299 SVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLI 378 (1232)
Q Consensus 299 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1232)
+.++..++.+++.+....++.++..++..+.|++++.+++.+-.... ....+.+++++++..++..+......+...+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (694)
T TIGR03375 136 HWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA-FETLWVLAIGVALAIVFDFVLKTLRSYFLDVA 214 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667788888888999999999999999999999997653221 22233444455555566666666666777888
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 379 GLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW--FHQIWTTSVQLCIALIILFHAVGLATIAA 456 (1232)
Q Consensus 379 ~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~--~~~~w~~plqi~~~~~~L~~~lG~~~l~g 456 (1232)
+.++...+...+|+|.++++... .+.++|++++.+ +|++.+.++... +..+...+. +++.+++++..-++.+++.
T Consensus 215 ~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~ 291 (694)
T TIGR03375 215 GKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWVP 291 (694)
T ss_pred HHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999998765 567899999999 799999987543 233333343 3344445555445577777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 457 LVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1232)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~ 536 (1232)
++++++.+.+..++.+...+..++.++..+++.+.+.|.++++++||.+++|+.+.++.++..++..+...+.....+..
T Consensus 292 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (694)
T TIGR03375 292 LVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLA 371 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888889999999999999999999999999999999999999999999999988888777777776666554
Q ss_pred HHHHhHhhH--HHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcch
Q 000904 537 TFLFWSSPV--LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMN 614 (1232)
Q Consensus 537 ~~~~~~~p~--~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 614 (1232)
..+...... .+.++++|.+.+.++.+|.+..+..+.++..+..|+..++..+..+.+++++++|+.++++.|+.++..
T Consensus 372 ~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~ 451 (694)
T TIGR03375 372 TNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG 451 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 433333222 233466788888888999999999999999999999999999999999999999999999876432211
Q ss_pred hcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 615 IRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 615 ~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
....+... ..+.|+++|++|+|+.+ ++++|+|+||+|++||++||||+||||||||+++|+|+++|.+|++.-
T Consensus 452 ~~~~~~~~-~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 524 (694)
T TIGR03375 452 TRFLHRPR-LQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLL 524 (694)
T ss_pred CCCCCCCC-ccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 11111111 34579999999999743 458999999999999999999999999999999999999999998853
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=319.56 Aligned_cols=193 Identities=26% Similarity=0.300 Sum_probs=157.1
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
+.++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ....+
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~- 94 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG- 94 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc-
Confidence 678888998864 5699999999999999999999999999999999999999999999999876421 11111
Q ss_pred EccCCCCCcccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc
Q 000904 1066 IPQDPTLFNGTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL 1138 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL 1138 (1232)
...+.|+++|+... ...+ ++++.++++..++.+.... ...+||||||||++||||++
T Consensus 95 -----~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~laral~ 158 (224)
T cd03220 95 -----FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDL-----------PVKTYSSGMKARLAFAIATA 158 (224)
T ss_pred -----CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 12357999998521 1112 2345667777666543322 23579999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1139 ~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
++|++|||||||++||.++.+.+.+.|++.. ++.|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 159 ~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 159 LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999998753 36899999999999876 9999999999998865
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=340.10 Aligned_cols=202 Identities=22% Similarity=0.300 Sum_probs=168.9
Q ss_pred eEEEEeeEeEecCCC-CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 985 KVDICDLQIRYRPDS-PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~-~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
.++++|++++|+.+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 488999999996532 4699999999999999999999999999999999999999999999999751
Q ss_pred EEEccCCCCC-cccHHhccCCCC---CCCHHH----HHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1064 GIIPQDPTLF-NGTVRYNLDPLS---QHTDQE----IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1064 ~iVpQdP~LF-~gTIr~NLdp~~---~~sd~e----I~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
++++++.++ ..|+++|+.... ..++++ +.++++.+++.+.... .+.+||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~-----------~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ-----------PVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------CcccCCHHHHHHHHHHH
Confidence 233344443 359999985321 233333 4567788887665433 24579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||+.+|++|||||||++||+.+...+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|+|+++..+
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 9999999999999999999999999999998743 47899999999999977 999999999999999999999865
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=341.22 Aligned_cols=386 Identities=16% Similarity=0.159 Sum_probs=305.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 300 VLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIG 379 (1232)
Q Consensus 300 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1232)
.++..++.+++.++...+..++..++..+.|++++.+++.+-..+. ....+.++++++++.++..+......+...+++
T Consensus 144 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (710)
T TIGR03796 144 ALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR-QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQ 222 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677778888888999999999999999999987643322 122344555566666667777666777888899
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 380 LKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALV 458 (1232)
Q Consensus 380 ~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~ 458 (1232)
.++...+...+|+|.++++.....+.++|+++|.++.| +++.++.. .+..+....+.+++.+++++..=++.+++.++
T Consensus 223 ~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 301 (710)
T TIGR03796 223 IKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIA 301 (710)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988777788999999999988 67877653 44445555555666666666554557777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 459 VIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTF 538 (1232)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~ 538 (1232)
.+++.+.+...+.+...+..++.++..+++.+.+.|.++++++||.+++|+.+.++..+..+++.+...+.....+....
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (710)
T TIGR03796 302 FAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGV 381 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888899999999999999999999999999999999999999999999998888888777666665554433
Q ss_pred HHhHhhH--HHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchh-
Q 000904 539 LFWSSPV--LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNI- 615 (1232)
Q Consensus 539 ~~~~~p~--~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~- 615 (1232)
+...... .+.++++|.+.+.++.+|.+.+++.+.++..+..|+..++..+..+.+++++++||.++++.|+-.+...
T Consensus 382 ~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~ 461 (710)
T TIGR03796 382 LPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEE 461 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence 3322222 2345667888888899999999999999999999999999999999999999999999998754322111
Q ss_pred ---c--ccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 616 ---R--QKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 616 ---~--~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
. ..+... ..+.|+++|++|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|+|.-
T Consensus 462 ~~~~~~~~~~~~-~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 462 EAPAAGSEPSPR-LSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred cccccccccCCC-CCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 0 011011 34679999999999853 368999999999999999999999999999999999999999998853
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=329.86 Aligned_cols=381 Identities=15% Similarity=0.114 Sum_probs=275.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 304 IIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVL-AITLFVAKILESLSQRQWYFRSRLIGLKV 382 (1232)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1232)
..+.+++.++...++.++..++..+.|++++.+++.....+. ...+.+ .+++++..++..+......+...+.+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (529)
T TIGR02868 7 LLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP--VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRS 84 (529)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888899999999999999999987643221 111111 11122233444444444455666778888
Q ss_pred HHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 383 RSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW-FHQIWTTSVQLCIALIILFHAVGLATIAALVVIM 461 (1232)
Q Consensus 383 R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~-~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~ 461 (1232)
...+...+|+|.++++....++.++|+++|.+++|++++.+.... +..+....+.+++++++++..-.+.+++.++.++
T Consensus 85 ~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~ 164 (529)
T TIGR02868 85 LGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLL 164 (529)
T ss_pred HHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 888889999999999887777889999999999999999987654 3334444444444544444332224444444433
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 462 ITVLCNAPL-AKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLF 540 (1232)
Q Consensus 462 ~~~~~~~~~-~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~ 540 (1232)
++..+...+ .+..++..++..+..++..+..+|.++|+++||.|++|+.+.+++++..++..+...+.....+....+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (529)
T TIGR02868 165 LAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQ 244 (529)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333233 3444556677788889999999999999999999999999999988877766666555555554444333
Q ss_pred hHhhHH--HHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhccc
Q 000904 541 WSSPVL--VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQK 618 (1232)
Q Consensus 541 ~~~p~~--v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~ 618 (1232)
.....+ +.++.++.+.+.++.+|.+.+.+.+.+...+..|+..++..+..+.++++|++||.++++.++..+......
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~ 324 (529)
T TIGR02868 245 LLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPA 324 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Confidence 332222 333456777777888999999999988899999999999999999999999999999998654321111000
Q ss_pred C-CCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 619 G-NIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 619 ~-~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
+ ...+..+.|+++|++|+|+++ +++|+|+||+|++||+++||||+|||||||+++|+|+++|.+|++.
T Consensus 325 ~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 393 (529)
T TIGR02868 325 AGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT 393 (529)
T ss_pred CcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 0 000123469999999999753 4799999999999999999999999999999999999999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=356.25 Aligned_cols=201 Identities=24% Similarity=0.346 Sum_probs=168.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +.+++|
T Consensus 2 l~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~-----------~~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP-----------NERLGK 68 (530)
T ss_pred EEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 789999999953 4699999999999999999999999999999999999999999999997 246999
Q ss_pred EccCCCCCcc-cHHhccCCCC-----------------C----------------------CCHHHHHHHHHHcCCcHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPLS-----------------Q----------------------HTDQEIWEVLAKCHLGEAV 1105 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~~-----------------~----------------------~sd~eI~~aL~~~~L~~~i 1105 (1232)
+||+|.+|.+ |+++|+.... . ..++++.++|+.+++.+..
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 148 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ 148 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH
Confidence 9999988754 9998875210 0 0123455666666664322
Q ss_pred HhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhh
Q 000904 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1106 ~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~ 1185 (1232)
.. ....+||||||||++|||||+.+|++|+|||||++||+++...+.+.|++ .++|||+||||++.+.
T Consensus 149 ~~----------~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~ 216 (530)
T PRK15064 149 HY----------GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLN 216 (530)
T ss_pred hc----------CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHH
Confidence 11 12458999999999999999999999999999999999999999999985 4789999999999998
Q ss_pred h-cCeEEEEeCCEEE-EecChhHHHhhc
Q 000904 1186 D-CTMVLAISDGKLA-EYDEPMKLMKRE 1211 (1232)
Q Consensus 1186 ~-~DrVlVL~~G~vv-E~g~p~~Ll~~~ 1211 (1232)
+ ||+|++|++|+++ +.|++++.++.+
T Consensus 217 ~~~d~i~~l~~g~i~~~~g~~~~~~~~~ 244 (530)
T PRK15064 217 SVCTHMADLDYGELRVYPGNYDEYMTAA 244 (530)
T ss_pred hhcceEEEEeCCEEEEecCCHHHHHHHH
Confidence 7 8999999999995 789999887543
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=338.48 Aligned_cols=379 Identities=18% Similarity=0.207 Sum_probs=277.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 305 IICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFK---YEGYVLAITLFVAKILESLSQRQWYFRSRLIGLK 381 (1232)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~---~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1232)
.+.+++.++...++.++..++..+.|++++.+++.+..+.... ...+++++..++..++..+....+.+...++..+
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888999999999999999999999886432211 1111222222223333333333444455566666
Q ss_pred HHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 382 VRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGLATIAALVVI 460 (1232)
Q Consensus 382 ~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~ 460 (1232)
+|. .+|+|.++......++..+|+++|.+++|++++.+.+ ..+..+....+++++++++++..=.+.+++.++.+
T Consensus 236 lr~----~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~ 311 (711)
T TIGR00958 236 IRE----DLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINL 311 (711)
T ss_pred HHH----HHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 664 5566666666555566789999999999999998765 45666667777777777766654333566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 461 MITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLF 540 (1232)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~ 540 (1232)
++.+.+...+.+..++..++.++..++..+...|.+++|++||.|++|+.+.+++++..++-.+..+|.....+....+.
T Consensus 312 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (711)
T TIGR00958 312 PLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTT 391 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777888888888899999999999999999999999999999999777776655543333333332222222111
Q ss_pred hHh--hHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhccc
Q 000904 541 WSS--PVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQK 618 (1232)
Q Consensus 541 ~~~--p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~ 618 (1232)
... -..+.++.+|.+.+..+.+|.+.+.+.+.++..+..|+..++.....+.+++++.+||.+|++.++..+......
T Consensus 392 ~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~ 471 (711)
T TIGR00958 392 SVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLA 471 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 111 122344567778788899999999999999999999999999999999999999999999998754332211111
Q ss_pred CCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 619 GNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 619 ~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
+. +..+.|+++|++|+|++++++++|+|+||+|++||+++|||+||||||||+++|+|+++|.+|+|.-
T Consensus 472 ~~--~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 472 PL--NLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred CC--CCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 21 1345799999999998655578999999999999999999999999999999999999999998853
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=384.13 Aligned_cols=215 Identities=20% Similarity=0.240 Sum_probs=187.4
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
..|+++|++++|+.....+|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.++|.++.+ +.++.|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 3599999999997433569999999999999999999999999999999999999999999999999965 456788899
Q ss_pred EEEccCCCCCc-ccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
||+||++.++. -|++||+..+. ..+ ++.+.++|+.++|.+...+. ...||||||||++|||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~-----------~~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRL-----------AGTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCC-----------hhhCCHHHHHHHHHHH
Confidence 99999998886 59999986421 122 23456788888887654433 2479999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||+.+|+||+|||||++||+.+.+.+.+.|++. .+++|||++||+++.+.. ||||++|++|+++..|++++|.++
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999999999999999999874 357899999999999987 999999999999999999999654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=333.49 Aligned_cols=185 Identities=27% Similarity=0.396 Sum_probs=159.4
Q ss_pred EECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcc-cHHhccCCC---CCCC----H
Q 000904 1018 IVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNG-TVRYNLDPL---SQHT----D 1089 (1232)
Q Consensus 1018 IVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~g-TIr~NLdp~---~~~s----d 1089 (1232)
|+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++|+||++.+|.+ |+++|+... ...+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987654 36789999999999965 999999632 1122 2
Q ss_pred HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc
Q 000904 1090 QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF 1169 (1232)
Q Consensus 1090 ~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~ 1169 (1232)
+++.++++.+++.+...+. ..+||||||||++|||||+++|++|+|||||++||..+.+.+.+.|++..
T Consensus 79 ~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRK-----------PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhcCC-----------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 4567788888876554433 35799999999999999999999999999999999999999999998754
Q ss_pred C--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHH
Q 000904 1170 A--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1170 ~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f 1215 (1232)
+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++++++...|
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 2 7899999999999876 99999999999999999999998766544
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=285.64 Aligned_cols=226 Identities=26% Similarity=0.360 Sum_probs=179.4
Q ss_pred EEEEeeEeEec-------CCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh
Q 000904 986 VDICDLQIRYR-------PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~-------~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~ 1058 (1232)
++++|++..|+ ...-.+.+.|||++++|+.+||+|.||||||||+++|.|+++|++|+|.+||..+.--+-..
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 45666654442 12234789999999999999999999999999999999999999999999999887666666
Q ss_pred hhccEEEEccCCC-CC----------cccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhH
Q 000904 1059 LRSRFGIIPQDPT-LF----------NGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1059 LR~~i~iVpQdP~-LF----------~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
.-++|-+|+|||. -| ++.++-|-+.-.+...++|.+-|+.+||...-... .+..||-||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~----------~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY----------YPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccccc----------chhhcCchh
Confidence 6678999999993 23 33333333322234456799999999986433322 245799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHH--hcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA--EFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~--~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p 1204 (1232)
|||+||||||+-+|+|+|-|||-++||..-...+.+..-+ +..|-.-|.|+.++..++. +|.|+||++|+++|+|++
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 9999999999999999999999999999887777665432 3347899999999999998 999999999999999999
Q ss_pred hHHHhhcCC-HHHHHHHH
Q 000904 1205 MKLMKREGS-LFGQLVRE 1221 (1232)
Q Consensus 1205 ~~Ll~~~~~-~f~~l~~~ 1221 (1232)
.+++.+|.. .=++|++.
T Consensus 235 ~~v~a~P~~~~TkRlieS 252 (267)
T COG4167 235 ADVLASPLHELTKRLIES 252 (267)
T ss_pred hhhhcCCccHHHHHHHHH
Confidence 999988753 34455543
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-31 Score=334.27 Aligned_cols=384 Identities=17% Similarity=0.173 Sum_probs=297.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 299 SVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLI 378 (1232)
Q Consensus 299 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1232)
.+++..++.+++.++...++.++..++..+.|++++.+++.+-.... ...-+.+++++++..++..++.....+...++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD-RSLLVQIALALLAAAVGAAAFQLAQSLAVLRL 203 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566567788888889999999999999999999999987753221 22234455556666666667666667778889
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 379 GLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW--FHQIWTTSVQLCIALIILFHAVGLATIAA 456 (1232)
Q Consensus 379 ~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~--~~~~w~~plqi~~~~~~L~~~lG~~~l~g 456 (1232)
+.++...+...+|+|.++++.....+.++|+++|.++ |++.+.+++.. +..+...++ +++++++++..-++.+++.
T Consensus 204 ~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~ 281 (686)
T TIGR03797 204 ETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSWKLALVA 281 (686)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887777889999999997 89998876543 233333333 3344555555445577777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 457 LVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1232)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~ 536 (1232)
++++++.+.+..++.+.+.+..++.++..+++.+...|.++||++||.++.|+.+.++.++.-++..+...|........
T Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (686)
T TIGR03797 282 VALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLL 361 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888999999999999999999999999999999999999999988887776665555555554444443
Q ss_pred HHHHhHhhHH--HHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcch
Q 000904 537 TFLFWSSPVL--VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMN 614 (1232)
Q Consensus 537 ~~~~~~~p~~--v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 614 (1232)
..+......+ +.++.+|.+...++.+|.+.++++..++..+..|+..++..+..+.+++++++||.++++.|+-.+..
T Consensus 362 ~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 441 (686)
T TIGR03797 362 TVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 3332222222 33455677777788999999999999999999999999999999999999999999999875422111
Q ss_pred hcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 615 IRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 615 ~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
...+. . ..+.|+++|++|+|+++ ++++|+|+||+|++||++||||+||||||||+++|+|+++|.+|+|.-
T Consensus 442 -~~~~~-~-~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 512 (686)
T TIGR03797 442 -KTDPG-K-LSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY 512 (686)
T ss_pred -cCCCC-C-CCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 01111 1 34579999999999753 368999999999999999999999999999999999999999999843
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=332.18 Aligned_cols=206 Identities=26% Similarity=0.356 Sum_probs=175.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhh-ccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLR-SRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR-~~i 1063 (1232)
-++++|++.+|++ -++|+||||++++||.+|++|.||||||||+|.|.|.|+|++|+|.+||....-.++.+-+ .-|
T Consensus 8 ll~~~~i~K~Fgg--V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGG--VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCC--ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 4889999999974 3699999999999999999999999999999999999999999999999999877776654 579
Q ss_pred EEEccCCCCCc-ccHHhccCCCC-------CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPLS-------QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~~-------~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
++|.||+.|+. -||.+||-... -.+. ++..++|++.++. ...++.|+ +||+||||.+
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-------~~~~~~v~----~LsiaqrQ~V 154 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-------IDPDTLVG----DLSIAQRQMV 154 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-------CChhhhhh----hCCHHHHHHH
Confidence 99999999985 59999994222 1232 3445566666554 12455554 6999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
.||||+..++||||||||||+|+...-+.+.+.+++.. +|.++|+||||++.|.+ ||||.||.||+.+...+
T Consensus 155 eIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 155 EIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999999999888888888888754 58899999999999988 99999999999987666
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=358.56 Aligned_cols=200 Identities=23% Similarity=0.320 Sum_probs=172.6
Q ss_pred CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC---ccEEEECCeeCCCCChHhhhccEEEEccCCCCCc-
Q 000904 999 SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA---GGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFN- 1074 (1232)
Q Consensus 999 ~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~- 1074 (1232)
.+++|+|+|+++++||.+||+|+||||||||+++|.|..+|. +|+|.+||.+++ ..++|++++||||++.++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 457999999999999999999999999999999999999885 799999999875 3578899999999999885
Q ss_pred ccHHhccCC---CC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCC--CCCCChhHHHHHHHHHHHccCCC
Q 000904 1075 GTVRYNLDP---LS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVED--GSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1075 gTIr~NLdp---~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~--G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
.||||||.. .. ..+ ++++.+.++..++. +..|+.+++. +..||||||||++|||+|+.+|+
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~ 186 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR-------KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPP 186 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCch-------hcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCC
Confidence 599999952 11 112 23466777777664 3568889874 47899999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChh-hh-hhcCeEEEEeCCEEEEecChhHHH
Q 000904 1143 ILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIP-TV-MDCTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~-ti-~~~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
||+|||||++||+.+...+.+.|++.. +++|+|+++|+++ .+ ..+|+|++|++|+++++|+++++.
T Consensus 187 vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 187 LLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 999999999999999999999999854 4799999999985 44 459999999999999999999884
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=351.17 Aligned_cols=211 Identities=23% Similarity=0.286 Sum_probs=165.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
-|+++|++++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ +.+++
T Consensus 6 ~l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~ 73 (556)
T PRK11819 6 IYTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVG 73 (556)
T ss_pred EEEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 4899999999962 24699999999999999999999999999999999999999999999975 24799
Q ss_pred EEccCCCCCcc-cHHhccCCC-C----------------CCC----------HHHHHHHHHHcCCcHH---HHhh--ccC
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPL-S----------------QHT----------DQEIWEVLAKCHLGEA---VREK--ENG 1111 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~-~----------------~~s----------d~eI~~aL~~~~L~~~---i~~~--p~g 1111 (1232)
|+||+|.+++. |+++|+... . ... .+++.+.++.++.++. +... ..|
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 153 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALR 153 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCC
Confidence 99999998865 999998521 0 000 0112222222221110 1000 012
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeE
Q 000904 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMV 1190 (1232)
Q Consensus 1112 Ldt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrV 1190 (1232)
++ .......+||||||||++||||++.+|++|||||||++||+++.+.+.+.|++. +.|||+|||+++.+.. ||+|
T Consensus 154 l~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 154 CP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred CC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeE
Confidence 32 123345689999999999999999999999999999999999999999999874 3699999999999987 8999
Q ss_pred EEEeCCEEE-EecChhHHHhh
Q 000904 1191 LAISDGKLA-EYDEPMKLMKR 1210 (1232)
Q Consensus 1191 lVL~~G~vv-E~g~p~~Ll~~ 1210 (1232)
++|++|+++ ..|++++..+.
T Consensus 231 ~~l~~g~i~~~~g~~~~~~~~ 251 (556)
T PRK11819 231 LELDRGRGIPWEGNYSSWLEQ 251 (556)
T ss_pred EEEeCCEEEEecCCHHHHHHH
Confidence 999999987 66888876553
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=322.46 Aligned_cols=374 Identities=18% Similarity=0.125 Sum_probs=271.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 309 WRDIFMSGFFALLKVLTLSAGPLLLNAFILVTE-GKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLT 387 (1232)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~ 387 (1232)
|+.++...++.++..++..+.|++++.+++.+. ++. ....-+.+++.+++..++..+......+...+++.++...+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGE-PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888999999999999999999999773 322 112223344445555556666666666777788888888888
Q ss_pred HHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000904 388 AAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGL-ATIAALVVIMITVL 465 (1232)
Q Consensus 388 ~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~~~~~~~~ 465 (1232)
..+|+|.++++.....+.++|+++|.+++|++++.++.. .+..+....+..++++++++.. +| .+++.++.+++...
T Consensus 81 ~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPA-DWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 889999999887777778999999999999999998654 4566665555555555544432 33 33333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 000904 466 CNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPV 545 (1232)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~ 545 (1232)
+...+.++..+..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+.-++..+...+.....+....+......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777878888889999999999999999999999999999998887765443333222222222222222111111
Q ss_pred HHH--HHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCC
Q 000904 546 LVS--TATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIEN 623 (1232)
Q Consensus 546 ~v~--~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~ 623 (1232)
+.. ++.++.+.+..+.+|.+.+++.+.+...+..|+..+...+..+.+++++++||.++++.++.+.... ..+. .
T Consensus 240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~-~~~~-~- 316 (529)
T TIGR02857 240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA-PVTA-A- 316 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-CCCC-C-
Confidence 111 1223444445778999999999999999999999999999999999999999999998543221111 1111 1
Q ss_pred CcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 624 VNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 624 ~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
..+.|+++|++|+|+++ ++++|+|+||+|++||+++|+|++|||||||+++|+|+++|.+|++.
T Consensus 317 ~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~ 380 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380 (529)
T ss_pred CCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 22479999999999753 35899999999999999999999999999999999999999999884
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=350.17 Aligned_cols=211 Identities=24% Similarity=0.319 Sum_probs=172.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
-++++|++++|+++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+++ +.+++
T Consensus 4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 71 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG 71 (552)
T ss_pred EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 48899999999622 4699999999999999999999999999999999999999999999985 25799
Q ss_pred EEccCCCCCc-ccHHhccCC-CC-----------------CC-C--------HHHHHHHHHHcCCcHHHHh---h--ccC
Q 000904 1065 IIPQDPTLFN-GTVRYNLDP-LS-----------------QH-T--------DQEIWEVLAKCHLGEAVRE---K--ENG 1111 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp-~~-----------------~~-s--------d~eI~~aL~~~~L~~~i~~---~--p~g 1111 (1232)
|+||+|.++. .|+++|+.. .. .. . .+++.++++.++.++.... . ..|
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALR 151 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCC
Confidence 9999999885 499999852 10 01 1 1346666777775532111 1 123
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeE
Q 000904 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMV 1190 (1232)
Q Consensus 1112 Ldt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrV 1190 (1232)
++. ......+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++. ++|||+||||++.+.+ ||+|
T Consensus 152 l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d~v 228 (552)
T TIGR03719 152 CPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAGWI 228 (552)
T ss_pred CCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeE
Confidence 321 24456789999999999999999999999999999999999999999999874 4699999999999988 8999
Q ss_pred EEEeCCEEE-EecChhHHHhh
Q 000904 1191 LAISDGKLA-EYDEPMKLMKR 1210 (1232)
Q Consensus 1191 lVL~~G~vv-E~g~p~~Ll~~ 1210 (1232)
++|++|+++ ..|++++.++.
T Consensus 229 ~~l~~g~i~~~~g~~~~~~~~ 249 (552)
T TIGR03719 229 LELDRGRGIPWEGNYSSWLEQ 249 (552)
T ss_pred EEEECCEEEEecCCHHHHHHH
Confidence 999999976 56888876654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=314.60 Aligned_cols=193 Identities=23% Similarity=0.279 Sum_probs=157.6
Q ss_pred eEecCCCCccceeeeEEEe-----CCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEc
Q 000904 993 IRYRPDSPLVLKGISCTFE-----GGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIP 1067 (1232)
Q Consensus 993 ~~Y~~~~~~vL~~vsl~I~-----~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVp 1067 (1232)
|+|++. ...++|++++++ +||.+||+|+||||||||+++|.|+++|++|+|.+||. +++|+|
T Consensus 1 ~~y~~~-~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~ 67 (246)
T cd03237 1 YTYPTM-KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKP 67 (246)
T ss_pred CCCccc-ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEec
Confidence 456533 347788888876 79999999999999999999999999999999999984 699999
Q ss_pred cCCC-CCcccHHhccCCCCC-C--CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000904 1068 QDPT-LFNGTVRYNLDPLSQ-H--TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI 1143 (1232)
Q Consensus 1068 QdP~-LF~gTIr~NLdp~~~-~--sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kI 1143 (1232)
|++. .+.+|+++|+..... . ..+...++++.+++.+... ....+||||||||++|||||+++|++
T Consensus 68 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 68 QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred ccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9997 578999999853211 1 1233566777777654332 23457999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEE--EecChhHHHh
Q 000904 1144 LVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLA--EYDEPMKLMK 1209 (1232)
Q Consensus 1144 LILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv--E~g~p~~Ll~ 1209 (1232)
++|||||++||.++...+.+.|++.. .++|||+|||+++.+.. ||+|++|+++..+ ..++|..+.+
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 207 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRS 207 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHH
Confidence 99999999999999999999998753 37899999999999986 9999999775444 5677877653
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=329.89 Aligned_cols=380 Identities=20% Similarity=0.132 Sum_probs=286.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 302 RTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLK 381 (1232)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1232)
...++.+++.++...+..++..++..+.|++++.+++.+-... ....-+.+++++++..++..++.....+...+.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (708)
T TIGR01193 148 IPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQR 226 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888888899999999999999999998764322 111223344444455555666555556677788889
Q ss_pred HHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 382 VRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWF--HQIWTTSVQLCIALIILFHAVGLATIAALVV 459 (1232)
Q Consensus 382 ~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~--~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~ 459 (1232)
+...+...+|+|.+++.....++.++|+++|.++ |.+++.++.... ..+...+ .+++.+++++..-++.+++.+++
T Consensus 227 ~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l~li~l~~ 304 (708)
T TIGR01193 227 LSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMW-ILVIVGLFLVRQNMLLFLLSLLS 304 (708)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999988777889999999998 999998865422 2222233 33344444444333456666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Q 000904 460 IMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRK----AY 535 (1232)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~----~~ 535 (1232)
+++.+.+...+.+..++..++.++..+++.+...|.++||++||.+++|+.+.++.++..++..+.-.+..... +.
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (708)
T TIGR01193 305 IPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAI 384 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777788899999999999999999999999999999999999999998887765554444333333332 22
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchh
Q 000904 536 NTFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNI 615 (1232)
Q Consensus 536 ~~~~~~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 615 (1232)
..++.... .+.++++|.+.+..+.+|.+.+++...++..+..|+..+...+..+.+++++++||.++++.|+-.+...
T Consensus 385 ~~~~~~~~--~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~ 462 (708)
T TIGR01193 385 KAVTKLIL--NVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK 462 (708)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 22222222 2445678888888999999999999999999999999999999999999999999999997654222111
Q ss_pred cccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 616 RQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 616 ~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
...+... ..+.|+++|++|+|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|+|.-
T Consensus 463 ~~~~~~~-~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~i 533 (708)
T TIGR01193 463 KRTELNN-LNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 (708)
T ss_pred cccCCCC-CCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Confidence 1011111 3457999999999973 358999999999999999999999999999999999999999999853
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=277.56 Aligned_cols=219 Identities=23% Similarity=0.349 Sum_probs=185.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCe--eCCCCC----hHh
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI--DISKLG----LHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~--dI~~i~----l~~ 1058 (1232)
.|+++|+++.|+. ..+|.||+++-+.||.+.+.||||+|||||++.|.=+--|.+|+..|.|. |.++.+ ..+
T Consensus 2 sirv~~in~~yg~--~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGA--HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEccccccccc--chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 3789999999964 46999999999999999999999999999999999898999999999773 555543 668
Q ss_pred hhccEEEEccCCCCCcc-cHHhccC--CCC--CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1059 LRSRFGIIPQDPTLFNG-TVRYNLD--PLS--QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~g-TIr~NLd--p~~--~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
||+.+|+|+|...|... ||-+||- |.. ..++ .+..+.|++..|.++.++.|- .|||||+|
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl-----------hlsggqqq 148 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL-----------HLSGGQQQ 148 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCce-----------ecccchhh
Confidence 99999999999988854 9999983 322 1233 345677888888888777764 69999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA-DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~-~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
|++|||||..+|++|++||||++||++-.+.+-+.|++... |-|-++|||..+..+. +.+|+.|++|+|+|.|+..-.
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 99999999999999999999999999999999999998543 7799999999999987 899999999999999997665
Q ss_pred HhhcCCHHH
Q 000904 1208 MKREGSLFG 1216 (1232)
Q Consensus 1208 l~~~~~~f~ 1216 (1232)
-+.+...|+
T Consensus 229 t~p~te~f~ 237 (242)
T COG4161 229 TEPQTEAFK 237 (242)
T ss_pred cCccHHHHH
Confidence 433333443
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=286.78 Aligned_cols=143 Identities=31% Similarity=0.497 Sum_probs=134.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|.. .++++++||++++||.++|+|+||||||||+++|.|+++|++|+|.+||. .+++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY 67 (144)
T ss_pred CEEEEEEEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence 468999999964 36999999999999999999999999999999999999999999999994 47999
Q ss_pred EccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000904 1066 IPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV 1145 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILI 1145 (1232)
+|| ||+|||||++||||++++|++++
T Consensus 68 ~~~------------------------------------------------------lS~G~~~rv~laral~~~p~ill 93 (144)
T cd03221 68 FEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLLL 93 (144)
T ss_pred Ecc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 99999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1146 LDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1146 LDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
|||||++||.++...+.+.|++. ++|+|++||+++.+.. ||++++|++||
T Consensus 94 lDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 94 LDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999875 5799999999999977 89999999986
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=310.71 Aligned_cols=231 Identities=22% Similarity=0.326 Sum_probs=192.4
Q ss_pred eEEEEeeEeEec--CCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCCChH
Q 000904 985 KVDICDLQIRYR--PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKLGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~--~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i~l~ 1057 (1232)
-++++|+++.|. .+...++|||||+|++||++|+||+||||||--.++++|+++- .+|+|.+||.|+-..+-+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 478999999985 3345689999999999999999999999999999999999974 379999999999888877
Q ss_pred hhhc----cEEEEccCCCC-Ccc--cHHhcc----CC----CCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCC
Q 000904 1058 DLRS----RFGIIPQDPTL-FNG--TVRYNL----DP----LSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSN 1122 (1232)
Q Consensus 1058 ~LR~----~i~iVpQdP~L-F~g--TIr~NL----dp----~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~n 1122 (1232)
++|. +|++|+|||.- .+. ||-..+ .. ....-.+++.+.|+.+|+.+--..+ ..-+++
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl--------~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRL--------DAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhh--------hhCCcc
Confidence 7764 89999999952 111 333222 10 1122356788899999997643332 234679
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEE
Q 000904 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLA 1199 (1232)
Q Consensus 1123 LSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv 1199 (1232)
||||||||+.||-||+.+|++||-||||.+||....+.|.+.|++.- .+..+++||||+..|+. +|||.||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 99999999999999999999999999999999999999999988743 37899999999999998 9999999999999
Q ss_pred EecChhHHHhhcCCHHHHHHHHHH
Q 000904 1200 EYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1200 E~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
|.|+.++|++++...|.++.-+..
T Consensus 238 E~~~t~~lF~~PqHpYTr~Ll~ae 261 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKLLAAE 261 (534)
T ss_pred ecCcHHHHhhCCCChHHHHHHhcC
Confidence 999999999999998988766543
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-30 Score=322.35 Aligned_cols=387 Identities=17% Similarity=0.189 Sum_probs=283.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 300 VLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIG 379 (1232)
Q Consensus 300 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1232)
.++..++.+++.+.+..++.++..++..+.|+++..+++.+-.+.... .-..+++.+++..++..+......+...+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSG-LLNRYFAFLLVVALVLALGTAARFYLVTWLG 86 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667778888888999999999999999999999732222111 1112222233333444444455567778889
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 380 LKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGLATIAALV 458 (1232)
Q Consensus 380 ~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~ 458 (1232)
.++...+...+|+|.++.+.....+.+.|+++|.+++|++++.++. ..+..+....+.+++++++++..-.+.+++.++
T Consensus 87 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 166 (576)
T TIGR02204 87 ERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLL 166 (576)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999998776677889999999999999998865 344444445555555555444433333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 459 VIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTF 538 (1232)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~ 538 (1232)
.+++.+.+...+.+.+.+..++.++..++..+...|.++|+++||.+++|+.+.++.++..++..+...+.....+....
T Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (576)
T TIGR02204 167 AVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTA 246 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556788888889999999999999999999999999999999998888877666555444443333322222
Q ss_pred HHhH--hhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCC-Ccchh
Q 000904 539 LFWS--SPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPEL-QSMNI 615 (1232)
Q Consensus 539 ~~~~--~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~-~~~~~ 615 (1232)
+... .-..+..+.+|.+.+..+.+|.+.+++...++..+..|+..++..+..+.+++++++||.++++.++. +....
T Consensus 247 ~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 326 (576)
T TIGR02204 247 IVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAH 326 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC
Confidence 2111 12234445577777788899999999999999999999999999999999999999999999986542 21110
Q ss_pred cccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 616 RQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 616 ~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
....... ..+.|+++|++|+|+.++++++|+|+||+++|||+++|+|++|||||||+++|+|+++|.+|++.
T Consensus 327 ~~~~~~~-~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~ 398 (576)
T TIGR02204 327 PKTLPVP-LRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL 398 (576)
T ss_pred CccCCcC-CCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 0111101 23569999999999864446899999999999999999999999999999999999999999874
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=316.85 Aligned_cols=203 Identities=21% Similarity=0.289 Sum_probs=162.4
Q ss_pred EeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEE-----------ECCeeCCCCChH
Q 000904 989 CDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL-----------VDGIDISKLGLH 1057 (1232)
Q Consensus 989 ~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~-----------IDG~dI~~i~l~ 1057 (1232)
.||+++|+++ .++|+|+| .+++||++||+|+||||||||+++|.|+++|++|+|. +||+++.+....
T Consensus 4 ~~~~~~y~~~-~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPN-SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCc-chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 3788999643 35999999 4999999999999999999999999999999999996 889888765333
Q ss_pred hhhc--cEEEEccCCCCCc----ccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1058 DLRS--RFGIIPQDPTLFN----GTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1058 ~LR~--~i~iVpQdP~LF~----gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
..|. ++++++|++.++. +++++|+.. ...++++.++++.+++.+... ..+.+||+|||||+
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv 148 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKK--KDERGKLDELVDQLELRHVLD-----------RNIDQLSGGELQRV 148 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhch--hHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 2332 4788888776554 566666532 123456788888887765433 34468999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEE---ecChhH
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAE---YDEPMK 1206 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE---~g~p~~ 1206 (1232)
+||||++++|++++|||||++||..+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ |++++ +|.|..
T Consensus 149 ~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~~~~~~~~ 227 (255)
T cd03236 149 AIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYGVVTLPKS 227 (255)
T ss_pred HHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcceeeecCcc
Confidence 99999999999999999999999999999999998754 37899999999999986 99999995 65654 345554
Q ss_pred H
Q 000904 1207 L 1207 (1232)
Q Consensus 1207 L 1207 (1232)
.
T Consensus 228 ~ 228 (255)
T cd03236 228 V 228 (255)
T ss_pred H
Confidence 3
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-30 Score=320.65 Aligned_cols=383 Identities=16% Similarity=0.202 Sum_probs=296.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 302 RTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLK 381 (1232)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1232)
..+++.+++.++++.++.++..++....|+++..+++..-.... ...-+.+++.+++..++..+......+...+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD-RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNK 84 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999999998875543221 11122223334344444555444455567777888
Q ss_pred HHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 382 VRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALVVI 460 (1232)
Q Consensus 382 ~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~ 460 (1232)
+-..+...+|+|.++.+....++.+.|+++|.++.|++++.++.. .+..++...+.+++++++++..=++.+++.++++
T Consensus 85 ~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~ 164 (571)
T TIGR02203 85 VVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVML 164 (571)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888888888999999888777788999999999999999988654 5666666666777777776664334666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 461 MITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLF 540 (1232)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~ 540 (1232)
++.+.+...+.+..++..++..+..+++.+.++|+++|+++||.++.|+.+.++.++..++..+...+.....+....+.
T Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (571)
T TIGR02203 165 PVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPIT 244 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778889999999999999999999999999999999999999999888888777766665555544444433333
Q ss_pred hHhhH--HHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhccc
Q 000904 541 WSSPV--LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQK 618 (1232)
Q Consensus 541 ~~~p~--~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~ 618 (1232)
..... .+.++.+|.+.+..+.+|++.+++++.++..+..|+..+......+.+++++++||.++++.++..+.... .
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~ 323 (571)
T TIGR02203 245 QLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR-A 323 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-C
Confidence 32222 23345677777788999999999999999999999999999999999999999999999987544322111 1
Q ss_pred CCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 619 GNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 619 ~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
.. . ..+.|+++|++|+|+++ ++++|+|+||++++||+++|+|++|||||||+++|+|.++|.+|.|.-
T Consensus 324 ~~-~-~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i 391 (571)
T TIGR02203 324 IE-R-ARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILL 391 (571)
T ss_pred CC-C-CCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEE
Confidence 11 1 23569999999999754 458999999999999999999999999999999999999999999853
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=288.48 Aligned_cols=218 Identities=24% Similarity=0.395 Sum_probs=189.0
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++||+.+|. ...|++++|++|++|...+|+||||+|||||+..+.||.++++|+|.|||.|+.+.+-++|.+++++
T Consensus 2 I~i~nv~K~y~--~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYG--TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhC--CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 67899999996 4579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCC-cccHHhccC----CCCC--C---CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1066 IPQDPTLF-NGTVRYNLD----PLSQ--H---TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1066 VpQdP~LF-~gTIr~NLd----p~~~--~---sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
.-|+..+- .-|||+-+. |+.+ . +...|.+|++-.+|.+.-.+. | .+||||||||--+|-
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry---L--------d~LSGGQrQRAfIAM 148 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY---L--------DELSGGQRQRAFIAM 148 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHh---H--------Hhcccchhhhhhhhe
Confidence 99998754 559997664 3321 1 223478899988887654432 2 369999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcC
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~ 1212 (1232)
.+.++.+-++||||-++||......+++.+|+.. -++|+++|-||+++... +|.|+.|.+|+++..|+|+|+++.
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~-- 226 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP-- 226 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH--
Confidence 9999999999999999999999989999988743 37999999999999987 799999999999999999999975
Q ss_pred CHHHHH
Q 000904 1213 SLFGQL 1218 (1232)
Q Consensus 1213 ~~f~~l 1218 (1232)
+..+++
T Consensus 227 ~~L~ei 232 (252)
T COG4604 227 EILSEI 232 (252)
T ss_pred HHHHHH
Confidence 344443
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-30 Score=320.99 Aligned_cols=365 Identities=18% Similarity=0.191 Sum_probs=271.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 000904 320 LLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSN 399 (1232)
Q Consensus 320 l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~iy~K~L~ls~ 399 (1232)
++..++..+.|++++.+++.+..........+.+++.+++..++..++.....+...+.+.++...+...+|+|.++++.
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 45556677889999999987653321112233344445555555555555555666678888888899999999999988
Q ss_pred hhhccCChhhHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 400 AARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGL-ATIAALVVIMITVLCNAPLAKLQHKF 477 (1232)
Q Consensus 400 ~~~~~~~~G~i~nlms~D~~ri~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~~~~~~~~~~~~~~~~~~~~ 477 (1232)
....++++|+++|.+++|++++.... ..+..++..++..++++++++..++| .+++.++++++.+.+...+.+...+.
T Consensus 85 ~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 85 EFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777899999999999999998664 34566666666666666655555676 55666666666666677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--HHHHHHHHHHH
Q 000904 478 QTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSP--VLVSTATFGAC 555 (1232)
Q Consensus 478 ~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p--~~v~~~tf~~~ 555 (1232)
.++..+..++..+..+|.++++++||.|++|+.+.++..+.-++..+...+.....+....+..... ..+.++.+|.+
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888899999999999999999999998877766444333333333333222221111111 12334556778
Q ss_pred HHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCCcceEEEEeeEE
Q 000904 556 YFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASF 635 (1232)
Q Consensus 556 ~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~I~i~~~sf 635 (1232)
.+.++.+|.+.+++.+.++..+..|+..++..+..+.++++|.+||.++++.++..+......+ . .++.|+++|++|
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~--~-~~~~I~~~~v~~ 321 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVP--E-GRGELDVNIRQF 321 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCC--C-CCCcEEEEEEEE
Confidence 7888899999999999999999999999999999999999999999999986542211111111 1 235699999999
Q ss_pred EecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 636 SWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 636 sw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
+|+.+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|.+|++.
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~ 373 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIR 373 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEE
Confidence 99753 35899999999999999999999999999999999999999999874
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-29 Score=314.33 Aligned_cols=385 Identities=25% Similarity=0.264 Sum_probs=315.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 297 QPSVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSR 376 (1232)
Q Consensus 297 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 376 (1232)
+.+.++..++-+++.+.-..+..++..++..+.|++.+.++|.+--.. ....=.++++++.+..+++.+...--.|...
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~-~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDA-SRSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677778888888888999999999999999999998875433 2334566777788888888887777778888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 000904 377 LIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCI---ALIILFHAVGLAT 453 (1232)
Q Consensus 377 ~~~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~---~~~~L~~~lG~~~ 453 (1232)
+++.|+...+...+|++.|+++.....++++|++++.+ .|.+.|.+++..-- -+.++.+.+ .+.+++.+=++.+
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~--l~~iiD~~~~~i~l~vm~~ys~~L~ 296 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSI--LTLIIDLLFALIFLAVMFLYSWKLT 296 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998889999999998 57999988764322 123333333 3334455446688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 454 IAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRK 533 (1232)
Q Consensus 454 l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~ 533 (1232)
+++++.+++.+.+..++.+.+++..++.++...++-+...|.++||++||..+-|+.|..+.++.=.+..+.-.|.....
T Consensus 297 li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~ 376 (709)
T COG2274 297 LIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLA 376 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999998887777777766666665
Q ss_pred HHHHHHHhHhhHH--HHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCC-
Q 000904 534 AYNTFLFWSSPVL--VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPEL- 610 (1232)
Q Consensus 534 ~~~~~~~~~~p~~--v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~- 610 (1232)
.....+......+ +.+++||++.++.+.+|.|..++..++..-...|+..+......+.+++++.+|+.+.++.|.-
T Consensus 377 ~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~ 456 (709)
T COG2274 377 LILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQ 456 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 5544333322222 4568899999999999999999999999999999999999999999999999999999987543
Q ss_pred Ccchh-cccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 611 QSMNI-RQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 611 ~~~~~-~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
+.+.. ...+ ..++.|+++|++|+|+.+++ ++|+|+||+|++||++||||+||||||||++.++|.++|.+|+|.-
T Consensus 457 ~~~~~~~~~~---~~~g~I~~~nvsf~y~~~~~-~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~ 532 (709)
T COG2274 457 EGDKTLIHLP---KLQGEIEFENVSFRYGPDDP-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILL 532 (709)
T ss_pred cccccccccc---ccCceEEEEEEEEEeCCCCc-chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 22221 1122 15688999999999987643 8999999999999999999999999999999999999999999843
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-30 Score=318.75 Aligned_cols=370 Identities=17% Similarity=0.116 Sum_probs=276.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 307 CYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLL 386 (1232)
Q Consensus 307 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l 386 (1232)
.+++.++...++.++..++..+.|++++.+++.+-.... ...-+.+++.+++..++..++.....+...+.+.++...+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS-VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667788888899999999999999999986542221 1223444555666666677777777778888999999999
Q ss_pred HHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 387 TAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW--FHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITV 464 (1232)
Q Consensus 387 ~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~--~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~~~~ 464 (1232)
...+|+|.++++.. ..+...+.+++|++++.++... +..+...++.++.. ++++..-.+.+++.++.+++.+
T Consensus 82 r~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~l~~ 155 (544)
T TIGR01842 82 NQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAVVLV 155 (544)
T ss_pred HHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999988752 2355678889999999886543 33344444433332 2333322333343333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 000904 465 LCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSP 544 (1232)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p 544 (1232)
.+.....+..++..++.++..+++.+.++|.++|+++||.|++|+.+.+++++..++..+...+.....+....+.....
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (544)
T TIGR01842 156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR 235 (544)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677788888899999999999999999999999999999999999888777666555555444444333222222
Q ss_pred --HHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCC
Q 000904 545 --VLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIE 622 (1232)
Q Consensus 545 --~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~ 622 (1232)
..+.++++|.+...++.+|++.+++++.++..+..|+..++.....+.++++|++||.++++.++..+... ..+ .
T Consensus 236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~--~ 312 (544)
T TIGR01842 236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PLP--E 312 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-CCC--C
Confidence 22345667888888899999999999999999999999999999999999999999999997654322111 111 1
Q ss_pred CCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 623 NVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 623 ~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.++.|+++|++|+|+++ ++++|+|+||++++||+++|+|++|||||||+++|+|+++|.+|++.
T Consensus 313 -~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 376 (544)
T TIGR01842 313 -PEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376 (544)
T ss_pred -CCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 33579999999999743 35899999999999999999999999999999999999999999874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-29 Score=316.98 Aligned_cols=382 Identities=14% Similarity=0.141 Sum_probs=285.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 303 TIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKV 382 (1232)
Q Consensus 303 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1232)
.+++.+++.++...+..++..++..+.|++++.+++.+.++... .....++..+++..++..++.....+...+++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 96 (582)
T PRK11176 18 PTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR-SVLKWMPLVVIGLMILRGITSFISSYCISWVSGKV 96 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777778888888888999999998876543211 11122233333344445555444555667788888
Q ss_pred HHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 383 RSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIM 461 (1232)
Q Consensus 383 R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~ 461 (1232)
...+...+|+|.++++.....+.+.|++++.++.|++++.+.. ..+..+...++.+++.+++++..-++.+++.+++++
T Consensus 97 ~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~ 176 (582)
T PRK11176 97 VMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAP 176 (582)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999998887778899999999999999998754 345556667777777777766654446666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000904 462 ITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFW 541 (1232)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~ 541 (1232)
+.+.+...+.+.+++..++.++..++..+...|.++|+++||.|++|+.+.++.++.-++-.+...|.....+....+..
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T PRK11176 177 IVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQ 256 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666778888888999999999999999999999999999999999988888776555444433333333332222221
Q ss_pred Hhh--HHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccC
Q 000904 542 SSP--VLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKG 619 (1232)
Q Consensus 542 ~~p--~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~ 619 (1232)
... ..+.++.++.+....+.++.+.+..+++++..+..|+..+......+.+++.+++||.++++.++.++..... .
T Consensus 257 ~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~-~ 335 (582)
T PRK11176 257 LIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRV-I 335 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcC-C
Confidence 111 2234456667777778999999998888899999999999999999999999999999999876432211111 1
Q ss_pred CCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 620 NIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 620 ~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
. . ..+.|+++|++|+|+++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|+|.-
T Consensus 336 ~-~-~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i 402 (582)
T PRK11176 336 E-R-AKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILL 402 (582)
T ss_pred C-C-CCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEE
Confidence 1 1 23469999999999753 468999999999999999999999999999999999999999999843
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=322.14 Aligned_cols=213 Identities=22% Similarity=0.392 Sum_probs=172.5
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeC-CCCChHhhh-c
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI-SKLGLHDLR-S 1061 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI-~~i~l~~LR-~ 1061 (1232)
-.++++|+++.-+.+ -..+++|||++++||.+||.|-.|-|-+-|+.+|.|+.+|.+|+|.++|.|+ ...+..+.| .
T Consensus 256 ~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 256 VVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred eEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 358999999875433 3579999999999999999999999999999999999999999999999997 677777766 5
Q ss_pred cEEEEccCCC----CCcccHHhccCC-------CCC---CCHHHHHHHHHHcCCcHHHHh---hccCCcccccCCCCCCC
Q 000904 1062 RFGIIPQDPT----LFNGTVRYNLDP-------LSQ---HTDQEIWEVLAKCHLGEAVRE---KENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1062 ~i~iVpQdP~----LF~gTIr~NLdp-------~~~---~sd~eI~~aL~~~~L~~~i~~---~p~gLdt~v~e~G~nLS 1124 (1232)
.++|||.|.. ..+-|+.+|+-+ |.. .+..++.+..++ .+++ .+.+.++++ .+||
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~-----li~~fdVr~~~~~~~a----~~LS 405 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE-----LIEEFDVRAPSPDAPA----RSLS 405 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHH-----HHHHcCccCCCCCcch----hhcC
Confidence 6999999984 457799999843 211 122333332221 1221 123333333 5799
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
||+.|++-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.|+.||-+++.+.. ||||.||.+|+++...
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~ 485 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccc
Confidence 999999999999999999999999999999999999988887754 58899999999999988 9999999999999877
Q ss_pred ChhH
Q 000904 1203 EPMK 1206 (1232)
Q Consensus 1203 ~p~~ 1206 (1232)
+|++
T Consensus 486 ~~~~ 489 (501)
T COG3845 486 PPEE 489 (501)
T ss_pred cccc
Confidence 7765
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=315.54 Aligned_cols=206 Identities=26% Similarity=0.364 Sum_probs=174.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH-hhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH-DLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~-~LR~~i 1063 (1232)
.++++|++.+|+ .-.+++||||+|++||..|+.|+||+|||||++.|+|+|+|++|+|.+||+.++--++. .+|..|
T Consensus 4 ~l~~~~itK~f~--~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFP--GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcC--CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 489999999997 34689999999999999999999999999999999999999999999999998766555 467889
Q ss_pred EEEccCCCCCcc-cHHhccCCCCCC------C----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLSQH------T----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~~~------s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
|+|.|++.|++. |+.||+-...+. + .+++.+..++.|| |-.+|..| ..||.|||||+-
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl-------~vdp~~~V----~dLsVG~qQRVE 150 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGL-------PVDPDAKV----ADLSVGEQQRVE 150 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCC-------CCCcccee----ecCCcchhHHHH
Confidence 999999999966 999999643321 2 2345555554443 23344444 469999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
|-+||++++++||||||||-|-+..-+.+.+++++.. .|+|||+|||+++.++. ||||-||.+||++..-+
T Consensus 151 IlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 151 ILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999988888888888754 58999999999999998 99999999999885544
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=302.62 Aligned_cols=183 Identities=21% Similarity=0.288 Sum_probs=149.8
Q ss_pred cceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEE-ECCeeCCCCChHhhhccEEEEccCCCCCcc-cHHh
Q 000904 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL-VDGIDISKLGLHDLRSRFGIIPQDPTLFNG-TVRY 1079 (1232)
Q Consensus 1002 vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~-IDG~dI~~i~l~~LR~~i~iVpQdP~LF~g-TIr~ 1079 (1232)
||+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|. ++|.++ .+.|++.+|.+ |+++
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 777533 13467778875 9999
Q ss_pred ccCCCC---CCCHHHHHHHH-HHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCH
Q 000904 1080 NLDPLS---QHTDQEIWEVL-AKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDN 1155 (1232)
Q Consensus 1080 NLdp~~---~~sd~eI~~aL-~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~ 1155 (1232)
|+.... ..+.+++.+.+ +..++.+ .++.. ...||+|||||++||||++++|++++|||||+++|.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLTQLEQ-------CYTDR----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhChhH-------Hhhch----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 996421 23344433332 3333322 23332 346999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1156 ATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1156 ~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
.+.+.+.+.|.+..+++|+|++||+++.+.. ||+|++|++|++++.|+-+++.
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 9999999988655567899999999999976 9999999999999999877774
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-29 Score=318.70 Aligned_cols=387 Identities=18% Similarity=0.165 Sum_probs=293.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 298 PSVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRL 377 (1232)
Q Consensus 298 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1232)
.+.+...++.+++.+....+..++..++..+.|++++.+++.+-.... ...-+.+++++++..++..+......+...+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~-~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG-LSTLSVLALAMLAVAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777788888888999999999999999999987643221 1223344555555556666666666677788
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 378 IGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAA 456 (1232)
Q Consensus 378 ~~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~g 456 (1232)
++.++...+...+|+|.++++.....+.++|++++.+ .|++.+.++.. .+-.+....+.+++.+++++..=++.+++.
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 284 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVV 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998877788999999999 69999988653 333333333334444445555434466666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 457 LVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1232)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~ 536 (1232)
++++++...+...+.+.+++..++.++..+++.+.+.|.++|+++||.++.|+.+.++..+.-++..+...+.....+..
T Consensus 285 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR01846 285 IGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIA 364 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777778888888889999999999999999999999999999999988888776665555555544444433
Q ss_pred HHHHhHhh--HHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcch
Q 000904 537 TFLFWSSP--VLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMN 614 (1232)
Q Consensus 537 ~~~~~~~p--~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 614 (1232)
..+..... ..+.++.+|.+.+..+.+|.+.+.+...+...+..|+..+......+.+++++++|+.++++.|+..+..
T Consensus 365 ~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 444 (694)
T TIGR01846 365 GQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA 444 (694)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 33222222 1233466788888888999999999999999999999999999999999999999999999875432211
Q ss_pred hcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 615 IRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 615 ~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
...+... ..+.|+++|++|+|+++ ++++|+|+||+|++||+++|+|++|||||||+++|+|+++|.+|+|.-
T Consensus 445 -~~~~~~~-~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~i 516 (694)
T TIGR01846 445 -GLAALPE-LRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLV 516 (694)
T ss_pred -CCCCCCC-CCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 1111111 34579999999999753 357999999999999999999999999999999999999999998853
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=297.85 Aligned_cols=209 Identities=24% Similarity=0.362 Sum_probs=181.7
Q ss_pred CCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh
Q 000904 977 PPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL 1056 (1232)
Q Consensus 977 ~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l 1056 (1232)
+..||....|+|++|++.=+.+.+.+.+|+||+|+.|+.+-|+|+||||||+|++.|.|+.+..+|++.--...-
T Consensus 425 ~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~----- 499 (659)
T KOG0060|consen 425 GKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG----- 499 (659)
T ss_pred cccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-----
Confidence 345677778999999998655466677889999999999999999999999999999999999999997533100
Q ss_pred HhhhccEEEEccCCCCCcccHHhccC-CCC-------CCCHHHHHHHHHHcCCcHHHHhhccCCccccc-CCCCCCChhH
Q 000904 1057 HDLRSRFGIIPQDPTLFNGTVRYNLD-PLS-------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVV-EDGSNWSMGQ 1127 (1232)
Q Consensus 1057 ~~LR~~i~iVpQdP~LF~gTIr~NLd-p~~-------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~-e~G~nLSgGQ 1127 (1232)
-+.+-|+||.|.+-.||+|+.+- |.. ..+|++|.+.|+.++|.+.++.. +|+|+++. +-.+.||+||
T Consensus 500 ---~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GE 575 (659)
T KOG0060|consen 500 ---PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGE 575 (659)
T ss_pred ---CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHH
Confidence 04589999999999999999873 421 35899999999999999877654 89997664 5577899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCC
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDG 1196 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G 1196 (1232)
+||+|+||.++.+|++-||||+||++|.+.|..+.+.+|+ .+.|.|+|.||-+..+.-|.++-|+.+
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~--~giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE--MGITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH--cCCeEEEeccHHHHHhhhhEEEEecCC
Confidence 9999999999999999999999999999999999999998 589999999999999999999999864
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=290.75 Aligned_cols=196 Identities=24% Similarity=0.321 Sum_probs=167.9
Q ss_pred eeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCC----CCChHhhhccEEEEccCCCCCcc-cHHh
Q 000904 1005 GISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS----KLGLHDLRSRFGIIPQDPTLFNG-TVRY 1079 (1232)
Q Consensus 1005 ~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~----~i~l~~LR~~i~iVpQdP~LF~g-TIr~ 1079 (1232)
+++|+.++.-.+||-|+||||||||++++.|+..|++|.|.+||.-+. .+.+..=+++||||+||.-||.. |||.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 678888887899999999999999999999999999999999997653 34455558899999999999965 9999
Q ss_pred ccCCCCCC-CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHH
Q 000904 1080 NLDPLSQH-TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158 (1232)
Q Consensus 1080 NLdp~~~~-sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~ 1158 (1232)
||...... +.++..++.+..|+.....+.| ..||||||||++|+||||.+|++|+||||-|+||....
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 99854433 3456666666667766666655 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1159 MILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1159 ~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
+.|.--|++..+ +--++.|||-++.+.. +|+|++|++|||..+|.-++.+..+
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 998877766543 4679999999999987 9999999999999999999998764
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=280.66 Aligned_cols=154 Identities=41% Similarity=0.602 Sum_probs=143.6
Q ss_pred EEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEc
Q 000904 988 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIP 1067 (1232)
Q Consensus 988 ~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVp 1067 (1232)
++|++++|.. .++++++|++|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++......+++++++|+|
T Consensus 2 ~~~~~~~~~~--~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 6799999953 36999999999999999999999999999999999999999999999999998877778889999999
Q ss_pred cCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000904 1068 QDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLD 1147 (1232)
Q Consensus 1068 QdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILD 1147 (1232)
| ||+|||||++||||++.+|++++||
T Consensus 80 q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 80 Q------------------------------------------------------LSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred e------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9 9999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1148 EATASIDNATDMILQKTIRAEFA-DCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1148 EaTs~LD~~T~~~Iq~~L~~~~~-~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
|||++||.++...+.+.|++..+ ++|++++||+++.+.+ ||++++|++|+
T Consensus 106 Ep~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 106 EPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999987433 5899999999999999 59999999985
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=337.76 Aligned_cols=199 Identities=23% Similarity=0.302 Sum_probs=157.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. ..+|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.++|. .+++|
T Consensus 2 i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-----------~~i~~ 68 (638)
T PRK10636 2 IVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-----------WQLAW 68 (638)
T ss_pred EEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 689999999963 46999999999999999999999999999999999999999999999983 24888
Q ss_pred EccCCCCCcccHHhccCC---------------------------------CCC-CCHHHHHHHHHHcCCcHHHHhhccC
Q 000904 1066 IPQDPTLFNGTVRYNLDP---------------------------------LSQ-HTDQEIWEVLAKCHLGEAVREKENG 1111 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp---------------------------------~~~-~sd~eI~~aL~~~~L~~~i~~~p~g 1111 (1232)
++|++..+..|+.+.+.. .+. ..++++.++|+.+|+.+
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~-------- 140 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN-------- 140 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc--------
Confidence 888764444444332210 000 01233444555554431
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeE
Q 000904 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMV 1190 (1232)
Q Consensus 1112 Ldt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrV 1190 (1232)
........+||||||||++|||||+.+|+||+|||||++||.++...+.+.|++. ++|||+||||++.+.. ||+|
T Consensus 141 --~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i 216 (638)
T PRK10636 141 --EQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKI 216 (638)
T ss_pred --hhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEE
Confidence 1122234579999999999999999999999999999999999999999999873 5799999999999987 8999
Q ss_pred EEEeCCEEEE-ecChhHHHh
Q 000904 1191 LAISDGKLAE-YDEPMKLMK 1209 (1232)
Q Consensus 1191 lVL~~G~vvE-~g~p~~Ll~ 1209 (1232)
++|++|++.+ .|+++....
T Consensus 217 ~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 217 IHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred EEEeCCEEEEecCCHHHHHH
Confidence 9999999986 466666554
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-28 Score=306.55 Aligned_cols=375 Identities=14% Similarity=0.168 Sum_probs=275.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 304 IIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVR 383 (1232)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 383 (1232)
.++.+++.++...++.++..++..+.|++++.+++.+..++. ...+++..++..++..+...-..+...+++.++|
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD----VLPTLALWAGFGVFNTIAYVLVAREADRLAHGRR 88 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888889999999999999999999999997654321 1111112222333444444444566778888999
Q ss_pred HHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000904 384 SLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGL-ATIAALVVIM 461 (1232)
Q Consensus 384 ~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~~~~ 461 (1232)
..+...+|+|.++++....++.++|++++.++.|++.+.++.. .+..+....+.+++++++++. +.| .+++.+++++
T Consensus 89 ~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~l~~~~ 167 (585)
T TIGR01192 89 ATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFA-MDWRLSIVLMVLGI 167 (585)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 9999999999999998877788899999999999999976543 333444445555444444433 233 4555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 000904 462 ITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNV----EYKWLSAVQLRKAYNT 537 (1232)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~----E~~~l~k~~~~~~~~~ 537 (1232)
+...+...+.++..+.+++..+..++..+.+.|.++||++||.|+.|+.+.+++.+.-++ +.+..+..........
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (585)
T TIGR01192 168 LYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNR 247 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777888888888888899999999999999999999999999888776664443 3322222222222222
Q ss_pred HHHhHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcc
Q 000904 538 FLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQ 617 (1232)
Q Consensus 538 ~~~~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~ 617 (1232)
++... ..+.++.+|.+.+..+.+|.+.+++.+.++..+..|+..+...+..+.+++++++|+.++++.++........
T Consensus 248 ~~~~~--~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~ 325 (585)
T TIGR01192 248 MASTI--SMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADA 325 (585)
T ss_pred HHHHH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccC
Confidence 22222 1234456788888888999999999999999999999999999999999999999999999765322111110
Q ss_pred cCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 618 KGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 618 ~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.+... ..+.|+++|++|+|+++ +++|+|+||++++||+++|+|+||||||||++.|+|+++|.+|++.
T Consensus 326 ~~~~~-~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 393 (585)
T TIGR01192 326 PELPN-VKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393 (585)
T ss_pred CCCCC-CCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence 01111 23469999999999742 4789999999999999999999999999999999999999999884
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-32 Score=274.16 Aligned_cols=203 Identities=25% Similarity=0.330 Sum_probs=169.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
+..++++.+|......+|+|+|++|.+||.+.++||||||||||++++.|+.+|+.|+|.+||..|..-+ ..=|+
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-----aergv 78 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----AERGV 78 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-----cccee
Confidence 4567899999654456999999999999999999999999999999999999999999999999887654 34689
Q ss_pred EccCCCCCc-ccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFN-GTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
|+||+-|+. -|+.+|+... .... .+...+.|..+||.++-.+.+ -+||||||||+.|||||
T Consensus 79 VFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----------~qLSGGmrQRvGiARAL 147 (259)
T COG4525 79 VFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI-----------WQLSGGMRQRVGIARAL 147 (259)
T ss_pred EeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccce-----------EeecchHHHHHHHHHHh
Confidence 999999885 5899998631 1111 233567788888877653332 37999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEe--CCEEEEecCh
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAIS--DGKLAEYDEP 1204 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~--~G~vvE~g~p 1204 (1232)
.-+|+.|+||||.++||.-|.+.+|+.|-+.. .++-+++|||+++...- +++++||+ .|||++.-+|
T Consensus 148 a~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 148 AVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred hcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 99999999999999999999999999987643 47889999999987665 89999997 5899986444
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-32 Score=285.03 Aligned_cols=155 Identities=26% Similarity=0.283 Sum_probs=136.6
Q ss_pred EeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEcc
Q 000904 989 CDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQ 1068 (1232)
Q Consensus 989 ~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQ 1068 (1232)
.|++++|.. ..+++++ ++|++||++||+|+||||||||+++|.|+++|++|+|.+||. .++++||
T Consensus 4 ~~l~~~~~~--~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~q 68 (177)
T cd03222 4 PDCVKRYGV--FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKPQ 68 (177)
T ss_pred CCeEEEECC--EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEcc
Confidence 478899953 4688884 999999999999999999999999999999999999999995 3789999
Q ss_pred CCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000904 1069 DPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDE 1148 (1232)
Q Consensus 1069 dP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDE 1148 (1232)
++. ||+|||||++||||++++|++++|||
T Consensus 69 ~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLDE 97 (177)
T cd03222 69 YID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDE 97 (177)
T ss_pred cCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 763 89999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecChhhhhh-cCeEEEEeCCEEEE--ecChhHHHh
Q 000904 1149 ATASIDNATDMILQKTIRAEF-A-DCTVITVAHRIPTVMD-CTMVLAISDGKLAE--YDEPMKLMK 1209 (1232)
Q Consensus 1149 aTs~LD~~T~~~Iq~~L~~~~-~-~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE--~g~p~~Ll~ 1209 (1232)
||++||.++.+.+.+.|++.. + +.|+|+|||+++.+.+ ||++++|+++-.+- +|.|..-.+
T Consensus 98 Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 163 (177)
T cd03222 98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTRE 163 (177)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhH
Confidence 999999999999999998753 3 3899999999999986 99999999876552 367765443
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-32 Score=280.00 Aligned_cols=203 Identities=26% Similarity=0.359 Sum_probs=168.0
Q ss_pred CCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCC--CC-
Q 000904 997 PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPT--LF- 1073 (1232)
Q Consensus 997 ~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~--LF- 1073 (1232)
+..+++|+++|++|+.||.|-|+|.||||||||++++.|-+.|++|+|.|||+|+.+++.+..-..++-|+|||. .+
T Consensus 16 ~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 345679999999999999999999999999999999999999999999999999999999999899999999995 33
Q ss_pred cccHHhccCCCC---C---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000904 1074 NGTVRYNLDPLS---Q---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLD 1147 (1232)
Q Consensus 1074 ~gTIr~NLdp~~---~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILD 1147 (1232)
+-||.||+.... + .+..--. =.+....+.+..++.||+-.+++.-.-|||||||-++|+-|.+++|+||+||
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~--~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLD 173 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNE--RRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLD 173 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhH--HHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEec
Confidence 559999985321 0 1111000 0112233456667788888888887889999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHH--hcCCcEEEEEecChhhhhhc-CeEEEEeCCEEEEe
Q 000904 1148 EATASIDNATDMILQKTIRA--EFADCTVITVAHRIPTVMDC-TMVLAISDGKLAEY 1201 (1232)
Q Consensus 1148 EaTs~LD~~T~~~Iq~~L~~--~~~~~TVI~IAHrl~ti~~~-DrVlVL~~G~vvE~ 1201 (1232)
|=||+|||.+.+.+.+.=++ +..+-|.++|||.++-..+| +|.++|++|+|+-+
T Consensus 174 EHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 174 EHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred chhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 99999999998888765443 12467999999999998886 89999999999854
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-28 Score=305.27 Aligned_cols=381 Identities=16% Similarity=0.169 Sum_probs=267.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 304 IIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTE-GKAG--FKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGL 380 (1232)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~-~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1232)
..+.+++.++++.++.++..++....|.+++.+++..- .+.. ........++++++..++..++..-..+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888899999999999999999999998542 2211 00111112223333445555555555667778888
Q ss_pred HHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000904 381 KVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGL-ATIAALV 458 (1232)
Q Consensus 381 ~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~ 458 (1232)
++...+-..+|+|.++++....++.++|++++.+++|++++.++.. .+..+....+.+++++++++.. .| .+++.++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~l~~~~ 168 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFF-DLTLALTLGG 168 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999988877788999999999999999998764 3444444555555554444432 32 3333322
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 459 VIMITVL-CNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNT 537 (1232)
Q Consensus 459 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~ 537 (1232)
++++..+ +...+.++.++..++..+..++-.+.+.|.++|+++||.|+.|+.+.++..+..++-.+...+.....+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (574)
T PRK11160 169 ILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQ 248 (574)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 234556777888888889999999999999999999999999999888877765554444444433333322
Q ss_pred HHHhHhh--HHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcch
Q 000904 538 FLFWSSP--VLVSTATFGACYFLNVPLYASNVFTFVATLRLV-QDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMN 614 (1232)
Q Consensus 538 ~~~~~~p--~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l-~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 614 (1232)
.+..... ..+.++.+|.+. .++.++.+..++.+.+..++ ..|+..++..+..+.++++|++||.++++.++..+..
T Consensus 249 ~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~ 327 (574)
T PRK11160 249 ALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP 327 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 2222111 122334555555 46678888877666554333 4588888899999999999999999999875421111
Q ss_pred hcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 615 IRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 615 ~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
....+. . ..+.|+++|++|+|+++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.-
T Consensus 328 ~~~~~~-~-~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i 399 (574)
T PRK11160 328 TTSTAA-A-DQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL 399 (574)
T ss_pred cccCCC-C-CCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 011111 1 34579999999999753 357999999999999999999999999999999999999999998843
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-28 Score=305.35 Aligned_cols=377 Identities=18% Similarity=0.209 Sum_probs=270.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 303 TIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEG-YVLAITLFVAKILESLSQRQWYFRSRLIGLK 381 (1232)
Q Consensus 303 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1232)
...+.+++.++...++.++..++..+.|+++..+++.+.......... ..+++++++..++..+......+...+.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVG 95 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777888888999999999999999999998764322211111 2223334444555566555566677788888
Q ss_pred HHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000904 382 VRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWF-HQIWTTSVQLCIALIILFHAVGL-ATIAALVV 459 (1232)
Q Consensus 382 ~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~-~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~~ 459 (1232)
+...+...+|+|.++.+.....+.++|+++|.++.|++++.++.... ..+....+.+++++.+++. ++| .+++.+++
T Consensus 96 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~li~l~~ 174 (592)
T PRK10790 96 VVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFS-LDWRMALVAIMI 174 (592)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 88889999999999988777777899999999999999998865443 3333333333333333333 344 44455544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000904 460 IMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAY---- 535 (1232)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~---- 535 (1232)
+++.+.+.....+...+..++..+..++-.+..+|.++|+++||.|+.|+.+.++..+..++..+...+.....+.
T Consensus 175 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (592)
T PRK10790 175 FPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRP 254 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556667777778888888888889999999999999999999999999887665544332222222211
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchh
Q 000904 536 NTFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNI 615 (1232)
Q Consensus 536 ~~~~~~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 615 (1232)
...+......++.++.++ + ...+.++.+.++..+.++..+..|+..++.....+.++++|.+||.++++.++.+....
T Consensus 255 ~~~~~~~~~~~~~~~~~~-~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 332 (592)
T PRK10790 255 LLSLFSALILCGLLMLFG-F-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND 332 (592)
T ss_pred HHHHHHHHHHHHHHHHHH-H-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC
Confidence 111111111122122222 2 35677999999999999999999999999999999999999999999998654322211
Q ss_pred cccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 616 RQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 616 ~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
..+ . ..+.|+++|++|+|+. ++++|+|+||++++||+++|+|++|||||||+++|+|+++|.+|.+.
T Consensus 333 -~~~--~-~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 333 -DRP--L-QSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred -ccC--C-CCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 111 1 2356999999999974 35799999999999999999999999999999999999999999874
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=281.51 Aligned_cols=160 Identities=22% Similarity=0.273 Sum_probs=133.6
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHh
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRY 1079 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~ 1079 (1232)
.++|+|+||+|++||+++|+||||||||||+++++ +++|+|.++|.. ... .|.++++++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 36899999999999999999999999999999986 369999998752 221 2456888887
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccC--CCEEEEeccCCCCCHHH
Q 000904 1080 NLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRR--SRILVLDEATASIDNAT 1157 (1232)
Q Consensus 1080 NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~--~kILILDEaTs~LD~~T 1157 (1232)
.++|++.++.+. .......+||+|||||++||||++++ |++++|||||++||.++
T Consensus 68 -------------~~~l~~~~L~~~----------~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 -------------LQFLIDVGLGYL----------TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred -------------HHHHHHcCCCcc----------ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 346676665432 13345578999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhc-CCcEEEEEecChhhhhhcCeEEEEeC------CEEEEec
Q 000904 1158 DMILQKTIRAEF-ADCTVITVAHRIPTVMDCTMVLAISD------GKLAEYD 1202 (1232)
Q Consensus 1158 ~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~~------G~vvE~g 1202 (1232)
.+.+.+.|++.. .++|||+|||+++.+..||++++|++ |++||+|
T Consensus 125 ~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 176 (176)
T cd03238 125 INQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176 (176)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCCCCcEEEecC
Confidence 999999998754 47999999999999888999999955 6677765
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-28 Score=303.40 Aligned_cols=375 Identities=17% Similarity=0.161 Sum_probs=271.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 304 IIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVR 383 (1232)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 383 (1232)
.++.+++.+++..++.++..++..+.|+++..+++.+..+. . .+. +++.+++..++..+......+...++..++|
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-D--IFP-LLAAWAGFGLFNIIAGVLVARHADRLAHRRR 88 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888999999999999999999998775431 1 111 1112222222223333333455677888999
Q ss_pred HHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000904 384 SLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGL-ATIAALVVIM 461 (1232)
Q Consensus 384 ~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~~~~ 461 (1232)
..+...+|+|.++++.....+.+.|++++.++.|++.+.+... .+..+-...+-.++.+++++. ++| .+++.+++++
T Consensus 89 ~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~l~~~~ 167 (588)
T PRK13657 89 LAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALF-MNWRLSLVLVVLGI 167 (588)
T ss_pred HHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 9999999999999988777788999999999999999875432 333322222222333333333 333 4455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 000904 462 ITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEIL----RNVEYKWLSAVQLRKAYNT 537 (1232)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~----R~~E~~~l~k~~~~~~~~~ 537 (1232)
+...+...+.+.+.+.+++.++..++..+...|.++|+++||.|+.|+.+.+++.+. ++.+.+..+..........
T Consensus 168 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK13657 168 VYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNR 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888999999999999999999999999999999999999877765554 3333333333333322222
Q ss_pred HHHhHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcc
Q 000904 538 FLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQ 617 (1232)
Q Consensus 538 ~~~~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~ 617 (1232)
++.. -..+.+++++.+.+..+.+|.+.+++++.++..+..|+..+...+..+.+++.+++|+.++++.++..+.....
T Consensus 248 ~~~~--~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 325 (588)
T PRK13657 248 AAST--ITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGA 325 (588)
T ss_pred HHHH--HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC
Confidence 2211 23345567788888888999999999999999999999999999999999999999999999764422111111
Q ss_pred cCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 618 KGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 618 ~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.+... ..+.|+++|++|+|+++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|.+.
T Consensus 326 ~~~~~-~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 326 IDLGR-VKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred CCcCC-CCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 11111 23579999999999742 4799999999999999999999999999999999999999999874
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=296.99 Aligned_cols=193 Identities=24% Similarity=0.348 Sum_probs=167.2
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
..+++.+|+|.|.|+.++.++++++.++.-+++++||+||.||||+++++.+-.+|..|.+-+.+ |.+|
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 46999999999998877899999999999999999999999999999999999999999998877 7899
Q ss_pred EEEccCCCCC-cccHHhccC----CCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc
Q 000904 1064 GIIPQDPTLF-NGTVRYNLD----PLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL 1138 (1232)
Q Consensus 1064 ~iVpQdP~LF-~gTIr~NLd----p~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL 1138 (1232)
+|..|..+-| +-.+- -+| -+...+++|+++.|...|+...+...+- ..||||||-|+++|-...
T Consensus 430 ~~f~Qhhvd~l~~~v~-~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si----------~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVN-AVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSI----------ASLSGGQKSRVAFAACTW 498 (582)
T ss_pred cchhHhhhhHHHHHhH-HHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccc----------cccCCcchhHHHHHHHhc
Confidence 9999987533 22211 111 1223489999999999998876655431 369999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1139 ~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE 1200 (1232)
.+|.+|||||||++||.++-..+-++|+. |. .-||+||||.+++.. |+.++|.+||+|.-
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~-F~-GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKN-FN-GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHh-cC-CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999999999999985 54 459999999999988 99999999999986
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=330.49 Aligned_cols=198 Identities=25% Similarity=0.329 Sum_probs=156.9
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|. ..++
T Consensus 3 ~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-----------~~~~ 69 (635)
T PRK11147 3 LISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-----------LIVA 69 (635)
T ss_pred EEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-----------CEEE
Confidence 3789999999963 46999999999999999999999999999999999999999999999872 1367
Q ss_pred EEccCCCC-CcccHHhccCC-C---------------------------------------CC-CCHHHHHHHHHHcCCc
Q 000904 1065 IIPQDPTL-FNGTVRYNLDP-L---------------------------------------SQ-HTDQEIWEVLAKCHLG 1102 (1232)
Q Consensus 1065 iVpQdP~L-F~gTIr~NLdp-~---------------------------------------~~-~sd~eI~~aL~~~~L~ 1102 (1232)
+++|+|.. ..+++.+++.. . +. ..++++.++|+..++.
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 149 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC
Confidence 77877632 22454443210 0 00 0122333444444332
Q ss_pred HHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 000904 1103 EAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIP 1182 (1232)
Q Consensus 1103 ~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ 1182 (1232)
.......||||||||++|||||+.+|+||||||||++||.++.+.+.+.|++. +.|||+||||++
T Consensus 150 -------------~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~ 214 (635)
T PRK11147 150 -------------PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRS 214 (635)
T ss_pred -------------CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHH
Confidence 12334689999999999999999999999999999999999999999999874 469999999999
Q ss_pred hhhh-cCeEEEEeCCEEEEe-cChhHHHhh
Q 000904 1183 TVMD-CTMVLAISDGKLAEY-DEPMKLMKR 1210 (1232)
Q Consensus 1183 ti~~-~DrVlVL~~G~vvE~-g~p~~Ll~~ 1210 (1232)
.+.. ||+|++|++|+++.+ |++.+.++.
T Consensus 215 ~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~ 244 (635)
T PRK11147 215 FIRNMATRIVDLDRGKLVSYPGNYDQYLLE 244 (635)
T ss_pred HHHHhcCeEEEEECCEEEEecCCHHHHHHH
Confidence 9987 899999999999865 788776654
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=316.74 Aligned_cols=209 Identities=28% Similarity=0.353 Sum_probs=160.9
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|+ ..++|+|+|+++.+|+|+|||||||+|||||+++|.|..+|++|+|.+++- -+++
T Consensus 3 ~i~~~~ls~~~g--~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 3 MITLENLSLAYG--DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred eEEEeeeEEeeC--CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 488999999994 457999999999999999999999999999999999999999999999861 3799
Q ss_pred EEccCCCCCcc-cHHhccCCCCC-C--CH------------------HHHHHHHHHcCCc---HHHHhhcc--CCccccc
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPLSQ-H--TD------------------QEIWEVLAKCHLG---EAVREKEN--GLDSLVV 1117 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~~~-~--sd------------------~eI~~aL~~~~L~---~~i~~~p~--gLdt~v~ 1117 (1232)
|++|+|.+.++ ||++.+..... . -. +++.+.++...-+ ..+...-. |++.. .
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~ 148 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D 148 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c
Confidence 99999998865 88876532110 0 00 1111111111111 11111111 22222 2
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCC
Q 000904 1118 EDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDG 1196 (1232)
Q Consensus 1118 e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G 1196 (1232)
..-.+||||||.|++|||||+.+|+||+|||||++||.++.+-+.+.|.+ +++ |||+||||.+++.. |++|+-+|.|
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V~t~I~~ld~g 226 (530)
T COG0488 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNVATHILELDRG 226 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHHhhheEEecCC
Confidence 23357999999999999999999999999999999999999999999984 556 99999999999988 9999999999
Q ss_pred EEEEec-ChhHHHh
Q 000904 1197 KLAEYD-EPMKLMK 1209 (1232)
Q Consensus 1197 ~vvE~g-~p~~Ll~ 1209 (1232)
++..|. ..+.-++
T Consensus 227 ~l~~y~Gny~~~~~ 240 (530)
T COG0488 227 KLTPYKGNYSSYLE 240 (530)
T ss_pred ceeEecCCHHHHHH
Confidence 998764 4444443
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=277.11 Aligned_cols=206 Identities=21% Similarity=0.300 Sum_probs=171.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh-HhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL-HDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-~~LR~~i 1063 (1232)
-|+++||+++|. .+++|+|||++|++||+.+|+|+||||||||++++.+-+.|++|.+.+-|....+.+. .++|++|
T Consensus 31 li~l~~v~v~r~--gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 31 LIELKNVSVRRN--GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred eEEecceEEEEC--CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHh
Confidence 599999999995 4679999999999999999999999999999999999999999999999999988887 9999999
Q ss_pred EEEccCC---CCCcccHHhccC--------CCC-CCCHH---HHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1064 GIIPQDP---TLFNGTVRYNLD--------PLS-QHTDQ---EIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1064 ~iVpQdP---~LF~gTIr~NLd--------p~~-~~sd~---eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
|+|+-+- +.-+.++|+-+- .+. .++++ +....|+.+++.+. .+.|. ..||.|||
T Consensus 109 G~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~l-a~r~~----------~~LS~Ge~ 177 (257)
T COG1119 109 GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHL-ADRPF----------GSLSQGEQ 177 (257)
T ss_pred CccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhh-ccCch----------hhcCHhHH
Confidence 9998432 222445554431 122 34443 35667788877663 33333 37999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC---CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA---DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~---~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
||+-|||||+++|++|||||||++||....+.+.+.|.+... +.|+|+|||+.+.+.. .++++.+++|+++..|.
T Consensus 178 rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 178 RRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999888888887542 4689999999999887 58999999999988763
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=267.86 Aligned_cols=215 Identities=25% Similarity=0.379 Sum_probs=187.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECC-eeCCCCChHhh-hcc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG-IDISKLGLHDL-RSR 1062 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG-~dI~~i~l~~L-R~~ 1062 (1232)
.++++||+++|. .-.+|+++||++.+||--.|+||||+||||++.++.|-.+|++|++++|| .||++++-++. |..
T Consensus 5 iL~~~~vsVsF~--GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 5 ILYLDGVSVSFG--GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred eEEEeceEEEEc--ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 478899999995 34699999999999999999999999999999999999999999999999 99999998876 667
Q ss_pred EEEEccCCCCCcc-cHHhccCCC------------CCC---CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChh
Q 000904 1063 FGIIPQDPTLFNG-TVRYNLDPL------------SQH---TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMG 1126 (1232)
Q Consensus 1063 i~iVpQdP~LF~g-TIr~NLdp~------------~~~---sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgG 1126 (1232)
||==+|.|..|+. ||++||+.. ... ..++|.+.|+..+|.+..... ..+||.|
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~-----------A~~LSHG 151 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL-----------AALLSHG 151 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh-----------hhhhccc
Confidence 9999999999965 999999631 111 223688999999888765443 2479999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPM 1205 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~ 1205 (1232)
|||++-|+..+..+|++|+||||+|++-.+..+..-+.|++....++|++|-||+.+++. +|+|-||.+|.|...|+-+
T Consensus 152 qKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld 231 (249)
T COG4674 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD 231 (249)
T ss_pred hhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHH
Confidence 999999999999999999999999999665556667777777778999999999999998 8999999999999999999
Q ss_pred HHHhhcC
Q 000904 1206 KLMKREG 1212 (1232)
Q Consensus 1206 ~Ll~~~~ 1212 (1232)
++-++++
T Consensus 232 ~v~~dp~ 238 (249)
T COG4674 232 EVQNDPK 238 (249)
T ss_pred HhhcCcc
Confidence 9877653
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=347.85 Aligned_cols=211 Identities=21% Similarity=0.265 Sum_probs=175.5
Q ss_pred eEEEEeeEeEecC-----------CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC--CccEEEECCeeC
Q 000904 985 KVDICDLQIRYRP-----------DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP--AGGKILVDGIDI 1051 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~-----------~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep--~~G~I~IDG~dI 1051 (1232)
.+.++||++.++. +...+|+|||+++++||.+||+|+||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6999999988741 223699999999999999999999999999999999999873 689999999886
Q ss_pred CCCChHhhhccEEEEccCCCCCc-ccHHhccCCC------CCCCHH----HHHHHHHHcCCcHHHHhhccCCcccccCCC
Q 000904 1052 SKLGLHDLRSRFGIIPQDPTLFN-GTVRYNLDPL------SQHTDQ----EIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120 (1232)
Q Consensus 1052 ~~i~l~~LR~~i~iVpQdP~LF~-gTIr~NLdp~------~~~sd~----eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G 1120 (1232)
.+ ...|+.++|++|++.++. .||+|||... ...+++ .+.++++..+|.+. .|+.+|..+
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 43 456788999999998775 5999998521 122322 36788888888653 345555433
Q ss_pred -CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh-h-hhcCeEEEEeC-
Q 000904 1121 -SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPT-V-MDCTMVLAISD- 1195 (1232)
Q Consensus 1121 -~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~t-i-~~~DrVlVL~~- 1195 (1232)
..||||||||++|||+|+.+|+||+|||||++||..+...+.+.|++.. .++|||+++|+++. + ..+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6799999999999999999999999999999999999999999998853 47899999999984 4 45999999996
Q ss_pred CEEEEecChh
Q 000904 1196 GKLAEYDEPM 1205 (1232)
Q Consensus 1196 G~vvE~g~p~ 1205 (1232)
|+++.+|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-27 Score=295.31 Aligned_cols=374 Identities=18% Similarity=0.113 Sum_probs=253.7
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 304 III-CYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKV 382 (1232)
Q Consensus 304 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1232)
+++ .+++.++++.++.++..++....|.+++.+++...... . ....+.+++++ +..++..-..+...+.+.++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~--~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 84 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG--Q-GSLFSFGGLCL---LALLFRIGADIFPAYAGMHI 84 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--c-hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 556 77888999999999999999999999998875321110 0 11111112222 22233333444566778888
Q ss_pred HHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000904 383 RSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGL-ATIAALVVIM 461 (1232)
Q Consensus 383 R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~~~~ 461 (1232)
...+...+|+|.++++.....++++|++++.+++|++.+.++...+..+....+.+++++++++.. .| .+++.+++++
T Consensus 85 ~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~L~li~l~~~~ 163 (555)
T TIGR01194 85 IANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYL-SVPMFAITISAII 163 (555)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHH
Confidence 888888899999999887777789999999999999999988765555555555555555555443 33 4444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 462 ITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWET--HFKNAIEILRNVEYKWLSAVQLRKAYNTFL 539 (1232)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~--~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~ 539 (1232)
+.+.+..+..++..+...+..+..++..+.+.|.++|+++||.|+.|+ ...+++.+.-++-.+.-.+..........+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (555)
T TIGR01194 164 IGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENF 243 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556677777788888888999999999999999999999854 333333332222111111111111111111
Q ss_pred HhHhhHHHHHHHHHHHHHh---CCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcch--
Q 000904 540 FWSSPVLVSTATFGACYFL---NVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMN-- 614 (1232)
Q Consensus 540 ~~~~p~~v~~~tf~~~~~~---~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~-- 614 (1232)
.. ++..+.++.+++. .+.+|.+++++.+.+...+..|+..+...+..+.++++|++||.++++.++.++..
T Consensus 244 ~~----~~~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~ 319 (555)
T TIGR01194 244 GQ----LLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELE 319 (555)
T ss_pred HH----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 11 1111111211111 25789999999998899999999999999999999999999999998642111000
Q ss_pred -h--ccc--CCCCCCcceEEEEeeEEEecCCC--CCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccc
Q 000904 615 -I--RQK--GNIENVNHVISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687 (1232)
Q Consensus 615 -~--~~~--~~~~~~~~~I~i~~~sfsw~~~~--~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v 687 (1232)
. ... .......+.|+++|++|+|++.+ ++++|+|+||++++||+++|+||+|||||||+++|+|+++|++|++
T Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i 399 (555)
T TIGR01194 320 LSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI 399 (555)
T ss_pred ccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 0 000 00000235799999999997532 2479999999999999999999999999999999999999999988
Q ss_pred c
Q 000904 688 L 688 (1232)
Q Consensus 688 ~ 688 (1232)
.
T Consensus 400 ~ 400 (555)
T TIGR01194 400 L 400 (555)
T ss_pred E
Confidence 4
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=327.10 Aligned_cols=192 Identities=23% Similarity=0.274 Sum_probs=158.8
Q ss_pred eeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEE-----------ECCeeCCCCChH-
Q 000904 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL-----------VDGIDISKLGLH- 1057 (1232)
Q Consensus 990 nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~-----------IDG~dI~~i~l~- 1057 (1232)
+++.+|+++ ..+|++++ ++++||.+||+|+||||||||+++|.|+++|++|+|. ++|.|+.++...
T Consensus 78 ~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 78 EPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred CceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 478999753 35899999 9999999999999999999999999999999999998 899888654211
Q ss_pred -hhhcc----EEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1058 -DLRSR----FGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1058 -~LR~~----i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
..+.+ +++++|.|.+|.+|+++|+.... ..+++.++++..++.+.... ...+||||||||++
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~~~~-----------~~~~LSgGe~qrv~ 222 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENILDR-----------DISELSGGELQRVA 222 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 11223 44555667788899999997421 23567888888887643222 23579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCC
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDG 1196 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G 1196 (1232)
|||||+++|++|+||||||+||..+...+.+.|++..+++|||+|+||++.+.. ||+|++|++|
T Consensus 223 ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 223 IAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999986458899999999999987 8999999863
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=263.21 Aligned_cols=214 Identities=26% Similarity=0.306 Sum_probs=181.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc--cCCccEEEECCeeCCCCChHhh-hc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV--EPAGGKILVDGIDISKLGLHDL-RS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~L-R~ 1061 (1232)
.++++|++++-.+. +.+|||||++|++||..+|.||||||||||.++|+|.- ++++|+|.+||+||.+++.++. |.
T Consensus 3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 47889999887532 47999999999999999999999999999999999975 8899999999999999998875 66
Q ss_pred cEEEEccCCCCCcc-cHHhccCC-----CC-----CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1062 RFGIIPQDPTLFNG-TVRYNLDP-----LS-----QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~g-TIr~NLdp-----~~-----~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
-|.+-+|+|.=++| |+.+-|.- .+ ..-.+++.++++..++++...+. .|. ..||||||.|
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R------~vN---~GFSGGEkKR 152 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER------YVN---EGFSGGEKKR 152 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc------ccC---CCcCcchHHH
Confidence 79999999998888 55543321 00 12256788999999998844333 233 3699999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh--cCeEEEEeCCEEEEecChhHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD--CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~--~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
.-|+-+++.+|++.|||||-|+||...-+.|-+.+++.. +++++++|||.-..... .|+|-||-+|+|+..|.| +|
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH
Confidence 999999999999999999999999999999999988754 48899999999888766 499999999999999999 77
Q ss_pred Hh
Q 000904 1208 MK 1209 (1232)
Q Consensus 1208 l~ 1209 (1232)
..
T Consensus 232 ~~ 233 (251)
T COG0396 232 AE 233 (251)
T ss_pred HH
Confidence 54
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=346.37 Aligned_cols=200 Identities=21% Similarity=0.212 Sum_probs=167.6
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc----cCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCc-
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV----EPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFN- 1074 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~----ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~- 1074 (1232)
..+|+|+|+++++||.++|+||||||||||+++|.|+. .|.+|+|.+||.++.+.. +..|++++||+|++.++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 35899999999999999999999999999999999986 578999999999986554 346778999999998775
Q ss_pred ccHHhccCCC-------C---CCCHHH-----HHHHHHHcCCcHHHHhhccCCcccccC-CCCCCChhHHHHHHHHHHHc
Q 000904 1075 GTVRYNLDPL-------S---QHTDQE-----IWEVLAKCHLGEAVREKENGLDSLVVE-DGSNWSMGQRQLFCLGRALL 1138 (1232)
Q Consensus 1075 gTIr~NLdp~-------~---~~sd~e-----I~~aL~~~~L~~~i~~~p~gLdt~v~e-~G~nLSgGQRQrl~LARALL 1138 (1232)
-||+||+... . ..+.+| +.++++..+|.+ -.|+.+|+ ....||||||||++|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH-------TRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc-------ccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 5999998531 0 122222 234677777753 34566654 35689999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCh-hhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRI-PTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1139 ~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl-~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
.+|+||+|||||++||+.+...+.+.|++.. .++|+|+++|++ +.+.+ +|+|++|++|+++.+|+++++
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 9999999999999999999999999999854 378999999997 56655 999999999999999999887
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-26 Score=287.33 Aligned_cols=369 Identities=15% Similarity=0.125 Sum_probs=246.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 300 VLRTIIICYWRDIFMSGFFALLKVLTLSAG-PLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLI 378 (1232)
Q Consensus 300 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1232)
+++.+++.+++.++...++.++..++..+. |++.+.+++.+.. . ...-+.+++.+++..++..+ ..+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-S--LLVLPEFLGLLLLLMAVTLG----SQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c--chHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 466777888888888888889988888874 6777888876532 1 11111111112222222222 22333445
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 379 GLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALV 458 (1232)
Q Consensus 379 ~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~ 458 (1232)
+.++...+-..+|+|.++++....+++++|+++|.++.|++.+..+...+..++...+.+++++++++..=.+.+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 55555556666777777777666667889999999999999998876667777888888888877777653446666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhc--hhHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000904 459 VIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYA--WETHFKNA----IEILRNVEYKWLSAVQLR 532 (1232)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~--wE~~f~~~----i~~~R~~E~~~l~k~~~~ 532 (1232)
++++.+.+...+.++..+..++.++..++..+..+|.++|++++++.. .++.+.++ .++.++...+.. ..
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 231 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRAD----TF 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHH----HH
Confidence 666666777788888888899999999999999999999999998433 33334444 444443333221 11
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHhCCC---cChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 000904 533 KAYNTFLFWSSPVLVSTATFGACYFLNVP---LYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPE 609 (1232)
Q Consensus 533 ~~~~~~~~~~~p~~v~~~tf~~~~~~~~~---Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e 609 (1232)
......+ ..++..+.++.+++.++. .+.+.+.........+..|+..+...+..+.+++++++||.+++..|+
T Consensus 232 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~ 307 (547)
T PRK10522 232 HLSAVNW----SNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPY 307 (547)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1111111 111111222322222211 122222222222233668999999999999999999999999986543
Q ss_pred CCcchhcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 610 LQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.++.. ...+. . ..+.|+++|++|+|++ ++++|+|+||+|++||+++|+|++|||||||+++|+|+++|.+|++.
T Consensus 308 ~~~~~-~~~~~-~-~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~ 381 (547)
T PRK10522 308 KAEFP-RPQAF-P-DWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (547)
T ss_pred ccccc-ccccc-C-cCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 22111 11111 1 1246999999999974 24799999999999999999999999999999999999999999884
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=318.37 Aligned_cols=221 Identities=21% Similarity=0.218 Sum_probs=159.0
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc---cCCccEEEECCeeCCCC--Ch--
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV---EPAGGKILVDGIDISKL--GL-- 1056 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~---ep~~G~I~IDG~dI~~i--~l-- 1056 (1232)
..|+++|++++|+. ..+|+|+||+|++||++|||||||||||||+++|.|.. .|.+|+|.+.++++..- ..
T Consensus 176 ~~I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 176 KDIHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eeEEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 35999999999963 35999999999999999999999999999999999864 57899998655443211 11
Q ss_pred ----------HhhhccEEEEccCCCCCcccHHhccC-CCC-CCCH----HHHHHHHHHcCCcH------HHHhh--ccCC
Q 000904 1057 ----------HDLRSRFGIIPQDPTLFNGTVRYNLD-PLS-QHTD----QEIWEVLAKCHLGE------AVREK--ENGL 1112 (1232)
Q Consensus 1057 ----------~~LR~~i~iVpQdP~LF~gTIr~NLd-p~~-~~sd----~eI~~aL~~~~L~~------~i~~~--p~gL 1112 (1232)
..++..+++++|+|.+...+...|.. |.. ..++ +++.+++++.++.+ .+... .-|+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 12355688999998654334433321 111 0111 22333333333211 01100 0122
Q ss_pred cc-cccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeE
Q 000904 1113 DS-LVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMV 1190 (1232)
Q Consensus 1113 dt-~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrV 1190 (1232)
+. .......+||||||||++|||||+++|++|||||||++||..+...+.+.|++. ++|||+||||++.+.. ||+|
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i 411 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDI 411 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEE
Confidence 21 112234589999999999999999999999999999999999999999999874 7899999999999988 9999
Q ss_pred EEEeCCEEEEe-cChhHHH
Q 000904 1191 LAISDGKLAEY-DEPMKLM 1208 (1232)
Q Consensus 1191 lVL~~G~vvE~-g~p~~Ll 1208 (1232)
++|++|++..+ |++++..
T Consensus 412 ~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 412 LHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred EEEECCEEEEeCCCHHHHH
Confidence 99999999754 5555443
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-30 Score=260.74 Aligned_cols=136 Identities=45% Similarity=0.703 Sum_probs=125.4
Q ss_pred ceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCccc-HHhcc
Q 000904 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGT-VRYNL 1081 (1232)
Q Consensus 1003 L~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gT-Ir~NL 1081 (1232)
|+|+|++|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++++||++.+|.+. +++|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998774 9999
Q ss_pred CCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCC
Q 000904 1082 DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATA 1151 (1232)
Q Consensus 1082 dp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs 1151 (1232)
..+++++++++.+++.+ ..+..++.+...||+|||||++||||++++|++||||||||
T Consensus 80 -----~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 45678999999988765 35566677778999999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-30 Score=340.50 Aligned_cols=199 Identities=22% Similarity=0.292 Sum_probs=163.4
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC---ccEEEECCeeCCCCChHhhhccEEEEccCCCCCc-c
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA---GGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFN-G 1075 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~-g 1075 (1232)
..+|+|+|++|++||.++|+||||||||||+++|.|+++|+ +|+|.+||.++.+.. .|+.++||+|++.++. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 35899999999999999999999999999999999999998 999999999987653 2778999999988775 5
Q ss_pred cHHhccCCCC-------------CCCH----------HHH------------------HHHHHHcCCcHHHHhhccCCcc
Q 000904 1076 TVRYNLDPLS-------------QHTD----------QEI------------------WEVLAKCHLGEAVREKENGLDS 1114 (1232)
Q Consensus 1076 TIr~NLdp~~-------------~~sd----------~eI------------------~~aL~~~~L~~~i~~~p~gLdt 1114 (1232)
||+|||+... +.+. +++ .++++..||. .-.||
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~-------~~~~t 327 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLD-------ICKDT 327 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCc-------cccCc
Confidence 9999996310 0011 111 2233333332 23466
Q ss_pred cccCC-CCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCh-hhhhh-cCe
Q 000904 1115 LVVED-GSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRI-PTVMD-CTM 1189 (1232)
Q Consensus 1115 ~v~e~-G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl-~ti~~-~Dr 1189 (1232)
.|++. ...+|||||||++|||+|+.+|++|+|||||++||+.+...+.+.|++.. .++|+|+++|++ +.+.+ +|+
T Consensus 328 ~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~ 407 (1470)
T PLN03140 328 IVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDD 407 (1470)
T ss_pred eeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhhe
Confidence 67543 46899999999999999999999999999999999999999999999863 378999999996 34544 999
Q ss_pred EEEEeCCEEEEecChhHHH
Q 000904 1190 VLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1190 VlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|++|+++.+|+++++.
T Consensus 408 vilL~~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 408 IILLSEGQIVYQGPRDHIL 426 (1470)
T ss_pred EEEeeCceEEEeCCHHHHH
Confidence 9999999999999999886
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-29 Score=263.60 Aligned_cols=187 Identities=23% Similarity=0.323 Sum_probs=152.9
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCC--cccH
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLF--NGTV 1077 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF--~gTI 1077 (1232)
..+|+||||++++||++||||+||||||||+++|.|.++|++|+|.++|. ++.+----.=| +-|-
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-------------v~~li~lg~Gf~pelTG 106 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-------------VAPLIELGAGFDPELTG 106 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-------------EehhhhcccCCCcccch
Confidence 36899999999999999999999999999999999999999999999993 33221111112 3478
Q ss_pred HhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccC
Q 000904 1078 RYNLDPLS---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEAT 1150 (1232)
Q Consensus 1078 r~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaT 1150 (1232)
|+|+-..+ ..+. +...+..+=++|.+++.. |- .+.|-|.+-||+.|-|.-.+|+|||+||..
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-Pv----------ktYSSGM~aRLaFsia~~~~pdILllDEvl 175 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-PV----------KTYSSGMYARLAFSVATHVEPDILLLDEVL 175 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-ch----------hhccHHHHHHHHHhhhhhcCCCEEEEehhh
Confidence 99985322 2233 444556666677776543 22 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1151 ASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1151 s~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|.-|+.=.+.=++.+++. .++.|+|+|||+++.|++ |||+++|++|++..+|+|++..+.
T Consensus 176 avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 999998777777777765 467999999999999998 999999999999999999999864
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-30 Score=266.52 Aligned_cols=208 Identities=23% Similarity=0.391 Sum_probs=177.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.+++++|+.+|. ...+++|+||++++||..|++|+|||||||.+++|+|+++|++|+|.++|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg--~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFG--DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccC--ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 378999999996 3569999999999999999999999999999999999999999999999998875 4577999
Q ss_pred EEccCCCCC-cccHHhccCCCC---CCCHHH----HHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLF-NGTVRYNLDPLS---QHTDQE----IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF-~gTIr~NLdp~~---~~sd~e----I~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|.|-|--|+ .-||.+.|..++ ....+| +...|++..+.+.- ...-..||-|.+|.+.+-.+
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~-----------~~kIk~LSKGnqQKIQfisa 144 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKK-----------TKKIKELSKGNQQKIQFISA 144 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccc-----------cchHHHhhhhhhHHHHHHHH
Confidence 999999988 458998886554 234444 44455555554321 12235799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
++++|+++|||||.|+||+-+-+.+.+.|.+.. .|.|||+-+||++.+.. ||+++.|++|+.|-+|+-++.-+
T Consensus 145 viHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 145 VIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred HhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 999999999999999999999999999988754 58899999999999988 99999999999999999877643
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-25 Score=280.34 Aligned_cols=372 Identities=22% Similarity=0.246 Sum_probs=272.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 308 YWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLT 387 (1232)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~ 387 (1232)
++ .+..+.++.++..++....|.++..+++.+. .+ ......+...+++..++..+......+...+++.++...+.
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-AD--LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 8888889999999999999999999998876 11 11122222223333334444444455666667788888899
Q ss_pred HHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000904 388 AAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWT-TSVQLCIALIILFHAVGL-ATIAALVVIMITVL 465 (1232)
Q Consensus 388 ~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~-~plqi~~~~~~L~~~lG~-~~l~gl~~~~~~~~ 465 (1232)
..+|+|.++++....+++.+|++++.+++|++.+...+...-..-. .++-++ +.+.+...++| .+++.+...+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~l~~~~~~~~~~~ 167 (567)
T COG1132 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLI-GSLVLLFSLSWRLALILLLILPLLAL 167 (567)
T ss_pred HHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999988888888999999999999999988766422222 233333 33333334455 44455554555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHh
Q 000904 466 CNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLF--WSS 543 (1232)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~--~~~ 543 (1232)
....+.++..+..++..+..++..+.+.|.++++++||.|+.|+...++..+.-++..+.-.+.....+....+. ...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (567)
T COG1132 168 VLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSS 247 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677667888888899999999999999999999999999998776666555444433322222222222111 111
Q ss_pred hHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCC
Q 000904 544 PVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIEN 623 (1232)
Q Consensus 544 p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~ 623 (1232)
-..+.++.++.+.+..+.++.+.+.+.+.++..+..|+..+...+..+.++.+|++|+.++++.++...+.... . ..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~-~-~~- 324 (567)
T COG1132 248 LGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP-L-KD- 324 (567)
T ss_pred HHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC-C-CC-
Confidence 12334455666666777899999999999999999999999999999999999999999999985532211111 1 11
Q ss_pred CcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 624 VNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 624 ~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
..+.|+++|++|+|++ ++++|+|+||++++||++|||||+||||||++++|+|.++|.+|.|.-
T Consensus 325 ~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 325 TIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred CCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 3456999999999975 468999999999999999999999999999999999999999999853
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=244.05 Aligned_cols=225 Identities=22% Similarity=0.363 Sum_probs=176.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECC-----eeCCCCChHh-
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG-----IDISKLGLHD- 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG-----~dI~~i~l~~- 1058 (1232)
-+++++++..|.+. .-.+||||++.|||..||||+||||||||+++|.+-+.|+.|+|.++- .|+-.++-.+
T Consensus 6 LL~V~~lsk~Yg~~--~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 6 LLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ceeehhhhhhhCCC--cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 37888999999754 368999999999999999999999999999999999999999999975 3444443222
Q ss_pred ---hhccEEEEccCCCC-C------cccHHhccCCCCC--CC--HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1059 ---LRSRFGIIPQDPTL-F------NGTVRYNLDPLSQ--HT--DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1059 ---LR~~i~iVpQdP~L-F------~gTIr~NLdp~~~--~s--d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
+|..-|+|.|+|-- . -+.|-|-+...+. |- .++..+-|+++.+. + +.+.+.+..+|
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~---------~-~RiDD~PrtFS 153 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID---------L-DRIDDLPRTFS 153 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccC---------c-ccccCcccccc
Confidence 35667999999931 0 1112222211111 11 12333445555432 1 23456678999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~ 1201 (1232)
||.+||+.|||-|..+|++++|||||-+||..-.+.+.+.+|..-. +-.+++||||+..++- +||.+||.+|+++|.
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9999999999999999999999999999999999999999887432 5689999999999876 999999999999999
Q ss_pred cChhHHHhhcCCHHHHHHHH
Q 000904 1202 DEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1202 g~p~~Ll~~~~~~f~~l~~~ 1221 (1232)
|-.+..+.++...|.+|.-.
T Consensus 234 GLTDrvLDDP~hPYTQLLVS 253 (258)
T COG4107 234 GLTDRVLDDPHHPYTQLLVS 253 (258)
T ss_pred ccccccccCCCCchHHHHHH
Confidence 99999999999889888643
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-29 Score=239.01 Aligned_cols=194 Identities=23% Similarity=0.327 Sum_probs=159.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC---ccEEEECCeeCCCCChHhhhc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA---GGKILVDGIDISKLGLHDLRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i~l~~LR~ 1061 (1232)
-+.++||+.+-+ ....|.++|++|.+||.+-+.||||||||||+.-+.|.+.+. +|++.+|++++..++-+ ++
T Consensus 2 ~l~l~nvsl~l~--g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qR 77 (213)
T COG4136 2 MLCLKNVSLRLP--GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QR 77 (213)
T ss_pred ceeeeeeeecCC--CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hh
Confidence 467889998764 345899999999999999999999999999999999999875 89999999999988765 68
Q ss_pred cEEEEccCCCCCcc-cHHhccCC------CCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1062 RFGIIPQDPTLFNG-TVRYNLDP------LSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~g-TIr~NLdp------~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
++|+.+|||.||.. +|-+||.. .++........||++.+|.++..+.| ..||||||-|++|-
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~ 146 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALL 146 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHH
Confidence 99999999999965 89999852 12334455778999998887776655 47999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecChhhhhhcCeEEEE
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAE--FADCTVITVAHRIPTVMDCTMVLAI 1193 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~~DrVlVL 1193 (1232)
|+|+..||.|+||||.|.||.+-.....+..-.+ ..+--+|.||||.+-+..-.||+.|
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999988776666554332 2477899999999877643354443
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-28 Score=256.90 Aligned_cols=203 Identities=25% Similarity=0.332 Sum_probs=152.0
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEc-cCCCCC-cccH
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIP-QDPTLF-NGTV 1077 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVp-QdP~LF-~gTI 1077 (1232)
-++.+||||+|++|+++|.+|+|||||||++|+|.|++.|++|+|.++|.+--+-....+ +++++|+ |--++- .-.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~-~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYL-RSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHH-HHHHHHhhhhheeeeechh
Confidence 358999999999999999999999999999999999999999999999976544222223 3454443 322221 1111
Q ss_pred HhccCC---CCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCC
Q 000904 1078 RYNLDP---LSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154 (1232)
Q Consensus 1078 r~NLdp---~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD 1154 (1232)
.+.+.. .-+..|++-.+-++ .+++- -+++..+...-..||-|||.|.-||-|||++|+||+|||||=+||
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~-----~l~ei--Ldl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLD 188 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLD-----FLTEI--LDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD 188 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHH-----HHHHH--hcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcc
Confidence 111100 00223333333221 11111 144444555567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--cCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1155 NATDMILQKTIRAE--FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1155 ~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
..+...|.+.|++. ..++||+..||+++-|.. ||||+.|++|+++..|+-.+|.++
T Consensus 189 V~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 189 VNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred hhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 99999999999874 358999999999999987 999999999999999999988764
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-28 Score=264.32 Aligned_cols=188 Identities=21% Similarity=0.230 Sum_probs=128.6
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHH-HHHhccccCCccEEEEC-C------eeCCCC---ChHhhh-ccEEEEc
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLI-GALFRLVEPAGGKILVD-G------IDISKL---GLHDLR-SRFGIIP 1067 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl-~~L~rl~ep~~G~I~ID-G------~dI~~i---~l~~LR-~~i~iVp 1067 (1232)
..+|+|+||+|++||.+||+|+||||||||+ ..+. .+|++.+. + .++..+ ...+++ ...++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 4699999999999999999999999999996 3332 13443221 0 111111 111122 1344555
Q ss_pred cCCCCC-c--ccH---HhccCCC----CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1068 QDPTLF-N--GTV---RYNLDPL----SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1068 QdP~LF-~--gTI---r~NLdp~----~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
|++... + .++ .+..+.+ .....++..+.|+++++.+. .....+.+||||||||++|||||
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~laral 152 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYL----------TLSRSAPTLSGGEAQRIRLATQI 152 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcc----------cccCccCcCCHHHHHHHHHHHHH
Confidence 655321 1 121 1111111 11112223455666555331 13345678999999999999999
Q ss_pred ccCC--CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCeEEEE------eCCEEEEec
Q 000904 1138 LRRS--RILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMDCTMVLAI------SDGKLAEYD 1202 (1232)
Q Consensus 1138 L~~~--kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL------~~G~vvE~g 1202 (1232)
+++| ++|||||||++||..+...+.+.|++.. .+.|+|+|||+++.+..||+|++| ++|+|+|+|
T Consensus 153 ~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 153 GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 9998 5999999999999999999999998743 478999999999998889999999 999999986
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=279.87 Aligned_cols=371 Identities=14% Similarity=0.104 Sum_probs=261.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 311 DIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAG--FKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTA 388 (1232)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~ 388 (1232)
.+++..++.++.+.+....|++.+.+++.+.+++. +......+++.+++..++.++ ..|...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~----~~~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSA----IKYLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 56677888889999999999999999998764331 111112222333333333333 344466667777777777
Q ss_pred HHHHHHhcCch----hhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000904 389 AIYKKQLRLSN----AARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGL-ATIAALVVIMI 462 (1232)
Q Consensus 389 ~iy~K~L~ls~----~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~~~~~ 462 (1232)
.++++.+.-.. ...++ .+|++.+.+++|++.+.+... .+..+...++.++.+++.++..++| .+++.++.+++
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 77777665321 11122 479999999999999988654 5566667778888888888887888 55566667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000904 463 TVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWS 542 (1232)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~ 542 (1232)
.+.+...+.+.+.+..++..+..++-....+|.++|+++||+|+-|+.+.++..+.=++-.+..++.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 77888888999999999999999999999999999999999999999888887765555555555555444443333222
Q ss_pred hh----HHHHHHHHHHHHHh--C---CCcChhhHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 000904 543 SP----VLVSTATFGACYFL--N---VPLYASNVFTF----VATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPE 609 (1232)
Q Consensus 543 ~p----~~v~~~tf~~~~~~--~---~~Lt~~~vFt~----lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e 609 (1232)
.. ..+..+..+..++. | +.+|.+..... ..++..+..|+..+...+..+.+++++.+||.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22222222332332 1 56887765442 234566788999999999999999999999999996422
Q ss_pred -CCcc-----hhcc-------------c---CCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEecccc
Q 000904 610 -LQSM-----NIRQ-------------K---GNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGS 667 (1232)
Q Consensus 610 -~~~~-----~~~~-------------~---~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GS 667 (1232)
.+.. .... . .......+.|+++|++|+|++ ++++|+|+||+|++||.++|+|||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCC
Confidence 1100 0000 0 000002356999999999963 24799999999999999999999999
Q ss_pred chHHHHHHHHhcCCCcccccc
Q 000904 668 GKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 668 GKSTLL~~ilGe~~~~~G~v~ 688 (1232)
|||||+++|.|++|+.+|.+.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~ 510 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLT 510 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEe
Confidence 999999999999999999874
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=292.41 Aligned_cols=215 Identities=27% Similarity=0.381 Sum_probs=180.4
Q ss_pred eEEEEeeEeEecCC---CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC---CccEEEECCeeCCCCChHh
Q 000904 985 KVDICDLQIRYRPD---SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP---AGGKILVDGIDISKLGLHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~---~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep---~~G~I~IDG~dI~~i~l~~ 1058 (1232)
.+.++|+++.-+.. .+.+|||||.+++|||..||.|++|||||||+++|.|..+. .+|+|++||+ ..+.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~~ 101 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSRS 101 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchhh
Confidence 58899998887543 46799999999999999999999999999999999999985 6899999994 445678
Q ss_pred hhccEEEEccCCCCCc-ccHHhccCCC------CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccC-CCCCCChh
Q 000904 1059 LRSRFGIIPQDPTLFN-GTVRYNLDPL------SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVE-DGSNWSMG 1126 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~-gTIr~NLdp~------~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e-~G~nLSgG 1126 (1232)
.|+..|||+||-.++. -||||+|... ++. -++.+.+.++..+|.+. =|+.+|. +...+|||
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~-------~~t~ig~~~~rgiSGG 174 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC-------ADTLIGNPGIRGLSGG 174 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhh-------ccceecCCCCCccccc
Confidence 8999999999999885 4999998421 112 24557778888777633 2444542 33679999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh-h-hhcCeEEEEeCCEEEEecC
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPT-V-MDCTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~t-i-~~~DrVlVL~~G~vvE~g~ 1203 (1232)
||+|+++|.-|+.+|.||+||||||+||..+...+.++|++.. +|+|||+.=|.++. + .-.|++++|.+|+++-.|+
T Consensus 175 ErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~ 254 (613)
T KOG0061|consen 175 ERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGS 254 (613)
T ss_pred hhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecC
Confidence 9999999999999999999999999999999999999999854 48999999999864 3 3489999999999999999
Q ss_pred hhHHHh
Q 000904 1204 PMKLMK 1209 (1232)
Q Consensus 1204 p~~Ll~ 1209 (1232)
|+++.+
T Consensus 255 ~~~~~~ 260 (613)
T KOG0061|consen 255 PRELLE 260 (613)
T ss_pred HHHHHH
Confidence 998853
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-23 Score=247.28 Aligned_cols=367 Identities=19% Similarity=0.198 Sum_probs=269.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 314 MSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKK 393 (1232)
Q Consensus 314 ~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~iy~K 393 (1232)
+.+++.++..++...+-.++-..++-+-..+. ...-+.++++++++.++.+++.-.-....++.+.++|..+-..+++|
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777888777766655533322 22334456666667777777666666778899999999999999999
Q ss_pred HhcCchhhhccCChhhHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 394 QLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP----FWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAP 469 (1232)
Q Consensus 394 ~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~----~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~~~~~~~~~ 469 (1232)
..++.....+..++|++++++..-++.+..+. ..+...-..|+-+.++++...+.-|.-.++.+..+++.| ..
T Consensus 83 l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfM---il 159 (559)
T COG4988 83 LAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFM---IL 159 (559)
T ss_pred HHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HH
Confidence 99999777777889999999999998886643 333334456777777777776665555555555544444 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 000904 470 LAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAI----EILRNVEYKWLSAVQLRKAYNTFLFWSSPV 545 (1232)
Q Consensus 470 ~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i----~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~ 545 (1232)
+++..++..++.++....=-..-=+-|+|+-++|.|+-.+...++| ++.|+.-++.||-.....++.-++...+-.
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777666677778899999999999877655554 568999999998777766666666554433
Q ss_pred HHHHHHHHHHHHhC-CCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCC
Q 000904 546 LVSTATFGACYFLN-VPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENV 624 (1232)
Q Consensus 546 ~v~~~tf~~~~~~~-~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~ 624 (1232)
++ .+.++ .-+++ +++|-...|.++-+--=.-.|++.+-...-.-.++..+.+.+..|++.|+...............
T Consensus 240 lv-Av~~g-~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~ 317 (559)
T COG4988 240 LV-AVYIG-FRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEP 317 (559)
T ss_pred HH-HHHHH-HHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCC
Confidence 33 23333 34455 58888888888755444556999999999999999999999999999887654432211111112
Q ss_pred cceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 625 NHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 625 ~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
+..++.+|++|.|+++ +++++|+||++++|++++|||+||||||||+++|+|+.+|++|++.
T Consensus 318 ~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~ 379 (559)
T COG4988 318 PIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIR 379 (559)
T ss_pred CceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEE
Confidence 3345566999999854 3899999999999999999999999999999999999999999984
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=256.06 Aligned_cols=163 Identities=20% Similarity=0.248 Sum_probs=133.8
Q ss_pred eeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCc---------cEEEECCeeCCCCChHhhhccEEEEccCCCCCc
Q 000904 1004 KGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG---------GKILVDGIDISKLGLHDLRSRFGIIPQDPTLFN 1074 (1232)
Q Consensus 1004 ~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~---------G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~ 1074 (1232)
+++++++++| .++|+||||||||||+++|.++..|.. |++.++|.++.. ...+.+++++||+|..+-
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCce
Confidence 5689999999 999999999999999999999987653 468888887754 234688999999998761
Q ss_pred ccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc----cCCCEEEEeccC
Q 000904 1075 GTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL----RRSRILVLDEAT 1150 (1232)
Q Consensus 1075 gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL----~~~kILILDEaT 1150 (1232)
+...++++.++++.. + ..+ .....||+|||||++|||+++ ++|++++|||||
T Consensus 90 ----------~~~~~~~~~~~l~~~---~-------~~~----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 90 ----------SIISQGDVSEIIEAP---G-------KKV----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred ----------eEEehhhHHHHHhCC---C-------ccc----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 111245677777761 1 112 234579999999999999986 577999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEe
Q 000904 1151 ASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAIS 1194 (1232)
Q Consensus 1151 s~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~ 1194 (1232)
++||+++...+.+.|++..++.|||+|||+++.+..||+++.+.
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 146 AALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred ccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEE
Confidence 99999999999999998766899999999999988899999885
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-26 Score=251.52 Aligned_cols=193 Identities=23% Similarity=0.291 Sum_probs=150.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.+-+.||+|.|+. ..+.+++++|-|.--.+|+||||||.|||||+++|.|-++|+.|+..-+. |-+||
T Consensus 586 vLGlH~VtFgy~g-qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPG-QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRIG 653 (807)
T ss_pred eeecccccccCCC-CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeeee
Confidence 3668899999964 45789999999999999999999999999999999999999999876443 56899
Q ss_pred EEccCCC--C-CcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1065 IIPQDPT--L-FNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1065 iVpQdP~--L-F~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
...|... | -+.|--+-|.-.-...-++.+.+|...||....... .-..||||||-|+++|-.-++.|
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTi----------kikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTI----------KIKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceE----------eeeecCCcchHHHHHHHHhcCCC
Confidence 9999762 1 122433322211122346778888888775432211 12369999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcC-eEEEEeCCEEEEe
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCT-MVLAISDGKLAEY 1201 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~D-rVlVL~~G~vvE~ 1201 (1232)
+||||||||++||.++...+-++|++ .+..||+|+||-..|...| ..+|+++-.|-|.
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIne--y~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINE--YNGGVIMVSHDERLIVETDCNLWVVENQGIDEI 782 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHh--ccCcEEEEecccceeeecCceEEEEccCChhhc
Confidence 99999999999999999999999986 3557999999999998755 4666666555443
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=234.94 Aligned_cols=186 Identities=23% Similarity=0.335 Sum_probs=155.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++.+|++..- +...++.++||++.+||.+-|+||||||||||+++|.|+.+|++|+|.++|.+|.... +..++.+.|
T Consensus 3 L~a~~L~~~R--~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCER--GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLY 79 (209)
T ss_pred chhhhhhhcc--CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHH
Confidence 3455666543 3457899999999999999999999999999999999999999999999999887754 334677788
Q ss_pred EccCCCCC-cccHHhccCCCC----CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccC
Q 000904 1066 IPQDPTLF-NGTVRYNLDPLS----QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRR 1140 (1232)
Q Consensus 1066 VpQdP~LF-~gTIr~NLdp~~----~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~ 1140 (1232)
+--.|-+= +-|+.|||..+. ..+++.+|+||+.++|.++. ++|- .+||.|||+|++|||-.+.+
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~-dlp~----------~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLE-DLPV----------GQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccc-ccch----------hhcchhHHHHHHHHHHHcCC
Confidence 88777654 559999997543 35678999999999997643 2333 37999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh
Q 000904 1141 SRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1141 ~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~ 1185 (1232)
+++-||||||+++|.+.++.+...+.+.. +|..||..||..--+.
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 99999999999999999999999988754 4788999999876553
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=255.59 Aligned_cols=194 Identities=20% Similarity=0.287 Sum_probs=137.7
Q ss_pred ccceeeeEEEeCCcEEEEECCCCCChHHHHHHHh-----cc-c----cCCccE-----------EEECCeeCCCCChH--
Q 000904 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALF-----RL-V----EPAGGK-----------ILVDGIDISKLGLH-- 1057 (1232)
Q Consensus 1001 ~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~-----rl-~----ep~~G~-----------I~IDG~dI~~i~l~-- 1057 (1232)
..|||||++|+.|+.++|+|.||||||||++-++ +. . .|..++ |.+|..+|..-+..
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3699999999999999999999999999998552 21 1 133332 45555544332211
Q ss_pred --------hhhc----------------cEEEEccCCC-CCcccHHhccCCCCCC-CHHHHHHHHHHcCCcHHHHhhccC
Q 000904 1058 --------DLRS----------------RFGIIPQDPT-LFNGTVRYNLDPLSQH-TDQEIWEVLAKCHLGEAVREKENG 1111 (1232)
Q Consensus 1058 --------~LR~----------------~i~iVpQdP~-LF~gTIr~NLdp~~~~-sd~eI~~aL~~~~L~~~i~~~p~g 1111 (1232)
++|+ .+.|..++.. ..+-|+.+|++.+... ..++..++|++++|...
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l------- 161 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYI------- 161 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchh-------
Confidence 1111 1223333332 2233555555443321 22344455555554331
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHccC---CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhc
Q 000904 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRR---SRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMDC 1187 (1232)
Q Consensus 1112 Ldt~v~e~G~nLSgGQRQrl~LARALL~~---~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~ 1187 (1232)
..+....+||||||||++|||+|+++ |++++|||||++||+.+.+.+.+.|++.. .+.|+|+|+|+++.+..|
T Consensus 162 ---~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 162 ---KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred ---hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 23455678999999999999999996 79999999999999999999999998754 478999999999999999
Q ss_pred CeEEEE------eCCEEEEecCh
Q 000904 1188 TMVLAI------SDGKLAEYDEP 1204 (1232)
Q Consensus 1188 DrVlVL------~~G~vvE~g~p 1204 (1232)
|+|++| ++|+|++.|+|
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999986
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-27 Score=230.22 Aligned_cols=199 Identities=22% Similarity=0.327 Sum_probs=153.8
Q ss_pred EEEEeeEeEecC----C-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECC----eeCCCCCh
Q 000904 986 VDICDLQIRYRP----D-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG----IDISKLGL 1056 (1232)
Q Consensus 986 I~~~nvs~~Y~~----~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG----~dI~~i~l 1056 (1232)
+.++|++.+|.- + .-||++|+||++++||++.+=|+||||||||+++|.+-|.|++|+|.+.. +|+.....
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 667788777631 1 13699999999999999999999999999999999999999999999953 45555554
Q ss_pred Hh----hhccEEEEccCCCCCc-c-c---HHhccCCCCC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1057 HD----LRSRFGIIPQDPTLFN-G-T---VRYNLDPLSQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1057 ~~----LR~~i~iVpQdP~LF~-g-T---Ir~NLdp~~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
++ .|+-||||+|---... - + +.+-+--.+- .-.+...+.|.+.++.+...+++. ..+|
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaP----------aTFS 154 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAP----------ATFS 154 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCC----------cccC
Confidence 43 3677999999431110 0 0 1111100111 123445677888888888877764 5899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAIS 1194 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~ 1194 (1232)
|||+||+.|||.++-+-+||+|||||++||..+.+.+.+.|++.. +|+.+|=|=||-+.=.. |||++-|.
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 999999999999999999999999999999999999999999854 58899999999776555 89998775
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-24 Score=240.20 Aligned_cols=193 Identities=22% Similarity=0.326 Sum_probs=162.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|.++|+-+-- |+...+...+||+|++|-.+-|.||||||||+|.+.|.|+.+...|...+-- +.+|-
T Consensus 481 gI~lenIpvIt-P~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mF 548 (728)
T KOG0064|consen 481 GIILENIPVIT-PAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIF 548 (728)
T ss_pred ceEEecCceec-cCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceE
Confidence 38888887654 4556688999999999999999999999999999999999999888776642 45799
Q ss_pred EEccCCCCCcccHHhccC-CC-------CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFNGTVRYNLD-PL-------SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~gTIr~NLd-p~-------~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
||||.|.+=-||+||.+- |- ..++|+|+...|+.++|+. +.+...|+|....- -+-||||||||+++||.
T Consensus 549 YIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~-i~qr~~g~da~~dW-kd~LsgGekQR~~mARm 626 (728)
T KOG0064|consen 549 YIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEH-ILQREGGWDAVRDW-KDVLSGGEKQRMGMARM 626 (728)
T ss_pred eccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHH-HHHhccChhhhccH-HhhccchHHHHHHHHHH
Confidence 999999998999998873 32 2478999999999999974 45556788776533 35799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEE
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAI 1193 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL 1193 (1232)
+.++|+--+|||+||++-.+-|..|.++.++ .|-+.|.|+||++...--...+-.
T Consensus 627 ~yHrPkyalLDEcTsAvsidvE~~i~~~ak~--~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 627 FYHRPKYALLDECTSAVSIDVEGKIFQAAKD--AGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred HhcCcchhhhhhhhcccccchHHHHHHHHHh--cCceEEEeecCccHHHHHHHHHhc
Confidence 9999999999999999999999999999886 588999999999877654444443
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-22 Score=228.45 Aligned_cols=384 Identities=17% Similarity=0.192 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 300 VLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAG-FKYEGYVLAITLFVAKILESLSQRQWYFRSRLI 378 (1232)
Q Consensus 300 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~-~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1232)
+.+..++ .|+.+++++++.++..++...--.+=+.+|.-..-... ....-|+-+++.=...+..+....-=...+...
T Consensus 7 ~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~A 85 (573)
T COG4987 7 YLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDA 85 (573)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3444444 67777777777666555544333344455533211110 001111122222222333333222222334445
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 000904 379 GLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIIL--FHAVGLATIAA 456 (1232)
Q Consensus 379 ~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L--~~~lG~~~l~g 456 (1232)
..|+=+.+--.+|+|....+..-.....+|++.|.+..|++.+++...-.-.-|..-+-++++..+. +..++.+.+.+
T Consensus 86 tfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~ 165 (573)
T COG4987 86 TFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLG 165 (573)
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6677788888899999999988777788999999999999999998766655554444333333332 44444566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 457 LVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1232)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~ 536 (1232)
+...++++.+-....+.-++..++..+.+..=-.-..+.+.|+.-.+++|-++.|.+.+++.-+.=.+.-+|..-.....
T Consensus 166 ~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~ 245 (573)
T COG4987 166 LILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLS 245 (573)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555666666666655555555567788999999999999999999876653332222222333332232
Q ss_pred HHHHhHhh-HHHH--HHHHHHHHHhCCCcC-hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Q 000904 537 TFLFWSSP-VLVS--TATFGACYFLNVPLY-ASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQS 612 (1232)
Q Consensus 537 ~~~~~~~p-~~v~--~~tf~~~~~~~~~Lt-~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~ 612 (1232)
.++..... .++. .++++.-.-.| .++ +.-+...++.|..+-.-.-..|.+...+-|+..|.+|+.+.++.++-..
T Consensus 246 ~a~~~l~~g~~v~~~l~w~a~~~~~G-~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~ 324 (573)
T COG4987 246 DAILLLIAGLLVIGLLLWMAAQVGAG-ALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVT 324 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCC-CcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccC
Confidence 22222211 1121 22222212223 333 2222222222333322112234677888899999999999998754333
Q ss_pred chhcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 613 MNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 613 ~~~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
...+..+. .+..++++|++|+|+.+ +.++|+|+||++++||+|||+|++||||||+++.|.|-++|.+|++.-
T Consensus 325 ~~~~~~~~---~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~ 397 (573)
T COG4987 325 FPDEQTAT---TGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITL 397 (573)
T ss_pred CCccccCC---ccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeE
Confidence 22111221 22389999999999865 458999999999999999999999999999999999999999999853
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=243.84 Aligned_cols=175 Identities=27% Similarity=0.359 Sum_probs=131.6
Q ss_pred EEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCC-CCcccHHhccCCCC--
Q 000904 1009 TFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPT-LFNGTVRYNLDPLS-- 1085 (1232)
Q Consensus 1009 ~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~-LF~gTIr~NLdp~~-- 1085 (1232)
+|..||.+|++||||-||||++++|+|.++|++|. ..| -+++|=||--. -|+|||++-+.-..
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 45678999999999999999999999999999998 222 27899999542 48999986552110
Q ss_pred CCCHHHHH-HHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHH
Q 000904 1086 QHTDQEIW-EVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKT 1164 (1232)
Q Consensus 1086 ~~sd~eI~-~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~ 1164 (1232)
.+.+.-.+ +.. .|..|+..+...-.+|||||.||++||-||.|++++.+||||+|.||.+..-.+-++
T Consensus 429 ~~~~s~~~~ei~-----------~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 429 AFGSSYFKTEIV-----------KPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred hcccchhHHhhc-----------CccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH
Confidence 01111111 112 244455555555568999999999999999999999999999999999999888899
Q ss_pred HHHh--cCCcEEEEEecChhhhhh-cCeEEEEeC--CEEEEecChhHHH
Q 000904 1165 IRAE--FADCTVITVAHRIPTVMD-CTMVLAISD--GKLAEYDEPMKLM 1208 (1232)
Q Consensus 1165 L~~~--~~~~TVI~IAHrl~ti~~-~DrVlVL~~--G~vvE~g~p~~Ll 1208 (1232)
||+. ..++|.++|-||+-.+.- +||++|.+. |+=-....|..+.
T Consensus 498 IRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr 546 (591)
T COG1245 498 IRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMR 546 (591)
T ss_pred HHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHH
Confidence 8873 357899999999988766 899999963 3333334566553
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-25 Score=247.06 Aligned_cols=192 Identities=19% Similarity=0.262 Sum_probs=137.8
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHh----------------ccccCCcc------
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALF----------------RLVEPAGG------ 1042 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~----------------rl~ep~~G------ 1042 (1232)
.|+++|.. +|. ...++++++ |+.++|+||||||||||+++|. +++.+.+|
T Consensus 3 ~i~~~nfk-sy~--~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 3 QVIIQGFK-SYK--DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEEeCcc-Ccc--cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 36666642 354 234777776 8899999999999999999998 34444455
Q ss_pred --EEEECCeeCCC-C--ChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHH--hhcc-----
Q 000904 1043 --KILVDGIDISK-L--GLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVR--EKEN----- 1110 (1232)
Q Consensus 1043 --~I~IDG~dI~~-i--~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~--~~p~----- 1110 (1232)
+|.+++.|-.. + ....++++++++||++.++. ...+.+|++.+++.+++.+... ..+.
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~----------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~ 144 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK----------KNVTKNDVMNLLESAGFSRSNPYYIVPQGKINS 144 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC----------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH
Confidence 55555422110 0 11234556677766665432 1246788999999988754210 0111
Q ss_pred --CCcccccCCCCCCChhHHHHHHHHHHHc----cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhh
Q 000904 1111 --GLDSLVVEDGSNWSMGQRQLFCLGRALL----RRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTV 1184 (1232)
Q Consensus 1111 --gLdt~v~e~G~nLSgGQRQrl~LARALL----~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti 1184 (1232)
+++....+.+.+||||||||++||||++ ++|++++|||||++||+.+.+.+.+.|++..++.|+|+++|+.+..
T Consensus 145 l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~ 224 (243)
T cd03272 145 LTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELL 224 (243)
T ss_pred hhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 2222345677899999999999999996 4689999999999999999999999999876688999999998877
Q ss_pred hhcCeEEEEe
Q 000904 1185 MDCTMVLAIS 1194 (1232)
Q Consensus 1185 ~~~DrVlVL~ 1194 (1232)
.-||++++|+
T Consensus 225 ~~~d~i~~l~ 234 (243)
T cd03272 225 EVADKFYGVK 234 (243)
T ss_pred hhCCEEEEEE
Confidence 7799999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-25 Score=243.69 Aligned_cols=191 Identities=17% Similarity=0.071 Sum_probs=140.8
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEe-CCcEEEEECCCCCChHHHHHHHhc-cccCCccEEEECCeeCCCCChHhhhcc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFE-GGHKIGIVGRTGSGKTTLIGALFR-LVEPAGGKILVDGIDISKLGLHDLRSR 1062 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~-~GekvgIVGrtGSGKSTLl~~L~r-l~ep~~G~I~IDG~dI~~i~l~~LR~~ 1062 (1232)
.|+++|+. +|... ++++|+.. +|+.++|+|+||||||||+++|.+ ++.+..+....+ .+...+.....+..
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEE
Confidence 58899988 77533 56666544 589999999999999999999994 666665655543 22334444566778
Q ss_pred EEEEccCCCCCcccHHhccCCCCCCCHHHHHHH--HHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc-
Q 000904 1063 FGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEV--LAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR- 1139 (1232)
Q Consensus 1063 i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~a--L~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~- 1139 (1232)
+++++|++... ..+.... ..+.++..+. ++.. +++..+...+.+||+|||||++||||++.
T Consensus 78 v~~~f~~~~~~----~~~~r~~-gl~~~~~~~~~~l~~g-----------~l~~~l~~~~~~lS~G~~~r~~la~al~~~ 141 (213)
T cd03279 78 VSFTFQLGGKK----YRVERSR-GLDYDQFTRIVLLPQG-----------EFDRFLARPVSTLSGGETFLASLSLALALS 141 (213)
T ss_pred EEEEEEECCeE----EEEEEec-CCCHHHHHHhhhhhhc-----------chHHHhcCCccccCHHHHHHHHHHHHHHhH
Confidence 99999998322 1222212 2333333332 1222 24444556677899999999999999975
Q ss_pred ---------CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhh-cCeEEEEeCCEE
Q 000904 1140 ---------RSRILVLDEATASIDNATDMILQKTIRAEFA-DCTVITVAHRIPTVMD-CTMVLAISDGKL 1198 (1232)
Q Consensus 1140 ---------~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~-~~TVI~IAHrl~ti~~-~DrVlVL~~G~v 1198 (1232)
+|++++|||||+++|+.+.+.+.+.|++..+ +.|+|+|||+++.+.. +|+++++++|.+
T Consensus 142 p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 142 EVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 5689999999999999999999999987644 7899999999998877 799999999854
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-24 Score=268.53 Aligned_cols=199 Identities=26% Similarity=0.329 Sum_probs=165.0
Q ss_pred CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc--CCccEEEECCeeCCCCChHhhhccEEEEccCCC-CCc
Q 000904 998 DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE--PAGGKILVDGIDISKLGLHDLRSRFGIIPQDPT-LFN 1074 (1232)
Q Consensus 998 ~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e--p~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~-LF~ 1074 (1232)
+....|+||+=-++||.-.|++|.||||||||++.|.|-.. ..+|.|+|||.+..+ +..++++|||.|++. +=+
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 44578999999999999999999999999999999998764 247999999988765 678899999999885 556
Q ss_pred ccHHhccCC------CCCCCHHH----HHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC-CE
Q 000904 1075 GTVRYNLDP------LSQHTDQE----IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS-RI 1143 (1232)
Q Consensus 1075 gTIr~NLdp------~~~~sd~e----I~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~-kI 1143 (1232)
-||||-|.. -.+.+++| +.++.+..+|++.- |..||.-|..||+.||.|+.||=-|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 699998842 12233333 56667666665543 45678888999999999999999999999 89
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhh--hhcCeEEEEe-CCEEEEecChhH
Q 000904 1144 LVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTV--MDCTMVLAIS-DGKLAEYDEPMK 1206 (1232)
Q Consensus 1144 LILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti--~~~DrVlVL~-~G~vvE~g~p~~ 1206 (1232)
|.|||||||||+++...|.+++|+.. .|+||++-=|.++.. ...|+++.|+ .|+.+-+|++.+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999853 589999999998643 4589999996 578999888644
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-21 Score=225.78 Aligned_cols=358 Identities=17% Similarity=0.170 Sum_probs=258.7
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 000904 323 VLTLSAGPLLLNAFILVTEGKAGFK---YEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSN 399 (1232)
Q Consensus 323 ~~~~~~~P~ll~~~i~~~~~~~~~~---~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~iy~K~L~ls~ 399 (1232)
-.+....|++++..++-++.-+... ......+.+++++.+..+++.---.+....+..++=.....-+|+..+.++-
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4556677999999999886322211 1233445555556666655555555555666666666777788888888888
Q ss_pred hhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 400 AARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLAT-IAALVVIMITVLCNAPLAKLQHKF 477 (1232)
Q Consensus 400 ~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~-l~gl~~~~~~~~~~~~~~~~~~~~ 477 (1232)
....+.++|++.+.|..-...|.++.. .+..+.-..+++.+....+|+..|++. +..+..+.....+...++++-.++
T Consensus 123 ~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~f 202 (591)
T KOG0057|consen 123 SFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 (591)
T ss_pred HhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHH
Confidence 777777899999999988888888654 334445566788888889999999844 444555555566777788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 000904 478 QTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEI-LRNVEYKWLSAVQLRKAYNTFLFWSSPVLVSTATFGACY 556 (1232)
Q Consensus 478 ~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~-~R~~E~~~l~k~~~~~~~~~~~~~~~p~~v~~~tf~~~~ 556 (1232)
+++.+++.|+..+.+-+.|.|-.+||.|+=|+...+++.+ +++.|-..++-.+.+ ++..+.-- -.+....++..++
T Consensus 203 R~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl-~~lnfgQ~--~iFsv~~~~im~l 279 (591)
T KOG0057|consen 203 RKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSL-AFLNFGQK--AIFSVALTFIMVL 279 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHH-HHHHHHHH--HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999765 455554444333322 22222211 1122222333332
Q ss_pred ----HhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCCcceEEEEe
Q 000904 557 ----FLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKS 632 (1232)
Q Consensus 557 ----~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~I~i~~ 632 (1232)
...+.+|.+..--..+++..|+.|+..+.....-+.|+..=..-.....+.++-.... ..|... .++.|+++|
T Consensus 280 ~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i~~-~~~~I~F~d 356 (591)
T KOG0057|consen 280 GSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPIEL-FGGSIEFDD 356 (591)
T ss_pred HhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCccc-CCCcEEEEe
Confidence 3456899999999999999999999999998888888877666554444332211110 011111 445799999
Q ss_pred eEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 633 ASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 633 ~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
++|+|++ ++++|+++||+|++||+|||||+|||||||++++|++..+ .+|+|.-
T Consensus 357 V~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~I 410 (591)
T KOG0057|consen 357 VHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILI 410 (591)
T ss_pred eEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEE
Confidence 9999974 4579999999999999999999999999999999999999 8999843
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-23 Score=229.67 Aligned_cols=362 Identities=16% Similarity=0.252 Sum_probs=232.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcch-HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 316 GFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYE-GYVLAITLFVA------KILESLSQRQWYFRSRLIGLKVRSLLTA 388 (1232)
Q Consensus 316 ~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~-g~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~R~~l~~ 388 (1232)
.++.++.-++...-|.+.+.+++-+..+..+.+. -+.++...|+- .++..+-..-|.-..+-...++-..+..
T Consensus 221 l~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfr 300 (790)
T KOG0056|consen 221 LFLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFR 300 (790)
T ss_pred HHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHH
Confidence 3444455556666788888888887755444332 22222222221 1222221111211122223344444555
Q ss_pred HHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000904 389 AIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWF-HQIWTTSVQLCIALIILFHAVG-LATIAALVVIMITVLC 466 (1232)
Q Consensus 389 ~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~-~~~w~~plqi~~~~~~L~~~lG-~~~l~gl~~~~~~~~~ 466 (1232)
-+.+-++++.-. ..+||+...|..-.+.+. +..|+ ..+--..+.+++|++..+.... |-.++.+..+.+..-+
T Consensus 301 Hlh~LSlrwHL~----rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~ 375 (790)
T KOG0056|consen 301 HLHNLSLRWHLN----RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYV 375 (790)
T ss_pred HHHhhceeeeec----ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhhe
Confidence 555555555543 348999888877666555 32222 2222233455555554444443 3555555566555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000904 467 NAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNA----IEILRNVEYKWLSAVQLRKAYNTFLFWS 542 (1232)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~----i~~~R~~E~~~l~k~~~~~~~~~~~~~~ 542 (1232)
...++..-.++|+++...-.+--....+.|-|..+||.|+-|+.-.++ |.+..+.|-|.+....++......++..
T Consensus 376 Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l 455 (790)
T KOG0056|consen 376 TIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL 455 (790)
T ss_pred eeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 666777778888887666555556667788899999999999866655 4445555665555444444433333221
Q ss_pred hhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCC-CCcchhcccCCC
Q 000904 543 SPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPE-LQSMNIRQKGNI 621 (1232)
Q Consensus 543 ~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e-~~~~~~~~~~~~ 621 (1232)
. +....-+.+|.+..+.+|.++-.-.....-.|.+||+.+-....++....+-.+|+.+.+++++ ..+. ..-.|-.
T Consensus 456 g--ll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~-P~a~pl~ 532 (790)
T KOG0056|consen 456 G--LLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDL-PGAPPLK 532 (790)
T ss_pred H--HhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcC-CCCCCcc
Confidence 1 1222234455566677999987666777788999999999999999999999999999997644 3322 1112211
Q ss_pred CCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 622 ENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 622 ~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
. ..+.|+++|++|+|++ .+|+|+||||++++|+.+|+|||+|+||||+++.+.+..+..+|.+.
T Consensus 533 ~-~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~ 596 (790)
T KOG0056|consen 533 V-TQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSIT 596 (790)
T ss_pred c-cCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEE
Confidence 1 5678999999999975 47999999999999999999999999999999999999999999884
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-24 Score=281.02 Aligned_cols=213 Identities=23% Similarity=0.362 Sum_probs=186.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC-ChHhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL-GLHDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i-~l~~LR~~i 1063 (1232)
.+..+|++..|+.... +.+++|+.|++||..|+-|+|||||||.++++.|...|++|++.++|.|++.- +..+.|+.+
T Consensus 564 ~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred eEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 4788999999975444 89999999999999999999999999999999999999999999999999764 444689999
Q ss_pred EEEccCCCCCcc-cHHhccCCCCC---CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLSQ---HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~~---~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
||.||+-.+++. |.||.+..+.. .. ++.+...|+.++|.+..... -.++|||+|+||++|-
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~-----------~~~ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQ-----------VRTYSGGNKRRLSFAI 711 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccc-----------hhhCCCcchhhHHHHH
Confidence 999999887754 99999976541 11 34477888888887765432 2479999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCc-EEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEFADC-TVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~-TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|++-+|++++|||||+|+|+.+++.+-++|++..+++ .+|..||-++.... |||+..|.+|++.-.|+|++|-.
T Consensus 712 alig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 712 ALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 9999999999999999999999999999999877655 99999999999987 99999999999999999999953
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=235.03 Aligned_cols=181 Identities=17% Similarity=0.244 Sum_probs=136.4
Q ss_pred CcEEEEECCCCCChHHHHHHHhccccCC-ccEEEECCe-eCCCCC-hHhh-hccEEEEccCCCC---------C-cccHH
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRLVEPA-GGKILVDGI-DISKLG-LHDL-RSRFGIIPQDPTL---------F-NGTVR 1078 (1232)
Q Consensus 1013 GekvgIVGrtGSGKSTLl~~L~rl~ep~-~G~I~IDG~-dI~~i~-l~~L-R~~i~iVpQdP~L---------F-~gTIr 1078 (1232)
...++|||+||||||||+.+|.+++.++ .|++..+|. |+-..+ .... +.++++++|+|.. . .-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5589999999999999999999999876 568888876 432211 1122 4589999999631 1 34677
Q ss_pred hccCCCC---------CCCHHHHHHHHHHcCCc--H--------HHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc-
Q 000904 1079 YNLDPLS---------QHTDQEIWEVLAKCHLG--E--------AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL- 1138 (1232)
Q Consensus 1079 ~NLdp~~---------~~sd~eI~~aL~~~~L~--~--------~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL- 1138 (1232)
+|+.... ....+++.++|+.+++. + .|.+.-.. .......+.+||+|||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 6663211 12457889999999985 0 11111011 11233456789999999999999997
Q ss_pred ---cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEe
Q 000904 1139 ---RRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAIS 1194 (1232)
Q Consensus 1139 ---~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~ 1194 (1232)
++|++++|||||++||.++.+.+.+.|++..++.|+|+||||.+.+..||+|+-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 57899999999999999999999999998777889999999988888899998653
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=227.18 Aligned_cols=162 Identities=22% Similarity=0.229 Sum_probs=127.3
Q ss_pred eEEEeCCcEEEEECCCCCChHHHHHHH----hccccCCccEEEECCeeCCCCChHhhhccEEEEccCC-----CCCcc-c
Q 000904 1007 SCTFEGGHKIGIVGRTGSGKTTLIGAL----FRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDP-----TLFNG-T 1076 (1232)
Q Consensus 1007 sl~I~~GekvgIVGrtGSGKSTLl~~L----~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP-----~LF~g-T 1076 (1232)
++++.+| .++|+|+||||||||+.+| .|...|..|.+.-|...+. ....+.++++++|++ ..+.. |
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~---~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR---EGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh---CCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4567778 9999999999999999998 5999998887763322222 234567899999998 33322 7
Q ss_pred HHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH------HHHHHHHccCCCEEEEeccC
Q 000904 1077 VRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL------FCLGRALLRRSRILVLDEAT 1150 (1232)
Q Consensus 1077 Ir~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr------l~LARALL~~~kILILDEaT 1150 (1232)
+.+|+... .++++.+.+ .+.+.+||+||||| ++||||+..+|++++|||||
T Consensus 93 ~~~~~~~~---~~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~ 149 (204)
T cd03240 93 ILENVIFC---HQGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPT 149 (204)
T ss_pred Hhhceeee---chHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCc
Confidence 77787531 233443332 33456899999996 79999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHHHhcC--CcEEEEEecChhhhhhcCeEEEEeC
Q 000904 1151 ASIDNATDM-ILQKTIRAEFA--DCTVITVAHRIPTVMDCTMVLAISD 1195 (1232)
Q Consensus 1151 s~LD~~T~~-~Iq~~L~~~~~--~~TVI~IAHrl~ti~~~DrVlVL~~ 1195 (1232)
++||+++.. .+.+.|++..+ +.|+|+|||+++.+..||+|++|++
T Consensus 150 ~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 150 TNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred cccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 999999988 99999987654 6799999999999888999999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-24 Score=230.12 Aligned_cols=180 Identities=19% Similarity=0.217 Sum_probs=132.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhh-ccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLR-SRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR-~~i 1063 (1232)
.++++|.. +|. ...+++++++ +.+||+|||||||||++++|. .++|.+.. ..| +++
T Consensus 5 ~l~l~nfk-~~~--~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYA--GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKKL 61 (212)
T ss_pred EEEEECcc-cCC--CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----HhhhhhH
Confidence 47778876 674 3468898887 899999999999999999996 33454432 233 679
Q ss_pred EEEccCCCCCcc-cHHhccCCCCCCCHHHHHHHHHHcCCc-------------HHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLG-------------EAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~~~sd~eI~~aL~~~~L~-------------~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
++++|++.+++. |.++++..+....+- +.|+..++. ..+.++|++.++. ...+|+||||
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~----~~~lS~G~~~ 134 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEIIDK---PLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN----ISNLSGGEKT 134 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCCCH---HHHHHCCcCCCCCceEEcCCcEEEeeccccccccc----hhhcCHHHHH
Confidence 999999877654 667666544322110 011111111 0122233444433 4579999999
Q ss_pred HHHHHHHHcc----CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEe
Q 000904 1130 LFCLGRALLR----RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAIS 1194 (1232)
Q Consensus 1130 rl~LARALL~----~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~ 1194 (1232)
|++||||++. +|++++|||||+++|+.+...+.+.|++..++.|+|+|||+.+....||+|++|.
T Consensus 135 r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~ 203 (212)
T cd03274 135 LSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIY 203 (212)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEE
Confidence 9999999963 5899999999999999999999999998767889999999987777799999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-23 Score=261.80 Aligned_cols=111 Identities=21% Similarity=0.336 Sum_probs=98.1
Q ss_pred CCcc-cccCCCCCCChhHHHHHHHHHHHccCC---CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh
Q 000904 1111 GLDS-LVVEDGSNWSMGQRQLFCLGRALLRRS---RILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1111 gLdt-~v~e~G~nLSgGQRQrl~LARALL~~~---kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~ 1185 (1232)
||+. .++.....||||||||+.|||+|+++| +++||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 6655 357777899999999999999999999 9999999999999999999999998753 4789999999999998
Q ss_pred hcCeEEEE------eCCEEEEecChhHHHhhcCCHHHHHHHH
Q 000904 1186 DCTMVLAI------SDGKLAEYDEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1186 ~~DrVlVL------~~G~vvE~g~p~~Ll~~~~~~f~~l~~~ 1221 (1232)
.||+|++| ++|+|++.|+|+++.+++.+.=.+..+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l~~ 939 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYLKP 939 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHHHH
Confidence 89999999 7999999999999998877665555543
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-24 Score=212.60 Aligned_cols=207 Identities=20% Similarity=0.280 Sum_probs=167.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++||+..-| |-.+|.++..||.+=+|||||+|||||+..|.|+.+ .+|+|.++|.|++....++|.++=+|
T Consensus 4 ~qln~v~~~tR------L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 4 MQLNDVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeecccccccc------ccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHH
Confidence 56677776432 556788999999999999999999999999999985 79999999999999999999888889
Q ss_pred EccCCC-CCcccHHhccCCCCC--CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc---
Q 000904 1066 IPQDPT-LFNGTVRYNLDPLSQ--HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR--- 1139 (1232)
Q Consensus 1066 VpQdP~-LF~gTIr~NLdp~~~--~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~--- 1139 (1232)
..|+.. .|...|..-+..... ..-++|.++.++.++. ..++..-++|||||.||+-||-..+.
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~-----------DKL~Rs~~qLSGGEWQRVRLAav~LQv~P 145 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALD-----------DKLGRSTNQLSGGEWQRVRLAAVVLQITP 145 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhccc-----------chhhhhhhhcCcccceeeEEeEEEEEecC
Confidence 888653 666666665543221 1123455555544444 44444556899999999999999885
Q ss_pred ----CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1140 ----RSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIP-TVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1140 ----~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~-ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
..++|++|||-++||.+.+..+-+.|.+.. .|.|||+-.||++ |++.+|+++.+..|++...|+.+|.+..
T Consensus 146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 248999999999999999988888887643 5889999999996 6788999999999999999999999875
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-20 Score=209.42 Aligned_cols=377 Identities=15% Similarity=0.150 Sum_probs=278.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 298 PSVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRL 377 (1232)
Q Consensus 298 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1232)
.....+....+++.++..+++..+-.++..++|+.+-++-|-+=...+ ...-..+.+.....++++.+.+.--.+...|
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s-~~TLv~Ltvlal~ly~~~glLd~iR~~~l~R 89 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRS-VPTLVMLTVLALGLYAFQGLLDAIRSRVLVR 89 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777778888888888888899999999876665554432221 1223445555556667777777767788889
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 378 IGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW-----FHQIWTTSVQLCIALIILFHAVGLA 452 (1232)
Q Consensus 378 ~~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~-----~~~~w~~plqi~~~~~~L~~~lG~~ 452 (1232)
+|.++-..|-.-||.-+++.....+......+.. .|.+.+..|... +.+.--+|+=+.++ |++.-.+|+.
T Consensus 90 ig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~-fl~Hp~lG~~ 164 (580)
T COG4618 90 IGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVI-FLFHPWLGLI 164 (580)
T ss_pred HHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999998874443332222233443 477777665422 23333366655544 6667778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 453 TIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLR 532 (1232)
Q Consensus 453 ~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~ 532 (1232)
+++|.++++++..+|-.++++ --++-.+..-+|....+..++|..+|+.+|......++-.+...+-+++..+....
T Consensus 165 a~~ga~iLv~la~ln~~~t~~---p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~ 241 (580)
T COG4618 165 ALAGAIILVVLALLNERATRK---PLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDR 241 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999998888888887666554 34556777888999999999999999999999999999888888888777777666
Q ss_pred HHHHHHHHhHhhHH--HHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 000904 533 KAYNTFLFWSSPVL--VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPEL 610 (1232)
Q Consensus 533 ~~~~~~~~~~~p~~--v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~ 610 (1232)
......+.-..-.+ +.++..|+|..+.++.|++.++..--+..=.-.|+-..-..=.++..|+.|.+|+.++|....-
T Consensus 242 ~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~ 321 (580)
T COG4618 242 NGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPA 321 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 65554444333333 3445567788888999999998775444444568888888889999999999999999976332
Q ss_pred CcchhcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 611 QSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 611 ~~~~~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.... -..|. .++.+.++++++.-| ..++|+|+||||++++||-++|+||||||||||.++|.|..+|.+|.|.
T Consensus 322 ~~~~-m~LP~---P~g~L~Ve~l~~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VR 394 (580)
T COG4618 322 AAER-MPLPA---PQGALSVERLTAAPP-GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR 394 (580)
T ss_pred ccCC-CCCCC---CCceeeEeeeeecCC-CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEE
Confidence 2211 12332 568899999999765 4568999999999999999999999999999999999999999999984
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-22 Score=260.20 Aligned_cols=208 Identities=22% Similarity=0.240 Sum_probs=146.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHH---------HHhccccCCcc--------EEEEC
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIG---------ALFRLVEPAGG--------KILVD 1047 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~---------~L~rl~ep~~G--------~I~ID 1047 (1232)
.++++|++. ..|+|+|++|++||.+||+|+||||||||++ .|.|...+..+ -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 577777752 2699999999999999999999999999999 55554333211 24555
Q ss_pred CeeCCCCC----h------Hhhh---------cc-----EEEEccC-----C-C--------------------------
Q 000904 1048 GIDISKLG----L------HDLR---------SR-----FGIIPQD-----P-T-------------------------- 1071 (1232)
Q Consensus 1048 G~dI~~i~----l------~~LR---------~~-----i~iVpQd-----P-~-------------------------- 1071 (1232)
-.+|..-+ . +++| ++ ..+.+|. | .
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 54443211 1 1444 11 2233443 1 0
Q ss_pred ------CCc-ccHHhccCCCCC------CCHHHHHH---HHHHcCCcHHHHhhccCCccc-ccCCCCCCChhHHHHHHHH
Q 000904 1072 ------LFN-GTVRYNLDPLSQ------HTDQEIWE---VLAKCHLGEAVREKENGLDSL-VVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1072 ------LF~-gTIr~NLdp~~~------~sd~eI~~---aL~~~~L~~~i~~~p~gLdt~-v~e~G~nLSgGQRQrl~LA 1134 (1232)
.+. -||.|||+.... .+.+++.+ +|+.+ ||+.. .+....+||||||||++||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~v-----------GL~~l~l~q~~~tLSGGE~QRV~LA 821 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSL-----------GLDYLPLGRPLSSLSGGEIQRLKLA 821 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHc-----------CCcchhhcCccccCCHHHHHHHHHH
Confidence 111 145555542110 01122222 22222 55543 4666778999999999999
Q ss_pred HHHc---cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCeEEEEe------CCEEEEecCh
Q 000904 1135 RALL---RRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMDCTMVLAIS------DGKLAEYDEP 1204 (1232)
Q Consensus 1135 RALL---~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~------~G~vvE~g~p 1204 (1232)
|||+ ++|++|||||||++||.++.+.+.+.|++.. .+.|||+|+|+++.+..||+|++|+ +|++++.|+|
T Consensus 822 raL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 822 YELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred HHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 9998 5999999999999999999999999998753 4789999999999997799999996 7999999999
Q ss_pred hHHHhh
Q 000904 1205 MKLMKR 1210 (1232)
Q Consensus 1205 ~~Ll~~ 1210 (1232)
++++..
T Consensus 902 eel~~~ 907 (1809)
T PRK00635 902 EELIHL 907 (1809)
T ss_pred HHHHhc
Confidence 999863
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-22 Score=223.23 Aligned_cols=181 Identities=18% Similarity=0.182 Sum_probs=130.0
Q ss_pred EEEEECCCCCChHHHHHHHhccccCCccEEEECCee--C-----CCCChHhhhccEEEEccCCC--CCcccHHhccCCC-
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGID--I-----SKLGLHDLRSRFGIIPQDPT--LFNGTVRYNLDPL- 1084 (1232)
Q Consensus 1015 kvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~d--I-----~~i~l~~LR~~i~iVpQdP~--LF~gTIr~NLdp~- 1084 (1232)
.++|+|+||||||||+.+|.++..+..|++..++.+ | ...+.....-.+.+..|++. .+..+++++...+
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ 103 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR 103 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence 899999999999999999999998878887665421 1 11111233445566666653 4455554433221
Q ss_pred --C-CCCHHHHHHHHHHcCCcHHHHh--hccCCcccc-c--------CCCCCCChhHHHHHHHHHHHcc----CCCEEEE
Q 000904 1085 --S-QHTDQEIWEVLAKCHLGEAVRE--KENGLDSLV-V--------EDGSNWSMGQRQLFCLGRALLR----RSRILVL 1146 (1232)
Q Consensus 1085 --~-~~sd~eI~~aL~~~~L~~~i~~--~p~gLdt~v-~--------e~G~nLSgGQRQrl~LARALL~----~~kILIL 1146 (1232)
+ ..+.+++.+.++.+++..+... .++|--+.+ . ....+||+|||||++||||++. +|++++|
T Consensus 104 ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lll 183 (247)
T cd03275 104 INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVL 183 (247)
T ss_pred ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 1 3567788899999998532111 111111111 1 1236899999999999999986 4899999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhhcCeEEEEeC
Q 000904 1147 DEATASIDNATDMILQKTIRAEFA-DCTVITVAHRIPTVMDCTMVLAISD 1195 (1232)
Q Consensus 1147 DEaTs~LD~~T~~~Iq~~L~~~~~-~~TVI~IAHrl~ti~~~DrVlVL~~ 1195 (1232)
||||++||..+...+.+.|++..+ +.|+|+||||.+.+..||++++|..
T Consensus 184 DEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 184 DEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred ecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 999999999999999999998654 7899999999998888999999863
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-22 Score=203.23 Aligned_cols=225 Identities=20% Similarity=0.315 Sum_probs=179.2
Q ss_pred EEEEeeEeEec--CCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC----CccEEEECCeeCCCCChHhh
Q 000904 986 VDICDLQIRYR--PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP----AGGKILVDGIDISKLGLHDL 1059 (1232)
Q Consensus 986 I~~~nvs~~Y~--~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep----~~G~I~IDG~dI~~i~l~~L 1059 (1232)
++++|++..+. .+.-.+.+++|++.+.||.-|+||.||||||-+++++.|..+- +.-+..+|++|+-+++.++.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 34556665552 3334589999999999999999999999999999999998863 45677788999999998887
Q ss_pred hc----cEEEEccCCCC-Ccc--cH----HhccCCCCC----------CCHHHHHHHHHHcCCcHHHHhhccCCcccccC
Q 000904 1060 RS----RFGIIPQDPTL-FNG--TV----RYNLDPLSQ----------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVE 1118 (1232)
Q Consensus 1060 R~----~i~iVpQdP~L-F~g--TI----r~NLdp~~~----------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e 1118 (1232)
|+ .|++|+|||.- .+. +| -+|+ |+-. ....+..+.|.++|++|.-+-+ ..
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~I-P~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM-~S------- 154 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNI-PAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM-RS------- 154 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhC-ccccccchHhhhhchhHHHHHHHHHHhccccHHHHH-Hh-------
Confidence 75 46799999952 222 22 2454 2211 1345667889999998653322 11
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeC
Q 000904 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISD 1195 (1232)
Q Consensus 1119 ~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~ 1195 (1232)
-+..|--||-|.+.||-|+..+|++||-||||+++|+.|...|.+.|.... .+.|++.|+||+.++.. ||+|-||--
T Consensus 155 YP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYC 234 (330)
T COG4170 155 YPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYC 234 (330)
T ss_pred CcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEe
Confidence 234577899999999999999999999999999999999999999987643 46899999999999988 999999999
Q ss_pred CEEEEecChhHHHhhcCCHHHHHH
Q 000904 1196 GKLAEYDEPMKLMKREGSLFGQLV 1219 (1232)
Q Consensus 1196 G~vvE~g~p~~Ll~~~~~~f~~l~ 1219 (1232)
|+-+|.+..++|++.+...|.+-.
T Consensus 235 GQ~~ESa~~e~l~~~PhHPYTqAL 258 (330)
T COG4170 235 GQTVESAPSEELVTMPHHPYTQAL 258 (330)
T ss_pred cccccccchhHHhcCCCCchHHHH
Confidence 999999999999998887776543
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-21 Score=245.71 Aligned_cols=97 Identities=18% Similarity=0.305 Sum_probs=87.9
Q ss_pred CCcc-cccCCCCCCChhHHHHHHHHHHHcc---CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh
Q 000904 1111 GLDS-LVVEDGSNWSMGQRQLFCLGRALLR---RSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1111 gLdt-~v~e~G~nLSgGQRQrl~LARALL~---~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~ 1185 (1232)
||+. .++.....||||||||++|||+|++ +|+++||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 6655 3677788999999999999999997 589999999999999999999999998753 4789999999999998
Q ss_pred hcCeEEEE------eCCEEEEecChhHH
Q 000904 1186 DCTMVLAI------SDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1186 ~~DrVlVL------~~G~vvE~g~p~~L 1207 (1232)
.||+|++| ++|+|++.|+|+++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89999999 79999999999886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-18 Score=191.41 Aligned_cols=370 Identities=16% Similarity=0.114 Sum_probs=239.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 000904 302 RTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKIL-ESLSQRQWYFRSRLIGL 380 (1232)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 380 (1232)
-.++|.+++.++....+.+...+. +-.++-.+-+++-+.+...-.-..+.+++....++ +.+++.--.+..++.-.
T Consensus 5 l~llr~nr~~~i~~~a~s~a~g~~---g~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~lg~t~~gq~~I~ 81 (546)
T COG4615 5 LLLLRQNRWPFISVMALSLASGAL---GIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIY 81 (546)
T ss_pred HHHhcccccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777887777665555544433 33333333333322221111111122222222222 22334445566666777
Q ss_pred HHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 381 KVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVI 460 (1232)
Q Consensus 381 ~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~ 460 (1232)
++|..++..|..--+. ...+.+++.+..-.+.|+..|.-.+..+.++-.+.+-+..+...|++.-+...+..++.+
T Consensus 82 klr~~~~~kil~tple----rier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~i 157 (546)
T COG4615 82 KLRSEFIKKILDTPLE----RIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWI 157 (546)
T ss_pred HHHHHHHHHHhcCHHH----HHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888877766655443 223356788999999999999877777776666666666677777776566777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhH--HHHHH-HHHHHHHHHHHHHHHHHHHHHH-
Q 000904 461 MITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWET--HFKNA-IEILRNVEYKWLSAVQLRKAYN- 536 (1232)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~--~f~~~-i~~~R~~E~~~l~k~~~~~~~~- 536 (1232)
++.+..+.+..++..++..+..+..|+=.+..+.++.|-|-+|+..=.. .+.+. +...++.|- +..+...+.
T Consensus 158 vv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~----~~~~~n~f~~ 233 (546)
T COG4615 158 VVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH----HIIRANTFHL 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh----hhhhhhHHHH
Confidence 8888889888888888888889999999999999999999999876322 22222 222333222 112222221
Q ss_pred HHHHhHhhHHHHHHHHHHHHHhCCCc-ChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchh
Q 000904 537 TFLFWSSPVLVSTATFGACYFLNVPL-YASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNI 615 (1232)
Q Consensus 537 ~~~~~~~p~~v~~~tf~~~~~~~~~L-t~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 615 (1232)
....|+.-++.+++....|+...-.. +...+-|.....-.|+.|+.++...++.+.+|+++++||.++=..|+..+-..
T Consensus 234 la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~ 313 (546)
T COG4615 234 LAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR 313 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCC
Confidence 22334444443333333222221111 11234444444566899999999999999999999999999866555433211
Q ss_pred -cccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 616 -RQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 616 -~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
+..| +=..||++|+.|+|++. ..-+.-||++|++||+|-++|.|||||||+++.+.|.+.|.+|+|.
T Consensus 314 ~q~~p----~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ 381 (546)
T COG4615 314 PQAFP----DWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (546)
T ss_pred CCcCC----cccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCcee
Confidence 1111 23469999999999753 2678899999999999999999999999999999999999999884
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-22 Score=227.26 Aligned_cols=184 Identities=25% Similarity=0.413 Sum_probs=140.2
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCee--CCCCC------
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGID--ISKLG------ 1055 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~d--I~~i~------ 1055 (1232)
.+|..+|++..|+ .+..|++-++++..|-+.|+|||||+|||||+++|.. |.|.+=.++ .....
T Consensus 79 ~Di~~~~fdLa~G--~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~ 150 (582)
T KOG0062|consen 79 KDIHIDNFDLAYG--GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQS 150 (582)
T ss_pred cceeeeeeeeeec--chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhh
Confidence 4689999999996 4568999999999999999999999999999999987 433322110 00000
Q ss_pred -hHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHH-HHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHH
Q 000904 1056 -LHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWE-VLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCL 1133 (1232)
Q Consensus 1056 -l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~-aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~L 1133 (1232)
++.=-.+.-++.||+.+-.+ .+-+||.. +|.-.|+.+..+..|-+ .||||=|-|++|
T Consensus 151 ~l~~D~~~~dfl~~e~~l~~~-----------~~l~ei~~~~L~glGFt~emq~~pt~----------slSGGWrMrlaL 209 (582)
T KOG0062|consen 151 VLESDTERLDFLAEEKELLAG-----------LTLEEIYDKILAGLGFTPEMQLQPTK----------SLSGGWRMRLAL 209 (582)
T ss_pred hhhccHHHHHHHHhhhhhhcc-----------chHHHHHHHHHHhCCCCHHHHhcccc----------ccCcchhhHHHH
Confidence 00000111223333322211 14467777 89999998888888764 899999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEE
Q 000904 1134 GRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKL 1198 (1232)
Q Consensus 1134 ARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~v 1198 (1232)
||||+.+|+||+|||||++||...-.-+..-|.+. ..|+|+|+||.+++.. |..|+.+++-|+
T Consensus 210 ARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 210 ARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKL 273 (582)
T ss_pred HHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999874 4899999999999987 888888876554
|
|
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-18 Score=193.45 Aligned_cols=269 Identities=20% Similarity=0.183 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 313 FMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGF-KYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIY 391 (1232)
Q Consensus 313 ~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~-~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~iy 391 (1232)
++..++.++..++..+.|++++.+++.+.+++.. ....+.++..+++..++.......+.+...+.+.++|..+...+|
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999998765443 445666666666677777777777777789999999999999999
Q ss_pred HHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000904 392 KKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGL-ATIAALVVIMITVLCNAPL 470 (1232)
Q Consensus 392 ~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~~~~~~~~~~~~~ 470 (1232)
+|.++++....+++++|+++|.+++|++++.+........+..++..+++...+...++| .+++.+++.++..++...+
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhh
Confidence 999999998777889999999999999999998876665555555445554555555677 6777777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH--HHH
Q 000904 471 AKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPV--LVS 548 (1232)
Q Consensus 471 ~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~--~v~ 548 (1232)
.|+.++..++..++.+++.+.++|.++|+|+||.|++|+.+.+++++.+++..+..+|.....+....+...... .+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVL 241 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998887776666666555554443333222 355
Q ss_pred HHHHHHHH-HhCCCcChhhHHHHHHHHHHHHHHH
Q 000904 549 TATFGACY-FLNVPLYASNVFTFVATLRLVQDPI 581 (1232)
Q Consensus 549 ~~tf~~~~-~~~~~Lt~~~vFt~lalf~~l~~pl 581 (1232)
++.++.+. ...+.+|++++++.+.+++.+..|+
T Consensus 242 ~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 242 ILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 56678888 7889999999999999999999986
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-21 Score=222.63 Aligned_cols=217 Identities=21% Similarity=0.310 Sum_probs=146.8
Q ss_pred CCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEEC--CeeCCCCChHh
Q 000904 981 PVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD--GIDISKLGLHD 1058 (1232)
Q Consensus 981 p~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~ID--G~dI~~i~l~~ 1058 (1232)
|....|.++|+++.|.+ .++++|++|++++|++.||+|+|||||||+++++.|-..|..-++.+- ..++..-..+.
T Consensus 71 ~~s~dvk~~sls~s~~g--~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 71 PISRDVKIESLSLSFHG--VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQA 148 (614)
T ss_pred cccccceeeeeeeccCC--ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHH
Confidence 33456999999999963 468999999999999999999999999999999999998865544331 11111000000
Q ss_pred hhccEEEEccCCCCCcccHH-------hccCCC-CC---CCHHHHHHHHHHcCCcHHHHhh-----ccCCc-ccccCCCC
Q 000904 1059 LRSRFGIIPQDPTLFNGTVR-------YNLDPL-SQ---HTDQEIWEVLAKCHLGEAVREK-----ENGLD-SLVVEDGS 1121 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~gTIr-------~NLdp~-~~---~sd~eI~~aL~~~~L~~~i~~~-----p~gLd-t~v~e~G~ 1121 (1232)
+.. -+.+..+.| |+++-. .+ ..-+++++-+...+...+-.+. ..|.. ......-.
T Consensus 149 v~~--------v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~ 220 (614)
T KOG0927|consen 149 VQA--------VVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVK 220 (614)
T ss_pred HHH--------HhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhh
Confidence 000 011111111 122111 00 1112345545444443322111 01221 12223346
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCc-EEEEEecChhhhhh-cCeEEEEeCCEEE
Q 000904 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADC-TVITVAHRIPTVMD-CTMVLAISDGKLA 1199 (1232)
Q Consensus 1122 nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~-TVI~IAHrl~ti~~-~DrVlVL~~G~vv 1199 (1232)
+||||||.|++|||||+.+|.+|+|||||++||.++..-+.+-|.+. +. |+++++|.-+++-+ |..|+.|++++.+
T Consensus 221 ~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~--d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~ 298 (614)
T KOG0927|consen 221 DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY--DRIILVIVSHSQDFLNGVCTNIIHLDNKKLI 298 (614)
T ss_pred ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc--cCceEEEEecchhhhhhHhhhhheeccccee
Confidence 89999999999999999999999999999999999999999999873 45 99999999999988 9999999999966
Q ss_pred Eec-ChhHHHh
Q 000904 1200 EYD-EPMKLMK 1209 (1232)
Q Consensus 1200 E~g-~p~~Ll~ 1209 (1232)
-|+ +.++...
T Consensus 299 ~y~Gnydqy~~ 309 (614)
T KOG0927|consen 299 YYEGNYDQYVK 309 (614)
T ss_pred eecCCHHHHhh
Confidence 554 4455543
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-21 Score=207.96 Aligned_cols=168 Identities=21% Similarity=0.215 Sum_probs=120.1
Q ss_pred ceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEEC--Ce---eCCCCChHhhhccEEEEccCCCCCcccH
Q 000904 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD--GI---DISKLGLHDLRSRFGIIPQDPTLFNGTV 1077 (1232)
Q Consensus 1003 L~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~ID--G~---dI~~i~l~~LR~~i~iVpQdP~LF~gTI 1077 (1232)
++++++++.+| ..+|+|+||||||||+.+|.-... |+.... |. ++-..+ .-...+.+.+|+..++.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~--- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA--- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCC--CCeEEEEEEEEcCCccC---
Confidence 35667777776 668999999999999999874332 222111 22 111111 12456888998876655
Q ss_pred HhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH----ccCCCEEEEeccCCCC
Q 000904 1078 RYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL----LRRSRILVLDEATASI 1153 (1232)
Q Consensus 1078 r~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL----L~~~kILILDEaTs~L 1153 (1232)
| +....+++++.++++. .........+||+|||||++||||+ +.+|++++|||||+++
T Consensus 83 --~--~~~~~~~~~~~~~l~~--------------~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~gl 144 (198)
T cd03276 83 --N--PLCVLSQDMARSFLTS--------------NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFM 144 (198)
T ss_pred --C--cCCHHHHHHHHHHhcc--------------ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCccccc
Confidence 2 2222233455555544 1112334568999999999999999 6899999999999999
Q ss_pred CHHHHHHHHHHHHHhcC----CcEEEEEecChhhhhhcCeEEEEeCCE
Q 000904 1154 DNATDMILQKTIRAEFA----DCTVITVAHRIPTVMDCTMVLAISDGK 1197 (1232)
Q Consensus 1154 D~~T~~~Iq~~L~~~~~----~~TVI~IAHrl~ti~~~DrVlVL~~G~ 1197 (1232)
|..+...+.+.|++... ++|+|+++|+++.+.++|+|-||..|+
T Consensus 145 D~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 145 DMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99999999998887532 358999999999999999999998653
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=170.62 Aligned_cols=215 Identities=22% Similarity=0.277 Sum_probs=155.0
Q ss_pred cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC-CChHhhhc
Q 000904 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK-LGLHDLRS 1061 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~-i~l~~LR~ 1061 (1232)
.+.|++.++.|+|.... |++-|+|++++.|.+.-+||.||||||||+++|.|-.-...|.|.+.|.+--. -++.. ..
T Consensus 11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~-Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLES-SG 88 (291)
T ss_pred cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccc-cC
Confidence 46799999999997654 68999999999999999999999999999999999877777999999865421 11100 11
Q ss_pred cEEEEccCC---CCCcccHHhccCCC-CCCCHHHHHHHHHHcCCcHHHHh--hccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1062 RFGIIPQDP---TLFNGTVRYNLDPL-SQHTDQEIWEVLAKCHLGEAVRE--KENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1062 ~i~iVpQdP---~LF~gTIr~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~--~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
..+|.--+= ..+.|.| |. ++.+-++ .+.-++-.++.++ +-.=||-.+.-+-+..|-|||+|+.|+.
T Consensus 89 dl~YLGgeW~~~~~~agev-----plq~D~sae~---mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicM 160 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEV-----PLQGDISAEH---MIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICM 160 (291)
T ss_pred ceeEecccccccccccccc-----cccccccHHH---HHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHH
Confidence 233332221 0111100 11 1223222 2333333333211 1122455555555788999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEE---ecChhHH
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAE---YDEPMKL 1207 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE---~g~p~~L 1207 (1232)
.||+.=++|+|||-|-.||.-..+.+.+.++++. .++||+..||=.+-+.+ ..+++.|.+|+++. ++.-.|+
T Consensus 161 GLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 161 GLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred hcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchhhhh
Confidence 9999999999999999999999999999998754 58999999999888887 78999999999987 4444443
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-18 Score=179.99 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=67.7
Q ss_pred CCChhHHHHHHHHHHHc----cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhhcCeEEEEeC
Q 000904 1122 NWSMGQRQLFCLGRALL----RRSRILVLDEATASIDNATDMILQKTIRAEFA-DCTVITVAHRIPTVMDCTMVLAISD 1195 (1232)
Q Consensus 1122 nLSgGQRQrl~LARALL----~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~-~~TVI~IAHrl~ti~~~DrVlVL~~ 1195 (1232)
.||+|||||++|||++. ++|+++++||||+++|....+.+.+.|++..+ ++|+|+|||+.+.+..+|++++++.
T Consensus 94 ~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 94 ILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 39999999999999985 79999999999999999999999999987644 5899999999999988999999875
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-16 Score=176.29 Aligned_cols=300 Identities=18% Similarity=0.199 Sum_probs=203.8
Q ss_pred HHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000904 387 TAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWF-HQIWTTSVQLCIALIILFHAVGLATIA-ALVVIMITV 464 (1232)
Q Consensus 387 ~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~-~~~w~~plqi~~~~~~L~~~lG~~~l~-gl~~~~~~~ 464 (1232)
.-..|+..+.||-.-..+..+|.+.--|.--.+-|+.+.+++ ..+--..+++.+..+++|+..||.... .++.+++..
T Consensus 18 a~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~ 97 (497)
T COG5265 18 AYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYL 97 (497)
T ss_pred HHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 334566666666543334456665555555555566655544 233345579999999999999985544 444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 000904 465 LCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAV----QLRKAYNTFLF 540 (1232)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~----~~~~~~~~~~~ 540 (1232)
.+.......--.++++..++..+.-...-+.|-|-.+||.|+-|+.+.++..+..+.-.+.-.|. .++......++
T Consensus 98 ~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~ 177 (497)
T COG5265 98 LFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIF 177 (497)
T ss_pred HhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44444444455555555555555556677889999999999999999888766555433333332 22222222222
Q ss_pred hHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCC
Q 000904 541 WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGN 620 (1232)
Q Consensus 541 ~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~ 620 (1232)
.. -+....+-+..-+..+.+|.++.--.-++...+..|++.+....+.+-|++.-.++..+-+..+--..++..-.+-
T Consensus 178 ~~--~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L 255 (497)
T COG5265 178 ST--GLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPL 255 (497)
T ss_pred HH--HHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccc
Confidence 21 1122223333345568899999999999999999999999999999999999999998888654222222111110
Q ss_pred CCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccccc
Q 000904 621 IENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690 (1232)
Q Consensus 621 ~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~~ 690 (1232)
.....+.|.++|++|.|.+ .+|+|+|+||++++|+++++||++|+||||+++.|.+.+++.+|.|..+
T Consensus 256 ~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id 323 (497)
T COG5265 256 WPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITID 323 (497)
T ss_pred cccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEc
Confidence 0014568999999999975 4799999999999999999999999999999999999999999998543
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-18 Score=185.47 Aligned_cols=144 Identities=13% Similarity=0.101 Sum_probs=106.3
Q ss_pred ceeeeEEEeCCc-EEEEECCCCCChHHHHHHHh--------ccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCC
Q 000904 1003 LKGISCTFEGGH-KIGIVGRTGSGKTTLIGALF--------RLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLF 1073 (1232)
Q Consensus 1003 L~~vsl~I~~Ge-kvgIVGrtGSGKSTLl~~L~--------rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF 1073 (1232)
..++|+++.+|+ +++|+||||||||||++++. |++-|....+ .+++++|.-..+
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~l 79 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFADI 79 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEec
Confidence 457899999997 59999999999999999988 5554432111 233444442111
Q ss_pred cccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCC
Q 000904 1074 NGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI 1153 (1232)
Q Consensus 1074 ~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~L 1153 (1232)
. .+..+.++-+.+|+|+||+..+++++ .+|+++++||||+++
T Consensus 80 g-------------------------------------~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~gl 121 (200)
T cd03280 80 G-------------------------------------DEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGT 121 (200)
T ss_pred C-------------------------------------chhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCC
Confidence 0 00011122357999999999999984 899999999999999
Q ss_pred CHHHHHHHH-HHHHHhc-CCcEEEEEecChhhhhhcCeEEEEeCCEEEEe
Q 000904 1154 DNATDMILQ-KTIRAEF-ADCTVITVAHRIPTVMDCTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1154 D~~T~~~Iq-~~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~ 1201 (1232)
|+++...+. ..+++.. .++|+|++||+.+....||++++|++|+++..
T Consensus 122 D~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 122 DPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 999877764 4555432 37899999999776667999999999999755
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-18 Score=193.44 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=69.4
Q ss_pred CCChhHHHHHHHHHHHcc----CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCE
Q 000904 1122 NWSMGQRQLFCLGRALLR----RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGK 1197 (1232)
Q Consensus 1122 nLSgGQRQrl~LARALL~----~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~ 1197 (1232)
+||+|||||++|||+++. +|+++++||||+++|..+...+.+.|++..+++|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999998767889999999999877799999998763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=183.05 Aligned_cols=178 Identities=28% Similarity=0.403 Sum_probs=138.9
Q ss_pred ccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcc--------ccCCccEEEECCeeCCCCChHhhhccEEEEcc--CC
Q 000904 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL--------VEPAGGKILVDGIDISKLGLHDLRSRFGIIPQ--DP 1070 (1232)
Q Consensus 1001 ~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl--------~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQ--dP 1070 (1232)
.+|+|+|++|+|||.++|||.|||||||++++++|. |.|++|.|.+--..+ -+.+|- ||
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----------hhccCccccc
Confidence 589999999999999999999999999999999986 458899988743212 124444 44
Q ss_pred CCCcccHHhccCCCCCCCH-HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 000904 1071 TLFNGTVRYNLDPLSQHTD-QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEA 1149 (1232)
Q Consensus 1071 ~LF~gTIr~NLdp~~~~sd-~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEa 1149 (1232)
.+=+-||-+.+. ....| .--.+.|.++|+.|.+.-.. .-+.||-|||-|..||+++..+|++++.||.
T Consensus 466 ~f~~~tilehl~--s~tGD~~~AveILnraGlsDAvlyRr---------~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 466 EFGEVTILEHLR--SKTGDLNAAVEILNRAGLSDAVLYRR---------KFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred ccCchhHHHHHh--hccCchhHHHHHHHhhccchhhhhhc---------cHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 443446665552 22222 23457899999988765321 1247999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh--cCeEEEEeCCEEEE
Q 000904 1150 TASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD--CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1150 Ts~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~--~DrVlVL~~G~vvE 1200 (1232)
-|+||..|...+.+.|.+.. .+.|++.||||.+.+.. -|+++.+.-|++..
T Consensus 535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~~ 589 (593)
T COG2401 535 AAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPV 589 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccccc
Confidence 99999999999888887754 58999999999999865 59998887776543
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.4e-17 Score=193.41 Aligned_cols=112 Identities=21% Similarity=0.357 Sum_probs=97.7
Q ss_pred CCcc-cccCCCCCCChhHHHHHHHHHHHccCC---CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh
Q 000904 1111 GLDS-LVVEDGSNWSMGQRQLFCLGRALLRRS---RILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1111 gLdt-~v~e~G~nLSgGQRQrl~LARALL~~~---kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~ 1185 (1232)
||.. .+|.....|||||.||+-||.-|.+++ -+.||||||.+|-.+--+.+++.|.+.- +|.|||+|-|.|+.|+
T Consensus 810 GLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk 889 (935)
T COG0178 810 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK 889 (935)
T ss_pred CcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe
Confidence 6666 567888899999999999999999988 8999999999999998888888888743 5889999999999999
Q ss_pred hcCeEEEE------eCCEEEEecChhHHHhhcCCHHHHHHHHH
Q 000904 1186 DCTMVLAI------SDGKLAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1186 ~~DrVlVL------~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~ 1222 (1232)
.||.|+-| +.|+|+..|+|+++.+.++|+=.+..+++
T Consensus 890 ~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yLk~~ 932 (935)
T COG0178 890 TADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKKY 932 (935)
T ss_pred ecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHHHHHHH
Confidence 99999988 46899999999999998777655555543
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-17 Score=207.24 Aligned_cols=200 Identities=26% Similarity=0.274 Sum_probs=164.4
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC---ccEEEECCeeCCCCChHhhhccEEEEccCCCCC-cc
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA---GGKILVDGIDISKLGLHDLRSRFGIIPQDPTLF-NG 1075 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF-~g 1075 (1232)
..+|+|+|.-++|||.+-+.||.|||||||+++|+|-.+-. .|+|.+||.|.++.-. ++.++|++|+-..| .-
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 46899999999999999999999999999999999988642 5799999999988766 78899999988777 55
Q ss_pred cHHhccCCC-------C---CCCHHH-----HHHHHHHcCCcHHHHhhccCCcccccCCC-CCCChhHHHHHHHHHHHcc
Q 000904 1076 TVRYNLDPL-------S---QHTDQE-----IWEVLAKCHLGEAVREKENGLDSLVVEDG-SNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1076 TIr~NLdp~-------~---~~sd~e-----I~~aL~~~~L~~~i~~~p~gLdt~v~e~G-~nLSgGQRQrl~LARALL~ 1139 (1232)
|||+-||.. . +.++.| ...+++..||+ ...||.||++. ...|||||.|+.+|-+++.
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~-------~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~ 277 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLD-------HCADTLVGNDMVRGVSGGERKRVSIGEMLVG 277 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCch-------hhccceecccccccccCcccceeeeeeeeec
Confidence 999998732 1 222333 12344444443 56889998764 5789999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCh--hhhhhcCeEEEEeCCEEEEecChhHHHh
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRI--PTVMDCTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl--~ti~~~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
+++++.+||+|.+||..|.-.+.+.||+.- -+.|+++.=|.. ++..-.|+|++|.+|+++-+|+-++.+.
T Consensus 278 ~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 278 PASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred CcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999999999999999843 367777766664 4555589999999999999999888863
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-17 Score=177.91 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=67.6
Q ss_pred cCCCCCCChhHHHHHHHHHHH----ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--C-cEEEEEecChhhhhh-cC
Q 000904 1117 VEDGSNWSMGQRQLFCLGRAL----LRRSRILVLDEATASIDNATDMILQKTIRAEFA--D-CTVITVAHRIPTVMD-CT 1188 (1232)
Q Consensus 1117 ~e~G~nLSgGQRQrl~LARAL----L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~-~TVI~IAHrl~ti~~-~D 1188 (1232)
..++..||+|||||+.+|+++ +.+|+++++||||++||+.+...+.+.|++..+ + .|+|+|||++..+.+ +|
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~ 200 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE 200 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence 346679999999998877554 589999999999999999999999999987543 3 479999999876654 54
Q ss_pred --eEEEEeCCE
Q 000904 1189 --MVLAISDGK 1197 (1232)
Q Consensus 1189 --rVlVL~~G~ 1197 (1232)
+|++|++|+
T Consensus 201 ~~~v~~l~~g~ 211 (213)
T cd03277 201 KMTVLCVYNGP 211 (213)
T ss_pred ceEEEEEecCc
Confidence 889999886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.2e-17 Score=181.57 Aligned_cols=187 Identities=25% Similarity=0.343 Sum_probs=126.9
Q ss_pred eeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCee-----CCCCC---hHh---
Q 000904 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGID-----ISKLG---LHD--- 1058 (1232)
Q Consensus 990 nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~d-----I~~i~---l~~--- 1058 (1232)
++.-||..+. ..|.++= ..++|+.+||+|+||-||||-++.|.|.+.|.=|+- |+-+ |.... +++
T Consensus 79 e~vHRYg~Ng-FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~ 154 (591)
T COG1245 79 EVVHRYGVNG-FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFK 154 (591)
T ss_pred cceeeccCCc-eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHH
Confidence 3456786554 2343332 357899999999999999999999999999987752 2210 00000 010
Q ss_pred ------hh--ccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCC-cHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1059 ------LR--SRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHL-GEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1059 ------LR--~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L-~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
+| .++.||.-=|-.+.|+|++-|.- .+.-|- ++.++.+ +|+..+..+-++|||||-|
T Consensus 155 ~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~------------~de~g~~devve~l--~L~nvl~r~v~~LSGGELQ 220 (591)
T COG1245 155 KLYEGELRAVHKPQYVDLIPKVVKGKVGELLKK------------VDERGKFDEVVERL--GLENVLDRDVSELSGGELQ 220 (591)
T ss_pred HHHcCCcceecchHHHHHHHHHhcchHHHHHHh------------hhhcCcHHHHHHHh--cchhhhhhhhhhcCchHHH
Confidence 00 11222222334455555543321 111122 2223322 4555555666789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhh-cCeEEEEe
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA-DCTVITVAHRIPTVMD-CTMVLAIS 1194 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~-~~TVI~IAHrl~ti~~-~DrVlVL~ 1194 (1232)
|++||-|++|+.++.++|||||-||....-..-+.||+..+ +++||+|-|||..+.- +|-|-++-
T Consensus 221 r~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 221 RVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 99999999999999999999999999999888999998766 6999999999988765 78777663
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.2e-17 Score=178.77 Aligned_cols=193 Identities=15% Similarity=0.217 Sum_probs=132.8
Q ss_pred EEEeCCcEEEEECCCCCChHHHHHHHhccccCCcc--EEEECCeeCCCCChHhhhccE--EEEccCCCCCcccHHhccCC
Q 000904 1008 CTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGG--KILVDGIDISKLGLHDLRSRF--GIIPQDPTLFNGTVRYNLDP 1083 (1232)
Q Consensus 1008 l~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G--~I~IDG~dI~~i~l~~LR~~i--~iVpQdP~LF~gTIr~NLdp 1083 (1232)
+.+.+||+++|+|++|+|||||++.+.+.++...+ .+.+-.+.-+..+..++.+.+ .+|-.+- +.+-.....
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~- 86 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQ- 86 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHH-
Confidence 47889999999999999999999999999887633 323222222223445544443 0111100 000000000
Q ss_pred CCCCCHHHHHHHHH---HcC-----CcHHHHhhccCCcccccCCCCCCChhH--------HHHHHHHHHHccCCCEEEEe
Q 000904 1084 LSQHTDQEIWEVLA---KCH-----LGEAVREKENGLDSLVVEDGSNWSMGQ--------RQLFCLGRALLRRSRILVLD 1147 (1232)
Q Consensus 1084 ~~~~sd~eI~~aL~---~~~-----L~~~i~~~p~gLdt~v~e~G~nLSgGQ--------RQrl~LARALL~~~kILILD 1147 (1232)
.-..+.+.++ ..| +-|.+.+++.++++.+++.|.++|||| |||+++||+++++++|.+|
T Consensus 87 ----~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 87 ----VAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred ----HHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 0011111112 223 236678889999999999999999999 9999999999999999999
Q ss_pred ccCCCCCHHHHH--HHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHH
Q 000904 1148 EATASIDNATDM--ILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218 (1232)
Q Consensus 1148 EaTs~LD~~T~~--~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l 1218 (1232)
||+.+|..++. .+.+.++. .+.|.|+++||+.+..++|.|.||+.|.+ +++++.+ ++.|+.+
T Consensus 162 -~T~~~d~~~~~~~~i~~~~~~--~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~-~~~~~~~ 225 (249)
T cd01128 162 -ATALVDTGSRMDDVIFEEFKG--TGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLD-PEELQRM 225 (249)
T ss_pred -eeheecCCCcccchHHHHHhc--CCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCC-HHHHHHH
Confidence 99999976554 34333332 46899999999999999999999999997 6777754 4566655
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=165.98 Aligned_cols=135 Identities=21% Similarity=0.276 Sum_probs=99.7
Q ss_pred eEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE-EEccCCCCCcccHHhccCCCC
Q 000904 1007 SCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG-IIPQDPTLFNGTVRYNLDPLS 1085 (1232)
Q Consensus 1007 sl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~-iVpQdP~LF~gTIr~NLdp~~ 1085 (1232)
++.+.++..+.|+|||||||||+++++.-..-..+|.+.... ++ +.+ .+|+...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE------------
Confidence 344455569999999999999999997666555555544310 00 111 122221111
Q ss_pred CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc----CCCEEEEeccCCCCCHHHHHHH
Q 000904 1086 QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR----RSRILVLDEATASIDNATDMIL 1161 (1232)
Q Consensus 1086 ~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~----~~kILILDEaTs~LD~~T~~~I 1161 (1232)
+... .++|+||+||+.|||+|.. +|+++++|||++++|++....+
T Consensus 72 -------------------i~~~------------~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l 120 (162)
T cd03227 72 -------------------IFTR------------LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQAL 120 (162)
T ss_pred -------------------ehhe------------eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 0000 1299999999999999986 7899999999999999999999
Q ss_pred HHHHHHhcC-CcEEEEEecChhhhhhcCeEEEEeC
Q 000904 1162 QKTIRAEFA-DCTVITVAHRIPTVMDCTMVLAISD 1195 (1232)
Q Consensus 1162 q~~L~~~~~-~~TVI~IAHrl~ti~~~DrVlVL~~ 1195 (1232)
.+.+.+... ++|+|++||+.+....+|+++.|+.
T Consensus 121 ~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 121 AEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 998887543 5899999999999999999999864
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-16 Score=209.16 Aligned_cols=214 Identities=19% Similarity=0.253 Sum_probs=147.0
Q ss_pred cceeeeEEEeCCcEEEEECCCCCChHHHHHHHh-c-----c---ccCCccEEEECCeeCCCCC----------hHhhhcc
Q 000904 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALF-R-----L---VEPAGGKILVDGIDISKLG----------LHDLRSR 1062 (1232)
Q Consensus 1002 vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~-r-----l---~ep~~G~I~IDG~dI~~i~----------l~~LR~~ 1062 (1232)
=|||++.+|+-|..++|.|-||||||||++-.+ . + .+.-+--|.||-.+|..-+ .+++|+-
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999997444 1 1 1222344777766664433 2233443
Q ss_pred EEEEcc------CCCCCc--------------ccHHhccCCC------------CCCCHH-----------------HHH
Q 000904 1063 FGIIPQ------DPTLFN--------------GTVRYNLDPL------------SQHTDQ-----------------EIW 1093 (1232)
Q Consensus 1063 i~iVpQ------dP~LF~--------------gTIr~NLdp~------------~~~sd~-----------------eI~ 1093 (1232)
.+=.|+ .|..|+ |.++-++... ..|.+| .|.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 332222 122222 1122111100 011111 134
Q ss_pred HHHHHcCCcHHHHh-----hccCCcc-cccCCCCCCChhHHHHHHHHHHHccC---CCEEEEeccCCCCCHHHHHHHHHH
Q 000904 1094 EVLAKCHLGEAVRE-----KENGLDS-LVVEDGSNWSMGQRQLFCLGRALLRR---SRILVLDEATASIDNATDMILQKT 1164 (1232)
Q Consensus 1094 ~aL~~~~L~~~i~~-----~p~gLdt-~v~e~G~nLSgGQRQrl~LARALL~~---~kILILDEaTs~LD~~T~~~Iq~~ 1164 (1232)
||++-..-.+.+.+ ..-||.. .+|..-..|||||.|||-||.-|.++ +.++||||||.+|+++.-+.+.+.
T Consensus 1665 ea~~~F~~~~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~ 1744 (1809)
T PRK00635 1665 EVAETFPFLKKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQ 1744 (1809)
T ss_pred HHHHHhhccHHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHH
Confidence 44444321111211 1236666 56788889999999999999999876 689999999999999999999998
Q ss_pred HHHh-cCCcEEEEEecChhhhhhcCeEEEEe------CCEEEEecChhHHHhhcCCHH
Q 000904 1165 IRAE-FADCTVITVAHRIPTVMDCTMVLAIS------DGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1165 L~~~-~~~~TVI~IAHrl~ti~~~DrVlVL~------~G~vvE~g~p~~Ll~~~~~~f 1215 (1232)
+++. -++.|||+|.|+++.+..||.|+-|. .|+|+..|+|+++.++++|.=
T Consensus 1745 l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~t 1802 (1809)
T PRK00635 1745 LRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDSLL 1802 (1809)
T ss_pred HHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCcH
Confidence 8774 35899999999999999999999984 589999999999999887753
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-16 Score=170.46 Aligned_cols=152 Identities=15% Similarity=0.149 Sum_probs=112.5
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE-EEccCCCCCcccHH
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG-IIPQDPTLFNGTVR 1078 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~-iVpQdP~LF~gTIr 1078 (1232)
..+.+|+++++++|+.++|.|+||+||||+++.+.- -.+..++| +||.+...+.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~---- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP---- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe----
Confidence 468999999999999999999999999999999871 12334555 7777753211
Q ss_pred hccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH--ccCCCEEEEecc---CCCC
Q 000904 1079 YNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL--LRRSRILVLDEA---TASI 1153 (1232)
Q Consensus 1079 ~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL--L~~~kILILDEa---Ts~L 1153 (1232)
++ .+++++.++.+.. ..++|.|++|+..+++++ +.+|++++|||| |+++
T Consensus 72 ----~~--------~~il~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~l 125 (222)
T cd03285 72 ----IV--------DCILARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTY 125 (222)
T ss_pred ----cc--------ceeEeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChH
Confidence 11 1223334443321 136899999999999999 899999999999 9999
Q ss_pred CHHHHHH-HHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 000904 1154 DNATDMI-LQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1154 D~~T~~~-Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~ 1203 (1232)
|...... +.+.+.+ ..++|+|++||..+...-||++..+++|++...++
T Consensus 126 D~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 126 DGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 9876543 3255543 24799999999755544599999999999976554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-12 Score=156.58 Aligned_cols=309 Identities=19% Similarity=0.255 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhccCChh------hHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHH
Q 000904 371 WYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGG------EIMNYVTVDAYRIGEFPFWFHQ-IWTTSVQLCIALI 443 (1232)
Q Consensus 371 ~~~~~~~~~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G------~i~nlms~D~~ri~~~~~~~~~-~w~~plqi~~~~~ 443 (1232)
..|..+++.++.|..|.....+|=|.-...-+-. ..| ..=..++.|+..+.+....+.. +-...++++--..
T Consensus 106 ~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~-~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~ 184 (604)
T COG4178 106 QTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA-QAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTG 184 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH-hcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999988766433211 122 2235788888777665443332 2233344444455
Q ss_pred HHHHHHHHHH---------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhHHHHHhch
Q 000904 444 ILFHAVGLAT---------IAAL--VVIMITVLCNAPLAKLQHKFQTKLMVA-----QDERLKACSEALVNMKVLKLYAW 507 (1232)
Q Consensus 444 ~L~~~lG~~~---------l~gl--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~R~~~~~E~L~~ir~iK~~~w 507 (1232)
+||...|..+ +.|. .++++.++....++-+.++--.++... -|=|-. ...+.++--.|-+|..
T Consensus 185 iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~-Lvrv~enaE~IAly~G 263 (604)
T COG4178 185 ILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYS-LVRVRENAEAIALYRG 263 (604)
T ss_pred HHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH-HHHHHhhHHHHHHhcC
Confidence 6775544221 1111 122233344444443333322222222 233333 3356778888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhH---hhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHH
Q 000904 508 ETHFKNAIEILRNVEYKWLSAVQLRK----AYNTFLFWS---SPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDP 580 (1232)
Q Consensus 508 E~~f~~~i~~~R~~E~~~l~k~~~~~----~~~~~~~~~---~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~p 580 (1232)
|+.-.+++.+.=..=++..++..... .+.....++ .|.++. +=.+..++++-+.+-++-..|+.+...
T Consensus 264 E~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~-----ap~~f~g~i~~G~lmqa~~aF~~v~ss 338 (604)
T COG4178 264 EKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIA-----APRYFSGQITFGGLMQAVGAFGQVHSS 338 (604)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhc-----cHhhhcCcChHHHHHHHHHHHHHHHHH
Confidence 99887776653333222222221111 111112222 222221 112567889999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhCCCC---CCc---chh-cccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEe
Q 000904 581 IRVIPDVIGVFIQANVAFSRIVNFLEAPE---LQS---MNI-RQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEV 653 (1232)
Q Consensus 581 l~~lp~~i~~~~~a~vs~~Ri~~fL~~~e---~~~---~~~-~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i 653 (1232)
++.+-.....+++-+.++.|+.+|-++=| .++ ... .+....++.+..|+++|++..-|+. ++.+++.|++|
T Consensus 339 lswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v 416 (604)
T COG4178 339 LSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEV 416 (604)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--Ceeeccceeee
Confidence 99999999999999999999999974311 111 100 0000000025789999999998754 48999999999
Q ss_pred cCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 654 RPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 654 ~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
++||.+.|.|+||||||||+++|.|.-|--+|++.
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~ 451 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWPWGSGRIS 451 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCccCCCcee
Confidence 99999999999999999999999999999999874
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-15 Score=170.16 Aligned_cols=188 Identities=22% Similarity=0.302 Sum_probs=114.0
Q ss_pred ceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----------------------------------------Cc
Q 000904 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----------------------------------------AG 1041 (1232)
Q Consensus 1003 L~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----------------------------------------~~ 1041 (1232)
+++.++++.+| ...|+|+|||||||++.+|.=+... .+
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 34556777776 5789999999999999886433211 01
Q ss_pred cEEEECCeeCCCCChHhh---hccEEEEccCCCCCcccHHhc---cCCCCCCCHHH---HHHHHHHcCCcHHHHh---hc
Q 000904 1042 GKILVDGIDISKLGLHDL---RSRFGIIPQDPTLFNGTVRYN---LDPLSQHTDQE---IWEVLAKCHLGEAVRE---KE 1109 (1232)
Q Consensus 1042 G~I~IDG~dI~~i~l~~L---R~~i~iVpQdP~LF~gTIr~N---Ldp~~~~sd~e---I~~aL~~~~L~~~i~~---~p 1109 (1232)
.++.+||..++. +.++ -..+.+-|++..|+.++-.+. +|-+....+.+ .++..+++ ...... -|
T Consensus 91 ~~~~ing~~~~~--l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~g~ 166 (270)
T cd03242 91 RKARLNGIKVRR--LSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKA--LRQRNALLKGP 166 (270)
T ss_pred eEEEECCeeccC--HHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HHHHHHHhCCC
Confidence 134566665544 3333 334666677777775533222 22211111111 12212111 000011 12
Q ss_pred cCCcccccCC----CCCCChhHHHHHHHHHHHc---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 000904 1110 NGLDSLVVED----GSNWSMGQRQLFCLGRALL---------RRSRILVLDEATASIDNATDMILQKTIRAEFADCTVIT 1176 (1232)
Q Consensus 1110 ~gLdt~v~e~----G~nLSgGQRQrl~LARALL---------~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~ 1176 (1232)
..-|..+.-+ -..+|+||||+++|||+|+ ++|++++|||||++||+...+.+.+.+++. . .+++
T Consensus 167 ~~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~--~-q~ii 243 (270)
T cd03242 167 HRDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR--V-QTFV 243 (270)
T ss_pred ChhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC--C-CEEE
Confidence 2211111111 2347999999999999984 799999999999999999999999999763 2 4555
Q ss_pred EecChhhhhh-c---CeEEEEeCCEE
Q 000904 1177 VAHRIPTVMD-C---TMVLAISDGKL 1198 (1232)
Q Consensus 1177 IAHrl~ti~~-~---DrVlVL~~G~v 1198 (1232)
++|+.+.+.+ | ++|+.+++|++
T Consensus 244 ~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 244 TTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred EeCCchhccchhccCccEEEEeCcEE
Confidence 5555555544 4 68999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-15 Score=165.03 Aligned_cols=153 Identities=12% Similarity=0.100 Sum_probs=102.5
Q ss_pred eeEEEeCCcEEEEECCCCCChHHHHHHHhcc-ccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCC
Q 000904 1006 ISCTFEGGHKIGIVGRTGSGKTTLIGALFRL-VEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPL 1084 (1232)
Q Consensus 1006 vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl-~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~ 1084 (1232)
.++++.+|++++|+|+|||||||+++++.+. +.+..|...-. -+.++++..|....|..
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-----------~~~~i~~~dqi~~~~~~--------- 81 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-----------ESASIPLVDRIFTRIGA--------- 81 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-----------cccccCCcCEEEEEecC---------
Confidence 4566779999999999999999999999843 22222321110 01233333222211110
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHH-H
Q 000904 1085 SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQ-K 1163 (1232)
Q Consensus 1085 ~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq-~ 1163 (1232)
+..+.++-+.++.++|| +..+.+++.+|++++|||||+++|+.....+. .
T Consensus 82 ----------------------------~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ 132 (202)
T cd03243 82 ----------------------------EDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYA 132 (202)
T ss_pred ----------------------------cccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHH
Confidence 00111222456777776 55556778899999999999999998665543 3
Q ss_pred HHHHhc-CCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHH
Q 000904 1164 TIRAEF-ADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1164 ~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
.++... .++|+|++||+.+.+..+|++..+++|++.+.+++.++
T Consensus 133 ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 133 VLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 344321 47899999999999999999999999999988876554
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-12 Score=150.49 Aligned_cols=319 Identities=18% Similarity=0.184 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhccCChhhHH---HHHHHHHHHHhHHH-HHHHHHHHHHHHHHH
Q 000904 365 SLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIM---NYVTVDAYRIGEFP-FWFHQIWTTSVQLCI 440 (1232)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~---nlms~D~~ri~~~~-~~~~~~w~~plqi~~ 440 (1232)
++...-..|...-+..|.|.-+..-+|++=++-..--+-++..+.|. .+++.|++|+.... .....+-.+|+-++.
T Consensus 136 s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~ 215 (659)
T KOG0060|consen 136 SLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVY 215 (659)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeeh
Confidence 44445577888889999999999999998876432221111222233 47888999886643 344556678888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHH
Q 000904 441 ALIILFHAVGLATIAALVVIM-ITVLCNA----PLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAI 515 (1232)
Q Consensus 441 ~~~~L~~~lG~~~l~gl~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i 515 (1232)
-.+.+|...||...+.+..-+ +-..+|. ++++++.+-|+..- |=|-+- +++..|-..|-+|+.+..-...+
T Consensus 216 Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEG---dfRy~h-~rlr~NaE~iAFY~g~~~E~~~~ 291 (659)
T KOG0060|consen 216 YTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEG---DFRYKH-SRLRVNAEEIAFYRGGQVEHQRT 291 (659)
T ss_pred hhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhc---chhhhe-eeeeecchhhhhhccCchHHHHH
Confidence 999999998885544433222 2333333 44455444444333 333332 24555667788899888766665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH---HHhC---CCcChhhHHHHHH----HHHHHHHHHHHhH
Q 000904 516 EILRNVEYKWLSAVQLRKAYNTFLFWSSPVLVSTATFGAC---YFLN---VPLYASNVFTFVA----TLRLVQDPIRVIP 585 (1232)
Q Consensus 516 ~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~~v~~~tf~~~---~~~~---~~Lt~~~vFt~la----lf~~l~~pl~~lp 585 (1232)
...=+.=++.+++.....-...++-...--+..++.+.+. ++.| +.+++++.++-++ .|.-|...+..+.
T Consensus 292 ~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~ 371 (659)
T KOG0060|consen 292 DQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLV 371 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5544444444444433322222221111122222222111 1223 3467777665542 2223333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCC-------------cchhc---ccC---CCCCCcceEEEEeeEEEecCCCCCCc
Q 000904 586 DVIGVFIQANVAFSRIVNFLEA-PELQ-------------SMNIR---QKG---NIENVNHVISIKSASFSWEESSSKPT 645 (1232)
Q Consensus 586 ~~i~~~~~a~vs~~Ri~~fL~~-~e~~-------------~~~~~---~~~---~~~~~~~~I~i~~~sfsw~~~~~~~~ 645 (1232)
..-..+.+-..=..||.++.+. +++. ..... ..| ...+.+.+|++++++++-|++ ...+
T Consensus 372 ~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~-g~~l 450 (659)
T KOG0060|consen 372 DLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN-GDLL 450 (659)
T ss_pred HHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-Ccee
Confidence 4444455555556677776531 1111 00000 011 111256899999999998875 3356
Q ss_pred eeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 646 L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.+|+||+|+.|+-+.|+||+|||||||++.+.|.-|..+|++.
T Consensus 451 ie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~ 493 (659)
T KOG0060|consen 451 IENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLT 493 (659)
T ss_pred eeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEE
Confidence 7789999999999999999999999999999999998888873
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-14 Score=154.02 Aligned_cols=135 Identities=16% Similarity=0.101 Sum_probs=91.2
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCC-cccHH
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLF-NGTVR 1078 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF-~gTIr 1078 (1232)
+.|++|++++ +|+.++|+||||||||||++++.+... +..+|.++... .+++|+..+| .-|++
T Consensus 14 ~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 3577887665 579999999999999999999977553 22356555321 2566744444 55889
Q ss_pred hccCCCCCCCH---HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCH
Q 000904 1079 YNLDPLSQHTD---QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDN 1155 (1232)
Q Consensus 1079 ~NLdp~~~~sd---~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~ 1155 (1232)
+|+........ +++.++|+.++ +++|+++++||||+++|+
T Consensus 78 d~l~~~~s~~~~e~~~~~~iL~~~~-------------------------------------~~~p~llllDEp~~glD~ 120 (199)
T cd03283 78 DDLRDGISYFYAELRRLKEIVEKAK-------------------------------------KGEPVLFLLDEIFKGTNS 120 (199)
T ss_pred hccccccChHHHHHHHHHHHHHhcc-------------------------------------CCCCeEEEEecccCCCCH
Confidence 88853221112 22333333322 179999999999999999
Q ss_pred HHHHHHH-HHHHHh-cCCcEEEEEecChhhhhhc
Q 000904 1156 ATDMILQ-KTIRAE-FADCTVITVAHRIPTVMDC 1187 (1232)
Q Consensus 1156 ~T~~~Iq-~~L~~~-~~~~TVI~IAHrl~ti~~~ 1187 (1232)
.+...+. ..+++. .++.|+|++||+++.+...
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 8776554 345442 2478999999999887653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-14 Score=182.88 Aligned_cols=102 Identities=24% Similarity=0.307 Sum_probs=89.6
Q ss_pred CCccc-ccCCCCCCChhHHHHHHHHHHHccCC--CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh
Q 000904 1111 GLDSL-VVEDGSNWSMGQRQLFCLGRALLRRS--RILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1111 gLdt~-v~e~G~nLSgGQRQrl~LARALL~~~--kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~ 1186 (1232)
||+.. .+.....|||||+||+.|||||..+| +++||||||++||++..+.+.+.|++.. ++.|||+|+||++.+..
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 45443 45567799999999999999999986 8999999999999999999999998753 47899999999999999
Q ss_pred cCeEEEE------eCCEEEEecChhHHHhhcC
Q 000904 1187 CTMVLAI------SDGKLAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1187 ~DrVlVL------~~G~vvE~g~p~~Ll~~~~ 1212 (1232)
||+|++| ++|+|++.|+|+++...++
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~~~ 586 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILANPD 586 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhcCch
Confidence 9999999 8999999999999875433
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-14 Score=157.12 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=104.4
Q ss_pred cEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC-hHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHH
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG-LHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEI 1092 (1232)
Q Consensus 1014 ekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI 1092 (1232)
..++|+|+||||||||+++|.|++.|.+|+|.+||.++..++ .++++..++++||+..--.-++.+|.. ..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~------k~-- 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP------KA-- 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccch------HH--
Confidence 678999999999999999999999999999999999998775 678888889999976322223332210 00
Q ss_pred HHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCc
Q 000904 1093 WEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADC 1172 (1232)
Q Consensus 1093 ~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~ 1172 (1232)
.| ...++|+ .+|+++++|||++. +.+...++....+.
T Consensus 184 --------------------------------~~---~~~~i~~--~~P~villDE~~~~------e~~~~l~~~~~~G~ 220 (270)
T TIGR02858 184 --------------------------------EG---MMMLIRS--MSPDVIVVDEIGRE------EDVEALLEALHAGV 220 (270)
T ss_pred --------------------------------HH---HHHHHHh--CCCCEEEEeCCCcH------HHHHHHHHHHhCCC
Confidence 01 2445555 49999999999842 33444444333689
Q ss_pred EEEEEecChhh--h------------hhcCeEEEEeCCEEEEecChhHHH
Q 000904 1173 TVITVAHRIPT--V------------MDCTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1173 TVI~IAHrl~t--i------------~~~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|+|+++|+.+. + .-+||+++|++|+ ..|++++++
T Consensus 221 ~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 221 SIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred EEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 99999997655 3 1279999999887 777777665
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-14 Score=167.60 Aligned_cols=119 Identities=19% Similarity=0.246 Sum_probs=96.8
Q ss_pred CCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCCcceEEEEeeEEEec
Q 000904 559 NVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWE 638 (1232)
Q Consensus 559 ~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~I~i~~~sfsw~ 638 (1232)
.++++|+++|+++++|+.++.|+..+|..... .+|+..|+..+|.+...+.... +..+.|+++|++++|+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~nls~~y~ 91 (329)
T PRK14257 22 LNELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKEDF---NHANVFEIRNFNFWYM 91 (329)
T ss_pred cchhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccCCC---CcCceEEEEeeEEEec
Confidence 35789999999999999999999988865443 5699999988775542221111 1456899999999996
Q ss_pred CCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCC-----Ccccccc
Q 000904 639 ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIL 688 (1232)
Q Consensus 639 ~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~-----~~~G~v~ 688 (1232)
.. .+++|+|+||+|++||+++|+|++|||||||+++|+|+++ |.+|.|.
T Consensus 92 ~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~ 145 (329)
T PRK14257 92 NR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY 145 (329)
T ss_pred CC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE
Confidence 42 3579999999999999999999999999999999999997 4578763
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-14 Score=183.37 Aligned_cols=101 Identities=24% Similarity=0.316 Sum_probs=89.5
Q ss_pred CCccc-ccCCCCCCChhHHHHHHHHHHHccCC--CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh
Q 000904 1111 GLDSL-VVEDGSNWSMGQRQLFCLGRALLRRS--RILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1111 gLdt~-v~e~G~nLSgGQRQrl~LARALL~~~--kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~ 1186 (1232)
||+.. ......+||||||||+.|||||..+| +++||||||++||++..+.+.+.|++.. .+.|||+|+||++.+..
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 45433 45566789999999999999999987 9999999999999999999999998753 47899999999999989
Q ss_pred cCeEEEE------eCCEEEEecChhHHHhhc
Q 000904 1187 CTMVLAI------SDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1187 ~DrVlVL------~~G~vvE~g~p~~Ll~~~ 1211 (1232)
||+|++| ++|+|+..|+++++++.+
T Consensus 557 aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~~ 587 (943)
T PRK00349 557 ADYIVDIGPGAGVHGGEVVASGTPEEIMKNP 587 (943)
T ss_pred CCEEEEeccccCCCCCEEeeccCHHHHhcCh
Confidence 9999999 999999999999997653
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-14 Score=137.75 Aligned_cols=75 Identities=24% Similarity=0.201 Sum_probs=70.7
Q ss_pred ccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhc
Q 000904 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYN 1080 (1232)
Q Consensus 1001 ~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~N 1080 (1232)
++|++++|++++||.++|+|+||||||||++++. +|++.++|.|+..++.++.++.++++||+ +|.+|||+|
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999986 89999999999999999999999999999 999999999
Q ss_pred cCC
Q 000904 1081 LDP 1083 (1232)
Q Consensus 1081 Ldp 1083 (1232)
|..
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 963
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.6e-12 Score=140.08 Aligned_cols=219 Identities=21% Similarity=0.286 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 000904 718 STLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNL 797 (1232)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l 797 (1232)
...+.....+.....+.+...+++.++++++++.|.++|+++++|++++|+++|.+.++......+...+......+..+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~ 133 (275)
T PF00664_consen 54 IFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSL 133 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhh
Confidence 33344444444567788899999999999999999999999999999999999999999988888888888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhc
Q 000904 798 GVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTN 877 (1232)
Q Consensus 798 ~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~ 877 (1232)
+++...+|.+.++.+....+.......+.+..++..+......+...+++.|.++|+++||+|+.|+++.++..+..++.
T Consensus 134 ~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~ 213 (275)
T PF00664_consen 134 ILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKY 213 (275)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999998887777777777777777777777777777788899999999999999999999999999999888887
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-cCCCCcchHHHHHHHHHHHHHHHH
Q 000904 878 ASPFFQTFAANEWLIQRLETLSATVISSAA-FCMVL-LPPGTFTPGFIGMALSYGLSLNSS 936 (1232)
Q Consensus 878 ~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~-~~~~~-~~~g~~~~g~~gl~l~~~~~l~~~ 936 (1232)
.+........+.+.....+.+......... ..... ...|.+++|.+...+.|...+..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 214 RKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 777666666666666666665555333322 23344 568889999988888887766554
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-14 Score=157.44 Aligned_cols=206 Identities=24% Similarity=0.336 Sum_probs=126.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcc--ccCCccEEEECCeeCCCCC-------
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL--VEPAGGKILVDGIDISKLG------- 1055 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl--~ep~~G~I~IDG~dI~~i~------- 1055 (1232)
.|.++|.+.+- .....+.|-|+.|-.|.+.|+|||||-|||||++.+.-- --|..=.+++..+.+-.-+
T Consensus 264 DIKiEnF~ISA--~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv 341 (807)
T KOG0066|consen 264 DIKIENFDISA--QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV 341 (807)
T ss_pred cceeeeeeeec--ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence 47788877764 345678899999999999999999999999999988531 1122222222222211000
Q ss_pred hHhhhccEEEEccCCC----CCcc--cHHhccCCCCCCCHHHHHHHHHHcCCcHHHH---hh--ccCCcccccCCC-CCC
Q 000904 1056 LHDLRSRFGIIPQDPT----LFNG--TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVR---EK--ENGLDSLVVEDG-SNW 1123 (1232)
Q Consensus 1056 l~~LR~~i~iVpQdP~----LF~g--TIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~---~~--p~gLdt~v~e~G-~nL 1123 (1232)
++.=.+|+.++-.+.- +-.| |..+.+ +++.+-|+..|....-. +. -.|++-.+.+.+ ..+
T Consensus 342 l~aD~kRl~lLeee~~L~~q~e~Gd~taaErl--------~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kF 413 (807)
T KOG0066|consen 342 LKADKKRLALLEEEAKLMSQIEEGDTTAAERL--------KEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKF 413 (807)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCchHHHHHH--------HHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCcccc
Confidence 0000001111100000 0000 111110 12222233333221100 00 124455554444 469
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1124 SMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1124 SgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
|||=|-|++|||||...|-+|.|||||++||...---+-..|+.. .+|.++|+||-.++.+ |..|+.||+-++-.|-
T Consensus 414 SGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYr 491 (807)
T KOG0066|consen 414 SGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYR 491 (807)
T ss_pred CCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhc
Confidence 999999999999999999999999999999987655555666654 4699999999999988 9999999988876543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-13 Score=149.37 Aligned_cols=59 Identities=32% Similarity=0.619 Sum_probs=55.6
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.++++|++|+|+ ++++|+|+||+|++||+++|+|||||||||||++|+|.++|.+|+|.
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~ 60 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 578999999997 36899999999999999999999999999999999999999999983
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.8e-13 Score=143.12 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=93.3
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE-EccCCCCCcccHH
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI-IPQDPTLFNGTVR 1078 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i-VpQdP~LF~gTIr 1078 (1232)
..+.+|+++++++|+.++|.||||+||||+++.+.++. +..++|. ||-+. .+-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 46899999999999999999999999999999998774 2333432 22211 111333
Q ss_pred hccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHH
Q 000904 1079 YNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158 (1232)
Q Consensus 1079 ~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~ 1158 (1232)
+||- ... +.+..+.++.+.+|.|+||+ ..+-+++.+|++++||||++++|+...
T Consensus 73 d~I~--------------~~~-----------~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 73 NRLL--------------SRL-----------SNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred hhee--------------Eec-----------CCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHH
Confidence 3331 111 11112233446899999976 455557889999999999999998654
Q ss_pred HHH-HHHHHHh-cCCcEEEEEecChhhhhh
Q 000904 1159 MIL-QKTIRAE-FADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1159 ~~I-q~~L~~~-~~~~TVI~IAHrl~ti~~ 1186 (1232)
..+ ...++.. ..++|+|++||+.+.+..
T Consensus 127 ~~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 127 FAISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 333 2333321 138899999999988765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-13 Score=146.58 Aligned_cols=151 Identities=14% Similarity=0.153 Sum_probs=100.1
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcc-cHH
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNG-TVR 1078 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~g-TIr 1078 (1232)
+.|.++++++.++ +.++|+|+|||||||+++++.++.-.. . .|.. ++-+ +.++++++|- |.. +++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~---~g~~---vp~~--~~~i~~~~~i---~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--Q---IGSF---VPAS--KAEIGVVDRI---FTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--c---cCCe---eccc--cceecceeeE---eccCCch
Confidence 3588899999877 999999999999999999997644221 0 1111 1111 2345555442 210 111
Q ss_pred hccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH----HHHHHHH--ccCCCEEEEecc---
Q 000904 1079 YNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL----FCLGRAL--LRRSRILVLDEA--- 1149 (1232)
Q Consensus 1079 ~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr----l~LARAL--L~~~kILILDEa--- 1149 (1232)
.++|.||.+. ..+++++ +.+|++++||||
T Consensus 84 ------------------------------------------~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~g 121 (216)
T cd03284 84 ------------------------------------------DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRG 121 (216)
T ss_pred ------------------------------------------hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 2345554443 3466665 469999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHH
Q 000904 1150 TASIDNATD-MILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1150 Ts~LD~~T~-~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
|+++|.... ..+.+.+.+. .++|+|++||+.+...-+|++--+++|++...++++++
T Consensus 122 t~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 122 TSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred CChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 999997652 4445555442 37899999999877666887777788888777666665
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=147.03 Aligned_cols=195 Identities=23% Similarity=0.297 Sum_probs=140.1
Q ss_pred eEecCCCCccceeeeEEEeCCc-----EEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEc
Q 000904 993 IRYRPDSPLVLKGISCTFEGGH-----KIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIP 1067 (1232)
Q Consensus 993 ~~Y~~~~~~vL~~vsl~I~~Ge-----kvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVp 1067 (1232)
++|+ +...-+-+..+.|+.|| .+-..|.||-||||+++.|+|..+|++|. ++..+ .++|=|
T Consensus 343 y~Yp-~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSykp 408 (592)
T KOG0063|consen 343 YSYP-KMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYKP 408 (592)
T ss_pred eccC-cceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceeccc
Confidence 4453 34456778888899884 67888999999999999999999998762 22222 577888
Q ss_pred cCCC-CCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000904 1068 QDPT-LFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVL 1146 (1232)
Q Consensus 1068 QdP~-LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILIL 1146 (1232)
|.-. =|+||||.-+. +.||.+-..-++...+. .|-..+..++..-.+|||||.||++||-+|=+.+++.+.
T Consensus 409 qkispK~~~tvR~ll~-------~kIr~ay~~pqF~~dvm-kpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYli 480 (592)
T KOG0063|consen 409 QKISPKREGTVRQLLH-------TKIRDAYMHPQFVNDVM-KPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLI 480 (592)
T ss_pred cccCccccchHHHHHH-------HHhHhhhcCHHHHHhhh-hhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEe
Confidence 8543 68899996542 34444433333322222 233444455555678999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecChhhhhh-cCeEEEEeC--CEEEEecChhHHHh
Q 000904 1147 DEATASIDNATDMILQKTIRAE--FADCTVITVAHRIPTVMD-CTMVLAISD--GKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1147 DEaTs~LD~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~-~DrVlVL~~--G~vvE~g~p~~Ll~ 1209 (1232)
|||.+-||.+.....-+.+++- ...+|-.+|-||.-...- +|||+|.+. +...-.-.|+.|+.
T Consensus 481 DEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~ 548 (592)
T KOG0063|consen 481 DEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLA 548 (592)
T ss_pred cCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHH
Confidence 9999999999887777777763 257899999999654433 899999874 23333445666664
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-13 Score=146.98 Aligned_cols=179 Identities=23% Similarity=0.243 Sum_probs=106.0
Q ss_pred ceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccccc----------cccc
Q 000904 626 HVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNS----------WLAA 695 (1232)
Q Consensus 626 ~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~~~----------~l~~ 695 (1232)
..|+++|++|+|+.+ ++|+||||+|++|++++|+||||||||||+++|+|.++|.+|+|.-.. .+++
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 479999999999742 699999999999999999999999999999999999999999984211 1222
Q ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHh
Q 000904 696 NVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIV 775 (1232)
Q Consensus 696 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~v 775 (1232)
..+...++..+-+.++=.+..+ +..-.-.+....+.+ ++...+.+-+..|.-|...+.|++
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g-------~~~~~g~~~~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~L----------- 140 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLG-------RYGKKGWFRRLNKKD-KEKVDEALERVGMEDLRDRQIGEL----------- 140 (254)
T ss_pred cCcccccCCCCCcCHHHHHHcc-------CcccccccccccHHH-HHHHHHHHHHcCchhhhCCccccc-----------
Confidence 2221112111111111000000 000000000001111 333444444444444433333221
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000904 776 DLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTT 839 (1232)
Q Consensus 776 d~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~ 839 (1232)
++.-..-..++-++...|.+++++.|+.-++...+..+.+..+++++. +.+
T Consensus 141 ------------SGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~t 191 (254)
T COG1121 141 ------------SGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKT 191 (254)
T ss_pred ------------CcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCE
Confidence 111111123444556678888999999999999998888888888776 443
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=175.43 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=109.3
Q ss_pred CCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH------HHHHHHHHccCCCEEE
Q 000904 1072 LFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ------LFCLGRALLRRSRILV 1145 (1232)
Q Consensus 1072 LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ------rl~LARALL~~~kILI 1145 (1232)
.|+||+++||..-.+.+++ +++++.++..+++..+|.| |+.++..| .||+|||| |++||||++.+|+||+
T Consensus 1153 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~ 1228 (1311)
T TIGR00606 1153 TYRGQDIEYIEIRSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIA 1228 (1311)
T ss_pred HcCccHHHHhhcCCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEE
Confidence 4899999999873344554 7899999999999999999 99998776 89999999 9999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhc------CCcEEEEEecChhhhhh------cCeEEEEeC---C-EEEEecChhHHHh
Q 000904 1146 LDEATASIDNATDMILQKTIRAEF------ADCTVITVAHRIPTVMD------CTMVLAISD---G-KLAEYDEPMKLMK 1209 (1232)
Q Consensus 1146 LDEaTs~LD~~T~~~Iq~~L~~~~------~~~TVI~IAHrl~ti~~------~DrVlVL~~---G-~vvE~g~p~~Ll~ 1209 (1232)
|||||++||..+...+.+.|.+.. .+.|||+|||+++++.. +|+.+-+.. | -+++.-+|+.++.
T Consensus 1229 lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1308 (1311)
T TIGR00606 1229 LDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLKKNEDQCSEIVKCSPSSLGK 1308 (1311)
T ss_pred eeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeeeeccccCceeEeeCCccccc
Confidence 999999999999998888886642 36799999999998864 466665532 2 2445456666554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.5e-12 Score=139.13 Aligned_cols=171 Identities=20% Similarity=0.232 Sum_probs=102.4
Q ss_pred eeeEEEeCCcEEEEECCCCCChHHHHHHH-hcccc-CC-ccEEEECCeeCCC--CChHhhhccEEEEccCCCCC----cc
Q 000904 1005 GISCTFEGGHKIGIVGRTGSGKTTLIGAL-FRLVE-PA-GGKILVDGIDISK--LGLHDLRSRFGIIPQDPTLF----NG 1075 (1232)
Q Consensus 1005 ~vsl~I~~GekvgIVGrtGSGKSTLl~~L-~rl~e-p~-~G~I~IDG~dI~~--i~l~~LR~~i~iVpQdP~LF----~g 1075 (1232)
..++.+.+ ....|+|+|||||||++-+| +-+-. +. +.+..-...-|.. -........+....+++.-. ..
T Consensus 17 ~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~~ 95 (220)
T PF02463_consen 17 NAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDKK 95 (220)
T ss_dssp EEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSSS
T ss_pred eEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44455544 48999999999999999999 54442 11 1110000000000 01112233455554444211 11
Q ss_pred --cHHhccCCCC---------CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH----ccC
Q 000904 1076 --TVRYNLDPLS---------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL----LRR 1140 (1232)
Q Consensus 1076 --TIr~NLdp~~---------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL----L~~ 1140 (1232)
.|+..++..+ ..+.+++.+.++...+... .+|||||-+++||=.+ ..+
T Consensus 96 ~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~-----------------~lSgGEk~~~~Lal~lA~~~~~~ 158 (220)
T PF02463_consen 96 EIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE-----------------FLSGGEKSLVALALLLALQRYKP 158 (220)
T ss_dssp EEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT-----------------GS-HHHHHHHHHHHHHHHHTCS-
T ss_pred cccccccccccccccccccccccccccccccccccccccc-----------------ccccccccccccccccccccccc
Confidence 1221222111 2345667666665544321 7999999999998554 357
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEE
Q 000904 1141 SRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAI 1193 (1232)
Q Consensus 1141 ~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL 1193 (1232)
++++||||+.++||......+.+.|++..+++-+|++||+..+...+|+.+.+
T Consensus 159 ~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 159 SPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp -SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999988788999999999999999987765
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.5e-12 Score=146.59 Aligned_cols=76 Identities=21% Similarity=0.375 Sum_probs=65.8
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh---cC
Q 000904 1121 SNWSMGQRQLFCLGRALL---------RRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD---CT 1188 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL---------~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~---~D 1188 (1232)
..+|.||+|+++||+++. ++|+||+||||+++||+...+.+.+.|.+. ++++++.+|+.+.+.+ .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 468999999999999885 799999999999999999999998888642 5688999998876654 45
Q ss_pred eEEEEeCCEE
Q 000904 1189 MVLAISDGKL 1198 (1232)
Q Consensus 1189 rVlVL~~G~v 1198 (1232)
+++.|++|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.9e-12 Score=132.52 Aligned_cols=63 Identities=38% Similarity=0.596 Sum_probs=58.0
Q ss_pred ceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccccc
Q 000904 626 HVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690 (1232)
Q Consensus 626 ~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~~ 690 (1232)
..|+++|++.+||. .+.+|+||||+|++||+|+|+|+|||||||||++|.|..++.+|++..+
T Consensus 2 ~~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~ 64 (258)
T COG3638 2 MMIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFN 64 (258)
T ss_pred ceEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEec
Confidence 46999999999984 4689999999999999999999999999999999999999999988543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-12 Score=138.73 Aligned_cols=59 Identities=39% Similarity=0.533 Sum_probs=55.6
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.+++++++.+|+. ..+|+||||+|++||+|+|+|||||||||||++|.|...|++|+|.
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~ 61 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 5899999999975 5899999999999999999999999999999999999999999873
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-12 Score=146.19 Aligned_cols=206 Identities=24% Similarity=0.290 Sum_probs=123.0
Q ss_pred cceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccccccccccccc--CCCc
Q 000904 625 NHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVE--NPNV 702 (1232)
Q Consensus 625 ~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~~~~l~~~~~--~~~~ 702 (1232)
...++++|++.+|+ +.++++|+||+|++||++++.|||||||||+|++|.|+..|++|+|.-+.--....+ ..++
T Consensus 3 ~~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~i 79 (352)
T COG3842 3 KPALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPI 79 (352)
T ss_pred CceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccc
Confidence 35799999999997 358999999999999999999999999999999999999999998843321100000 0010
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhh-hhh
Q 000904 703 STLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLD-VPF 781 (1232)
Q Consensus 703 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~-~~~ 781 (1232)
...+ --|+ +|=-+.....+.+|++..+ ..+..++-.|+..-++.+... ...
T Consensus 80 g~VF--Q~YA-------LFPHltV~~NVafGLk~~~-------------------~~~~~~i~~rv~e~L~lV~L~~~~~ 131 (352)
T COG3842 80 GMVF--QSYA-------LFPHMTVEENVAFGLKVRK-------------------KLKKAEIKARVEEALELVGLEGFAD 131 (352)
T ss_pred ceee--cCcc-------cCCCCcHHHHhhhhhhhcC-------------------CCCHHHHHHHHHHHHHHcCchhhhh
Confidence 0000 0000 0000111111223333110 111223334444433333321 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcc
Q 000904 782 SLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFE 861 (1232)
Q Consensus 782 ~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~ 861 (1232)
....-+++.-+.-..++-.....|.+++++.|+..++..+........+++.+..+.+--.+.+.-.|++.-...|-.++
T Consensus 132 R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~ 211 (352)
T COG3842 132 RKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMN 211 (352)
T ss_pred hChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEcc
Confidence 11111233334445566667788999999999999999998888777777777766665556666666665554444443
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-12 Score=132.87 Aligned_cols=60 Identities=42% Similarity=0.558 Sum_probs=56.0
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
.|+++|++.+|+. ..+|+|||++|++||.++|||||||||||||++|+|+.++++|.|.-
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i 61 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEE
Confidence 5899999999973 57999999999999999999999999999999999999999998843
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-12 Score=136.77 Aligned_cols=203 Identities=20% Similarity=0.263 Sum_probs=119.2
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccccccccccccCCCcchhH
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVENPNVSTLR 706 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~~~~l~~~~~~~~~~~~~ 706 (1232)
+|+++|+|+.|. ++.+++|+||+|++||+++++|||||||||+|+.|++.++|++|+|.-+.- .....+.-...
T Consensus 1 MI~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~---~i~~~d~~~LR 74 (309)
T COG1125 1 MIEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGE---DISDLDPVELR 74 (309)
T ss_pred CceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCe---ecccCCHHHHH
Confidence 489999999997 468999999999999999999999999999999999999999999853320 00001111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhh-------h
Q 000904 707 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLD-------V 779 (1232)
Q Consensus 707 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~-------~ 779 (1232)
.-+.|++=+.+- | .|....+.+.--|- ....+..++-.|...-+..++++ .
T Consensus 75 r~IGYviQqigL--F------------------Ph~Tv~eNIa~VP~--L~~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry 132 (309)
T COG1125 75 RKIGYVIQQIGL--F------------------PHLTVAENIATVPK--LLGWDKERIKKRADELLDLVGLDPSEYADRY 132 (309)
T ss_pred Hhhhhhhhhccc--C------------------CCccHHHHHHhhhh--hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcC
Confidence 223333211110 0 00001111111110 11122223333333222222221 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhh
Q 000904 780 PFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRA 859 (1232)
Q Consensus 780 ~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIra 859 (1232)
|.. +++.-+.-..++-.....|.+++.+.|+..++...+........++++.-+.+--.+.+...|++.-...|-.
T Consensus 133 P~e----LSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~v 208 (309)
T COG1125 133 PHE----LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAV 208 (309)
T ss_pred chh----cCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEE
Confidence 111 1122222233444556788899999999999988877777777777777777766677777887765444444
Q ss_pred cc
Q 000904 860 FE 861 (1232)
Q Consensus 860 f~ 861 (1232)
++
T Consensus 209 m~ 210 (309)
T COG1125 209 MD 210 (309)
T ss_pred ec
Confidence 43
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.9e-12 Score=143.19 Aligned_cols=199 Identities=21% Similarity=0.304 Sum_probs=118.3
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccccccccccccc--CCCcch
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVE--NPNVST 704 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~~~~l~~~~~--~~~~~~ 704 (1232)
.|+++|++.+|+.. .+++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.-+.-.....+ ..+..-
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 68999999999742 2999999999999999999999999999999999999999999843321110000 000000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhh-----h
Q 000904 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLD-----V 779 (1232)
Q Consensus 705 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~-----~ 779 (1232)
.+. -|. ++=-...+....++++..+ .+..++-.|+..-...++.. .
T Consensus 80 VFQ--~yA-------LyPhmtV~~Niaf~Lk~~~--------------------~~k~ei~~rV~eva~~L~l~~lL~r~ 130 (338)
T COG3839 80 VFQ--NYA-------LYPHMTVYENIAFGLKLRG--------------------VPKAEIDKRVKEVAKLLGLEHLLNRK 130 (338)
T ss_pred EeC--Ccc-------ccCCCcHHHHhhhhhhhCC--------------------CchHHHHHHHHHHHHHcCChhHHhcC
Confidence 000 000 0000011112233444321 12223333332222222110 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhh
Q 000904 780 PFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRA 859 (1232)
Q Consensus 780 ~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIra 859 (1232)
|.. +++.-..-..++-..+..|.+++++.|+..++..+........+++.+.-+.+.-.+.+...|++.-...|-.
T Consensus 131 P~~----LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~V 206 (338)
T COG3839 131 PLQ----LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVV 206 (338)
T ss_pred ccc----CChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEE
Confidence 111 1122222334555566778889999999999998888877777777777677766777777777765555444
Q ss_pred cc
Q 000904 860 FE 861 (1232)
Q Consensus 860 f~ 861 (1232)
.+
T Consensus 207 m~ 208 (338)
T COG3839 207 MN 208 (338)
T ss_pred Ee
Confidence 43
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.6e-12 Score=157.99 Aligned_cols=106 Identities=16% Similarity=0.250 Sum_probs=87.1
Q ss_pred HHHHHHHHcCCcHHHHhhccCCcccccCCC------CCCChhHHHHHHHHHHHc----------cCCCEEEEeccC-CCC
Q 000904 1091 EIWEVLAKCHLGEAVREKENGLDSLVVEDG------SNWSMGQRQLFCLGRALL----------RRSRILVLDEAT-ASI 1153 (1232)
Q Consensus 1091 eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G------~nLSgGQRQrl~LARALL----------~~~kILILDEaT-s~L 1153 (1232)
.+.+.|+..+. ++...+|+++++.+++.| .+||||||||++||||++ .+|++|+||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 34555555442 333345777888887777 689999999999999887 589999999998 789
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeC-CEE
Q 000904 1154 DNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISD-GKL 1198 (1232)
Q Consensus 1154 D~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~-G~v 1198 (1232)
|..+...+.+.|++. ++.|||+|||+.+....+|++++|++ |+.
T Consensus 511 d~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 511 DAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred chhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 999999999999987 78899999999888888999999986 543
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.6e-11 Score=130.05 Aligned_cols=133 Identities=19% Similarity=0.169 Sum_probs=90.3
Q ss_pred cceeeeEEEeCC--cEEEEECCCCCChHHHHHHHhccc-cCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCc--cc
Q 000904 1002 VLKGISCTFEGG--HKIGIVGRTGSGKTTLIGALFRLV-EPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFN--GT 1076 (1232)
Q Consensus 1002 vL~~vsl~I~~G--ekvgIVGrtGSGKSTLl~~L~rl~-ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~--gT 1076 (1232)
|=+|+++ .++ .+++|+|+||+||||+++.+.... -+..|...... ..++++.+|...-+. .|
T Consensus 18 vpnd~~l--~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 18 VPNDTEI--GGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred EcceEEe--cCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 4444444 444 789999999999999999998422 15566655432 246788888753221 11
Q ss_pred HHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHH
Q 000904 1077 VRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA 1156 (1232)
Q Consensus 1077 Ir~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~ 1156 (1232)
+.+++ ..+ .-+-||+++|++++.+|++++||||++++|+.
T Consensus 85 i~~~~--------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 85 VSSGQ--------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred hhhcc--------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 11111 111 34568999999999999999999999999986
Q ss_pred H-HHHHHHHHHHhc-C---CcEEEEEecChhhhhhc
Q 000904 1157 T-DMILQKTIRAEF-A---DCTVITVAHRIPTVMDC 1187 (1232)
Q Consensus 1157 T-~~~Iq~~L~~~~-~---~~TVI~IAHrl~ti~~~ 1187 (1232)
. .......+++.. . ..++|++||+.+.+...
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 4 444455555432 2 24899999999988764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=129.50 Aligned_cols=63 Identities=33% Similarity=0.555 Sum_probs=56.5
Q ss_pred ceEEEEeeEEEecCCC-CCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 626 HVISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 626 ~~I~i~~~sfsw~~~~-~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
..++++|+++.|+... -.++|+||||+|.+||..+|+|+||||||||+++|+|..+|.+|+|.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~ 65 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSIL 65 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEE
Confidence 4689999999997532 12599999999999999999999999999999999999999999984
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-11 Score=131.41 Aligned_cols=68 Identities=9% Similarity=0.089 Sum_probs=49.9
Q ss_pred CCCCCChhHHHHHHHHHHHcc--CCCEEEEeccCCCCCHHHHHHH-HHHHHHhc--CCcEEEEEecChhhhhhcCe
Q 000904 1119 DGSNWSMGQRQLFCLGRALLR--RSRILVLDEATASIDNATDMIL-QKTIRAEF--ADCTVITVAHRIPTVMDCTM 1189 (1232)
Q Consensus 1119 ~G~nLSgGQRQrl~LARALL~--~~kILILDEaTs~LD~~T~~~I-q~~L~~~~--~~~TVI~IAHrl~ti~~~Dr 1189 (1232)
+.+.||+|++| +++++.. +|+++++||||+++|+.....+ +..++... .++++|++||+.+....+|+
T Consensus 58 ~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 58 GLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred cccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 34578888877 4555554 9999999999999999865554 45555432 37899999999986655663
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-10 Score=134.27 Aligned_cols=175 Identities=21% Similarity=0.317 Sum_probs=118.2
Q ss_pred ccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECC---eeCCC-----CChHhhhccEEEEcc--CC
Q 000904 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG---IDISK-----LGLHDLRSRFGIIPQ--DP 1070 (1232)
Q Consensus 1001 ~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG---~dI~~-----i~l~~LR~~i~iVpQ--dP 1070 (1232)
.+++++ +++.+|++++|+|+||+|||||+++|.|+.+|+.|.|.+.| .++.+ ++...+++.+.++.+ +|
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~ 225 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQP 225 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCC
Confidence 589999 99999999999999999999999999999999999999954 44443 455567788888865 33
Q ss_pred CCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCccccc-CCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 000904 1071 TLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVV-EDGSNWSMGQRQLFCLGRALLRRSRILVLDEA 1149 (1232)
Q Consensus 1071 ~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~-e~G~nLSgGQRQrl~LARALL~~~kILILDEa 1149 (1232)
.+ +++..+.-.+-+.|+..+ .|.|-.+- ++-.++-.-||. +++ .+.+|+ .
T Consensus 226 ~~-----------------~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~A~A~rE-isl---~~ge~P------~ 276 (438)
T PRK07721 226 AL-----------------MRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRVAMAQRE-IGL---AVGEPP------T 276 (438)
T ss_pred HH-----------------HHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHHHHHHHH-HHH---hcCCCC------c
Confidence 21 122222222222344433 25554332 221222111111 111 122333 5
Q ss_pred CCCCCHHHHHHHHHHHHHhc---CCc-----EEEEEecChhhhhhcCeEEEEeCCEEEEecChhH
Q 000904 1150 TASIDNATDMILQKTIRAEF---ADC-----TVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1150 Ts~LD~~T~~~Iq~~L~~~~---~~~-----TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
|+++|+.....+.+.+++.- .|. ||++.+||++. .-||++.++.||+|+..++..+
T Consensus 277 ~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 277 TKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 89999999998888887754 353 99999999984 4599999999999998876533
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-11 Score=127.17 Aligned_cols=61 Identities=36% Similarity=0.578 Sum_probs=57.2
Q ss_pred cceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 625 NHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 625 ~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
...|++++++++|. ++.+++||||+|++||.++|+|+|||||||||++|.|+++|++|+|.
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~ 66 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEE
Confidence 46899999999996 36899999999999999999999999999999999999999999983
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-11 Score=124.40 Aligned_cols=60 Identities=35% Similarity=0.582 Sum_probs=56.3
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
+|+++|++..|+.+ +++|+||||+|++||++-++||||+||||||+.|.|+..|+.|.+.
T Consensus 1 mI~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~ 60 (223)
T COG2884 1 MIRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60 (223)
T ss_pred CeeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEE
Confidence 48999999999864 5799999999999999999999999999999999999999999873
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.7e-11 Score=150.31 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=96.6
Q ss_pred ceEEEEeeEeEecCCCCccce-----eeeEEEeCC-cEEEEECCCCCChHHHHHHHhcc-ccCCccEEEECCeeCCCCCh
Q 000904 984 GKVDICDLQIRYRPDSPLVLK-----GISCTFEGG-HKIGIVGRTGSGKTTLIGALFRL-VEPAGGKILVDGIDISKLGL 1056 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~-----~vsl~I~~G-ekvgIVGrtGSGKSTLl~~L~rl-~ep~~G~I~IDG~dI~~i~l 1056 (1232)
|.+.++++.. |+++ .+|+++.+| ++++|+||||+||||+++++.+. +-+..|.
T Consensus 294 ~~i~l~~~rh-------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~------------- 353 (771)
T TIGR01069 294 GKIILENARH-------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI------------- 353 (771)
T ss_pred CCEEEccccC-------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC-------------
Confidence 4577766543 2333 378888887 89999999999999999999887 3333331
Q ss_pred HhhhccEEEEccCCC-CCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1057 HDLRSRFGIIPQDPT-LFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1057 ~~LR~~i~iVpQdP~-LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
+||.++. .+ .+.+++ +....+++ .+.++-+.||+|++|+..+++
T Consensus 354 --------~Vpa~~~~~~--~~~d~i--~~~i~~~~-----------------------si~~~LStfS~~m~~~~~il~ 398 (771)
T TIGR01069 354 --------PIPANEHSEI--PYFEEI--FADIGDEQ-----------------------SIEQNLSTFSGHMKNISAILS 398 (771)
T ss_pred --------CccCCccccc--cchhhe--eeecChHh-----------------------HHhhhhhHHHHHHHHHHHHHH
Confidence 4444431 00 001111 00011110 111233579999999999998
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHH-HHHHHh-cCCcEEEEEecChhhh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQ-KTIRAE-FADCTVITVAHRIPTV 1184 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq-~~L~~~-~~~~TVI~IAHrl~ti 1184 (1232)
++ .+|++++||||++++|+..-..+. ..++.. ..++++|++||..+..
T Consensus 399 ~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 399 KT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred hc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 87 789999999999999998887774 444432 2589999999998753
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.1e-11 Score=123.34 Aligned_cols=58 Identities=31% Similarity=0.498 Sum_probs=53.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
|+++|++++|+. +++|+|+||++++||.++|+|+||||||||+++|.|+++|.+|++.
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~ 58 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 478999999963 4799999999999999999999999999999999999999999874
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.9e-11 Score=131.53 Aligned_cols=55 Identities=35% Similarity=0.605 Sum_probs=49.7
Q ss_pred EEEEeeEEEecCCC-CCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCC
Q 000904 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 628 I~i~~~sfsw~~~~-~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~ 682 (1232)
++++|++.+|.... ...+++||||+|++||.+||||+|||||||+.++|+|++|+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~ 57 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK 57 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCC
Confidence 68999999997543 35799999999999999999999999999999999999984
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.6e-11 Score=130.22 Aligned_cols=63 Identities=30% Similarity=0.476 Sum_probs=56.8
Q ss_pred ceEEEEeeEEEecCCC-CCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 626 HVISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 626 ~~I~i~~~sfsw~~~~-~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
..++++|++++|+.+. .+++|+|+||+|++||.++|+|+||||||||+++|.|.++|++|++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 67 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI 67 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 4699999999997432 24799999999999999999999999999999999999999999874
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.2e-11 Score=124.72 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=65.8
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEec--cCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEE
Q 000904 1121 SNWSMGQRQLFCLGRALLRRSRILVLDE--ATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKL 1198 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~~kILILDE--aTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~v 1198 (1232)
..+|++++-+..+++..+++|+++++|| |+.++|....+.+.+.++ .+.++|.++|+-..-..+|+|..+.+|+|
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~~~i 153 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPGGRV 153 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCCcEE
Confidence 3589999999999999999999999999 555667666666666663 47899999999655566999999999999
Q ss_pred EEec
Q 000904 1199 AEYD 1202 (1232)
Q Consensus 1199 vE~g 1202 (1232)
.+..
T Consensus 154 ~~~~ 157 (174)
T PRK13695 154 YELT 157 (174)
T ss_pred EEEc
Confidence 9873
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-10 Score=144.51 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=71.1
Q ss_pred CCCChhHHHHHHHHHHHccC----CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCC
Q 000904 1121 SNWSMGQRQLFCLGRALLRR----SRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDG 1196 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~----~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G 1196 (1232)
..+||||+||++|||+++.. |++|||||||+++|..+...+.+.|++..++.|||+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 36899999999999999875 69999999999999999999999999876789999999999999889999999886
Q ss_pred E
Q 000904 1197 K 1197 (1232)
Q Consensus 1197 ~ 1197 (1232)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 4
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-10 Score=134.22 Aligned_cols=65 Identities=28% Similarity=0.380 Sum_probs=58.3
Q ss_pred CcceEEEEeeEEEecCCC--CCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 624 VNHVISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 624 ~~~~I~i~~~sfsw~~~~--~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.+..|+++|++|+|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|.++|.+|+|.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~ 84 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQ 84 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence 446899999999997432 24799999999999999999999999999999999999999999884
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-10 Score=128.44 Aligned_cols=65 Identities=23% Similarity=0.504 Sum_probs=58.7
Q ss_pred CcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 624 VNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 624 ~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
..+.++++|++++|+.+..+++|+|+||+|++||+++|+|+||||||||+++|.|+.+|.+|++.
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 72 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVL 72 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE
Confidence 45689999999999753334799999999999999999999999999999999999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.10 E-value=9e-11 Score=128.65 Aligned_cols=61 Identities=34% Similarity=0.483 Sum_probs=54.5
Q ss_pred EEEEeeEEEecCCC-CCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~-~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 62 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR 62 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEE
Confidence 46899999996421 14799999999999999999999999999999999999999999874
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-10 Score=127.96 Aligned_cols=61 Identities=31% Similarity=0.544 Sum_probs=55.2
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
+++++|++++|+.. .+++|+|+||+|++||+++|+|+||||||||+++|.|.++|.+|++.
T Consensus 1 ~l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 61 (216)
T TIGR00960 1 MIRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR 61 (216)
T ss_pred CeEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 37899999999632 24799999999999999999999999999999999999999999874
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.9e-11 Score=122.64 Aligned_cols=59 Identities=31% Similarity=0.606 Sum_probs=54.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
|+++|++++|+.+ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+|.+|++.
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG 59 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 4789999999632 4799999999999999999999999999999999999999999874
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-10 Score=123.07 Aligned_cols=60 Identities=43% Similarity=0.746 Sum_probs=54.3
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
|+++|++++|+.. ++++|+|+||+|++||+++|+|+||||||||+++|.|+.+|.+|++.
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 60 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 4789999999643 24799999999999999999999999999999999999999999873
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-10 Score=125.51 Aligned_cols=61 Identities=36% Similarity=0.519 Sum_probs=54.7
Q ss_pred EEEEeeEEEecCCC-CCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~-~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
++++|++..|.... ..++|+|+||+|++||+|+|+|||||||||||+.|-|...|++|.+.
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~ 63 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVL 63 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 67899999997432 24789999999999999999999999999999999999999999863
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-10 Score=129.36 Aligned_cols=61 Identities=34% Similarity=0.599 Sum_probs=55.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
++++|+++.|+...++++|+|+||++++||.++|+|+||||||||+++|+|+++|.+|++.
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~ 61 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL 61 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 4789999999754345799999999999999999999999999999999999999999874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-10 Score=127.41 Aligned_cols=61 Identities=21% Similarity=0.401 Sum_probs=54.8
Q ss_pred EEEEeeEEEecCCCC-CCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSS-KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~-~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
|+++|++++|+.... .++|+|+||++++||.++|+|+||||||||+++|.|+++|.+|++.
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 63 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT 63 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEE
Confidence 789999999974211 2799999999999999999999999999999999999999999873
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.9e-10 Score=120.44 Aligned_cols=61 Identities=34% Similarity=0.591 Sum_probs=56.7
Q ss_pred CcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccc
Q 000904 624 VNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687 (1232)
Q Consensus 624 ~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v 687 (1232)
.+..|+++|+++.|.. +++|+|||++|++||..+|+|+|||||||||+.+.|+.||.+|.+
T Consensus 28 ~~~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~ 88 (257)
T COG1119 28 NEPLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88 (257)
T ss_pred CcceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCce
Confidence 4467999999999963 689999999999999999999999999999999999999998876
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-10 Score=127.98 Aligned_cols=60 Identities=30% Similarity=0.566 Sum_probs=54.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
++++|+++.|+.. ++++|+|+||++++||.++|+|+||||||||+++|.|.++|++|++.
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 4789999999642 25799999999999999999999999999999999999999999874
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-10 Score=126.94 Aligned_cols=60 Identities=25% Similarity=0.522 Sum_probs=54.8
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
+++++|++++|+. ++++|+|+||+|++||.++|+|+||||||||+++|+|+.+|.+|++.
T Consensus 1 ~l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 60 (214)
T TIGR02673 1 MIEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60 (214)
T ss_pred CEEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 3789999999952 25799999999999999999999999999999999999999999874
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-10 Score=123.26 Aligned_cols=58 Identities=38% Similarity=0.606 Sum_probs=53.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
|+++|++++|+. +++++|+||++++||.++|+|+||||||||+++|.|++++++|++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 478999999963 4799999999999999999999999999999999999999999874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-10 Score=131.67 Aligned_cols=62 Identities=34% Similarity=0.583 Sum_probs=56.5
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.++++|++++|+....+++|+|+||+|++||.++|+|+||||||||+++|.|+++|.+|++.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 65 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 68999999999743334699999999999999999999999999999999999999999874
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-10 Score=127.71 Aligned_cols=62 Identities=29% Similarity=0.480 Sum_probs=56.8
Q ss_pred CcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 624 VNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 624 ~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.+..|+++|++++|+. +++++|+||+|++||+++|+|+||||||||+++|.|+.+|++|++.
T Consensus 4 ~~~~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 65 (225)
T PRK10247 4 NSPLLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLL 65 (225)
T ss_pred CCceEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE
Confidence 3457999999999963 5799999999999999999999999999999999999999999874
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-10 Score=125.59 Aligned_cols=62 Identities=34% Similarity=0.511 Sum_probs=56.3
Q ss_pred eEEEEeeEEEecCC-CCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCC---Ccccccc
Q 000904 627 VISIKSASFSWEES-SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP---HTQGTIL 688 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~-~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~---~~~G~v~ 688 (1232)
.+.++|++|.|+.. +++++|+|+||+|++||+++|+|+||||||||+++|.|.++ |.+|++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~ 68 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIH 68 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEE
Confidence 47899999999864 35689999999999999999999999999999999999999 7899873
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-10 Score=125.58 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHccCCCEEEEeccC-----CCCCHHHHHHHHHHHHHh
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEAT-----ASIDNATDMILQKTIRAE 1168 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaT-----s~LD~~T~~~Iq~~L~~~ 1168 (1232)
|+|+..|||+++.+|+++++|||| ++||+.+.+.+.+.+++.
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999874
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-10 Score=129.09 Aligned_cols=58 Identities=36% Similarity=0.625 Sum_probs=53.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|.|.++|.+|++.
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~ 58 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 478999999963 4799999999999999999999999999999999999999999874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-10 Score=127.31 Aligned_cols=58 Identities=34% Similarity=0.546 Sum_probs=53.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
++++|++++|+. +++|+|+||+|++||.++|+|+||||||||+++|.|.++|.+|++.
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~ 58 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 478999999963 5799999999999999999999999999999999999999999874
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-10 Score=126.90 Aligned_cols=61 Identities=33% Similarity=0.497 Sum_probs=55.0
Q ss_pred EEEEeeEEEecCCC-CCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~-~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|.+|++.
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 63 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVL 63 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 78999999996422 24799999999999999999999999999999999999999999873
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-10 Score=121.41 Aligned_cols=60 Identities=38% Similarity=0.694 Sum_probs=54.5
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
|+++|++++|+.. ++++++|+||++++||+++|+|++|||||||+++|.|+++|.+|++.
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 60 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 4789999999742 34799999999999999999999999999999999999999999874
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1232 | ||||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-46 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-44 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-39 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-37 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 6e-36 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-35 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 9e-34 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-35 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 9e-35 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-34 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 6e-33 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-31 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-31 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-31 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 6e-31 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-31 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-28 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-31 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-28 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-30 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 6e-30 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 6e-30 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 9e-29 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-27 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-25 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-25 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-24 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-24 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-20 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-12 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 4e-12 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 9e-12 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-11 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-11 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-10 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 6e-10 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-09 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 4e-08 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 4e-08 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 4e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 6e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 7e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 8e-08 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-07 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-07 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-07 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-07 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-07 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 6e-07 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 9e-07 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-06 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-06 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-06 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 5e-06 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 6e-06 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 6e-06 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 8e-06 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 9e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 9e-06 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-05 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-05 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-05 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 6e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-05 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-04 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-04 |
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1232 | |||
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-149 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 4e-07 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-78 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 3e-26 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-77 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-25 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 8e-77 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-25 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-71 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 9e-18 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-66 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-13 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-64 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 7e-61 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 9e-15 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 8e-14 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 4e-63 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 5e-08 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-60 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 3e-07 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 2e-58 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 7e-09 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-56 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-07 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 3e-52 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 6e-10 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-50 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-05 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-28 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 7e-25 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 8e-26 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 3e-22 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-25 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 7e-23 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-24 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-07 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-23 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-09 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-23 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 8e-09 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 5e-23 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 6e-21 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-19 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-08 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-19 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-07 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 9e-19 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-09 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-05 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-18 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-13 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-06 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-05 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-17 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-05 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 8e-13 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-05 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-04 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 9e-17 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-16 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-14 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-06 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 8e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 3e-12 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 3e-07 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-11 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 3e-11 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 7e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 9e-04 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 1e-10 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 3e-07 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-10 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 3e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-08 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 5e-06 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 6e-08 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-06 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 8e-06 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-05 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 4e-05 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-04 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 6e-04 |
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 454 bits (1171), Expect = e-149
Identities = 90/254 (35%), Positives = 147/254 (57%), Gaps = 3/254 (1%)
Query: 970 VVEDN--RPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKT 1027
++E++ + WP G++ + DL +Y +L+ IS + G ++G++GRTGSGK+
Sbjct: 2 LIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKS 61
Query: 1028 TLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQH 1087
TL+ A RL+ G +I +DG+ + L R FG+IPQ +F+GT R NLDP + H
Sbjct: 62 TLLSAFLRLLNTEG-EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120
Query: 1088 TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLD 1147
+DQEIW+V + L + + LD ++V+ G S G +QL CL R++L +++IL+LD
Sbjct: 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 1148 EATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKL 1207
E +A +D T I+++T++ FADCTVI RI +++C L I + K+ +YD ++L
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240
Query: 1208 MKREGSLFGQLVRE 1221
F
Sbjct: 241 YHYPADRFVAGFIG 254
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 4e-07
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+++K + + E + NIS + PGQ+V + G GSGKSTLL+A L + +T+G I
Sbjct: 20 MTVKDLTAKYTEGG-NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGEI 77
Query: 688 L 688
Sbjct: 78 Q 78
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 269 bits (690), Expect = 1e-78
Identities = 118/528 (22%), Positives = 222/528 (42%), Gaps = 49/528 (9%)
Query: 707 LIVVYLLIGFVSTL--FLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRV 764
L + ++ + + +L + + ++ IR K L++ L FY + +G+V
Sbjct: 67 LFIFVIVRPPIEFIRQYLAQWTSNKILYDIR--KKLYNHLQ----ALSARFYANNQVGQV 120
Query: 765 LSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQ---VLFVSIPVIFLAI-- 819
+SRV +D+ + L+ L ++ + + P L +
Sbjct: 121 ISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYV 180
Query: 820 ---RLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAF----EEEDRFFAKNLD 872
RL++ ++ L + G L E + G +++F E F KN +
Sbjct: 181 FFGRLRKLTRERSQALAEVQG--------FLHERVQGISVVKSFAIEDNEAKNFDKKNTN 232
Query: 873 LIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLS 932
+ A + I + + ++ + + G+ T G + + Y
Sbjct: 233 FLTRALKHTR-WNAYSFAAINTVTDIGPIIVIGVGAYLAIS--GSITVGTLAAFVGYLEL 289
Query: 933 LNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQ 992
L L + + TL S++R+ Q + E ++ P G++DI +
Sbjct: 290 LFGPLRRLVASFTTLTQSFASMDRVFQLI---DEDYDIKNGVGAQPIEIKQGRIDIDHVS 346
Query: 993 IRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS 1052
+Y + +LK I+ + E G + VG +G GK+TLI + R + G+IL+DG +I
Sbjct: 347 FQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIK 406
Query: 1053 KLGLHDLRSRFGIIPQDPTLFNGTVRYN-----LDPLSQHTDQEIWEVLAKCHLGEAVRE 1107
LR++ G++ QD LF+ TV+ N TD+E+ E + + +
Sbjct: 407 DFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA----TDEEVVEAAKMANAHDFIMN 462
Query: 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA 1167
G D+ V E G S GQ+Q + R L IL+LDEAT+++D ++ I+Q+ +
Sbjct: 463 LPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV 522
Query: 1168 EFADCTVITVAHRIPTVMDCTMVLAISDGKLAE---YDEPMKLMKREG 1212
D T + VAHR+ T+ ++ I +G + E + E L+ ++G
Sbjct: 523 LSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRE---LIAKQG 567
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 3e-26
Identities = 71/391 (18%), Positives = 137/391 (35%), Gaps = 45/391 (11%)
Query: 308 YWRDIFMSGFFALLKVLTLSAGPLLLNAFI--LVTEGKAGFKYEGY----VLAITLFVAK 361
Y IF + ++K PLL+ I ++ + + + I LF+
Sbjct: 12 YKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFV 71
Query: 362 ILESLSQRQWYFRSRL---IGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDA 418
I+ + + R L K+ + +Y LS + G++++ V D
Sbjct: 72 IVRPPIE---FIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDV 128
Query: 419 YRIGEFPFWFH----QIWTTSVQLCIALIILFHA-VGLATIAALVVIMITVLCNAPLAKL 473
+ +F IW + + IAL I+F V L A + + +L
Sbjct: 129 EQTKDF---ILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRL 185
Query: 474 QHKFQTKLMVAQDERLKACS----EALVNMKVLKLYAWETH----FKNAIEILRNVEYKW 525
+ + + + L E + + V+K +A E + F +
Sbjct: 186 RKLTR-----ERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLT---RA 237
Query: 526 LSAVQLRKAYNTFL-FWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVI 584
L + + + + GA ++ + + FV L L+ P+R +
Sbjct: 238 LKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRL 297
Query: 585 PDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGN---IENVNHVISIKSASFSWEESS 641
Q+ + R+ ++ +I+ IE I I SF + ++
Sbjct: 298 VASFTTLTQSFASMDRVFQLIDEDY----DIKNGVGAQPIEIKQGRIDIDHVSFQYNDNE 353
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTL 672
P +++I+L + G+ VA G G GKSTL
Sbjct: 354 -APILKDINLSIEKGETVAFVGMSGGGKSTL 383
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 266 bits (682), Expect = 2e-77
Identities = 129/603 (21%), Positives = 253/603 (41%), Gaps = 67/603 (11%)
Query: 639 ESSSKPTMRNISLEVRPGQK----VAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLA 694
+ S+ T R + + P + I + + T + ++L +L + +
Sbjct: 6 DLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKP-------LLDDGFGK 58
Query: 695 ANVENPNVSTLRLIVVYLLIG---FVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRA 751
+ L +I + +L G ++S+ + +S VV+ +R + LF ++
Sbjct: 59 TDRSVLLWMPLVVIGLMILRGITSYISS-YCISWVSGKVVMTMR--RRLFGHMM----GM 111
Query: 752 PMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQ---VL 808
P++F+D G +LSR++ D V +LI V + ++ +WQ +L
Sbjct: 112 PVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIIL 171
Query: 809 FVSIPVIFLAI-----RLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAF--- 860
V P++ +AI R + + ++ + + G + F
Sbjct: 172 VVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTT--------SAEQMLKGHKEVLIFGGQ 223
Query: 861 -EEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVL---LPPG 916
E RF + + + ++ +IQ + +L+ + AA + L G
Sbjct: 224 EVETKRFDKVSNKMRLQGMK-MVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAG 282
Query: 917 TFTPGFIGMALSYGLSLN--SSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDN 974
T T ++ L +++ Q +A + + L + E E
Sbjct: 283 TIT-VVFSSMIALMRPLKSLTNVNAQFQR--GMA----ACQTLFAILDSE---QEKDEGK 332
Query: 975 RPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALF 1034
R G ++ ++ Y L+ I+ G + +VGR+GSGK+T+ +
Sbjct: 333 RVID--RATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 390
Query: 1035 RLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYN--LDPLSQHTDQEI 1092
R + G IL+DG D+ + L LR++ ++ Q+ LFN TV N +++ ++I
Sbjct: 391 RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQI 450
Query: 1093 WEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATAS 1152
E + + + + +NGLD+++ E+G S GQRQ + RALLR S IL+LDEAT++
Sbjct: 451 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510
Query: 1153 IDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEY---DEPMKLMK 1209
+D ++ +Q + + T + +AHR+ T+ ++ + DG + E E L+
Sbjct: 511 LDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSE---LLA 567
Query: 1210 REG 1212
+ G
Sbjct: 568 QHG 570
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-25
Identities = 61/393 (15%), Positives = 148/393 (37%), Gaps = 26/393 (6%)
Query: 308 YWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEG-YVLAITLFVAKILESL 366
+ + ++G +L + + LL L+ +G + + + IL +
Sbjct: 23 FKAGLIVAGIALILNAASDTFMLSLLK--PLLDDGFGKTDRSVLLWMPLVVIGLMILRGI 80
Query: 367 SQRQWYFRSRL---IGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGE 423
+ Y S + KV + ++ + + A S G +++ +T D+ ++
Sbjct: 81 TS---YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVAS 137
Query: 424 -FPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTKLM 482
+ + I++F+ +I +V+ I + + + +F++
Sbjct: 138 SSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSI---AIRVVSKRFRSISK 194
Query: 483 VAQD---ERLKACSEALVNMKVLKLYAWETH----FKNAIEILRNVEYKWLSAVQLRKAY 535
Q+ + + + L K + ++ + F +R K +SA +
Sbjct: 195 NMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPI 254
Query: 536 NTFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQAN 595
+ + V + + L A + +++ + P++ + +V F +
Sbjct: 255 IQLIASLALAFV--LYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGM 312
Query: 596 VAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRP 655
A + L++ + + R I+ + ++ +F++ P +RNI+L++
Sbjct: 313 AACQTLFAILDSEQEKDEGKRV---IDRATGDLEFRNVTFTY-PGREVPALRNINLKIPA 368
Query: 656 GQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
G+ VA+ G GSGKST+ + I +G IL
Sbjct: 369 GKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 264 bits (678), Expect = 8e-77
Identities = 131/605 (21%), Positives = 252/605 (41%), Gaps = 67/605 (11%)
Query: 637 WEESSSKPTMRNISLEVRPGQK----VAICGEVGSGKSTLLAAILGEVPHTQGTILQNSW 692
+ S+ T + + +R + I + + T + ++L +L +
Sbjct: 4 HSDESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKP-------LLDEGF 56
Query: 693 LAANVENPNVSTLRLIVVYLL---IGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLF 749
A + ++ + + GF S+ + +S +VV+ +R + LF+ +
Sbjct: 57 GNAESNFLRILPFMILGLMFVRGLSGFASS-YCLSWVSGNVVMQMR--RRLFNHFM---- 109
Query: 750 RAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQ--- 806
P+ F+D G +LSR++ D V +L+ V + L ++ +WQ
Sbjct: 110 HMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSL 169
Query: 807 VLFVSIPVIFLAI-----RLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAF- 860
VL V PV+ AI R ++ + + + + G + ++
Sbjct: 170 VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTS--------SAEQMLKGHKVVLSYG 221
Query: 861 ---EEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVL---LP 914
E RF + + + + +IQ + +L+ + A + L
Sbjct: 222 GQEVERKRFDKVSNSMRQQTMK-LVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELT 280
Query: 915 PGTFTPGFIGMALSYGLSLN--SSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVE 972
PGTFT L +S+ Q +A + + L M E
Sbjct: 281 PGTFT-VVFSAMFGLMRPLKALTSVTSEFQR--GMA----ACQTLFGLMD---LETERDN 330
Query: 973 DNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGA 1032
V G+VD+ D+ Y+ L +S + G + +VGR+GSGK+T+
Sbjct: 331 GKYEAE--RVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANL 388
Query: 1033 LFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYN--LDPLSQHTDQ 1090
R + G I +DG D+ L +LR F ++ Q+ LFN T+ N ++T +
Sbjct: 389 FTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTRE 448
Query: 1091 EIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEAT 1150
+I + + H E + GLD+++ E+G++ S GQRQ + RALLR + +L+LDEAT
Sbjct: 449 QIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEAT 508
Query: 1151 ASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAE---YDEPMKL 1207
+++D ++ +Q + + TV+ +AHR+ T+ +L + +G++ E + + L
Sbjct: 509 SALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHAD---L 565
Query: 1208 MKREG 1212
+ ++G
Sbjct: 566 LAQDG 570
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 2e-25
Identities = 58/389 (14%), Positives = 130/389 (33%), Gaps = 18/389 (4%)
Query: 308 YWRDIFMSGFFALLKVLTLSAGPLLLNAFI--LVTEGKAGFKYEGYVLAITLFVAKILES 365
Y + +S ++ + LL + ++ F +L + +
Sbjct: 23 YKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLR---ILPFMILGLMFVRG 79
Query: 366 LSQ-RQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGE- 423
LS Y S + V + ++ + + S G +++ +T D+ ++
Sbjct: 80 LSGFASSYCLSW-VSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGA 138
Query: 424 FPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTKLMV 483
I + L ++F ++ +VV + + ++K K +
Sbjct: 139 TSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQT 198
Query: 484 AQDERLKACSEALVNMKVLKLYAWETH----FKNAIEILRNVEYKWLSAVQLRKAYNTFL 539
A + + L KV+ Y + F +R K +SA + +
Sbjct: 199 AMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMI 258
Query: 540 FWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFS 599
+ V + + L + + + P++ + V F + A
Sbjct: 259 ASLALFAV--LFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQ 316
Query: 600 RIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKV 659
+ ++ + + E VN + +K +F+++ KP + ++S + G+ V
Sbjct: 317 TLFGLMDLETERDNGKYE---AERVNGEVDVKDVTFTYQG-KEKPALSHVSFSIPQGKTV 372
Query: 660 AICGEVGSGKSTLLAAILGEVPHTQGTIL 688
A+ G GSGKST+ G+I
Sbjct: 373 ALVGRSGSGKSTIANLFTRFYDVDSGSIC 401
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 250 bits (641), Expect = 1e-71
Identities = 154/598 (25%), Positives = 263/598 (43%), Gaps = 66/598 (11%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVENPNV 702
T+R + +RP I V S++L + P+ G + ++ +
Sbjct: 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVL---SPYLIGKTIDVVFVPRRFDLLPR 78
Query: 703 STLRLIVVYLLIGFVSTL--FLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTP 760
L L +Y L + L +M VV +R K LF +L + P+ F+D TP
Sbjct: 79 YMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLR--KELFEKL-QRV---PVGFFDRTP 132
Query: 761 LGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQ---VLFVSIPVIFL 817
G ++SRV +D+ ++ + S+I + ++ V V +P+ L
Sbjct: 133 HGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVL 192
Query: 818 AIRL-----QRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAF----EEEDRFFA 868
++ ++Y++ + L +LNG + E I+G I+ F +E ++F
Sbjct: 193 ITQIVSSQTRKYFYENQRVLGQLNG--------IIEEDISGLTVIKLFTREEKEMEKFDR 244
Query: 869 KNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALS 928
N L + L+ + L +IS + L T G I +
Sbjct: 245 VNESLRKVGTKAQIFSGVLPP-LMNMVNNLGFALISGFGGWLALK--DIITVGTIATFIG 301
Query: 929 YGLSLN------SSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPV 982
Y S+ IQ LA S ER+ + + + E +D V
Sbjct: 302 YSRQFTRPLNELSNQFNMIQM--ALA----SAERIFEIL----DLEEEKDDPDAVELREV 351
Query: 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGG 1042
G+++ ++ Y P+ LK I+ + G K+ +VG TGSGKTT++ L R + G
Sbjct: 352 RGEIEFKNVWFSYDKKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410
Query: 1043 KILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYN-----LDPLSQHTDQEIWEVLA 1097
+ILVDGIDI K+ LRS GI+ QD LF+ TV+ N TD+EI E
Sbjct: 411 QILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGA----TDEEIKEAAK 466
Query: 1098 KCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT 1157
H ++ G ++++ ++G + S GQRQL + RA L +IL+LDEAT+++D T
Sbjct: 467 LTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT 526
Query: 1158 DMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAE---YDEPMKLMKREG 1212
+ +Q + T I +AHR+ T+ + +++ + DG++ E +DE L+++ G
Sbjct: 527 EKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDE---LIQKRG 581
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 9e-18
Identities = 78/386 (20%), Positives = 147/386 (38%), Gaps = 44/386 (11%)
Query: 308 YWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLS 367
+ + M F + + P L+ I V F + I + L SL
Sbjct: 35 HTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIY-ALTSLL 93
Query: 368 QRQWYFRSRL---IGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGE- 423
+ + ++ + V L +++K R+ G+I++ V D I
Sbjct: 94 F---WLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNV 150
Query: 424 FPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKF----QT 479
Q ++ V L A+I++F + ++ L ++ +TVL ++ K+ Q
Sbjct: 151 LGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQR 210
Query: 480 KL--MVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNT 537
L + E E + + V+KL+ E + +E V LRK
Sbjct: 211 VLGQLNGIIE------EDISGLTVIKLFTRE---EKEMEKFDRVNES------LRKVGTK 255
Query: 538 FLFWSS---PVL--------VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPD 586
+S P++ + FG L + + TF+ R P+ + +
Sbjct: 256 AQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSN 315
Query: 587 VIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTM 646
+ A + RI L+ E + + + V I K+ FS+++ KP +
Sbjct: 316 QFNMIQMALASAERIFEILDLEEEK--DDPDAVELREVRGEIEFKNVWFSYDK--KKPVL 371
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTL 672
++I+ ++PGQKVA+ G GSGK+T+
Sbjct: 372 KDITFHIKPGQKVALVGPTGSGKTTI 397
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 238 bits (608), Expect = 4e-64
Identities = 121/618 (19%), Positives = 246/618 (39%), Gaps = 67/618 (10%)
Query: 637 WEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAAN 696
+E + I + G A I G + I +
Sbjct: 684 LDEDVPPASFWRILKLNSTEWPYFVVG-------IFCAIINGGLQPAFSVIFSKV-VGVF 735
Query: 697 VENPNVSTLRLIV-----VYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRA 751
T R ++L++G +S + + + G +K L + S+ R
Sbjct: 736 TNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQ 795
Query: 752 PMSFYD----STPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQ- 806
+S++D +T G + +R+++D + V L N + + + + WQ
Sbjct: 796 DVSWFDDPKNTT--GALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQL 853
Query: 807 --VLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED 864
+L +P+I +A ++ + + E+I T+ + E
Sbjct: 854 TLLLLAIVPIIAIAGVVEMKMLSGQALKDK---KELEGSGKIATEAIENFRTVVSLTREQ 910
Query: 865 RF---FAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSA-AFCM----VLLPPG 916
+F +A++L + NA + + + ++ + A L+
Sbjct: 911 KFETMYAQSLQIPYRNA--MKKAHVFGITF-----SFTQAMMYFSYAAAFRFGAYLVTQQ 963
Query: 917 TFTPG-----FIGMALS-YGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEV 970
T F + + SS A++II + + S
Sbjct: 964 LMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLK 1023
Query: 971 VEDNRPPPNWPVVGKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTT 1028
+ G V + Y RP P VL+G+S + G + +VG +G GK+T
Sbjct: 1024 PNM--------LEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKST 1074
Query: 1029 LIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL---DPLS 1085
++ L R +P G + +DG +I +L + LR++ GI+ Q+P LF+ ++ N+ D
Sbjct: 1075 VVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSR 1134
Query: 1086 QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV 1145
+ +EI + ++ + + + ++ V + G+ S GQ+Q + RAL+R+ IL+
Sbjct: 1135 VVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILL 1194
Query: 1146 LDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAE---YD 1202
LDEAT+++D ++ ++Q+ + T I +AHR+ T+ + +++ I +GK+ E +
Sbjct: 1195 LDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQ 1254
Query: 1203 EPMKLMKREGSLFGQLVR 1220
+ L+ ++G F +V
Sbjct: 1255 Q---LLAQKGIYF-SMVS 1268
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 7e-61
Identities = 105/540 (19%), Positives = 222/540 (41%), Gaps = 42/540 (7%)
Query: 701 NVSTLRLIVVYLLIG-FVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDST 759
++T + G + +S + R + + +++ + ++D
Sbjct: 106 EMTTYAYYYTGIGAGVLIVAYIQVS---FWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH 162
Query: 760 PLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQ---VLFVSIPVIF 816
+G + +R++ D+S ++ + + A + + W+ V+ PV+
Sbjct: 163 DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLG 222
Query: 817 LAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAK-NLDLID 875
L+ + ++ + + E +A T+ AF + + + N +L +
Sbjct: 223 LSAGIWAKILSSFTDKEL---HAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEE 279
Query: 876 TNASPFFQTFAANEWLIQRLETLSATVISSAAFCM---------VLLPPGTFTPGFIGMA 926
+ AN +S + L+ ++ G +
Sbjct: 280 AKRLGIKKAITAN---------ISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTV 330
Query: 927 LSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKV 986
L S+ + N AN + + + + + P N + G +
Sbjct: 331 FFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDN--IQGNL 388
Query: 987 DICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
+ ++ Y R + +LKG++ + G + +VG +G GK+T + + RL +P G +
Sbjct: 389 EFKNIHFSYPSRKEVQ-ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 1045 LVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDP-LSQHTDQEIWEVLAKCHLGE 1103
+DG DI + + LR G++ Q+P LF T+ N+ T EI + + + + +
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507
Query: 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQK 1163
+ + + D+LV E G+ S GQ+Q + RAL+R +IL+LDEAT+++D ++ ++Q
Sbjct: 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567
Query: 1164 TIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAE---YDEPMKLMKREGSLFGQLVR 1220
+ T I +AHR+ TV + ++ G + E +DE LM+ +G ++ +LV
Sbjct: 568 ALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDE---LMREKG-IYFKLVM 623
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 9e-15
Identities = 75/409 (18%), Positives = 137/409 (33%), Gaps = 79/409 (19%)
Query: 352 VLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNA--ARLMHSGGE 409
+L I F+ L Q + + G + L ++K LR + ++ G
Sbjct: 757 ILGIISFITFFL------QGFTFGK-AGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGA 809
Query: 410 IMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIA-------ALVVIM- 461
+ + DA ++ T +L + + + I+ L+++
Sbjct: 810 LTTRLANDAAQVKGA---------TGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAI 860
Query: 462 --ITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILR 519
I + K+ K + K +EA+ N + + E F+
Sbjct: 861 VPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFET------ 914
Query: 520 NVEYKWLSAVQLRKAYNTFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQD 579
Y + R A V TF + +Y S F LV
Sbjct: 915 --MYAQSLQIPYRNAM-------KKAHVFGITFSFTQAM---MYFSYAAAFRFGAYLVTQ 962
Query: 580 PIRVIPDVIGVFI--------------------QANVAFSRIVNFLE-APELQSMNIRQK 618
+ +V+ VF +A V+ S I+ +E PE+ S + +
Sbjct: 963 QLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGL 1022
Query: 619 GNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG 678
+ + F++ S P ++ +SLEV+ GQ +A+ G G GKST++ +
Sbjct: 1023 -KPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081
Query: 679 EVPHTQGTILQNSWLAANVENPNVSTLRLIVVYLLIGFVS---TLFLMS 724
G++ + ++ NV LR +G VS LF S
Sbjct: 1082 FYDPMAGSVFLDG---KEIKQLNVQWLR-----AQLGIVSQEPILFDCS 1122
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 8e-14
Identities = 69/386 (17%), Positives = 134/386 (34%), Gaps = 41/386 (10%)
Query: 352 VLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIM 411
+ + + ++ W + K+R AI + +H GE+
Sbjct: 116 GIGAGVLIVAYIQVSF---WCLAAGRQIHKIRQKFFHAI----MNQEIGWFDVHDVGELN 168
Query: 412 NYVTVDAYRI----GE-FPFWFHQIWTTSVQLCIALIILFHA---VGLATIAALVVIMIT 463
+T D +I G+ +F + II F + L +A V+ ++
Sbjct: 169 TRLTDDVSKINEGIGDKIGMFFQAM----ATFFGGFIIGFTRGWKLTLVILAISPVLGLS 224
Query: 464 VLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETH----FKNAIEILR 519
AK+ F K + A + E L ++ + + + + N +E +
Sbjct: 225 AGI---WAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAK 281
Query: 520 NVEYKWLSAVQLRKAYNTFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQD 579
+ K + L ++S L +G ++ V T ++ +
Sbjct: 282 RLGIKKAITANISMGAAFLLIYASYALAFW--YGTSLVISKEYSIGQVLTVFFSVLIGAF 339
Query: 580 PIRVIPDVIGVFIQANVAFSRIVNFLEA-PELQSMNIRQKGNIENVNHVISIKSASFSWE 638
+ I F A A + ++ P + S + +N+ + K+ FS+
Sbjct: 340 SVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGH-KPDNIQGNLEFKNIHFSYP 398
Query: 639 ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVE 698
++ ++L+V+ GQ VA+ G G GKST + + G + + ++
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDG---QDIR 455
Query: 699 NPNVSTLRLIVVYLLIGFVS---TLF 721
NV LR I IG VS LF
Sbjct: 456 TINVRYLREI-----IGVVSQEPVLF 476
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 4e-63
Identities = 126/519 (24%), Positives = 229/519 (44%), Gaps = 63/519 (12%)
Query: 712 LLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSF----YDSTPLGRVLSR 767
L++ + + + V +S++ + L LFR +SF + +++R
Sbjct: 70 LIVALIGAVG----GIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITR 125
Query: 768 VSSDLSIVDLDVPFSL-------IFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAI- 819
+++D++ + V L + VG A S L+ V L IP I L
Sbjct: 126 LTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSV----LIFLIPPIVLLFV 181
Query: 820 ----RLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAF----EEEDRFFAKNL 871
+ + + +N + E++ G +RAF E + F N
Sbjct: 182 WLTKKGNPLFRKIQESTDEVNRVVR--------ENLLGVRVVRAFRREEYENENFRKANE 233
Query: 872 DLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMAL-SYG 930
L + S F L + ++ +I+ F VL+ G I MA +Y
Sbjct: 234 SLRRSIIS-AFSLIVFALPLFIFI--VNMGMIAVLWFGGVLVRNNQMEIGSI-MAYTNYL 289
Query: 931 LSLNSSLVMSIQNQCTLANYII-------SVERLNQYMHVPSEAPEVVEDNRPPPNWPVV 983
+ + SL+M + N + S +R+ + V +E P + E + V
Sbjct: 290 MQIMFSLMM-------IGNILNFIVRASASAKRVLE---VLNEKPAIEEADNALALPNVE 339
Query: 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043
G V +++ RY ++ VL G++ + + G + ++G TGSGK+TL+ + RL++P G+
Sbjct: 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR 399
Query: 1044 ILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL---DPLSQHTDQEIWEVLAKCH 1100
+ VD +D+ + L DLR +PQ+ LF+GT++ NL TD EI E
Sbjct: 400 VEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQ 457
Query: 1101 LGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMI 1160
+ + + G DS V G N+S GQ+Q + RAL+++ ++L+LD+ T+S+D T+
Sbjct: 458 IHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKR 517
Query: 1161 LQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLA 1199
+ ++ CT + +IPT + +L + +GK+A
Sbjct: 518 ILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVA 556
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 5e-08
Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 29/146 (19%)
Query: 587 VIGVFIQANVAFSRIVNFLEA------PELQSMNIRQKGNIENVNHVISIKSASFSWEES 640
++ ++A+ + R++ L + +G++ +V F + E+
Sbjct: 302 ILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVS-FENV------EFRYFEN 354
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI--LGEVPHTQGTILQNSWLAANVE 698
+ P + ++ V+PG VA+ GE GSGKSTL+ I L + +G + + +V
Sbjct: 355 T-DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVD---ELDVR 408
Query: 699 NPNVSTLRLIVVYLLIGFV---STLF 721
+ LR I V + LF
Sbjct: 409 TVKLKDLR-----GHISAVPQETVLF 429
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 1e-60
Identities = 75/244 (30%), Positives = 136/244 (55%), Gaps = 9/244 (3%)
Query: 982 VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG 1041
+ +++ RY+PDSP++L I+ + + G IGIVGR+GSGK+TL + R P
Sbjct: 4 HHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 1042 GKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL---DPLSQHTDQEIWEV--L 1096
G++L+DG D++ + LR + G++ QD L N ++ N+ +P + +++ L
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKL 121
Query: 1097 AKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA 1156
A H + + E G +++V E G+ S GQRQ + RAL+ +IL+ DEAT+++D
Sbjct: 122 AGAH--DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 1157 TDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFG 1216
++ ++ + + TVI +AHR+ TV + ++ + GK+ E + +L+ SL+
Sbjct: 180 SEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239
Query: 1217 QLVR 1220
L +
Sbjct: 240 YLYQ 243
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 3e-07
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 618 KGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL 677
+I ++ F ++ S + NI+L ++ G+ + I G GSGKSTL I
Sbjct: 5 HHDIT-FRNI------RFRYKPDS-PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ 56
Query: 678 GEVPHTQGTIL 688
G +L
Sbjct: 57 RFYIPENGQVL 67
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 202 bits (517), Expect = 2e-58
Identities = 75/265 (28%), Positives = 131/265 (49%), Gaps = 9/265 (3%)
Query: 951 IISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTF 1010
I +E + + EV + P G+++ ++ Y L+ +S T
Sbjct: 22 FIDMENMFDLLKEE---TEVKDLPGAGPLRFQKGRIEFENVHFSYADGRE-TLQDVSFTV 77
Query: 1011 EGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDP 1070
G + +VG +G+GK+T++ LFR + + G I +DG DIS++ LRS G++PQD
Sbjct: 78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDT 137
Query: 1071 TLFNGTVRYNL---DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQ 1127
LFN T+ N+ + + E+ + +A+ G + V E G S G+
Sbjct: 138 VLFNDTIADNIRYGRVTA--GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGE 195
Query: 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDC 1187
+Q + R +L+ I++LDEAT+++D + + +Q ++ A+ T I VAHR+ TV++
Sbjct: 196 KQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNA 255
Query: 1188 TMVLAISDGKLAEYDEPMKLMKREG 1212
+L I DG + E L+ R G
Sbjct: 256 DQILVIKDGCIVERGRHEALLSRGG 280
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 7e-09
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 23/106 (21%)
Query: 578 QDPIRVIPDVIGVFIQANVAFSRIVNFLE----------APELQSMNIRQKGNIENVNHV 627
++ + + + L+ A L+ QKG IE +V
Sbjct: 5 HHHHHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLR----FQKGRIE-FENV 59
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLL 673
FS+ + + T++++S V PGQ +A+ G G+GKST+L
Sbjct: 60 ------HFSYADG--RETLQDVSFTVMPGQTLALVGPSGAGKSTIL 97
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 1e-56
Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 10/232 (4%)
Query: 994 RYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK 1053
Y DS +L+ IS + I G +G GK+T+ L R +P G+I +DG I
Sbjct: 10 AY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDN 68
Query: 1054 LGLHDLRSRFGIIPQDPTLFNGTVRYNLD--PLSQHTDQEIWEVLAKCHLGEAVREKENG 1111
+ L + RS+ G + QD + GT+R NL +TD+++W+VL V +
Sbjct: 69 ISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQ 128
Query: 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFAD 1171
L++ V E G S GQRQ + RA LR +IL+LDEATAS+D+ ++ ++QK + +
Sbjct: 129 LNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKG 188
Query: 1172 CTVITVAHRIPTVMDCTMVLAISDGKLAE---YDEPMKLMKREGSLFGQLVR 1220
T + +AHR+ T++D + I G++ ++E L+ L+ + V
Sbjct: 189 RTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNE---LVATHP-LYAKYVS 236
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI 676
++S + F+++ S+ +R+IS E +P +A G G GKST+ + +
Sbjct: 1 MLSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL 48
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 3e-52
Identities = 69/242 (28%), Positives = 124/242 (51%), Gaps = 10/242 (4%)
Query: 984 GKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG 1041
++ D+ Y + + LK I+ G +VG TGSGK+T+ L+R + G
Sbjct: 16 VNIEFSDVNFSYPKQTNHR-TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEG 74
Query: 1042 GKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL---DPLSQHTDQEIWEVLAK 1098
I + G +++K + +RS GI+PQD LFN T++YN+ + TD+E+ +
Sbjct: 75 -DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA--TDEEVIKATKS 131
Query: 1099 CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158
L + + D++V G S G+RQ + R LL+ +I++ DEAT+S+D+ T+
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 1159 MILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218
+ QK + + T+I +AHR+ T+ ++ ++ GK+ E L+K G + ++
Sbjct: 192 YLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNG-EYAEM 250
Query: 1219 VR 1220
Sbjct: 251 WN 252
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 6e-10
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 614 NIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLL 673
+ + + I +FS+ + ++ T+++I+ + G A+ G GSGKST+
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 2e-50
Identities = 74/251 (29%), Positives = 125/251 (49%), Gaps = 18/251 (7%)
Query: 981 PVVGKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE 1038
+ G V D+ Y P+ VL+G++ T G +VG GSGK+T+ L L +
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 1039 PAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLD--PLSQHTDQEIWEV- 1095
P GGK+L+DG + + H L ++ + Q+P LF + R N+ T +EI V
Sbjct: 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVA 130
Query: 1096 -LAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
+ H + + G D+ V E G+ S GQRQ L RAL+R+ R+L+LD AT+++D
Sbjct: 131 MESGAH--DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
Query: 1155 NATDMILQKTI--RAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAE---YDEPMKLMK 1209
+ +Q+ + E+A TV+ + ++ +L + +G + E + + LM+
Sbjct: 189 AGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQ---LME 245
Query: 1210 REGSLFGQLVR 1220
R G + +V
Sbjct: 246 RGG-CYRSMVE 255
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 622 ENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL 677
N+ ++ + SF++ + ++ ++ + PG+ A+ G GSGKST+ A +
Sbjct: 11 LNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ 66
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-28
Identities = 55/275 (20%), Positives = 104/275 (37%), Gaps = 24/275 (8%)
Query: 952 ISVERLNQYM--HVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCT 1009
+ +E + + + ++N + + + P VLK I+
Sbjct: 5 VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINFK 60
Query: 1010 FEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQD 1069
E G + + G TG+GKT+L+ + +EP+ GKI G R Q+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQN 107
Query: 1070 PTLFNGTVRYNLDPLSQHTDQEI-WEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128
+ GT++ N+ + D+ V+ C L E + + + ++ E G S GQR
Sbjct: 108 SWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 165
Query: 1129 QLFCLGRALLRRSRILVLDEATASIDNAT-DMILQKTIRAEFADCTVITVAHRIPTVMDC 1187
L RA+ + + + +LD +D T I + + A+ T I V ++ +
Sbjct: 166 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA 225
Query: 1188 TMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222
+L + +G Y +L F +
Sbjct: 226 DKILILHEGSSYFYGTFSELQNLRPD-FSSKLMGC 259
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 7e-25
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 593 QANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLE 652
V + F E + ++ N N S SFS P +++I+ +
Sbjct: 2 TTEVVMENVTAFWEEGFGELFEKAKQNN-NNRKTSNGDDSLSFSNFSLLGTPVLKDINFK 60
Query: 653 VRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL---------QNSWL 693
+ GQ +A+ G G+GK++LL I+GE+ ++G I QNSW+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWI 110
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 8e-26
Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 24/242 (9%)
Query: 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043
+V + ++ + VLK I+ E G + + G TG+GKT+L+ + +EP+ GK
Sbjct: 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 64
Query: 1044 ILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPL--SQHTDQEIWEVLAKCHL 1101
I G R Q + GT++ N+ + + + V+ C L
Sbjct: 65 IKHSG-------------RISFCSQFSWIMPGTIKENI--IFGVSYDEYRYRSVIKACQL 109
Query: 1102 GEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT-DMI 1160
E + + + ++ E G S GQR L RA+ + + + +LD +D T I
Sbjct: 110 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 169
Query: 1161 LQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAE---YDEPMKLMKREGSLFGQ 1217
+ + A+ T I V ++ + +L + +G + E L + +
Sbjct: 170 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE---LQNLQPDFSSK 226
Query: 1218 LV 1219
L+
Sbjct: 227 LM 228
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 3e-22
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
Query: 625 NHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
+ +++ + WEE P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++
Sbjct: 4 TTEVVMENVTAFWEEGG-TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 685 GTIL---------QNSWL 693
G I Q SW+
Sbjct: 63 GKIKHSGRISFCSQFSWI 80
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 57/248 (22%), Positives = 110/248 (44%), Gaps = 21/248 (8%)
Query: 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGG 1042
+ + + + + P L GI+ + G + +VG+ G GK++L+ AL ++ G
Sbjct: 1 MNSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 1043 KILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPL--SQHTDQEIWEVLAKCH 1100
+ + G +PQ + N ++R N+ L Q + V+ C
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENI--LFGCQLEEPYYRSVIQACA 105
Query: 1101 LGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT-DM 1159
L + +G + + E G N S GQ+Q L RA+ + I + D+ +++D
Sbjct: 106 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
Query: 1160 ILQKTI--RAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQ 1217
I + I + + T I V H + + +++ +S GK++E +L+ R+G+ F +
Sbjct: 166 IFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGA-FAE 224
Query: 1218 LVREYWSH 1225
+R Y SH
Sbjct: 225 FLRTYASH 232
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 7e-23
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 10/77 (12%)
Query: 626 HVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
+ I++++A+F+W S PT+ I+ + G VA+ G+VG GKS+LL+A+L E+ +G
Sbjct: 2 NSITVRNATFTWARSD-PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 686 TIL---------QNSWL 693
+ Q +W+
Sbjct: 61 HVAIKGSVAYVPQQAWI 77
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 55/249 (22%), Positives = 105/249 (42%), Gaps = 35/249 (14%)
Query: 985 KVDICDLQIRYRPDSPL---VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG 1041
++++ ++ + +PL L+ +S G + + G TGSGK+TL+ + L+EP
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 1042 GKILVDGIDISKLGLHDLRSRFGIIPQDPT--LFNGTVRYNLD-----PLSQHTDQEIWE 1094
G +L DG +++R GI Q P F V D + + D++
Sbjct: 62 GDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERV---FDEVAFAVKNFYPDRDPV- 114
Query: 1095 VLAKCHLGEAVRE--KENGLDSLVVEDGS--NWSMGQRQLFCLGRALLRRSRILVLDEAT 1150
V++ + GLD +D S G+++ + ++ IL+LDE
Sbjct: 115 --------PLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 166
Query: 1151 ASID-NATDMILQ--KTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206
+D +L+ + + TVI ++H I TV++ V+ + GK M+
Sbjct: 167 VGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRME 224
Query: 1207 LMKREGSLF 1215
+++ F
Sbjct: 225 FLEKYDPRF 233
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 628 ISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
I + + S + + K + N+SL + G+ + + G GSGKSTLL + G + T G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 686 TIL 688
+L
Sbjct: 63 DVL 65
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 32/246 (13%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
+ + +L Y D LKGI+ + G I+G G GK+TL +++P+ G+IL
Sbjct: 8 LKVEELNYNY-SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 1046 VDGIDI--SKLGLHDLRSRFGIIPQDPT--LFNGTVR-------YNLDPLSQHTDQEIWE 1094
D I S+ G+ LR GI+ QDP LF+ +V N+ + + EI
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM----KLPEDEIR- 121
Query: 1095 VLAKCHLGEAVRE--KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATAS 1152
+ V K G++ L + S GQ++ + L+ ++L+LDE TA
Sbjct: 122 --------KRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAG 173
Query: 1153 ID-NATDMILQ--KTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208
+D I++ ++ E T+I H I V C V + +G++ P ++
Sbjct: 174 LDPMGVSEIMKLLVEMQKE-LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232
Query: 1209 KREGSL 1214
+ +
Sbjct: 233 AEKEVI 238
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 625 NHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
++++ ++ ++++ + ++ I++ ++ G+ AI G G GKSTL G + +
Sbjct: 5 DYILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS 62
Query: 685 GTIL 688
G IL
Sbjct: 63 GRIL 66
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 51/268 (19%), Positives = 100/268 (37%), Gaps = 21/268 (7%)
Query: 964 PSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTG 1023
S P ++ + + + +LK IS G K + G G
Sbjct: 2 SSHHHHHHSSGLVPRGSHML--IQLDQIGRMK--QGKTILKKISWQIAKGDKWILYGLNG 57
Query: 1024 SGKTTLIGALFRLVEPAGGKILVDGIDISKLG--LHDLRSRFGIIPQDPTL---FNGTVR 1078
+GKTTL+ L G + + G K+G +R G + V
Sbjct: 58 AGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVI 117
Query: 1079 YNLDPLSQHTDQ-EIWEVLAKCHLGEAVRE--KENGLDSLVVEDGSNWSMGQRQLFCLGR 1135
+ +S +++ + EA + K G+ + + S G++Q + R
Sbjct: 118 DVV--ISGAFKSIGVYQDIDDEIRNEA-HQLLKLVGMSAKAQQYIGYLSTGEKQRVMIAR 174
Query: 1136 ALLRRSRILVLDEATASID-NATDMILQ--KTIRAEFADCTVITVAHRIPTV-MDCTMVL 1191
AL+ + ++L+LDE A +D A + +L ++ + +I V H I + + + +L
Sbjct: 175 ALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKIL 234
Query: 1192 AISDGKLAEYDEPMKLMKRE--GSLFGQ 1217
+ DG+ + ++ E F +
Sbjct: 235 LLKDGQSIQQGAVEDILTSENMSRFFQK 262
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 8e-09
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
+I + + K ++ IS ++ G K + G G+GK+TLL + P T GT
Sbjct: 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT 77
Query: 687 I 687
+
Sbjct: 78 V 78
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 5e-23
Identities = 43/207 (20%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VL+ I+ T E G+ + G G GKTTL+ + ++P G+I+ +G+ I+K ++
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKG 78
Query: 1062 RFGIIPQDPTLFNG-TVRYNLDPLSQ-----HTDQEIWEVLAKCHLGEAVREKENGLDSL 1115
+ +P++ + +V L ++ EI + L + + + L L
Sbjct: 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV----LDLKKKLGEL 134
Query: 1116 VVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID-NATDMILQKTIRAEFAD--C 1172
S G + L LL + I VLD+ +ID ++ +L K+I +
Sbjct: 135 --------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGI 185
Query: 1173 TVITVAHRIPTVMD-CTMVLAISDGKL 1198
+I+ + C + +
Sbjct: 186 VIISSRE----ELSYCDVNENLHKYST 208
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 6e-21
Identities = 52/237 (21%), Positives = 103/237 (43%), Gaps = 31/237 (13%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
+LKGIS E G G++G G+GKTT + + L++P+ G + V G ++ + H++R
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 1062 RFGIIPQDPTLFNG-TVRYNLD--------PLSQHTDQEIWEVLAKCHLGEAVREKENGL 1112
+P++ + L S ++ + LGE +
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASS-SSEIEEMVERATEIAGLGEK-------I 140
Query: 1113 DSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFAD- 1171
V S +S G + + RAL+ R+ +LDE T+ +D ++K ++ + +
Sbjct: 141 KDRV----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK-QASQE 195
Query: 1172 -CTVITVAHRIPTV-MDCTMVLAISDGKLAEYDEPMKLMKREGS-----LFGQLVRE 1221
T++ +H + V C + I +G + E +L +R + +F ++V+
Sbjct: 196 GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKC 252
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 42/231 (18%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
+ + +L Y+ + + + ++ G + ++G+ G GK+TL+ L + P GKI
Sbjct: 5 LSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 1046 VDGIDISKLGLHDLRSRFGIIPQDPTL-FNGTV-------RY----NLDPLSQHTDQEIW 1093
V G +PQ + F +V R H Q
Sbjct: 64 VYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110
Query: 1094 EVLAKCHLGE-AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATAS 1152
+ L +L A RE SL S GQRQL + RA+ ++++LDE T++
Sbjct: 111 QALDYLNLTHLAKRE----FTSL--------SGGQRQLILIARAIASECKLILLDEPTSA 158
Query: 1153 IDNATDMILQKTIR--AEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200
+D A I+ + A+ + TV+ H+ V+ L ++
Sbjct: 159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 625 NHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
N +S+++ F ++ + + ++ ++ G +A+ G+ G GKSTLL +LG Q
Sbjct: 2 NKALSVENLGFYYQ--AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 685 GTI 687
G I
Sbjct: 60 GKI 62
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 2e-19
Identities = 42/220 (19%), Positives = 72/220 (32%), Gaps = 34/220 (15%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L +S G + +VG G+GK+TL+ + + G I G + L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 1062 RFGIIPQDPTL-FNGTVR----YNLDPLSQHTDQEI-WEVLAKCHLGE-AVREKENGLDS 1114
+ Q T F V + T E+ +V L + R +
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHD---KTRTELLNDVAGALALDDKLGRS----TNQ 126
Query: 1115 LVVEDGSNWSMGQRQLFCLGRALL-------RRSRILVLDEATASIDNATDMILQKTIRA 1167
L S G+ Q L +L ++L+LDE S+D A L K +
Sbjct: 127 L--------SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILS- 177
Query: 1168 EFAD--CTVITVAHRIP-TVMDCTMVLAISDGKLAEYDEP 1204
+ ++ +H + T+ + GK+
Sbjct: 178 ALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 217
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+ + +S EVR G+ + + G G+GKSTLLA + G +G+I
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQ 57
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 9e-19
Identities = 44/232 (18%), Positives = 75/232 (32%), Gaps = 32/232 (13%)
Query: 968 PEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKT 1027
+ + VL F + ++G G+GKT
Sbjct: 333 ALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKT 392
Query: 1028 TLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPT--LFNGTVRYNLDPLS 1085
TLI L ++P G+ I KL + + LF +R
Sbjct: 393 TLIKLLAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFL--- 443
Query: 1086 QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV 1145
Q +V+ + + + ++E + L S G+ Q + AL + I +
Sbjct: 444 --NPQFQTDVVKPLRI-DDIIDQE--VQHL--------SGGELQRVAIVLALGIPADIYL 490
Query: 1146 LDEATASIDNATDMILQKTIR--AEFADCTVITVAHRIPTVMDCTMVLAISD 1195
+DE +A +D+ +I K IR T V H D M ++D
Sbjct: 491 IDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH------DFIMATYLAD 536
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-13
Identities = 42/216 (19%), Positives = 81/216 (37%), Gaps = 38/216 (17%)
Query: 994 RYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGID--- 1050
RY +S T G +G+VG G GK+T + L +P G+
Sbjct: 86 RYSANS--FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEI 143
Query: 1051 ISKLGLHDLRSRF--------GIIPQDPTLFN------GTVRYNLDPLSQHTD---QEIW 1093
I +L++ F I + + N G V+ + L + +++
Sbjct: 144 IKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVK 203
Query: 1094 EVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI 1153
+ L E V +++ ++ L S G+ Q F +G + ++ + + + DE ++ +
Sbjct: 204 RYIKILQL-ENVLKRD--IEKL--------SGGELQRFAIGMSCVQEADVYMFDEPSSYL 252
Query: 1154 DNATDMILQKTIR---AEFADCTVITVAHRIPTVMD 1186
D + + IR A VI V H + +
Sbjct: 253 DVKQRLNAAQIIRSLLAP--TKYVICVEHDLSVLDY 286
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
+ + +S K + RPGQ + + G G GKST L + G+ G
Sbjct: 77 TNLEAHVTHRYSANSFK---LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 687 ILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLF 721
++ S L+ +L + +
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690
+ E + + + GE G+GK+TL+ + G + +G +
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPK 412
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 2e-18
Identities = 42/201 (20%), Positives = 74/201 (36%), Gaps = 36/201 (17%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L + + G IGI+G G GKTT L + G + + +S +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY------KP 336
Query: 1062 RFGIIPQDPTLFNGTVRYNL-----DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLV 1116
+ I + +GTV+ L D LS EV + +L + E ++ L
Sbjct: 337 Q--RIFPNY---DGTVQQYLENASKDALSTS-SWFFEEVTKRLNL-HRLLESN--VNDL- 386
Query: 1117 VEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR--AEFADCTV 1174
S G+ Q + L + + + VLD+ ++ +D I+ K I+
Sbjct: 387 -------SGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439
Query: 1175 ITVAHRIPTVMDCTMVLAISD 1195
+ H D ++ I+D
Sbjct: 440 FIIDH------DLSIHDYIAD 454
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 8e-13
Identities = 46/227 (20%), Positives = 87/227 (38%), Gaps = 13/227 (5%)
Query: 994 RYRPDSPLVLKGISC-TFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS 1052
RY+ + K T + +G++G+ G GKTT++ L + P G +
Sbjct: 8 RYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGK 62
Query: 1053 KLGLHDLR-SRFGIIPQDP-TLFNGTVR--YNLDPLSQHTDQEIWEVLAKCHLGEAVRE- 1107
L R ++ + V ++ S+ + E+L K E
Sbjct: 63 DEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEV 122
Query: 1108 -KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR 1166
+ + +L +D + S G Q + +LLR + + + D+ ++ +D M + K IR
Sbjct: 123 KELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIR 182
Query: 1167 AEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEP-MKLMKREG 1212
+ VI V H + + T ++ I G+ + Y R G
Sbjct: 183 ELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVG 229
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 647 RNISLEV-RPGQKVAICGEVGSGKSTLLAAILGE-VPHTQGTILQNSW 692
+ L + + + G+ G GK+T+L + GE +P+ +
Sbjct: 15 KLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGK 62
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 11/116 (9%)
Query: 585 PDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKG-NIENVNHVISIKSASFSWEESSSK 643
V G ++ A I NFL+ L + N++ + I+ + +S S +
Sbjct: 214 SSVYGRVSKSYAARVGINNFLKG-YLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKW 272
Query: 644 PTMR---------NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690
+ + E + G+ + I G G GK+T ++GE+ +G++
Sbjct: 273 TKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPE 328
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 1e-17
Identities = 52/223 (23%), Positives = 89/223 (39%), Gaps = 38/223 (17%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L+ I+ G K+ I+G GSGKTTL+ A+ L+ P G I ++G+++ K+ R+
Sbjct: 20 SLENINLEVNG-EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-----RN 72
Query: 1062 RFGIIPQDPTLF--NGTVRYN--LDPLSQHTDQE-IWEVLAKCHLGEAVREKENGLDSLV 1116
P + TV L + D++ E+L LGE + ++ L L
Sbjct: 73 YIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRK--LYKL- 129
Query: 1117 VEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVIT 1176
S GQ L AL + I+ LDE ++D A ++ + I+ I
Sbjct: 130 -------SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGIL 180
Query: 1177 VAHRIPTVMDCTMVLAISD--------GKLAEYDEPMKLMKRE 1211
V H + M+ + +L +L++
Sbjct: 181 VTH------ELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 627 VISIKSASFSWEESSS-KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
+I +K+ + + ++ NI+LEV G+KV I G GSGK+TLL AI G +P G
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLP-YSG 58
Query: 686 TIL 688
I
Sbjct: 59 NIF 61
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 1e-17
Identities = 51/212 (24%), Positives = 80/212 (37%), Gaps = 42/212 (19%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L+ + G IGIVG G GKTT + L + EP GKI D
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL------------- 347
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWE--VLAKCHLGEAVRE--KENGLDSLVV 1117
+ + + D + T E+ +K + E K G+ L
Sbjct: 348 --TVAYKPQYIK-------ADY--EGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYD 396
Query: 1118 EDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR--AEFADCTVI 1175
+ + S G+ Q + LLR + I +LDE +A +D + + + IR E + T +
Sbjct: 397 REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
Query: 1176 TVAHRIPTVMDCTMVLAISD------GKLAEY 1201
V H D M+ +SD G+ +Y
Sbjct: 457 VVEH------DVLMIDYVSDRLMVFEGEPGKY 482
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 8e-13
Identities = 40/214 (18%), Positives = 79/214 (36%), Gaps = 33/214 (15%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP------AGGK 1043
D RY ++ + + G +GIVG G+GK+T + L + P
Sbjct: 26 DCVHRYGVNA--FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 1044 ILVDGIDISKLGLHDLRSR---FGIIPQ------DPTLFNGTVRYNLDPLSQHTDQEIWE 1094
++ ++L + + + + + P G V L + E
Sbjct: 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK---ADETGKLE 140
Query: 1095 VLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
E V+ E L++++ + + S G+ Q + ALLR + DE ++ +D
Sbjct: 141 --------EVVKALE--LENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLD 190
Query: 1155 NATDMILQKTIR--AEFADCTVITVAHRIPTVMD 1186
+ + IR +E +V+ V H + +
Sbjct: 191 IRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLDY 223
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 8/111 (7%)
Query: 585 PDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQ-------KGNIENVNHVISIKSASFSW 637
P V G+F Q + I FL L+ N+R E V
Sbjct: 235 PGVYGIFSQPKGTRNGINEFLRG-YLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRL 293
Query: 638 EESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+ + E++ G+ + I G G GK+T + + G T+G I
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE 344
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP 681
V+ G V I G G+GKST + + G++
Sbjct: 39 YRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLI 72
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 9e-17
Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 29/232 (12%)
Query: 986 VDICDLQIRYRPDSPLV--LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043
+ + ++ + + + L +S G G++G +G+GK+TLI + L P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 1044 ILVDGIDISKL---GLHDLRSRFGIIPQDPTLFNG-TVRYNLD-PLSQHTDQEIWEVLAK 1098
+LVDG +++ L L R + G+I Q L + TV N+ PL E+
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPL------ELDNTPK- 137
Query: 1099 CHLGEAVREKENGLDSLV-VEDG-----SNWSMGQRQLFCLGRALLRRSRILVLDEATAS 1152
+ V+ + L SLV + D SN S GQ+Q + RAL ++L+ D+AT++
Sbjct: 138 ----DEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 1153 ID-NATDMILQ--KTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200
+D T IL+ K I T++ + H + V C V IS+G+L E
Sbjct: 194 LDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAVISNGELIE 244
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 1e-16
Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 40/202 (19%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L+ G IGIVG G GKTT + L + EP GK+ D
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL------------- 417
Query: 1062 RFGIIPQDPTL---FNGTVR---YNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSL 1115
+ + + + GTV +D +++ E+L + + + ++ ++ L
Sbjct: 418 --TVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIID-LYDRN--VEDL 472
Query: 1116 VVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR--AEFADCT 1173
S G+ Q + LLR + I +LDE +A +D + + + IR E + T
Sbjct: 473 --------SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 524
Query: 1174 VITVAHRIPTVMDCTMVLAISD 1195
+ V H D M+ +SD
Sbjct: 525 ALVVEH------DVLMIDYVSD 540
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-14
Identities = 41/213 (19%), Positives = 83/213 (38%), Gaps = 31/213 (14%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK------ 1043
D RY ++ + + G +GIVG G+GKTT + L + P +
Sbjct: 96 DCVHRYGVNA--FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 153
Query: 1044 ILVDGIDISKLGLHDLRSR---FGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCH 1100
++ ++L + R + + + +D L + ++ E+L K
Sbjct: 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQ---------YVDLLPKAVKGKVRELLKKV- 203
Query: 1101 LGEAVREKENGLDSLVVEDGSNWSM-----GQRQLFCLGRALLRRSRILVLDEATASIDN 1155
+ V + E + L +E+ + + G+ Q + ALLR++ DE ++ +D
Sbjct: 204 --DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDI 261
Query: 1156 ATDMILQKTIRAEFA--DCTVITVAHRIPTVMD 1186
+ + + IR A V+ V H + +
Sbjct: 262 RQRLKVARVIR-RLANEGKAVLVVEHDLAVLDY 293
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 11/127 (8%)
Query: 574 LRLVQDPIRVI---PDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKG---NIENVNHV 627
L + D I V+ P V G+F + + I FL+ L+ N+R + ++
Sbjct: 291 LDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQ-GYLKDENVRFRPYEIRFTKLSER 349
Query: 628 ISIKSASFSWEESSSKP----TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT 683
+ ++ + K + E+R G+ + I G G GK+T + + G T
Sbjct: 350 VDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 409
Query: 684 QGTILQN 690
+G + +
Sbjct: 410 EGKVEWD 416
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 8e-06
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
V+ G V I G G+GK+T + + G++
Sbjct: 109 YRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLC 146
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.5 bits (195), Expect = 5e-15
Identities = 118/703 (16%), Positives = 216/703 (30%), Gaps = 168/703 (23%)
Query: 470 LAKLQHKFQTKLMVAQDERLK--ACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLS 527
+ Q++++ L V +D + C + K IL E +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK---------------SILSKEEIDHII 55
Query: 528 AVQLRKAYNTFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDV 587
+ + LFW+ L+ ++
Sbjct: 56 MSKDAVSGTLRLFWT---------------------------------LLSKQEEMVQKF 82
Query: 588 IGVFIQANVAF--SRIVNFLEAPELQSMN-IRQKGNIENVNHVISIKSASFSWEESSSKP 644
+ ++ N F S I P + + I Q+ + N N V + + S +P
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS------RLQP 136
Query: 645 --TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNS----WLAANVE 698
+R LE+RP + V I G +GSGK+ + +V + + WL N++
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVAL----DVCLSYKVQCKMDFKIFWL--NLK 190
Query: 699 NPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDS 758
N N L ++ L+ + S S I+ L L ++ Y++
Sbjct: 191 NCNSPETVLEMLQKLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--YEN 245
Query: 759 TPLGRVLSRVSSDLSIVDLDVPFSLIFAVGA----TTNAYSNLGVLAVVTWQVLFVSIPV 814
L VL V + + F + TT L+ T + +
Sbjct: 246 CLL--VLLNV-QNAKAWNA-------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 815 IFLAIRLQRYYFATAKELMRLNGTTKSL----VANH-LAESIAGAMTIRAFEEEDRFFAK 869
+ L + L+ + L + + SI IR + +
Sbjct: 296 MTLTPDEVKSLLLKY-----LDCRPQDLPREVLTTNPRRLSIIAES-IR--DGLATW--D 345
Query: 870 NLDLIDTNASPFFQTFAANEWLIQR-LETLSATVISSAAFCMVLLPPGTFTPGFIGMALS 928
N ++ + T +I+ L L + + PP P + LS
Sbjct: 346 NWKHVNCDK---LTT------IIESSLNVLEPAEYRKMFDRLSVFPPSAHIP---TILLS 393
Query: 929 -YGLSLNSSLVMSIQNQC---TLAN-----YIISVERLNQYMHVPSEAPEVVEDNRPPPN 979
+ S VM + N+ +L IS+ + Y+ + + +R
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YLELKVKLENEYALHR---- 447
Query: 980 WPVVGKVDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGAL---F 1034
+V +I + D P L + G H + + TL + F
Sbjct: 448 -SIVDHYNIPK---TFDSDDLIPPYLDQYFYSHIGHH---LKNIEHPERMTLFRMVFLDF 500
Query: 1035 RLVEPAGGKILVDGIDISKLG-----LHDLR--SRFGIIPQDPTLFNGTVRYNLDPLSQH 1087
R +E KI D + G L L+ + I DP + V LD L +
Sbjct: 501 RFLE---QKIRHDSTAWNASGSILNTLQQLKFYKPY-ICDNDPK-YERLVNAILDFLPKI 555
Query: 1088 TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130
E L + +R +L+ ED + + +Q+
Sbjct: 556 E-----ENLICSKYTDLLRI------ALMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 4e-08
Identities = 89/588 (15%), Positives = 167/588 (28%), Gaps = 180/588 (30%)
Query: 53 LFNMIQKSSSKSLYIPVRFQRFTTLQKVAAVVNSCLGIAYLC--LG---TWILEEKLR-- 105
L+N Q + ++ R Q + L++ + + + LG TW+ +
Sbjct: 119 LYNDNQVFAKYNVS---RLQPYLKLRQALLELRPAKNVL-IDGVLGSGKTWVALDVCLSY 174
Query: 106 KTHTALPLN-WWLLVLFQGVTWLLVSLIVSL----------RGNHLPRAPMRLLSV---L 151
K + +WL + ++ ++ L R +H +R+ S+ L
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 152 SFLFAGTV---CVLSIFAAILSKDVTIKTAVDVLSFPGAILLLLCAYKVFKHEETDVKIG 208
L C+L +L +V A + + +LL +K + TD
Sbjct: 235 RRLLKSKPYENCLL-----VLL-NVQNAKAWNAFNL-SCKILLTTRFK----QVTDFLSA 283
Query: 209 ENGLYAPLNGEANGLGKDHSAGHITGFAAAGFFSRLTFWWLNPLMKRGREKTLGDEDIPD 268
+ L+ + L D + +L+ +D+P
Sbjct: 284 ATTTHISLDHHSMTLTPDEV---------KSLLLK----YLD----------CRPQDLP- 319
Query: 269 LRKAEQAESCYFQFLDQLNKQKQAEPSSQPSVLRTIIICYWRDIFMSGFFALLKVLTLSA 328
+ + + L + + + + W+ + L ++ S
Sbjct: 320 ----REVLTTNPRRLSIIAESIRDGLA---------TWDNWKHVNCD---KLTTIIESS- 362
Query: 329 GPLLLNAFILVTEGKAGFKYEGYVLAITLFV--AKILESLSQRQW----YFRSRLI--GL 380
LN + E + F L++ F A I L W ++ L
Sbjct: 363 ----LNV-LEPAEYRKMFDR----LSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 381 KVRSLL-------TAAIYKKQLRL----SNAARLMHSGGEIMN-YVTVDAYRIGEFP--- 425
SL+ T +I L L N L H I++ Y + +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HR--SIVDHYNIPKTFDSDDLIPPY 468
Query: 426 ----FWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKF---- 477
F+ H I H L N + F
Sbjct: 469 LDQYFYSH--------------IGHH-----------------LKNIEHPERMTLFRMVF 497
Query: 478 ------QTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRN-VEYKWLSAVQ 530
+ K+ A L ++ LK Y + + I N +Y+ +
Sbjct: 498 LDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFY--KPY------ICDNDPKYE-----R 543
Query: 531 LRKAYNTFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQ 578
L A FL L+ + L + L A + F + VQ
Sbjct: 544 LVNAILDFLPKIEENLICSKY---TDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 6e-07
Identities = 74/537 (13%), Positives = 143/537 (26%), Gaps = 203/537 (37%)
Query: 161 VLSIFAAILSKDVTIKTAVDVLSFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEA 220
+LS+F + K DV P + + EE D
Sbjct: 21 ILSVFEDAFVDNFDCK---DVQDMPKS---------ILSKEEID---------------- 52
Query: 221 NGLGKDHSAGHITGFAAAGFFSRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYF 280
HI A + FW L + +K + + + +
Sbjct: 53 ----------HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-----------Y 91
Query: 281 QFLDQLNKQKQAEPSSQPSVLRTIIICY----WRD--IFMSGFFALLK-VLTLSAGPLLL 333
+FL QPS++ + I + D +F + L+ L L L L
Sbjct: 92 KFL----MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 334 --NAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIY 391
+L+ +G G G K + + +
Sbjct: 148 RPAKNVLI-DGVLGS--------------------------------G-K--TWVALDV- 170
Query: 392 KKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGL 451
+ +I FW + +
Sbjct: 171 -----CLSYKVQCKMDFKI---------------FWLN-------------------LKN 191
Query: 452 ATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHF 511
V+ M+ L ++ + ++ + + +L+ S + ++ +L + +
Sbjct: 192 CNSPETVLEMLQKLLY----QIDPNWTSRSDHSSNIKLRIHS---IQAELRRLLKSKPY- 243
Query: 512 KNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPVLVSTATFGACYFLNVPLY-------A 564
+N + +L NV+ +N F S +L++T FL+
Sbjct: 244 ENCLLVLLNVQNAKA--------WNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 565 SNVFTFVATLRL--------VQD-P---IRVIP---DVIGVFIQANVA------------ 597
S T L QD P + P +I I+ +A
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 598 FSRI----VNFLEAPELQ----SMNIRQKGNIENVNHVISIKSASFSWEESSSKPTM 646
+ I +N LE E + +++ + + I S W + M
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFP----PSAH--IPTILLSLIWFDVIKSDVM 405
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 3e-12
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 22/171 (12%)
Query: 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILV 1046
++ L + Y + +KGI G + ++G G+GKTT + A+ LV GKI+
Sbjct: 8 EVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 1047 DGIDISKLGLHDLRSRFGII--PQDPTLFNG-TVRYNLD------PLSQHTDQEIWEVLA 1097
+G DI+ H +R GI P+ +F TV NL + +++ +
Sbjct: 66 NGQDITNKPAHV-INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF- 123
Query: 1098 KCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDE 1148
L ++E+ L G S G++Q+ +GRAL+ R ++L++DE
Sbjct: 124 --SLFPRLKERLKQL-------GGTLSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 3e-07
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+ I L+V GQ V + G G+GK+T L+AI G V +G I+
Sbjct: 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 2e-11
Identities = 51/237 (21%), Positives = 93/237 (39%), Gaps = 39/237 (16%)
Query: 997 PDSPLVLKGISCTFEG-------------GHKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043
L + I F G I+G GSGK+TLI + ++ G+
Sbjct: 4 TMEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR 63
Query: 1044 ILVDGIDISKLGLHDLRSRFGIIP--QDPTLFNG-TVRYN-LDPLSQHTDQEIWEVLAKC 1099
+ + DI+ +L +GI+ Q P TV N L + + + K
Sbjct: 64 VYFENKDITNKEPAEL-YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKK 122
Query: 1100 HLGE--AVREKEN------GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATA 1151
+ + + EK L L S GQ +L +GRAL+ +++V+DE A
Sbjct: 123 WIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIA 182
Query: 1152 SIDNAT------DMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDG-KLAE 1200
+ + +L+ ++A+ T + + HR+ V++ + + +G +AE
Sbjct: 183 GV-APGLAHDIFNHVLE--LKAK--GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 3e-11
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 38/227 (16%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTL---IGALFRLVEPAGGKILVDGIDISKLG--- 1055
LK ++ + G + I+G +GSGK+T+ IG L + P G++ +D I + L
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDE 76
Query: 1056 LHDLRSR-FGIIPQDPTLFNGTVRYNLDPLSQHTDQE------IWEVLAKCHLGEAVREK 1108
L +R G + Q ++NL + T E I++ E +
Sbjct: 77 LTKIRRDKIGFVFQ---------QFNL--IPLLTALENVELPLIFKYRGAMSGEERRKRA 125
Query: 1109 ENGLDSLVVEDG------SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD---M 1159
L +E+ + S GQ+Q + RAL I++ D+ T ++D+ T M
Sbjct: 126 LECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIM 185
Query: 1160 ILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMK 1206
L K + E TV+ V H I ++ + DG++ +E ++
Sbjct: 186 QLLKKLNEEDGK-TVVVVTHDINVARFGERIIYLKDGEVER-EEKLR 230
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 12/61 (19%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTILQNSWLAANVENPNVST 704
+N++L ++ G+ V+I G GSGKST+L I+G + P T+G + ++N +
Sbjct: 22 KNVNLNIKEGEFVSIMGPSGSGKSTML-NIIGCLDKP-TEGEVY--------IDNIKTND 71
Query: 705 L 705
L
Sbjct: 72 L 72
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 4e-11
Identities = 51/264 (19%), Positives = 92/264 (34%), Gaps = 42/264 (15%)
Query: 947 LANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGI 1006
+ ++ + + A + + + G+ D+C+ + + ++L
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGE-DLCNCEFSLAYGAKILLNKT 454
Query: 1007 SCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGII 1066
+ + GI G G GK+TL+ A+ A G+ VDG + R +
Sbjct: 455 QLRLKRARRYGICGPNGCGKSTLMRAI------ANGQ--VDGFPTQE------ECRTVYV 500
Query: 1067 PQDPTLFNG--TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124
D + +V + T + I + L G + +L S
Sbjct: 501 EHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLI--EFGFTDEMIAMPISAL--------S 550
Query: 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTV 1184
G + L RA+LR + IL+LDE T +D L + T IT++H
Sbjct: 551 GGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH----- 603
Query: 1185 MD-------CTMVLAISDGKLAEY 1201
D C ++ KL +Y
Sbjct: 604 -DSVFLDNVCEYIINYEGLKLRKY 626
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 4e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE 679
K + L ++ ++ ICG G GKSTL+ AI
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG 484
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 7e-06
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 640 SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNS 691
+SKP + +I+ + ++A+ G G+GKSTL+ + GE+ T G + +
Sbjct: 683 GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 3e-05
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
+++ +Y S + I+ +I ++G G+GK+TLI L + P G++
Sbjct: 676 NMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 9e-04
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 1124 SMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPT 1183
S GQ+ L +R ++VLDE T +D + L K ++ EF + VI + H
Sbjct: 903 SGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK-EF-EGGVIIITH---- 956
Query: 1184 VMD-------CTMVLAISDGKLAEYD 1202
V A+ DG++
Sbjct: 957 --SAEFTKNLTEEVWAVKDGRMTPSG 980
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 22/164 (13%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS--KLGLHDL 1059
VLKGI+ G + ++G +GSGK+T + L L + G+I++DGI++ L+ +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1060 RSRFGIIPQDPTLF-NGTVRYN--LDP-----LSQHTDQEI-WEVLAKCHLGEAVREKEN 1110
R G++ Q LF + TV N L P + + E+L K L + +
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
L S GQ Q + RAL +I++ DE T+++D
Sbjct: 159 SL-----------SGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+ I++ +R G+ V + G GSGKST L + +G I+
Sbjct: 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 82
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 1e-10
Identities = 54/217 (24%), Positives = 89/217 (41%), Gaps = 34/217 (15%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTL---IGALFRLVEPAGGKILVDGIDISKLG--- 1055
+LKGIS + + G + I+G +GSGK+TL +G L P GK+ ++G ++
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEKE 75
Query: 1056 LHDLRSR-FGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWE---VLAKCHLGEAVREKENG 1111
L LR+R G + Q + L + + T E + EA E
Sbjct: 76 LSLLRNRKLGFVFQ---------FHYL--IPELTALENVIVPMLKMGKPKKEAKERGEYL 124
Query: 1112 LDSLVVEDGSN-----WSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT-DMILQ--K 1163
L L + D + S G++Q + RAL +L DE T ++D+A ++
Sbjct: 125 LSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184
Query: 1164 TIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAE 1200
I +++ V H L + DGK+
Sbjct: 185 KINEG--GTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILG 678
+ ISL V+ G+ V+I G GSGKSTLL ILG
Sbjct: 21 KGISLSVKKGEFVSIIGASGSGKSTLL-YILG 51
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VLKG+S G I I+G +GSGK+T + + L +P+ G I+V+G +I+ + D +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 1062 R 1062
+
Sbjct: 81 K 81
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 5e-06
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAI-LGEVPHTQGTIL 688
+ +SL+ R G ++I G GSGKST L I E P ++G I+
Sbjct: 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-SEGAII 64
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 6e-08
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 19/137 (13%)
Query: 1018 IVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLF-NGT 1076
++G TG+GK+ + + +V+P G++ ++G DI+ L R G +PQD LF + +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 1077 VRYNLD-PLSQHTDQEIW----EVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131
V N+ L E E+ K + + K L S G+RQ
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARL-----------SGGERQRV 135
Query: 1132 CLGRALLRRSRILVLDE 1148
L RAL+ + R+L+LDE
Sbjct: 136 ALARALVIQPRLLLLDE 152
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-06
Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 25/174 (14%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
+ I L + + VL IS + + G + I+G +G GKTTL+ L +P G+I
Sbjct: 5 LHIGHLSKSF--QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62
Query: 1046 VDGIDISKLGLH---DLRSRFGIIPQDPTLF-NGTVRYN------LDPLS-QHTDQEIWE 1094
+ G I + R R G + Q+ LF + TV N Q I
Sbjct: 63 LSGKTIFSKNTNLPVRER-RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEA 121
Query: 1095 VLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDE 1148
+L + E + L S GQ+Q L RAL +++LDE
Sbjct: 122 MLELTGISELAGRYPHEL-----------SGGQQQRAALARALAPDPELILLDE 164
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 8e-06
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 618 KGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL 677
G + +H++SIK S E+ K +R +SL+V PG+ AI G GSGKSTL A +
Sbjct: 11 SGLVPRGSHMLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLA 67
Query: 678 G----EVPHTQGTIL 688
G EV T GT+
Sbjct: 68 GREDYEV--TGGTVE 80
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 22/171 (12%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
++ ++ Y P ++G+S G +G++G +GSGKTT++ + L P G +
Sbjct: 15 IEFVGVEKIY-PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 1046 VDGIDISKLGLHDLRSRFGIIPQDPTLF-NGTVRYNL-------DPLSQHTDQEIWEVLA 1097
+ G ++ L R G++ Q+ LF + TV N+ D + E+L
Sbjct: 74 IGGKRVTDLPPQK-R-NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLR 131
Query: 1098 KCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDE 1148
L + L S GQ+Q L RAL R ++L+ DE
Sbjct: 132 FMRLESYANRFPHEL-----------SGGQQQRVALARALAPRPQVLLFDE 171
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG----EVPHTQGTIL 688
+ ++ ++L V G+ A+ G G+GKSTL + G V +G IL
Sbjct: 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV--ERGEIL 63
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 28/158 (17%)
Query: 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV----EPAGGKILVDGIDISKLGL 1056
L +S E G I+G TG+GKT + L+ P G+IL+DG D++ L
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFL----ELIAGFHVPDSGRILLDGKDVTDLSP 69
Query: 1057 HDLRSR-FGIIPQDPTLF-NGTVRYNLD-PLSQH---TDQEIWEVLAKCHLGEAVREKEN 1110
+ Q+ +LF + V+ NL+ + + + + + +
Sbjct: 70 EK---HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL 126
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDE 1148
L S G++Q L RAL+ +IL+LDE
Sbjct: 127 TL-----------SGGEQQRVALARALVTNPKILLLDE 153
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 51/262 (19%), Positives = 99/262 (37%), Gaps = 59/262 (22%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
++ + ++ ++ + L ++ E G + GI+G +G+GKTT + + L P+ G++
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1045 LVDGIDISKLGLHDLRSR-------FGIIPQDPTLF-NGTVRYNLD-PL------SQHTD 1089
D ++ G + F Q L+ N T N+ PL +
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVF----QTWALYPNLTAFENIAFPLTNMKMSKEEIR 118
Query: 1090 QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEA 1149
+ + EV + + L S Q+Q L RAL++ +L+LDE
Sbjct: 119 KRVEEVAKILDIHHVLNHFPREL-----------SGAQQQRVALARALVKDPSLLLLDEP 167
Query: 1150 TASIDNATDMILQKTIRAEFA------DCTVI----------TVAHRIPTVMDCTMVLAI 1193
+++D ++ + RA T++ +A R+ V+
Sbjct: 168 FSNLDAR----MRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRV-GVLV------- 215
Query: 1194 SDGKLAEYDEPMKLMKREGSLF 1215
GKL + +P L S+
Sbjct: 216 -KGKLVQVGKPEDLYDNPVSIQ 236
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1232 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-69 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-15 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 8e-65 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 7e-15 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-61 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-14 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-60 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-14 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-57 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-15 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-54 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 8e-15 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-31 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-09 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-30 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-08 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-30 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-08 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-29 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-09 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-29 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-08 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-27 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-09 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-10 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-24 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-08 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-24 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-09 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-23 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 5e-09 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-23 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-08 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-22 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 9e-09 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-22 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-09 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-19 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-06 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 8e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-05 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-09 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 2e-07 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 0.001 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.002 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.002 | |
| d1xjca_ | 165 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.003 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 230 bits (588), Expect = 3e-69
Identities = 73/245 (29%), Positives = 125/245 (51%), Gaps = 2/245 (0%)
Query: 977 PPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL 1036
P G++DI + +Y + +LK I+ + E G + VG +G GK+TLI + R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 67
Query: 1037 VEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL-DPLSQHTDQEIWEV 1095
+ G+IL+DG +I LR++ G++ QD LF+ TV+ N+ TD+E+ E
Sbjct: 68 YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEA 127
Query: 1096 LAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDN 1155
+ + + G D+ V E G S GQ+Q + R L IL+LDEAT+++D
Sbjct: 128 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 187
Query: 1156 ATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLF 1215
++ I+Q+ + D T + VAHR+ T+ ++ I +G + E +L+ ++G +
Sbjct: 188 ESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQG-AY 246
Query: 1216 GQLVR 1220
L
Sbjct: 247 EHLYS 251
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 74.4 bits (183), Expect = 4e-15
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 621 IENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV 680
IE I I SF + ++ P +++I+L + G+ VA G G GKSTL+ I
Sbjct: 10 IEIKQGRIDIDHVSFQYNDNE-APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 681 PHTQGTILQNSWLAANVENPNVSTLRLIVVYLLIGFVSTLFLMS 724
T G IL + N+++ +LR + + + LF +
Sbjct: 69 DVTSGQILIDG---HNIKDFLTGSLRNQIGL--VQQDNILFSDT 107
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 218 bits (556), Expect = 8e-65
Identities = 70/239 (29%), Positives = 129/239 (53%), Gaps = 3/239 (1%)
Query: 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043
G ++ ++ Y L+ I+ G + +VGR+GSGK+T+ + R + G
Sbjct: 12 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 1044 ILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYN--LDPLSQHTDQEIWEVLAKCHL 1101
IL+DG D+ + L LR++ ++ Q+ LFN TV N +++ ++I E +
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131
Query: 1102 GEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMIL 1161
+ + + +NGLD+++ E+G S GQRQ + RALLR S IL+LDEAT+++D ++ +
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 1162 QKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVR 1220
Q + + T + +AHR+ T+ ++ + DG + E +L+ + G ++ QL +
Sbjct: 192 QAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG-VYAQLHK 249
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 73.7 bits (181), Expect = 7e-15
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 621 IENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV 680
I+ + ++ +F++ P +RNI+L++ G+ VA+ G GSGKST+ + I
Sbjct: 7 IDRATGDLEFRNVTFTYP-GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 65
Query: 681 PHTQGTILQNSWLAANVENPNVSTLRLIVVY 711
+G IL + ++ +++LR V
Sbjct: 66 DIDEGHILMDGH---DLREYTLASLRNQVAL 93
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 208 bits (530), Expect = 1e-61
Identities = 71/236 (30%), Positives = 131/236 (55%), Gaps = 1/236 (0%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
+ +++ RY+PDSP++L I+ + + G IGIVGR+GSGK+TL + R P G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1046 VDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL-DPLSQHTDQEIWEVLAKCHLGEA 1104
+DG D++ + LR + G++ QD L N ++ N+ + +++ +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1105 VREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKT 1164
+ E G +++V E G+ S GQRQ + RAL+ +IL+ DEAT+++D ++ ++ +
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1165 IRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVR 1220
+ TVI +AHR+ TV + ++ + GK+ E + +L+ SL+ L +
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 70.3 bits (172), Expect = 8e-14
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I+ ++ F ++ S + NI+L ++ G+ + I G GSGKSTL I G +
Sbjct: 2 ITFRNIRFRYKPDS-PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 688 LQNSWLAANVENPNVSTLRLIVVYLLIGFVS 718
L ++ +++ + +G V
Sbjct: 61 L--------IDGHDLALADPNWLRRQVGVVL 83
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 205 bits (523), Expect = 2e-60
Identities = 68/247 (27%), Positives = 122/247 (49%), Gaps = 8/247 (3%)
Query: 980 WPVVGKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV 1037
+ G V D+ Y RPD VL+G++ T G +VG GSGK+T+ L L
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVL-VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64
Query: 1038 EPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL--DPLSQHTDQEIWEV 1095
+P GG++L+DG + + L + + Q+P +F +++ N+ + T +EI
Sbjct: 65 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAA 124
Query: 1096 LAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDN 1155
K + G D+ V E GS S GQRQ L RAL+R+ +L+LD+AT+++D
Sbjct: 125 AVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 184
Query: 1156 ATDMILQKTIR--AEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGS 1213
+ + +++ + E +V+ + + V +L + G + E +LM+++G
Sbjct: 185 NSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKG- 243
Query: 1214 LFGQLVR 1220
+ +V+
Sbjct: 244 CYWAMVQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.9 bits (176), Expect = 2e-14
Identities = 17/67 (25%), Positives = 34/67 (50%)
Query: 622 ENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP 681
++ ++ + SF++ ++ ++ +RPG+ A+ G GSGKST+ A +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 682 HTQGTIL 688
T G +L
Sbjct: 66 PTGGQLL 72
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 196 bits (500), Expect = 2e-57
Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 4/234 (1%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
+ Y DS +L+ IS + I G +G GK+T+ L R +P G+I +DG
Sbjct: 6 HVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
Query: 1050 DISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLD--PLSQHTDQEIWEVLAKCHLGEAVRE 1107
I + L + RS+ G + QD + GT+R NL +TD+++W+VL V
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA 1167
+ L++ V E G S GQRQ + RA LR +IL+LDEATAS+D+ ++ ++QK + +
Sbjct: 125 MPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184
Query: 1168 EFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221
T + +AHR+ T++D + I G++ + +L+ L+ + V E
Sbjct: 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHP-LYAKYVSE 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 74.5 bits (183), Expect = 3e-15
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
++S + F++++S + +R+IS E +P +A G G GKST+ + + T G
Sbjct: 1 MLSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58
Query: 687 ILQNSWLAANVENPNVSTLRLIVVYL 712
I + ++N ++ R + ++
Sbjct: 59 ITIDGQ---PIDNISLENWRSQIGFV 81
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 188 bits (479), Expect = 4e-54
Identities = 57/271 (21%), Positives = 104/271 (38%), Gaps = 20/271 (7%)
Query: 952 ISVERLN-QYMHVPSEAPEVVEDNRPP-PNWPVVGKVDICDLQIRYRPDSPLVLKGISCT 1009
I +E + + E E V+ + + V L + P VLK I+
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLN 58
Query: 1010 FEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQD 1069
E G + I G TGSGKT+L+ + +E + G I G R Q
Sbjct: 59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQF 105
Query: 1070 PTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129
+ GT++ N+ + + V+ C L + + + ++++ E G S GQR
Sbjct: 106 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 165
Query: 1130 LFCLGRALLRRSRILVLDEATASIDNAT-DMILQKTIRAEFADCTVITVAHRIPTVMDCT 1188
L RA+ + + + +LD +D T + + + + A+ T I V ++ +
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD 225
Query: 1189 MVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219
+L + G Y +L +L+
Sbjct: 226 KILILHQGSSYFYGTFSELQSLRPDFSSKLM 256
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.2 bits (182), Expect = 8e-15
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 20/116 (17%)
Query: 589 GVFIQANVAFS--RIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTM 646
G+ ++ AF LE + + + + + NV SFS P +
Sbjct: 2 GIIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNV---------SFSHLCLVGNPVL 52
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL---------QNSWL 693
+NI+L + G+ +AI G GSGK++LL ILGE+ ++G I Q SW+
Sbjct: 53 KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 108
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 121 bits (304), Expect = 4e-31
Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 36/250 (14%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
K+ + DL RY VLKG+S G I I+G +GSGK+T + + L +P+ G I
Sbjct: 2 KLHVIDLHKRY--GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1045 LVDGIDISKLGLHD-------------LRSRFGIIPQDPTLFNG-TVRYNLD--PLSQH- 1087
+V+G +I+ + D LR+R ++ Q L++ TV N+ P+
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 1088 -----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142
+ + LAK + E + K + S GQ+Q + RAL
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKY----------PVHLSGGQQQRVSIARALAMEPD 169
Query: 1143 ILVLDEATASID-NATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200
+L+ DE T+++D +L+ + T++ V H + + V+ + GK+ E
Sbjct: 170 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229
Query: 1201 YDEPMKLMKR 1210
+P ++
Sbjct: 230 EGDPEQVFGN 239
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 57.9 bits (140), Expect = 1e-09
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+ +SL+ R G ++I G GSGKST L I ++G I+
Sbjct: 19 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 118 bits (298), Expect = 2e-30
Identities = 60/241 (24%), Positives = 109/241 (45%), Gaps = 27/241 (11%)
Query: 986 VDICDLQIRYRPDSPLV--LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043
+ + ++ + + + L +S G G++G +G+GK+TLI + L P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1044 ILVDGIDISKLGLHD---LRSRFGIIPQDPTLF-NGTVRYNLD-PLSQH------TDQEI 1092
+LVDG +++ L + R + G+I Q L + TV N+ PL + +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1093 WEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATAS 1152
E+L+ LG+ + L S GQ+Q + RAL ++L+ DEAT++
Sbjct: 122 TELLSLVGLGDKHDSYPSNL-----------SGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1153 IDNATDMILQKTIR--AEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209
+D AT + + ++ T++ + H + V C V IS+G+L E D ++
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 1210 R 1210
Sbjct: 231 H 231
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 54.1 bits (130), Expect = 2e-08
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
N+SL V GQ + G G+GKSTL+ + T+G++L
Sbjct: 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL 63
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 117 bits (295), Expect = 3e-30
Identities = 45/231 (19%), Positives = 95/231 (41%), Gaps = 15/231 (6%)
Query: 986 VDICDLQIRYRPDSPL--VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043
+ + ++ Y+ + LK ++ + G + I+G +GSGK+T++ + L +P G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1044 ILVDGIDISKLGLHDL----RSRFGIIPQDPTLFNG-TVRYNLD---PLSQHTDQEIWEV 1095
+ +D I + L +L R + G + Q L T N++ E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1096 LAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDN 1155
+ + + + S GQ+Q + RAL I++ D+ T ++D+
Sbjct: 122 RKRA---LECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 1156 ATDMILQKTIR--AEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEP 1204
T + + ++ E TV+ V H I ++ + DG++ ++
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 54.1 bits (130), Expect = 2e-08
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 628 ISIKSASFSWEESSSKPT-MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
I +K+ + +++ ++N++L ++ G+ V+I G GSGKST+L I T+G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 687 IL 688
+
Sbjct: 62 VY 63
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 115 bits (290), Expect = 1e-29
Identities = 42/221 (19%), Positives = 75/221 (33%), Gaps = 22/221 (9%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
L +S G + +VG G+GK+TL+ + + G I G + L
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLAL 72
Query: 1062 RFGIIPQDPTL-FNGTVRYNL-DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVED 1119
+ Q T F V + L T E+ +A LD +
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL----------ALDDKLGRS 122
Query: 1120 GSNWSMGQRQLFCLGRALLR-------RSRILVLDEATASIDNATDMILQKTIRA-EFAD 1171
+ S G+ Q L +L+ ++L+LDE S+D A L K + A
Sbjct: 123 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG 182
Query: 1172 CTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211
++ +H + + + GK+ +++
Sbjct: 183 LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 56.9 bits (137), Expect = 3e-09
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVENP 700
+ + +S EVR G+ + + G G+GKSTLLA + G +G+I + +E
Sbjct: 10 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQ---FAGQPLEAW 65
Query: 701 NVSTLRLIVVYL 712
+ + L L YL
Sbjct: 66 SATKLALHRAYL 77
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 115 bits (290), Expect = 2e-29
Identities = 46/237 (19%), Positives = 95/237 (40%), Gaps = 26/237 (10%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
+V + +L R+ + + ++ T + G + ++G +G GKTT + + L EP G+I
Sbjct: 6 EVKLENLTKRF--GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 1045 LVDGIDISKLGLHDLRSRFGIIPQDPTLFNG-TVRYNLDPLSQHT-------DQEIWEVL 1096
D++ L ++ Q ++ TV N+ + D+ +
Sbjct: 64 YFGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 1097 AKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA 1156
+ E + L S GQRQ + RA++ +L++DE +++D
Sbjct: 122 ELLQIEELLNRYPAQL-----------SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 1157 TDMILQKTIR--AEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210
+ ++ I+ + T I V H M + ++ G+L + P ++ R
Sbjct: 171 LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 54.8 bits (132), Expect = 1e-08
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690
++L ++ G+ + + G G GK+T L I G T+G I
Sbjct: 23 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 66
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 109 bits (274), Expect = 3e-27
Identities = 56/246 (22%), Positives = 112/246 (45%), Gaps = 17/246 (6%)
Query: 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043
G V + DL+ R +LKGIS E G G++G G+GKTT + + L++P+ G
Sbjct: 1 GAVVVKDLRKRI--GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1044 ILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGE 1103
+ V G ++ + H++R +P++ + N+ + + + + E
Sbjct: 59 VTVFGKNVVEE-PHEVRKLISYLPEEAGAYR-----NMQGIEYLRFVAGFYASSSSEIEE 112
Query: 1104 AVRE--KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMIL 1161
V + GL + + S +S G + + RAL+ R+ +LDE T+ +D +
Sbjct: 113 MVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 172
Query: 1162 QKTIRAEFADC-TVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGS-----L 1214
+K ++ + T++ +H + V C + I +G + E +L +R + +
Sbjct: 173 RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEV 232
Query: 1215 FGQLVR 1220
F ++V+
Sbjct: 233 FEEVVK 238
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 55.4 bits (133), Expect = 9e-09
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ +K K ++ IS E+ G+ + G G+GK+T L I + + G +
Sbjct: 3 VVVKDLRKRI---GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 59
Query: 688 LQNSW 692
Sbjct: 60 TVFGK 64
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 99.6 bits (248), Expect = 3e-24
Identities = 45/202 (22%), Positives = 87/202 (43%), Gaps = 26/202 (12%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
K++I DL + Y D P VL+ I+ T E G+ + G G GKTTL+ + ++P G+I
Sbjct: 2 KLEIRDLSVGY--DKP-VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1045 LVDGIDISKLGLHDLRSRFGIIPQDPTLFNG-TVRYNLDPLSQH-----TDQEIWEVLAK 1098
+ +G+ I ++ + +P++ + +V L ++ EI + L
Sbjct: 59 IYNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 1099 CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158
+ + ++ S G + L LL + I VLD+ +ID +
Sbjct: 114 VEVLDLKKK------------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 1159 MILQKTIRAEFADCTVITVAHR 1180
+ K+I + ++ ++ R
Sbjct: 162 HKVLKSILEILKEKGIVIISSR 183
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 59.2 bits (143), Expect = 2e-10
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ I+ S ++ KP + I++ + G V G G GK+TLL I + +G I
Sbjct: 3 LEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 688 LQN 690
+ N
Sbjct: 59 IYN 61
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 100 bits (249), Expect = 6e-24
Identities = 44/235 (18%), Positives = 95/235 (40%), Gaps = 16/235 (6%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
V + D+ + ++ +S + G + ++G +G GKTT + + L EP+ G+I
Sbjct: 3 GVRLVDVWKVF--GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1045 LVDGIDISKLGLHDLR----SRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCH 1100
+ ++ ++ Q L+ ++ + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYP-----HMTVYDNIAFPLKLRKVPRQE 115
Query: 1101 LGEAVRE--KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158
+ + VRE + GL L+ S GQRQ LGRA++R+ ++ ++DE +++D
Sbjct: 116 IDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
Query: 1159 MILQKTIR--AEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210
+ ++ ++ T I V H M + ++ G L + P ++ +
Sbjct: 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 53.8 bits (129), Expect = 3e-08
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSW 692
R +SLEV+ G+ + + G G GK+T L I G ++G I
Sbjct: 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDK 65
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 99.7 bits (248), Expect = 9e-24
Identities = 46/222 (20%), Positives = 82/222 (36%), Gaps = 13/222 (5%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-R 1060
L G+S + G I+G GSGK+TLI + ++ G++ + DI+ +L
Sbjct: 19 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 78
Query: 1061 SRFGIIPQDPTLF-NGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVRE---------KEN 1110
Q P TV NL + L E +
Sbjct: 79 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 138
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA 1170
L L S GQ +L +GRAL+ +++V+DE A + + + A
Sbjct: 139 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 198
Query: 1171 D-CTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210
T + + HR+ V++ + + +G++ + +K
Sbjct: 199 KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 57.7 bits (139), Expect = 2e-09
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690
+S+ V G I G GSGKSTL+ I G + +G +
Sbjct: 21 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 64
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 99.0 bits (246), Expect = 1e-23
Identities = 47/239 (19%), Positives = 98/239 (41%), Gaps = 13/239 (5%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
++ + ++ ++ + L ++ E G + GI+G +G+GKTT + + L P+ G++
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1045 LVDGIDISKLGLHDLRSRF---GIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHL 1101
D ++ G + G++ Q L+ NL ++K +
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP-----NLTAFENIAFPLTNMKMSKEEI 117
Query: 1102 GEAVRE--KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM 1159
+ V E K + ++ S Q+Q L RAL++ +L+LDE +++D
Sbjct: 118 RKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 1160 ILQKTIR--AEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLF 1215
+ ++ T++ V+H + V + GKL + +P L S+
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 56.2 bits (135), Expect = 5e-09
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
I +K+ S ++ + N+++ + G++ I G G+GK+T + I G + G +
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 688 LQNSW 692
+
Sbjct: 63 YFDDR 67
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 98.1 bits (244), Expect = 2e-23
Identities = 45/236 (19%), Positives = 88/236 (37%), Gaps = 26/236 (11%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
V + ++ + +V K I+ G + VG +G GK+TL+ + L G +
Sbjct: 1 VQLQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1046 VDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQH--------TDQEIWEVLA 1097
+ ++ G++ Q L+ +Q + +V
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116
Query: 1098 KCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT 1157
L + K L S GQRQ +GR L+ + +LDE +++D A
Sbjct: 117 VLQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 165
Query: 1158 DMILQKTIR--AEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210
+ ++ I + T+I V H M ++ + G++A+ +P++L
Sbjct: 166 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 55.0 bits (132), Expect = 1e-08
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ +++ + +W E ++I+L++ G+ V G G GKSTLL I G T G +
Sbjct: 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 688 LQNSW 692
Sbjct: 58 FIGEK 62
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 94.7 bits (235), Expect = 3e-22
Identities = 50/230 (21%), Positives = 102/230 (44%), Gaps = 18/230 (7%)
Query: 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL 1045
++I L +++ L +S E G I+G TG+GKT + + P G+IL
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1046 VDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAV 1105
+DG D++ L + + Q+ +LF ++ + E + K + V
Sbjct: 59 LDGKDVTD--LSPEKHDIAFVYQNYSLFPH--------MNVKKNLEFGMRMKKIKDPKRV 108
Query: 1106 RE--KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQK 1163
+ ++ ++ L+ + S G++Q L RAL+ +IL+LDE +++D T ++
Sbjct: 109 LDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE 168
Query: 1164 TIR--AEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210
+ + TV+ + H + + DGKL + +P ++ ++
Sbjct: 169 MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 55.1 bits (132), Expect = 9e-09
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686
+I I+S S W+ ++ N+SL+V G+ I G G+GK+ L I G G
Sbjct: 1 MIEIESLSRKWK----NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR 56
Query: 687 IL 688
IL
Sbjct: 57 IL 58
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 94.2 bits (234), Expect = 6e-22
Identities = 50/231 (21%), Positives = 99/231 (42%), Gaps = 14/231 (6%)
Query: 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILV 1046
++ L + Y + +KGI G + ++G G+GKTT + A+ LV GKI+
Sbjct: 8 EVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 1047 DGIDISKLGLHDLRSR-FGIIPQDPTLF-NGTVRYNL--DPLSQHTDQEIWEVLAKCHLG 1102
+G DI+ H + ++P+ +F TV NL ++ + I L
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL------ 119
Query: 1103 EAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQ 1162
E + L + + G S G++Q+ +GRAL+ R ++L++DE + + +
Sbjct: 120 EWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 1163 KTIRAEFAD-CTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211
+ I+ + T++ V + + G++ + +L+ E
Sbjct: 180 EVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 55.7 bits (134), Expect = 6e-09
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSW 692
+ I L+V GQ V + G G+GK+T L+AI G V +G I+ N
Sbjct: 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ 68
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 86.2 bits (213), Expect = 3e-19
Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 23/224 (10%)
Query: 1006 ISCTFE-GGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064
++ FE G ++G TG+GK+ + + +V+P G++ ++G DI+ L R G
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73
Query: 1065 IIPQDPTLFNGTVRY--NLDPLSQHTDQEIW----EVLAKCHLGEAVREKENGLDSLVVE 1118
+PQD LF Y L E E+ K + + K
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK---------- 123
Query: 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR--AEFADCTVIT 1176
+ S G+RQ L RAL+ + R+L+LDE +++D T +L + +R D ++
Sbjct: 124 -PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 1177 VAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219
V H + V + +G++ E + +L + + +
Sbjct: 183 VTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 48.1 bits (114), Expect = 2e-06
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690
N+ E+ + G G+GKS L I G V +G + N
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLN 58
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.3 bits (194), Expect = 3e-17
Identities = 23/171 (13%), Positives = 50/171 (29%), Gaps = 7/171 (4%)
Query: 1016 IGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNG 1075
+ + G G GKTTLI +++ +G + + + G + + +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 1076 TVRYNLDPLS------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129
D +E LA L A G V+++ + +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHR 1180
R L ++L + +++ + +T +R
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKGKPLAL-VEEIRNRKDVKVFNVTKENR 173
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 77.3 bits (189), Expect = 8e-17
Identities = 19/192 (9%), Positives = 41/192 (21%), Gaps = 28/192 (14%)
Query: 1015 KIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFN 1074
KI I G G GKTTL+ + + + + + + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 1075 GTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134
S + + +E
Sbjct: 62 KFFTSKKLVGSYGVNVQYFE----------------------------ELAIPILERAYR 93
Query: 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAIS 1194
A R +++++DE + + V+ + +
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 1195 DGKLAEYDEPMK 1206
L E +
Sbjct: 154 GAVLIELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 43.8 bits (102), Expect = 3e-05
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 658 KVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690
K+ I GE G GK+TL+ I+ +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTE 34
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 58.8 bits (140), Expect = 1e-09
Identities = 29/304 (9%), Positives = 89/304 (29%), Gaps = 2/304 (0%)
Query: 308 YWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLS 367
+ + ++G +L + + LL + GK ++ + + + + S
Sbjct: 14 FKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITS 73
Query: 368 QRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW 427
Y S + G V ++ +G +
Sbjct: 74 YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGA 133
Query: 428 FHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDE 487
+ + I++F+ +I +V+ I + ++K + +
Sbjct: 134 LITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQ 193
Query: 488 RLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPVLV 547
+ + L K + ++ + + + N + + + + L
Sbjct: 194 VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA 253
Query: 548 STAT--FGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFL 605
+ + L A + +++ + P++ + +V F + A + L
Sbjct: 254 LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL 313
Query: 606 EAPE 609
++ +
Sbjct: 314 DSEQ 317
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 51.8 bits (122), Expect = 2e-07
Identities = 48/311 (15%), Positives = 90/311 (28%), Gaps = 9/311 (2%)
Query: 308 YWRDIFMSGFFALLKVLTLSAGPLLLNAFI------LVTEGKAGFKYEGYVLAITLFVAK 361
Y IF + ++K PLL+ I + + I LF+
Sbjct: 12 YKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFV 71
Query: 362 ILESLSQR-QWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYR 420
I+ + + Y + + Q + G I +
Sbjct: 72 IVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQT 131
Query: 421 IGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTK 480
IW + + IAL I+F T+AAL + +L K +
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 481 LMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLF 540
A E E + + V+K +A E + + AY+
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 541 WSSPVLVSTAT--FGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAF 598
+ + GA ++ + + FV L L+ P+R + Q+ +
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASM 311
Query: 599 SRIVNFLEAPE 609
R+ ++
Sbjct: 312 DRVFQLIDEDY 322
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 39.7 bits (91), Expect = 0.001
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE 679
SKP E+ KVAI G GKSTL AIL +
Sbjct: 1 SKP-------EITDAIKVAIVGRPNVGKSTLFNAILNK 31
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 38.4 bits (88), Expect = 0.002
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 1016 IGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD 1058
+ +G+GKTTL+ L + G + + + +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDK 47
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Score = 37.9 bits (87), Expect = 0.003
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 1016 IGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS 1052
+VG SGKTTL+ G ++
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1232 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.94 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.92 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.77 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.74 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.71 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.52 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.34 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.34 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.3 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.26 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.26 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.26 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.24 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.12 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.08 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.07 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.06 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.05 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.05 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.04 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.04 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.03 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.01 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.01 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.01 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 98.97 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.74 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 98.55 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 98.24 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 96.86 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.86 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.82 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.82 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.68 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.27 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.03 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.58 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.55 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.49 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.46 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.29 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.28 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.24 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.15 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 95.05 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.9 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.86 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.85 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.78 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.63 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.58 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.55 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.54 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.42 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 94.37 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.99 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.98 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.94 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.86 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.64 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.63 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.6 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.53 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.52 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 93.49 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.46 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.43 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.39 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.38 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.33 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.32 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.3 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.29 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.11 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.08 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.08 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.07 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.07 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.06 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.04 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.0 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.88 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 92.86 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.8 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.62 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 92.62 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 92.6 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.51 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.31 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.3 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 92.27 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.12 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.12 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 92.11 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.04 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.0 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 91.89 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 91.88 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 91.86 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.77 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 91.75 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 91.66 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.61 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 91.61 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.59 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 91.59 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 91.56 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 91.45 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.42 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.42 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.34 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.23 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 91.18 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 91.1 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.1 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.09 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 91.04 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.98 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 90.96 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.95 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 90.89 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 90.82 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 90.78 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 90.62 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 90.61 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 90.56 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 90.49 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 90.49 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.44 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 90.43 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 90.31 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 90.31 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 90.28 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 90.27 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.26 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.26 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.19 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.16 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.15 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 89.96 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 89.95 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 89.88 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.8 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.78 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.75 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.72 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 89.71 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 89.67 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.64 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 89.54 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.53 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 89.49 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.42 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 89.36 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.35 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 89.34 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.33 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.32 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.31 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.15 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.11 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 89.1 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.05 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 89.03 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.0 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 88.97 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 88.96 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.87 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 88.85 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.79 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.75 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 88.55 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.54 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.51 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 88.42 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.34 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.28 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.15 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 88.06 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 87.95 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 87.81 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 87.78 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 87.69 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 87.64 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 87.63 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 87.57 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 87.54 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 87.53 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 87.47 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.43 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 87.29 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 87.23 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.19 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 87.14 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.11 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 87.0 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.99 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 86.95 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 86.88 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 86.87 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 86.84 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 86.81 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 86.79 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 86.77 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 86.74 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 86.6 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 86.55 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 86.52 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 86.5 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 86.44 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 86.28 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 86.26 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 86.21 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.2 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 86.13 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 86.1 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 86.01 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 85.98 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.97 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.95 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 85.94 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.86 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 85.8 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 85.74 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.73 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 85.71 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 85.64 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 85.63 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 85.6 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 85.55 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 85.54 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 85.49 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 85.49 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 85.28 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 85.27 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 85.22 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.17 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 85.1 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 85.09 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 85.09 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 85.09 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 85.09 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 85.07 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.04 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 85.04 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 85.0 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 84.98 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 84.95 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 84.94 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.89 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 84.81 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 84.72 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 84.66 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.59 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 84.59 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 84.57 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 84.56 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 84.54 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 84.53 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 84.52 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 84.51 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 84.48 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 84.39 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 84.28 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 84.27 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 84.17 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 84.11 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 84.11 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 84.1 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 84.05 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 84.03 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 83.99 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 83.96 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 83.91 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 83.86 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 83.85 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 83.85 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 83.81 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 83.69 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 83.63 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 83.54 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.54 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 83.52 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 83.49 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 83.49 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 83.48 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 83.39 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 83.39 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 83.29 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 83.28 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 83.23 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 83.22 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 83.2 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 83.16 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 83.16 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 83.16 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 83.15 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 83.13 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 83.06 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 83.0 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 82.86 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 82.8 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 82.79 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 82.75 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 82.73 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 82.66 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 82.54 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 82.42 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 82.38 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 82.36 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 82.29 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 82.27 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 82.26 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 82.23 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 82.22 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 82.19 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 82.16 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 82.13 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 82.12 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 82.07 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 82.03 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 81.96 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 81.85 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 81.84 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 81.83 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 81.75 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 81.7 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 81.69 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 81.67 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 81.67 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 81.64 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 81.63 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 81.47 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 81.36 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 81.31 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 81.29 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 81.28 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 81.25 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 81.18 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 81.1 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 81.06 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.04 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 80.91 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 80.86 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 80.85 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 80.79 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 80.79 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 80.78 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 80.74 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 80.7 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 80.68 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.67 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 80.64 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 80.6 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 80.59 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 80.59 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 80.58 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 80.57 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 80.42 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 80.3 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 80.28 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 80.23 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 80.21 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=481.15 Aligned_cols=238 Identities=30% Similarity=0.524 Sum_probs=229.8
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 18998347675599993000001899589399998799998688999981465688528999996179989676630178
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
+|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||+|++.++.+++|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHCCCCCCC-CCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 8826887776547760377999-999999999998599188984005875322389998893699999999987059988
Q 000904 1065 IIPQDPTLFNGTVRYNLDPLSQ-HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI 1143 (1232)
Q Consensus 1065 iIpQdP~LF~gTIR~NLdp~~~-~sd~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~I 1143 (1232)
+|||+|.+|++||++|+..... .++++++++++.+++.+.+..+|.++++.++++|.+||||||||+|||||++++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHHH
Q ss_conf 9986667798999799999999985599389998449235640186999959879773691478720397899999999
Q 000904 1144 LVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1144 LILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHrl~tI~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~F~~lv~~~ 1222 (1232)
||||||||+||+.|+..|.+.|++..+++|+|+||||++++..||||+||++|+|+|+|+|++|++++++.|++|++..
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
T ss_conf 5564776555989999999999998589989999788999984999999989999998899999829987899999981
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=477.78 Aligned_cols=240 Identities=30% Similarity=0.478 Sum_probs=229.5
Q ss_pred CCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 98521899834767559999300000189958939999879999868899998146568852899999617998967663
Q 000904 981 PVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLR 1060 (1232)
Q Consensus 981 p~~g~I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR 1060 (1232)
..+|.|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|++.++.+++|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCEEEECCCCCCCCCCHHHCCCCCC-CCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 0178882688777654776037799-999999999999859918898400587532238999889369999999998705
Q 000904 1061 SRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1061 ~~i~iIpQdP~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr 1139 (1232)
++++||||+|.+|+||||+|+.... ..+|++++++++.+++.+++..+|.|||+.++++|.+||||||||+|||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHH
Q ss_conf 99889986667798999799999999985599389998449235640186999959879773691478720397899999
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219 (1232)
Q Consensus 1140 ~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHrl~tI~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~F~~lv 1219 (1232)
+|+||+||||||+||.+|+..|.+.|++..+++|+|+||||++.+..||||++|++|+|+|.|+|++|+++ ++.|++|+
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHH
T ss_conf 99899983765447977999999999987538889999689999985999999989999998899999868-84999999
Q ss_pred HH
Q ss_conf 99
Q 000904 1220 RE 1221 (1232)
Q Consensus 1220 ~~ 1221 (1232)
+.
T Consensus 251 ~~ 252 (255)
T d2hyda1 251 SI 252 (255)
T ss_dssp TT
T ss_pred HH
T ss_conf 97
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=470.98 Aligned_cols=239 Identities=29% Similarity=0.489 Sum_probs=228.5
Q ss_pred CCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 85218998347675599993000001899589399998799998688999981465688528999996179989676630
Q 000904 982 VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061 (1232)
Q Consensus 982 ~~g~I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~ 1061 (1232)
..|.|+|+||+|+|+.+..++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+++|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CEEEECCCCCCCCCCHHHCCCCC--CCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 17888268877765477603779--9999999999999859918898400587532238999889369999999998705
Q 000904 1062 RFGIIPQDPTLFNGTVRYNLDPL--SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1062 ~i~iIpQdP~LF~gTIR~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr 1139 (1232)
+++++||+|.+|.+|+++|+... ..+++++++++++.+++.+++..+|.||++.++++|.+||||||||+||||||++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHH
Q ss_conf 99889986667798999799999999985599389998449235640186999959879773691478720397899999
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219 (1232)
Q Consensus 1140 ~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHrl~tI~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~F~~lv 1219 (1232)
+|+||+||||||++|.+|+..|.+.|++..+++|+|+||||++.+..||+|+||++|+|+|.|+|++|+++ ++.|++|+
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHH
T ss_conf 99889951644458988999999999875227889999887999985999999989999998899999868-93999999
Q ss_pred HH
Q ss_conf 99
Q 000904 1220 RE 1221 (1232)
Q Consensus 1220 ~~ 1221 (1232)
+.
T Consensus 249 ~~ 250 (253)
T d3b60a1 249 KM 250 (253)
T ss_dssp HH
T ss_pred HH
T ss_conf 97
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=459.60 Aligned_cols=239 Identities=27% Similarity=0.435 Sum_probs=224.5
Q ss_pred CCCCEEEEEEEEEEECCC-CCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 985218998347675599-9930000018995893999987999986889999814656885289999961799896766
Q 000904 981 PVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL 1059 (1232)
Q Consensus 981 p~~g~I~~~nv~~~Y~~~-~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~L 1059 (1232)
+..|.|+|+||+|+|+.. ..++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCEEEECCCCCCCCCCHHHCCCCC--CCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3017888268877765477603779--99999999999998599188984005875322389998893699999999987
Q 000904 1060 RSRFGIIPQDPTLFNGTVRYNLDPL--SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1060 R~~i~iIpQdP~LF~gTIR~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARAL 1137 (1232)
|+++++|||+|.+|++||++|+... ...++++++++.+++++.+++..+|.|+++.++++|.+||||||||+||||||
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHH
Q ss_conf 059988998666779899979999999998559--938999844923564018699995987977369147872039789
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1138 Lr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~--~~TVI~IAHrl~tI~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~F 1215 (1232)
+++|+||+||||||++|..++..+++.|++..+ ++|+|+||||++++..||||+||++|+|+|.|+|++|+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf 568707871675765685368999999999765069899999597999985999999989999998899999859-7588
Q ss_pred HHHHH
Q ss_conf 99999
Q 000904 1216 GQLVR 1220 (1232)
Q Consensus 1216 ~~lv~ 1220 (1232)
++|++
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=465.81 Aligned_cols=234 Identities=31% Similarity=0.525 Sum_probs=223.8
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 89983476755999930000018995893999987999986889999814656885289999961799896766301788
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++||+|+|+.+ +++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+++|+++++
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCHHHCCCCC--CCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 8268877765477603779--99999999999998599188984005875322389998893699999999987059988
Q 000904 1066 IPQDPTLFNGTVRYNLDPL--SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI 1143 (1232)
Q Consensus 1066 IpQdP~LF~gTIR~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~I 1143 (1232)
|||||.+|++|||+|+... ...++++++++++.+++.+++...|.++++.++++|.+||||||||+||||||+++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75665457853454301244555423567789999975554203742101523687898799999999999998529989
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHH
Q ss_conf 998666779899979999999998559938999844923564018699995987977369147872039789999999
Q 000904 1144 LVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1144 LILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHrl~tI~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~F~~lv~~ 1221 (1232)
|+||||||++|..++..+++.|++..+++|+|+||||++.+..||||+||++|+|+|.|+|++|+++ ++.|++|+++
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~ 237 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHH
T ss_conf 9965886556988999998878887179989999787999984999999989999999999999868-9699999999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=390.19 Aligned_cols=218 Identities=23% Similarity=0.298 Sum_probs=198.2
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 21899834767559999300000189958939999879999868899998146568852899999617998967663017
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 g~I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
+.|.|+|+++.+ .+||+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|| ++
T Consensus 37 ~~i~~~~~~~~g----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i 99 (281)
T d1r0wa_ 37 NNVSFSHLCLVG----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RV 99 (281)
T ss_dssp ---CHHHHHHTT----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CE
T ss_pred CCEEEEECCCCC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------EE
T ss_conf 967999769899----7677375999859999999989998299999999579747882899999-------------99
Q ss_pred EEECCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 88826887776547760377999999999999998599188984005875322389998893699999999987059988
Q 000904 1064 GIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI 1143 (1232)
Q Consensus 1064 ~iIpQdP~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~I 1143 (1232)
+|+||+|.+|.+||++|+.....+++.+++++++.+++.+.+..++.++++.+++.|.+||||||||++|||||+++|+|
T Consensus 100 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~i 179 (281)
T d1r0wa_ 100 SFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL 179 (281)
T ss_dssp EEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99816430267603214203334560579999999776999984612332355554237799999999999999869635
Q ss_pred EEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHH
Q ss_conf 998666779899979999999-9985599389998449235640186999959879773691478720397899999
Q 000904 1144 LVLDEATASIDNATDMILQKT-IRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219 (1232)
Q Consensus 1144 LILDEaTsslD~~Td~~Iq~~-Ir~~f~~~TVI~IAHrl~tI~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~F~~lv 1219 (1232)
|+|||||++||+.+...+.+. ++...+++|+|+|+||++.+..||||++|++|+++++|+|++|++. .+.|.+..
T Consensus 180 llLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~ 255 (281)
T d1r0wa_ 180 YLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKL 255 (281)
T ss_dssp EEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCC-CCHHHHHH
T ss_conf 13338554489899999999999886289999999252899985999999989999998789999605-94899987
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.5e-44 Score=364.10 Aligned_cols=220 Identities=20% Similarity=0.321 Sum_probs=194.4
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHC
Q ss_conf 18998347675599993000001899589399998799998688999981465688528999996179989---676630
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG---LHDLRS 1061 (1232)
Q Consensus 985 ~I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~---l~~LR~ 1061 (1232)
.|+++|++.+|+.+...+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|++..+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CEEEECCCCCCCCC-CHHHCCCCC-C--CCC----HHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 17888268877765-477603779-9--999----999999999859918898400587532238999889369999999
Q 000904 1062 RFGIIPQDPTLFNG-TVRYNLDPL-S--QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCL 1133 (1232)
Q Consensus 1062 ~i~iIpQdP~LF~g-TIR~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~L 1133 (1232)
++++|||+|.+|.. ||++|+... . ..+ ++++.++|+.+++.+.....| .+||||||||++|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQRvai 151 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRVAL 151 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCH-----------HHCCHHHHHHHHH
T ss_conf 51477304334666657777665567613799999999999986659176664895-----------4599999858998
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 998705998899866677989997999999999855--99389998449235640-186999959879773691478720
Q 000904 1134 GRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1134 ARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHrl~tI~~-~DrVlVL~~G~ivE~g~p~~Ll~~ 1210 (1232)
||||..+|++|++||||+++|+.+...+.+.|++.. .+.|+|+||||++.+.. ||||++|++|++++.|+|++++++
T Consensus 152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 75776046614544786679989988998999999863598799997999999996999999989999998699999868
Q ss_pred CCCHH
Q ss_conf 39789
Q 000904 1211 EGSLF 1215 (1232)
Q Consensus 1211 ~~s~F 1215 (1232)
|...|
T Consensus 232 P~~~~ 236 (242)
T d1oxxk2 232 PVSIQ 236 (242)
T ss_dssp CSSHH
T ss_pred CCCHH
T ss_conf 99979
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=8.3e-44 Score=358.46 Aligned_cols=216 Identities=21% Similarity=0.316 Sum_probs=191.0
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 18998347675599993000001899589399998799998688999981465688528999996179989676630178
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++.+|.. ..+|+||||++++||.+||+|+||||||||++++.|+++|++|+|.+||.|++..+.+ |++++
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 4999879999999--9998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EECCCCCCCC-CCHHHCCCCCC---CCCH----HHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8826887776-54776037799---9999----99999999859918898400587532238999889369999999998
Q 000904 1065 IIPQDPTLFN-GTVRYNLDPLS---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iIpQdP~LF~-gTIR~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARA 1136 (1232)
++||+|.+|. -||++|+.... ..+. +.+.++|+.+++.+..... ...||||||||++||||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRY-----------PAQLSGGQRQRVAVARA 150 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSC-----------TTTCCSSCHHHHHHHHH
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCC-----------HHHCCHHHHHHHHHHHH
T ss_conf 9800335342220999999999873999999999999999875985566099-----------54699999889999766
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHHCCC
Q ss_conf 705998899866677989997999999999855--99389998449235640-186999959879773691478720397
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGS 1213 (1232)
Q Consensus 1137 LLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHrl~tI~~-~DrVlVL~~G~ivE~g~p~~Ll~~~~s 1213 (1232)
|+.+|+||+|||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||||++|++|++++.|+|++++++|..
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 230 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 230 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
T ss_conf 40499824306886668989998999999999873198079994899999986999999989999998599999868999
Q ss_pred HH
Q ss_conf 89
Q 000904 1214 LF 1215 (1232)
Q Consensus 1214 ~F 1215 (1232)
.|
T Consensus 231 ~~ 232 (239)
T d1v43a3 231 VF 232 (239)
T ss_dssp HH
T ss_pred HH
T ss_conf 89
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-43 Score=357.67 Aligned_cols=215 Identities=22% Similarity=0.334 Sum_probs=191.7
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 89983476755999930000018995893999987999986889999814656885289999961799896766301788
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|.. ..+|+|+||+|++||.+||+|+||||||||++++.|+.+|++|+|.+||.|++..+. .|+++++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEEE
T ss_conf 999999999899--999811177886998999998999829999999965878888889999997788864--4432223
Q ss_pred ECCCCCCCCC-CHHHCCCCCCC---C----CHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8268877765-47760377999---9----99999999998599188984005875322389998893699999999987
Q 000904 1066 IPQDPTLFNG-TVRYNLDPLSQ---H----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 IpQdP~LF~g-TIR~NLdp~~~---~----sd~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARAL 1137 (1232)
|||+|.+|.. |+++|+..... . .++++.++|+.+++.+.....| .+||||||||++|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHHH
T ss_conf 4334202643337889789998759988999999999997578865664896-----------56999999999999997
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHHCCCH
Q ss_conf 05998899866677989997999999999855--99389998449235640-1869999598797736914787203978
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSL 1214 (1232)
Q Consensus 1138 Lr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHrl~tI~~-~DrVlVL~~G~ivE~g~p~~Ll~~~~s~ 1214 (1232)
+.+|++|+|||||++||+.+...+.+.|++.. .+.|+|+|+|+++.+.. ||||++|++|++++.|+|.+++++|...
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~ 225 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCH
T ss_conf 03998899758887889889989999999998742987999948999999969999999799999980899997389997
Q ss_pred H
Q ss_conf 9
Q 000904 1215 F 1215 (1232)
Q Consensus 1215 F 1215 (1232)
|
T Consensus 226 ~ 226 (232)
T d2awna2 226 F 226 (232)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5e-44 Score=360.16 Aligned_cols=219 Identities=27% Similarity=0.427 Sum_probs=191.7
Q ss_pred EEEEEEEEEECCCCC--CCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899834767559999--3000001899589399998799998688999981465688528999996179989676---63
Q 000904 986 VDICDLQIRYRPDSP--LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD---LR 1060 (1232)
Q Consensus 986 I~~~nv~~~Y~~~~~--~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR 1060 (1232)
|+++|++..|+.+.. .+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCEEEECCCCCCCCC-CHHHCCCC----CCC---CCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 017888268877765-47760377----999---9999999999985991889840058753223899988936999999
Q 000904 1061 SRFGIIPQDPTLFNG-TVRYNLDP----LSQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1061 ~~i~iIpQdP~LF~g-TIR~NLdp----~~~---~sd~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~ 1132 (1232)
+++++|||+|.+|.. ||++|+.. .+. ..++++.++|+++++.+..... ...||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~-----------~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY-----------PSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSC-----------BSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCC-----------HHHCCHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976990355489-----------4349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9998705998899866677989997999999999855--99389998449235640-18699995987977369147872
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHrl~tI~~-~DrVlVL~~G~ivE~g~p~~Ll~ 1209 (1232)
|||||+.+|++|++||||+++|+.+...+++.|++.. .+.|+|+|+||++.+.. ||||++|++|+|+|.|+|+++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred HCCCHH
Q ss_conf 039789
Q 000904 1210 REGSLF 1215 (1232)
Q Consensus 1210 ~~~s~F 1215 (1232)
+|...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCCHH
T ss_conf 899857
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.2e-43 Score=357.05 Aligned_cols=214 Identities=23% Similarity=0.372 Sum_probs=191.3
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 89983476755999930000018995893999987999986889999814656885289999961799896766301788
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++.+|.. .+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+++++.. |+++++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred ECCCCCCCCC-CHHHCCCC----CCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 8268877765-47760377----999999999999998599188984005875322389998893699999999987059
Q 000904 1066 IPQDPTLFNG-TVRYNLDP----LSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRR 1140 (1232)
Q Consensus 1066 IpQdP~LF~g-TIR~NLdp----~~~~sd~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~ 1140 (1232)
|||+|.+|.. ||++|+.. .+...++++.++++.+++.+..... ...||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRN-----------PLTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSC-----------GGGSCHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCC-----------HHHCCHHHHCCHHHHHHHHCC
T ss_conf 512111174665778888877640553899999999982565557589-----------554799984014030434436
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHHCCCHH
Q ss_conf 98899866677989997999999999855--99389998449235640-18699995987977369147872039789
Q 000904 1141 SRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1141 ~~ILILDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHrl~tI~~-~DrVlVL~~G~ivE~g~p~~Ll~~~~s~F 1215 (1232)
|++|+|||||++||+.+...+.+.|++.. .+.|+|+|+||++.+.. ||||++|++|++++.|+|++++++|...+
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 771443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=7.1e-44 Score=358.93 Aligned_cols=218 Identities=22% Similarity=0.320 Sum_probs=191.4
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 18998347675599993000001899589399998799998688999981465688528999996179989676----63
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD----LR 1060 (1232)
Q Consensus 985 ~I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~----LR 1060 (1232)
.|+++|++.+|.. ..+|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred CCEEEECCCCCCCCC-CHHHCCCCC---CCCC----HHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 017888268877765-477603779---9999----99999999985991889840058753223899988936999999
Q 000904 1061 SRFGIIPQDPTLFNG-TVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1061 ~~i~iIpQdP~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~ 1132 (1232)
+++++|||+|.+|.. ||++|+... ...+ ++++.+.++.+++.+.....| ..||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----------~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH-----------HHCCHHHHHHHH
T ss_conf 551200221222310116676330687729998999999999998759966762993-----------349999999999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9998705998899866677989997999999999855--99389998449235640-18699995987977369147872
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHrl~tI~~-~DrVlVL~~G~ivE~g~p~~Ll~ 1209 (1232)
|||||+.+|++|+|||||++||+.+...+.+.|++.. .+.|+|+||||++.+.. ||||++|++|++++.|+|+++++
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998269988982588765698999899999999986369889999599999999699999998999999859999982
Q ss_pred HCCCHH
Q ss_conf 039789
Q 000904 1210 REGSLF 1215 (1232)
Q Consensus 1210 ~~~s~F 1215 (1232)
+|...|
T Consensus 230 ~P~~~~ 235 (240)
T d1g2912 230 KPANTF 235 (240)
T ss_dssp SCSBHH
T ss_pred CCCCHH
T ss_conf 899989
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.1e-43 Score=353.98 Aligned_cols=223 Identities=28% Similarity=0.384 Sum_probs=192.8
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---------
Q ss_conf 18998347675599993000001899589399998799998688999981465688528999996179989---------
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG--------- 1055 (1232)
Q Consensus 985 ~I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~--------- 1055 (1232)
.|+++|++++|.. ..+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|++..+
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899--99881506688699799999899982999999997476678997799999933677520000235
Q ss_pred ----HHHHHCCEEEECCCCCCCCC-CHHHCCCC----CCCCC----HHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf ----67663017888268877765-47760377----99999----9999999998599188984005875322389998
Q 000904 1056 ----LHDLRSRFGIIPQDPTLFNG-TVRYNLDP----LSQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSN 1122 (1232)
Q Consensus 1056 ----l~~LR~~i~iIpQdP~LF~g-TIR~NLdp----~~~~s----d~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~n 1122 (1232)
....|+++++|||+|.+|.. |+++|+.. ....+ ++.+.++++.+++.+...... ..+
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----------p~~ 149 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY----------PVH 149 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC----------GGG
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCC----------CCC
T ss_conf 1767999745448998332314110102136565787629998999999999999829952443068----------220
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHH-CCEEEEEECCEEEE
Q ss_conf 89369999999998705998899866677989997999999999855-99389998449235640-18699995987977
Q 000904 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1123 LS~GQRQll~LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHrl~tI~~-~DrVlVL~~G~ivE 1200 (1232)
||||||||++|||||..+|++|++||||++||+.+...|.+.|++.. .+.|+|+|+||++.+.. ||||+||++|+|+|
T Consensus 150 LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~ 229 (258)
T d1b0ua_ 150 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229 (258)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 56778889899999843998788524555688788889987655410368833899489999998699999997999999
Q ss_pred ECCHHHHHHHCCCHHH-HHH
Q ss_conf 3691478720397899-999
Q 000904 1201 YDEPMKLMKREGSLFG-QLV 1219 (1232)
Q Consensus 1201 ~g~p~~Ll~~~~s~F~-~lv 1219 (1232)
.|+|++++.+|...|- +++
T Consensus 230 ~g~~~ev~~~P~~~~~~~ll 249 (258)
T d1b0ua_ 230 EGDPEQVFGNPQSPRLQQFL 249 (258)
T ss_dssp EECHHHHHHSCCSHHHHHHH
T ss_pred ECCHHHHHHCCCCHHHHHHH
T ss_conf 84999998389999999988
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.3e-42 Score=345.87 Aligned_cols=210 Identities=22% Similarity=0.355 Sum_probs=179.7
Q ss_pred EEEEEEEEEECCCCC--CCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 899834767559999--30000018995893999987999986889999814656885289999961799896766----
Q 000904 986 VDICDLQIRYRPDSP--LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL---- 1059 (1232)
Q Consensus 986 I~~~nv~~~Y~~~~~--~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~L---- 1059 (1232)
|+++|++++|+.+.. .+|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCEEEECCCCCCCCC-CHHHCCCC---C---CCCCH----HHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 3017888268877765-47760377---9---99999----999999998599188984005875322389998893699
Q 000904 1060 RSRFGIIPQDPTLFNG-TVRYNLDP---L---SQHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1060 R~~i~iIpQdP~LF~g-TIR~NLdp---~---~~~sd----~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQR 1128 (1232)
|+++++|||+|.+|.. ||++|+.. + +..+. +++.+.|+.++|.+..... ...+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~----------~p~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH----------KPNQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTC----------CGGGSCHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCC----------CHHHCCHHHH
T ss_conf 555778804124176866888775788872247899999999999988762423455348----------8023899999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHH
Q ss_conf 99999998705998899866677989997999999999855--993899984492356401869999598797736914
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPM 1205 (1232)
Q Consensus 1129 Qll~LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHrl~tI~~~DrVlVL~~G~ivE~g~p~ 1205 (1232)
||++|||||+.+|++|+|||||++||+.+...+.+.|++.. .++|+|+||||++.+.-||||++|++|+|+|.|++.
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~r 230 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCCC
T ss_conf 9999875652278889946876546989999999999999984399999987888999869989999899999952579
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.4e-41 Score=337.82 Aligned_cols=215 Identities=22% Similarity=0.363 Sum_probs=182.1
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH-CCE
Q ss_conf 1899834767559999300000189958939999879999868899998146568852899999617998967663-017
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLR-SRF 1063 (1232)
Q Consensus 985 ~I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR-~~i 1063 (1232)
-++++|++++|.. ..+|+||||++++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+...+.+..+ ..+
T Consensus 6 ~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi 83 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred EEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCC
T ss_conf 7999618999899--88883025788899799999999985999999996788888038984244344660888887423
Q ss_pred EEECCCCCCCCC-CHHHCCCCCC--CCCHHH----HHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 888268877765-4776037799--999999----999999859918898400587532238999889369999999998
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLS--QHTDQE----IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1064 ~iIpQdP~LF~g-TIR~NLdp~~--~~sd~e----I~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARA 1136 (1232)
+++||++.+|.. |+++|+.... ....++ +.++++.. .++.........+||||||||++||||
T Consensus 84 ~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~LSGG~~Qrv~iAra 153 (240)
T d1ji0a_ 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF----------PRLKERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHC----------HHHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----------HCHHHHHHCCHHHCCHHHHHHHHHHHH
T ss_conf 5567655457763699999988873278889999999999874----------176888758543389999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHHC
Q ss_conf 705998899866677989997999999999855-99389998449235640-1869999598797736914787203
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1137 LLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHrl~tI~~-~DrVlVL~~G~ivE~g~p~~Ll~~~ 1211 (1232)
|+.+|++|+|||||++||+.+...+.+.|++.. .++|+|+|+|+++.+.. ||||+||++|++++.|+|+++++++
T Consensus 154 L~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred HHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 98299874003988679999999999999999968998999958899999969999999899999984899984298
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.1e-41 Score=337.21 Aligned_cols=215 Identities=25% Similarity=0.405 Sum_probs=186.5
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 21899834767559999300000189958939999879999868899998146568852899999617998967663017
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 g~I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
|.|+++|++.+|.. ..+|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.++|.|+.+. .+++|+++
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred CCEEEEEEEEEECC--EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHHE
T ss_conf 97899958999999--9998062568848979999999999999999999669887888799986724468-39887218
Q ss_pred EEECCCCCCCCC-CHHHCCCCCC---CCCHHH----HHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 888268877765-4776037799---999999----99999985991889840058753223899988936999999999
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLS---QHTDQE----IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1064 ~iIpQdP~LF~g-TIR~NLdp~~---~~sd~e----I~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LAR 1135 (1232)
+++||++.+|.. |+++|+..+. ..++++ +..+++.+++.+.... ...+||+|||||++|||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-----------RVSTYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-----------BGGGCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHH-----------HHHHCCHHHHHHHHHHH
T ss_conf 6750015468786677888989986179989999999999986797888850-----------45337998989999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHHCC
Q ss_conf 8705998899866677989997999999999855-99389998449235640-18699995987977369147872039
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1136 ALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHrl~tI~~-~DrVlVL~~G~ivE~g~p~~Ll~~~~ 1212 (1232)
||+.+|+||+|||||++||+.+...+.+.|++.. .+.|||+++|+++.+.. ||||++|++|++++.|+|+++.++..
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 9865999887337988979899999999999999659989999598999999699999998999999928999986528
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.1e-41 Score=339.44 Aligned_cols=213 Identities=20% Similarity=0.269 Sum_probs=182.8
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-CE
Q ss_conf 18998347675599993000001899589399998799998688999981465688528999996179989676630-17
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS-RF 1063 (1232)
Q Consensus 985 ~I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~-~i 1063 (1232)
-++++|++.+|.. ..+|+||||++++||.+||+|+||||||||+++|.|+++|++|+|.++|.|++..+.+++++ .+
T Consensus 4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799--68871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEECCCCCCCC-CCHHHCCCCCC----------------CCC----HHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 88826887776-54776037799----------------999----9999999998599188984005875322389998
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPLS----------------QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSN 1122 (1232)
Q Consensus 1064 ~iIpQdP~LF~-gTIR~NLdp~~----------------~~s----d~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~n 1122 (1232)
+++||+|.+|. -||++|+-... ... .+++.+.++..++.+.... ...+
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~ 150 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR-----------KAGE 150 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTS-----------BGGG
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCC-----------CHHH
T ss_conf 72577642478874232143013330345045665421353289999999999876196302059-----------5356
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHH-CCEEEEEECCEEEE
Q ss_conf 89369999999998705998899866677989997999999999855-99389998449235640-18699995987977
Q 000904 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1123 LS~GQRQll~LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHrl~tI~~-~DrVlVL~~G~ivE 1200 (1232)
||||||||++|||||+.+|++|+|||||++||+.+...+.+.|++.. +++|||+|+||++.+.. ||||+||++|++++
T Consensus 151 LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~ 230 (254)
T d1g6ha_ 151 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 230 (254)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 99188889999999975927232439765699999999999999999789989999476999998699999996998999
Q ss_pred ECCHHHHHHH
Q ss_conf 3691478720
Q 000904 1201 YDEPMKLMKR 1210 (1232)
Q Consensus 1201 ~g~p~~Ll~~ 1210 (1232)
.|+|+++.++
T Consensus 231 ~g~~~e~~~~ 240 (254)
T d1g6ha_ 231 EGRGEEEIKN 240 (254)
T ss_dssp EEESHHHHHH
T ss_pred EECHHHHHHC
T ss_conf 9668998654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5.2e-40 Score=328.47 Aligned_cols=215 Identities=24% Similarity=0.398 Sum_probs=181.4
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 89983476755999930000018995893999987999986889999814656885289999961799896766301788
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
+++ ++.-+|.. ..+ |+||+++ +|.++|+|+||||||||+++|.|+++|++|+|.++|.|++.++.. |+++++
T Consensus 3 l~v-~~~k~~g~---~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGN---FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETT---EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECC---EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-99999899---999-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred ECCCCCCCCC-CHHHCCCC-CCCCC----HHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8268877765-47760377-99999----999999999859918898400587532238999889369999999998705
Q 000904 1066 IPQDPTLFNG-TVRYNLDP-LSQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1066 IpQdP~LF~g-TIR~NLdp-~~~~s----d~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr 1139 (1232)
+||+|.+|.. ||++|+.. ....+ ++.+.++++.+++.+.....| ..||||||||++|||||+.
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----------~~LSGG~kQRvaiAral~~ 143 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----------ARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----------GGSCHHHHHHHHHHHHHTT
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHHHHC
T ss_conf 52314435220155766653233677889999999998638375665794-----------4489999899999877751
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHHCCCHHH
Q ss_conf 998899866677989997999999999855--99389998449235640-186999959879773691478720397899
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLFG 1216 (1232)
Q Consensus 1140 ~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHrl~tI~~-~DrVlVL~~G~ivE~g~p~~Ll~~~~s~F~ 1216 (1232)
+|++|+|||||+++|+.+...+.+.|++.. .+.|+|+|+|+++.+.. ||||++|++|++++.|+|++++++++..-+
T Consensus 144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~ 223 (240)
T d2onka1 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHH
T ss_conf 67706752865558879999999999999874397699981899999996999999989999999069998329988999
Q ss_pred HHH
Q ss_conf 999
Q 000904 1217 QLV 1219 (1232)
Q Consensus 1217 ~lv 1219 (1232)
+++
T Consensus 224 ~fl 226 (240)
T d2onka1 224 EFL 226 (240)
T ss_dssp HHG
T ss_pred HHH
T ss_conf 985
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.6e-37 Score=303.54 Aligned_cols=209 Identities=19% Similarity=0.267 Sum_probs=181.5
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 18998347675599993000001899589399998799998688999981465688528999996179989676630178
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
-++++|++.+| .|++|||+|++||.+||+|+||||||||+++|.|+. |.+|+|.++|.|+...+.+.++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCC-CCCCCHHHCCCCCC--CCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--
Q ss_conf 8826887-77654776037799--999999999999859918898400587532238999889369999999998705--
Q 000904 1065 IIPQDPT-LFNGTVRYNLDPLS--QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR-- 1139 (1232)
Q Consensus 1065 iIpQdP~-LF~gTIR~NLdp~~--~~sd~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr-- 1139 (1232)
+++|++. .|..++.+++.... ....+.+.++++.+++.+... ....+||||||||++||||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTT-----------SBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHC-----------CCHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 451213577442098876410014668999999998659876767-----------684456998899999999998517
Q ss_pred -----CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHHC
Q ss_conf -----99889986667798999799999999985-599389998449235640-1869999598797736914787203
Q 000904 1140 -----RSRILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1140 -----~~~ILILDEaTsslD~~Td~~Iq~~Ir~~-f~~~TVI~IAHrl~tI~~-~DrVlVL~~G~ivE~g~p~~Ll~~~ 1211 (1232)
+|+||+|||||++||+.+...+.+.|++. -.++|||+++|+++.+.+ ||||++|++|++++.|+|+++++++
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 1338998899971877778989999999999999867999999967799999979999999799899988999981886
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.3e-33 Score=277.95 Aligned_cols=188 Identities=24% Similarity=0.412 Sum_probs=156.9
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 18998347675599993000001899589399998799998688999981465688528999996179989676630178
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|. . ++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+ .|.+++
T Consensus 2 ~lev~~ls~~y~--~-~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS--S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred EEEEEEEEEEEC--C-EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCEE
T ss_conf 599998999939--9-28842088985998999999999719999999966205677889999896267-----367089
Q ss_pred EECCCCCCCCC-CHHHCCCC----CC-CCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 88268877765-47760377----99-99999999999985991889840058753223899988936999999999870
Q 000904 1065 IIPQDPTLFNG-TVRYNLDP----LS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL 1138 (1232)
Q Consensus 1065 iIpQdP~LF~g-TIR~NLdp----~~-~~sd~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALL 1138 (1232)
++||++.++.. |+++|+.. ++ ..++++++++++.+++.+ ++..+ .+||+|||||++||||++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL----GELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG----GGSCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCC----CCCCCCHHHHHHHHHHHH
T ss_conf 995013578882899999999975488637999999998748856--------30126----868971888899999886
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC--EEEEEECCHHHHHHCCEEEEEEC
Q ss_conf 5998899866677989997999999999855993--89998449235640186999959
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEFADC--TVITVAHRIPTVMDCTMVLAISD 1195 (1232)
Q Consensus 1139 r~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~--TVI~IAHrl~tI~~~DrVlVL~~ 1195 (1232)
++|++++|||||+++|.++...+.+.|++..++. ++|+..|++ .-||++.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l---~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL---SYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC---TTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECHH---HHCCHHHHEEE
T ss_conf 499899986862016999999999999999867999999991625---44161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=8e-21 Score=177.11 Aligned_cols=305 Identities=11% Similarity=0.077 Sum_probs=247.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998898999999999999999899999999998715887775048999999999999999999999999999999999
Q 000904 304 IIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVR 383 (1232)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~la~~l~~~~~~~~~~~~~~~~~~~~~g~riR 383 (1232)
..+.+++.++...++.++..++....|++++.+++..-.+.. ...-+.+++.+++..++..++.....+...+.+.++.
T Consensus 10 ~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (319)
T d3b60a2 10 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD-RSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVV 88 (319)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT-HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999999999999999999998744687-7899999999999999764533546654434310001
Q ss_pred HHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999971583222036884467789997899996798998-9999999999999999999997999999999999
Q 000904 384 SLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWF-HQIWTTSVQLCIALIILFHAVGLATIAALVVIMI 462 (1232)
Q Consensus 384 ~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~-~~~w~~plqi~ial~~L~~~lG~~~l~gl~~~~i 462 (1232)
..+...+|+|.++.+....+++++|+++|.++.|++.+.+..... .......+.++.++++++..-...+++.++.+++
T Consensus 89 ~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~ 168 (319)
T d3b60a2 89 MTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPI 168 (319)
T ss_dssp HHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 10004777765010111102333221111121212100001111120011233445668888876520021025668999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99988999999999999999999999999999995669999830069999999999999999999999999999999867
Q 000904 463 TVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWS 542 (1232)
Q Consensus 463 ~~~~~~~~a~~~~~~q~~~m~~~D~R~~~~~E~L~~ik~IK~~awE~~f~~~I~~~R~~E~~~l~~~~~~~~~~~~~~~~ 542 (1232)
...+.....++..+.+++..+..++..+..+|.++|++++|.+++|+.+.++..+..++..+...+.....+........
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (319)
T d3b60a2 169 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 248 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99988766668778789887644567788777624872353111010245666665313567788888777740640100
Q ss_pred HHHHHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 669999--9999999870887670259789999999999999869999999999999999999717987
Q 000904 543 SPVLVS--TATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPE 609 (1232)
Q Consensus 543 ~p~lv~--~~tF~~~~l~g~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e 609 (1232)
.+.+.. +..+|.+....+.+|+|.+++.+.+...+..|+..++..++.+.++++|.+|+.++|+.|+
T Consensus 249 ~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 249 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 000023799999999998099789999999999999999999999999999999999999999966998
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.92 E-value=1.1e-20 Score=176.04 Aligned_cols=306 Identities=17% Similarity=0.169 Sum_probs=247.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999988989999999999999998999999999987158877750----4--8999999999999999999999999999
Q 000904 304 IIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKY----E--GYVLAITLFVAKILESLSQRQWYFRSRL 377 (1232)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~----~--g~~la~~l~~~~~~~~~~~~~~~~~~~~ 377 (1232)
..|.|++.++...++.++..++....|++++.+++.+.+++.... . .+.++.++++..++..+......+...+
T Consensus 8 ~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (323)
T d2hyda2 8 FVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQW 87 (323)
T ss_dssp HHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999986267742155689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999715832220368844677899978999967989-989999999999999999999997999999
Q 000904 378 IGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAA 456 (1232)
Q Consensus 378 ~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~~~~w~~plqi~ial~~L~~~lG~~~l~g 456 (1232)
.+.+++..+...+|+|.++++....+++++|+++|.++.|++.+.++.. .+...+...+.+++++.+++..-...++..
T Consensus 88 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~ 167 (323)
T d2hyda2 88 TSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAA 167 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99855677888876654023321000122211000111133210011134542011146653346544000014688899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999988999999999999999999999999999995669999830069999999999999999999999999999
Q 000904 457 LVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1232)
Q Consensus 457 l~~~~i~~~~~~~~a~~~~~~q~~~m~~~D~R~~~~~E~L~~ik~IK~~awE~~f~~~I~~~R~~E~~~l~~~~~~~~~~ 536 (1232)
++..++...+...+.++..+.+++..+..++..+.++|.++|+|+||.+++|+.+.++..+..++..+...|.....+..
T Consensus 168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 247 (323)
T d2hyda2 168 LFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYS 247 (323)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 99887777777641233320267789899999978788755970234676411100233022311110156776520000
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999867669999--9999999870887670259789999999999999869999999999999999999717987
Q 000904 537 TFLFWSSPVLVS--TATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPE 609 (1232)
Q Consensus 537 ~~~~~~~p~lv~--~~tF~~~~l~g~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e 609 (1232)
.........+.. ...++.+....+.+++|.+++.+.++..+..|+..++..+..+.++++|++||.++|++|+
T Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 248 FAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 111110120558999999999998499889999999999999999999999999999999999999999977999
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.77 E-value=1.8e-14 Score=126.96 Aligned_cols=260 Identities=12% Similarity=0.114 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999998719646448888879999999648786523046799999
Q 000904 708 IVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAV 787 (1232)
Q Consensus 708 ~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~p~GrilnR~s~D~~~id~~~~~~l~~~~ 787 (1232)
..++.++.+...++...+.+.....+.+...+++.++++++++.|+.+|+.++.|++++|+++|.+.+...+.......+
T Consensus 59 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~ 138 (319)
T d3b60a2 59 PLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVV 138 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 99999999976453354665443431000110004777765010111102333221111121212100001111120011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99999999999999998999999987999999999999999999999861216899999999981117886613089999
Q 000904 788 GATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFF 867 (1232)
Q Consensus 788 ~~~~~~~~~i~v~~~~~~~~~l~~~pl~~l~~~~~~~y~~~~rel~rl~~~~~s~i~~~~~Etl~G~~tIraf~~~~~f~ 867 (1232)
......+..+..+....|.+.++.....++.......+.+..++..+......+...++..|.+.|..+||+++.++.+.
T Consensus 139 ~~~~~~i~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~ 218 (319)
T d3b60a2 139 REGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVET 218 (319)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHH
T ss_conf 23344566888887652002102566899999988766668778789887644567788777624872353111010245
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998971079157899999999999999999999999999-9866999766679999999999987999999999999
Q 000904 868 AKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFC-MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCT 946 (1232)
Q Consensus 868 ~~~~~~id~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~v~~~~g~~~~g~~gl~lsy~~~l~~~l~~~i~~~~~ 946 (1232)
+++.+..++..+...+......+................... ......|.+++|.....+.|...+..++........+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~ 298 (319)
T d3b60a2 219 KRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQ 298 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66666531356778888877774064010000002379999999999809978999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999997420589999
Q 000904 947 LANYIISVERLNQYMHVPSEA 967 (1232)
Q Consensus 947 ~e~~~~sveRi~~~~~~~~e~ 967 (1232)
..+...+.+|+.++.+.|+|+
T Consensus 299 ~~~~~~s~~Ri~elld~~~E~ 319 (319)
T d3b60a2 299 FQRGMAACQTLFAILDSEQEK 319 (319)
T ss_dssp HHHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999996699899
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.74 E-value=8e-15 Score=129.79 Aligned_cols=255 Identities=16% Similarity=0.136 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999987196464488888799999996487865230467999999999
Q 000904 712 LLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATT 791 (1232)
Q Consensus 712 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~p~GrilnR~s~D~~~id~~~~~~l~~~~~~~~ 791 (1232)
..+.+...++...+.+.....+.+...+++.++++++++.|++||+..+.|++++|+++|.+.++......+...+....
T Consensus 68 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~ 147 (323)
T d2hyda2 68 FIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCI 147 (323)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHH
T ss_conf 99999999999999999999998556778888766540233210001222110001111332100111345420111466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999999999989999999879999999999999999999998612168999999999811178866130899999999
Q 000904 792 NAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNL 871 (1232)
Q Consensus 792 ~~~~~i~v~~~~~~~~~l~~~pl~~l~~~~~~~y~~~~rel~rl~~~~~s~i~~~~~Etl~G~~tIraf~~~~~f~~~~~ 871 (1232)
..+..+..+....|.+.++......+.......+.+..++..+......+...+++.|.+.|..+||+++.++.+.+++.
T Consensus 148 ~~i~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~ 227 (323)
T d2hyda2 148 TIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFD 227 (323)
T ss_dssp HHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
T ss_conf 53346544000014688899998877777776412333202677898999999787887559702346764111002330
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98971079157899999999999999999999999999-98669997666799999999999879999999999999999
Q 000904 872 DLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFC-MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANY 950 (1232)
Q Consensus 872 ~~id~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~v~~~~g~~~~g~~gl~lsy~~~l~~~l~~~i~~~~~~e~~ 950 (1232)
+..++..+...+......+.......+..........+ ......|.+++|.+...+.+...+..++........+....
T Consensus 228 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~ 307 (323)
T d2hyda2 228 KKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQS 307 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22311110156776520000111110120558999999999998499889999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 9999999742058999
Q 000904 951 IISVERLNQYMHVPSE 966 (1232)
Q Consensus 951 ~~sveRi~~~~~~~~e 966 (1232)
..+.||+.++.+.++|
T Consensus 308 ~~s~~Ri~elLd~e~e 323 (323)
T d2hyda2 308 FASMDRVFQLIDEDYD 323 (323)
T ss_dssp HHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999999999779998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.52 E-value=1.6e-15 Score=135.26 Aligned_cols=172 Identities=10% Similarity=0.012 Sum_probs=117.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCCCCCCCCCHHHHH
Q ss_conf 39999879999868899998146568852899999617998967663017888268877765477603779999999999
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIW 1093 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NLdp~~~~sd~eI~ 1093 (1232)
-||+|+|++|||||||++.+.|.+++..|.+.+++.+....+.+.........++.+.++..+...+....+...+.+
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQ-- 78 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHH--
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--
T ss_conf 989999899938999999998148888646998771328888765311233667778875411345544302303762--
Q ss_pred HHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCC
Q ss_conf 9999859918898400587532238999889369999999998705998899866677989--99799999999985599
Q 000904 1094 EVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID--NATDMILQKTIRAEFAD 1171 (1232)
Q Consensus 1094 ~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~ILILDEaTsslD--~~Td~~Iq~~Ir~~f~~ 1171 (1232)
...+++|++++.++++++.++|+++++|||+...+ .+....+.+.+++ .+
T Consensus 79 --------------------------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~ 130 (178)
T d1ye8a1 79 --------------------------YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PN 130 (178)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TT
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCC--CC
T ss_conf --------------------------56653201378999999740997423027773100457999999987505--79
Q ss_pred CEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHH
Q ss_conf 3899984492356401869999598797736914787203978999999
Q 000904 1172 CTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1172 ~TVI~IAHrl~tI~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~F~~lv~ 1220 (1232)
+|+|.++|+......+|++..+++|++++.++. +.+.++...++
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~-----nrd~~~~~i~~ 174 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE-----NRDVILEDILS 174 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCTT-----TTTTHHHHHHH
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECCC-----CHHHHHHHHHH
T ss_conf 789999744778986365998719999998996-----47889999999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.1e-12 Score=112.78 Aligned_cols=67 Identities=25% Similarity=0.492 Sum_probs=61.0
Q ss_pred CCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 7530899843898248999884010177861898389970355546889998871087765543221
Q 000904 624 VNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690 (1232)
Q Consensus 624 ~~~~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~ 690 (1232)
.++.|+++|++|+|+.+++.++|+|+||+|++||.++|+|++|||||||+++|+|.+++.+|.|..+
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~ 74 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLD 74 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 5336999998998899999976744389984998999999999849999999861437876899889
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=2.7e-12 Score=109.82 Aligned_cols=63 Identities=30% Similarity=0.479 Sum_probs=57.5
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 0899843898248999884010177861898389970355546889998871087765543221
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690 (1232)
Q Consensus 627 ~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~ 690 (1232)
.|+++|++|+|+.+ .+++|+||||+|++|++++|+|++|||||||+++|+|.+++.+|+|..+
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 63 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID 63 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 92999999990899-9603742489984999999999999989999999973578888899999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.26 E-value=6.6e-12 Score=106.76 Aligned_cols=66 Identities=30% Similarity=0.535 Sum_probs=59.4
Q ss_pred CCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 7530899843898248999884010177861898389970355546889998871087765543221
Q 000904 624 VNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690 (1232)
Q Consensus 624 ~~~~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~ 690 (1232)
..+.|+++|++|+|+.+ +.++|+||||+|++|+.+||+|++|||||||+++|+|.+++.+|+|..+
T Consensus 10 ~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 75 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMD 75 (253)
T ss_dssp CCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEET
T ss_pred CCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 83079999889992999-9763533289985999999999999859999999862168884689878
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.26 E-value=5.8e-12 Score=107.20 Aligned_cols=62 Identities=29% Similarity=0.544 Sum_probs=56.8
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 0899843898248999884010177861898389970355546889998871087765543221
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690 (1232)
Q Consensus 627 ~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~ 690 (1232)
.|+++|++|+|+.+ +++|+||||++++|++++|+|++|||||||+++|+|.++|.+|+|..+
T Consensus 1 mle~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 62 (242)
T d1mv5a_ 1 MLSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62 (242)
T ss_dssp CEEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEET
T ss_pred CEEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 97999889987999--841422589985999999999999979999999999609898779889
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.26 E-value=5.6e-12 Score=107.34 Aligned_cols=66 Identities=33% Similarity=0.532 Sum_probs=59.7
Q ss_pred CCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 7530899843898248999884010177861898389970355546889998871087765543221
Q 000904 624 VNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690 (1232)
Q Consensus 624 ~~~~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~ 690 (1232)
.++.|+++|++|+|+.+ +.++|+||||+|++|++++|+|++|||||||+++|+|.+++.+|+|..+
T Consensus 13 ~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 78 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILID 78 (255)
T ss_dssp CSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEET
T ss_pred CCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 78879999889995999-9760644389983998999988999809999999971278630001539
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.24 E-value=3.2e-11 Score=101.39 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHCCEEEEE
Q ss_conf 98893699999999987----05998899866677989997999999999855-993899984492356401869999
Q 000904 1121 SNWSMGQRQLFCLGRAL----LRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMDCTMVLAI 1193 (1232)
Q Consensus 1121 ~nLS~GQRQll~LARAL----Lr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHrl~tI~~~DrVlVL 1193 (1232)
..+|||||.+++||-.+ ..+++|++||||++++|..+...+.+.|++.. .+.-+|+|||+..+...+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.12 E-value=4.1e-11 Score=100.47 Aligned_cols=170 Identities=25% Similarity=0.283 Sum_probs=100.3
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC-----------
Q ss_conf 308998438982489998840101778618983899703555468899988710877655432211000-----------
Q 000904 626 HVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLA----------- 694 (1232)
Q Consensus 626 ~~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~~wl~----------- 694 (1232)
..|+++|++++|+. ..+|+||||+|++||.++++|++|||||||+++|.|.+++++|+|..+....
T Consensus 2 ~~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 78 (240)
T d1g2912 2 AGVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78 (240)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG
T ss_pred CCEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCC
T ss_conf 81899869999899---999856066886998999999999809999999964878898989999998035664442453
Q ss_pred ------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf ------14468886235899999999999999999999999999999999999999999871964644888887999999
Q 000904 695 ------ANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRV 768 (1232)
Q Consensus 695 ------~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~p~GrilnR~ 768 (1232)
...+++.... .+.++--+.+.... ...+..++-.|+
T Consensus 79 ~~r~ig~v~Q~~~L~~--~ltV~eni~~~~~~------------------------------------~~~~~~e~~~~v 120 (240)
T d1g2912 79 KDRDIAMVFQSYALYP--HMTVYDNIAFPLKL------------------------------------RKVPRQEIDQRV 120 (240)
T ss_dssp GGSSEEEECSCCCCCT--TSCHHHHHHHHHHH------------------------------------TTCCHHHHHHHH
T ss_pred CCCCCEECCCCHHHCC--HHHHHHHHHHHHHH------------------------------------CCCCHHHHHHHH
T ss_conf 2255120022122231--01166763306877------------------------------------299989999999
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 964878652-----304679999999999999999999998999999987999999999999999999999861216
Q 000904 769 SSDLSIVDL-----DVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTK 840 (1232)
Q Consensus 769 s~D~~~id~-----~~~~~l~~~~~~~~~~~~~i~v~~~~~~~~~l~~~pl~~l~~~~~~~y~~~~rel~rl~~~~~ 840 (1232)
..-+..++. ..|.. +++.-..-..++-.....|.+++++.|...++...+.......+++.+..+.+-
T Consensus 121 ~~~l~~~~l~~~~~~~p~~----LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tv 193 (240)
T d1g2912 121 REVAELLGLTELLNRKPRE----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTT 193 (240)
T ss_dssp HHHHHHHTCGGGTTCCGGG----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHCCCHHHHCCCHHH----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9999875996676299334----999999999999998269988982588765698999899999999986369889
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=1.2e-10 Score=96.82 Aligned_cols=60 Identities=30% Similarity=0.542 Sum_probs=55.6
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 899843898248999884010177861898389970355546889998871087765543221
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690 (1232)
Q Consensus 628 I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~ 690 (1232)
|+++|++++|+. ..+|+||||+|++||.++++||+|||||||+++|.|..++.+|+|..+
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~ 60 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEES
T ss_pred CEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 999999999899---999811177886998999998999829999999965878888889999
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.07 E-value=1.2e-10 Score=96.85 Aligned_cols=60 Identities=30% Similarity=0.529 Sum_probs=55.6
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 0899843898248999884010177861898389970355546889998871087765543221
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690 (1232)
Q Consensus 627 ~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~ 690 (1232)
.|+++|.+++|+ +++|+|+||++++|+.++++|++|||||||+++|.|.++|.+|+|..+
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~ 61 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 61 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 599998999939----928842088985998999999999719999999966205677889999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.06 E-value=1.6e-10 Score=95.93 Aligned_cols=64 Identities=33% Similarity=0.501 Sum_probs=58.5
Q ss_pred CCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 7530899843898248999884010177861898389970355546889998871087765543221
Q 000904 624 VNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690 (1232)
Q Consensus 624 ~~~~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~ 690 (1232)
++..++++|.+++|+. ..+|+||||+|++||.++++||+|||||||+++|.|.+++++|+|..+
T Consensus 3 sd~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~ 66 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66 (240)
T ss_dssp CSEEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCEEEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 5607999618999899---888830257888997999999999859999999967888880389842
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.05 E-value=1.2e-10 Score=96.87 Aligned_cols=64 Identities=28% Similarity=0.451 Sum_probs=56.5
Q ss_pred EEEEEEEEEEECCCCC-CCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 0899843898248999-884010177861898389970355546889998871087765543221
Q 000904 627 VISIKSASFSWEESSS-KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690 (1232)
Q Consensus 627 ~I~i~~~sf~w~~~~~-~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~ 690 (1232)
.|+++|++++|+.... ..+|+|+||+|++||.++|+|++|||||||+++|.|..++++|+|..+
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~ 65 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID 65 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEEC
T ss_conf 98999079994899820898713377884997999988999982165575068877776626999
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=1.8e-10 Score=95.40 Aligned_cols=64 Identities=27% Similarity=0.434 Sum_probs=56.7
Q ss_pred EEEEEEEEEEECCCCC-CCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 0899843898248999-884010177861898389970355546889998871087765543221
Q 000904 627 VISIKSASFSWEESSS-KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690 (1232)
Q Consensus 627 ~I~i~~~sf~w~~~~~-~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~ 690 (1232)
.|+++|++++|+.+.. ..+|+|+||+|++||.++|+|++|||||||+++|.|..++++|+|..+
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~ 65 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVD 65 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEC
T ss_conf 97998279996999814898615057886997999989998988899998758863667732886
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.04 E-value=2.1e-10 Score=94.89 Aligned_cols=60 Identities=27% Similarity=0.418 Sum_probs=55.8
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 089984389824899988401017786189838997035554688999887108776554322
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 627 ~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~ 689 (1232)
.|+++|.+++|+. .++|+||||+|++||.++|+|++|||||||+++|.|..++++|+|..
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~ 61 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 61 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE
T ss_conf 6999978999899---99881506688699799999899982999999997476678997799
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=2.1e-10 Score=94.86 Aligned_cols=61 Identities=23% Similarity=0.366 Sum_probs=56.8
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 3089984389824899988401017786189838997035554688999887108776554322
Q 000904 626 HVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 626 ~~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~ 689 (1232)
++|+++|.+.+|+. +++|+|+||+|++||.++++|++|||||||+++|.|.+++.+|+|..
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i 61 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 61 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 97899958999999---99980625688489799999999999999999996698878887999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.03 E-value=2.5e-10 Score=94.28 Aligned_cols=62 Identities=21% Similarity=0.368 Sum_probs=56.8
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 30899843898248999884010177861898389970355546889998871087765543221
Q 000904 626 HVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690 (1232)
Q Consensus 626 ~~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~ 690 (1232)
..|+++|.+++|+. ..+|+|+||+|++||.++++|++|||||||+++|.|.+++++|+|..+
T Consensus 5 ~~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~ 66 (239)
T d1v43a3 5 VEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 66 (239)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred CEEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 74999879999999---999813067887998999999999829999999975899987879991
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=4.6e-10 Score=92.25 Aligned_cols=64 Identities=33% Similarity=0.613 Sum_probs=52.5
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 308998438982489998840101778618983899703555468899988710877655432211000
Q 000904 626 HVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLA 694 (1232)
Q Consensus 626 ~~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~~wl~ 694 (1232)
..|+++|.+| + .+|+|+|+||+|++|+.++|+|++|||||||+++|+|++++.+|.|..+.-+.
T Consensus 37 ~~i~~~~~~~--~---g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~ 100 (281)
T d1r0wa_ 37 NNVSFSHLCL--V---GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVS 100 (281)
T ss_dssp ---CHHHHHH--T---TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEE
T ss_pred CCEEEEECCC--C---CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEE
T ss_conf 9679997698--9---97677375999859999999989998299999999579747882899999999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=1.2e-08 Score=81.13 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEE--EEC
Q ss_conf 8893699999999987----0599889986667798999799999999985599389998449235640186999--959
Q 000904 1122 NWSMGQRQLFCLGRAL----LRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLA--ISD 1195 (1232)
Q Consensus 1122 nLS~GQRQll~LARAL----Lr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHrl~tI~~~DrVlV--L~~ 1195 (1232)
.+|.|||++..++..+ ..+++++++|||-+++++.....+.+.|++..++.-+|++||+..++..+|++.. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C--EEEE
Q ss_conf 8--7977
Q 000904 1196 G--KLAE 1200 (1232)
Q Consensus 1196 G--~ivE 1200 (1232)
| +|++
T Consensus 299 g~s~i~~ 305 (308)
T d1e69a_ 299 GVSAIVP 305 (308)
T ss_dssp SCEEEEE
T ss_pred CEEEEEE
T ss_conf 9999999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.01 E-value=3.3e-10 Score=93.36 Aligned_cols=60 Identities=35% Similarity=0.551 Sum_probs=55.1
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 0899843898248999884010177861898389970355546889998871087765543221
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690 (1232)
Q Consensus 627 ~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~ 690 (1232)
.|+++|.+++|+. .+|+||||+|++||.++++||+|||||||+++|.|.+++++|+|..+
T Consensus 1 mi~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~ 60 (229)
T d3d31a2 1 MIEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60 (229)
T ss_dssp CEEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEET
T ss_pred CEEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 9899989999499----78843378987998999998999829999999964768887889995
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.00 E-value=2.3e-10 Score=94.61 Aligned_cols=62 Identities=23% Similarity=0.424 Sum_probs=56.5
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 089984389824899988401017786189838997035554688999887108776554322
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 627 ~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~ 689 (1232)
.|+++|++++|+.. +..+|+||||+|++||.++|+|++|||||||+++|.|..++++|+|..
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~ 64 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 89997579998899-989980407898799899999899980999999997586888745999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.97 E-value=4.4e-10 Score=92.38 Aligned_cols=61 Identities=26% Similarity=0.404 Sum_probs=56.4
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 3089984389824899988401017786189838997035554688999887108776554322
Q 000904 626 HVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 626 ~~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~ 689 (1232)
..++++|++.+|+. .++|+||||++++||.++++|++|||||||+++|.|.+++++|+|..
T Consensus 3 ~iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~ 63 (254)
T d1g6ha_ 3 EILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 63 (254)
T ss_dssp EEEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CEEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 66999778999799---68871217998899799999999984999999997797688737999
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=2.9e-08 Score=78.04 Aligned_cols=55 Identities=35% Similarity=0.510 Sum_probs=47.9
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 308998438982489998840101778618983899703555468899988710877655432
Q 000904 626 HVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 626 ~~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~ 688 (1232)
..++++|++.+ ..|+||||+|++||.++++|++|||||||+++|.|.. +.+|+|.
T Consensus 2 ~il~~~dv~~~-------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~ 56 (231)
T d1l7vc_ 2 IVMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQ 56 (231)
T ss_dssp EEEEEEEECCT-------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEE
T ss_pred EEEEEECCCCC-------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEE
T ss_conf 59999874157-------1555888899489899999899980999999994887-9955999
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.24 E-value=1.2e-06 Score=65.19 Aligned_cols=173 Identities=16% Similarity=0.178 Sum_probs=92.6
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC-----------CC
Q ss_conf 8998438982489998840101778618983899703555468899988710877655432211000-----------14
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLA-----------AN 696 (1232)
Q Consensus 628 I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~~wl~-----------~~ 696 (1232)
+++ ++..+++. ..+ |+||+++ |+.++++||+|||||||+++|.|.+++.+|+|..+..-. +.
T Consensus 3 l~v-~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v 75 (240)
T d2onka1 3 LKV-RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp EEE-EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEE-EEEEEECC----EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEE
T ss_conf 999-99999899----999-9999749-9799999799980999999997399989628999999988699899285225
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 46888623589999999999999999999999999999999999999999987196464488888799999996487865
Q 000904 697 VENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVD 776 (1232)
Q Consensus 697 ~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~p~GrilnR~s~D~~~id 776 (1232)
.+++..-+ .+.++--+.+ ++ ...+..+.-.|+..-+..++
T Consensus 76 ~Q~~~l~~--~ltV~enl~~-----------------------------------~l---~~~~~~~~~~~v~~~l~~~g 115 (240)
T d2onka1 76 PQDYALFP--HLSVYRNIAY-----------------------------------GL---RNVERVERDRRVREMAEKLG 115 (240)
T ss_dssp CSSCCCCT--TSCHHHHHHT-----------------------------------TC---TTSCHHHHHHHHHHHHHTTT
T ss_pred CCCHHHCC--CCHHHHHHHH-----------------------------------HH---CCCCHHHHHHHHHHHHHHCC
T ss_conf 23144352--2015576665-----------------------------------32---33677889999999998638
Q ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2-----30467999999999999999999999899999998799999999999999999999986121689999999998
Q 000904 777 L-----DVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESI 851 (1232)
Q Consensus 777 ~-----~~~~~l~~~~~~~~~~~~~i~v~~~~~~~~~l~~~pl~~l~~~~~~~y~~~~rel~rl~~~~~s~i~~~~~Etl 851 (1232)
. ..|.. +++.-..-..++-.....|.+++++.|...++...+.......+++.+..+.+--.+.|...|..
T Consensus 116 l~~~~~~~~~~----LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~ 191 (240)
T d2onka1 116 IAHLLDRKPAR----LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191 (240)
T ss_dssp CTTTTTCCGGG----SCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHH
T ss_pred CHHHHHCCHHH----CCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 37566579444----89999899999877751677067528655588799999999999998743976999818999999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=96.86 E-value=0.00022 Score=47.43 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=28.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 8389970355546889998871087765543
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v 687 (1232)
.+++|+||+|||||||+++|+|++++..|.+
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~ 31 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGF 31 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCEE
T ss_conf 9899998999389999999981488886469
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.014 Score=33.15 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=24.7
Q ss_pred CCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 300000189958939999879999868899998146
Q 000904 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1001 ~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl 1036 (1232)
.++.| +.+|+.+.|+|++|+|||||+..|.--
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ 52 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQ 52 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 98689----558958999928999899999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=2.7e-05 Score=54.56 Aligned_cols=160 Identities=14% Similarity=0.069 Sum_probs=79.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCCCCC------CCC-
Q ss_conf 9999879999868899998146568852899999617998967663017888268877765477603779------999-
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPL------SQH- 1087 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NLdp~------~~~- 1087 (1232)
.|.|+|+.|+|||||++.+.+.+...++.+.+.+.+........+.....-+.|+...+.....++.... ...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVV 82 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99998899971999999999999977997999984550122211465412343302466543001034441432231100
Q ss_pred CHHHHHHHHHHCCCCHHHHH-HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999998599188984-00587532238999889369999999998705998899866677989997999999999
Q 000904 1088 TDQEIWEVLAKCHLGEAVRE-KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR 1166 (1232)
Q Consensus 1088 sd~eI~~aL~~~~L~~~i~~-~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir 1166 (1232)
..+++.+. ....+. .+.. ...+.+..+.+.....+......+.+.+.++..++++++...+..-+... .+.+.++
T Consensus 83 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (189)
T d2i3ba1 83 DLTSFEQL-ALPVLR-NADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL--ALVEEIR 158 (189)
T ss_dssp CHHHHHTT-TTTTTC-CCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCC--TTHHHHH
T ss_pred CHHHHHHH-HHHHHH-HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHHHH
T ss_conf 37777778-899999-9988762189706861433330535999999999854686599961555775569--9999986
Q ss_pred HHCCCCEEEEEEC
Q ss_conf 8559938999844
Q 000904 1167 AEFADCTVITVAH 1179 (1232)
Q Consensus 1167 ~~f~~~TVI~IAH 1179 (1232)
+ .++.+++.++.
T Consensus 159 ~-~~~~~~~~lt~ 170 (189)
T d2i3ba1 159 N-RKDVKVFNVTK 170 (189)
T ss_dssp T-TCCSEEEECCS
T ss_pred C-CCCCEEEEECH
T ss_conf 7-89974999786
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.82 E-value=0.009 Score=34.68 Aligned_cols=169 Identities=11% Similarity=0.094 Sum_probs=75.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCEEEECCEECCCCCHHHHHCCE-EEECCCCCCCCCCHHHCCCCCCCC
Q ss_conf 9589399998799998688999981465-68852899999617998967663017-888268877765477603779999
Q 000904 1010 FEGGHKIGIVGRTGSGKTTLIGALFRLV-EPAGGKILVDGIDISKLGLHDLRSRF-GIIPQDPTLFNGTVRYNLDPLSQH 1087 (1232)
Q Consensus 1010 I~~GekigIVGrTGSGKSTLi~~L~rl~-ep~~G~I~IDG~dI~~i~l~~LR~~i-~iIpQdP~LF~gTIR~NLdp~~~~ 1087 (1232)
+.+|+.+.|.|++|+||||++.-+..-+ .-.+-.+.+-. .+.+.++...|+ +...+-+.--
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s---~E~~~~~~~~r~~~~~~~~~~~~-------------- 94 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM---LEESVEETAEDLIGLHNRVRLRQ-------------- 94 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE---SSSCHHHHHHHHHHHHTTCCGGG--------------
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE---ECCCHHHHHHHHHHHHHCCCCHH--------------
T ss_conf 7898089999479997999999999726553366345764---01111357769999864587101--------------
Q ss_pred CHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCCEEEEECCCC-----CCCH--HHH
Q ss_conf 9999999999859918898400587532238999889369999999998--705998899866677-----9899--979
Q 000904 1088 TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA--LLRRSRILVLDEATA-----SIDN--ATD 1158 (1232)
Q Consensus 1088 sd~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARA--LLr~~~ILILDEaTs-----slD~--~Td 1158 (1232)
.+..-.+.++...+.+........-.....+........+ ++...+. --.+++++++|=-+. +-+. +..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~ 172 (277)
T d1cr2a_ 95 SDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDR--LLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMI 172 (277)
T ss_dssp CHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHH--HHHHHHHHHHTTCCSEEEEEEEEC----------CHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH--HHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHH
T ss_conf 0122222145677888988740352146621433106899--99986543213676259970542120346544306778
Q ss_pred HHHHHHHHHHC--CCCEEEEEECCH----------------HH------H-HHCCEEEEEECCE
Q ss_conf 99999999855--993899984492----------------35------6-4018699995987
Q 000904 1159 MILQKTIRAEF--ADCTVITVAHRI----------------PT------V-MDCTMVLAISDGK 1197 (1232)
Q Consensus 1159 ~~Iq~~Ir~~f--~~~TVI~IAHrl----------------~t------I-~~~DrVlVL~~G~ 1197 (1232)
..+.+.+++.. .+|+|++++|=- +. + ..+|.|+.+...+
T Consensus 173 ~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r~~ 236 (277)
T d1cr2a_ 173 DNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQ 236 (277)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEECC-
T ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEECC
T ss_conf 9999999997650165520310356322444554333321121234300150386999998467
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.68 E-value=0.00045 Score=44.98 Aligned_cols=37 Identities=30% Similarity=0.468 Sum_probs=30.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 9589399998799998688999981465688528999
Q 000904 1010 FEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILV 1046 (1232)
Q Consensus 1010 I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~I 1046 (1232)
++.|..+.|+|+|||||||++++|++.+++..=-|.|
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9837888999403566257899986530145623311
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.27 E-value=0.032 Score=30.39 Aligned_cols=29 Identities=31% Similarity=0.316 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 89399998799998688999981465688
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFRLVEPA 1040 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~rl~ep~ 1040 (1232)
++--|.|.|+|||||||.+.++.+.....
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~~~~ 185 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQELNSS 185 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred HHCEEEEECCCCCCCCHHHHHHHHHHCCC
T ss_conf 10548987678777447799986662578
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.58 E-value=0.0061 Score=36.03 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=29.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89399998799998688999981465688528999
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILV 1046 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~I 1046 (1232)
+|+...++|.||.|||||+++|.+-.....|.|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC
T ss_conf 69808997889877888877305355501068420
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.49 E-value=0.007 Score=35.53 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998799998688999981465
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
.+=||||+|++|+|||||+++|++--
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 88889999999999999999997787
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.46 E-value=0.065 Score=27.92 Aligned_cols=88 Identities=18% Similarity=0.144 Sum_probs=49.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCCCCCCCCCHH
Q ss_conf 58939999879999868899998146568852899999617998967663017888268877765477603779999999
Q 000904 1011 EGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQ 1090 (1232)
Q Consensus 1011 ~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NLdp~~~~sd~ 1090 (1232)
+.-+-|-++|..||||||+++.++.. .|.+.|+.- +++ +-+
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~D--------~~~---------------------------~~~ 52 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNRD--------TLG---------------------------SWQ 52 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEHH--------HHC---------------------------SHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEECHH--------HHH---------------------------HHH
T ss_conf 99989999899999899999999976----597897607--------777---------------------------888
Q ss_pred HHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 9999999859918898400587532238999889369999-99999870599889986
Q 000904 1091 EIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL-FCLGRALLRRSRILVLD 1147 (1232)
Q Consensus 1091 eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQl-l~LARALLr~~~ILILD 1147 (1232)
.+.+.++. .+..|.+..+ +..|++..+|+. +.+|+-.=-+..++.+|
T Consensus 53 ~~~~~~~~--------~l~~g~~vIi--D~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 53 RCVSSCQA--------ALRQGKRVVI--DNTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHH--------HHHTTCCEEE--ESCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHH--------HHHCCCCCEE--ECCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999--------9977999555--176799999999999998558887999948
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.29 E-value=0.0067 Score=35.68 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=29.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 898389970355546889998871087765543
Q 000904 655 PGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687 (1232)
Q Consensus 655 ~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v 687 (1232)
+|+.++++|++|.|||||+++|+|+.....|.|
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCC
T ss_conf 698089978898778888773053555010684
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.28 E-value=0.037 Score=29.80 Aligned_cols=47 Identities=15% Similarity=0.367 Sum_probs=34.6
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 599889986667798999799999999985599389998449235640
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1139 r~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHrl~tI~~ 1186 (1232)
.+.+++++||+-. +..+....+.+.+.+.-..+.+|.++++.+.+.+
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~~ 176 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 176 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCH
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCHHH
T ss_conf 8724999424333-4543111221002213566430001021110025
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.24 E-value=0.075 Score=27.43 Aligned_cols=48 Identities=8% Similarity=0.191 Sum_probs=32.5
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHH
Q ss_conf 05998899866677989997999999999855--9938999844923564
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1138 Lr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f--~~~TVI~IAHrl~tI~ 1185 (1232)
..+..++++||.-.+-|++.-..+-..+-+.+ .++++++.||..+...
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 89772785545456862332002588888888623761378652023332
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.15 E-value=0.0088 Score=34.78 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=22.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 38997035554688999887108776
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVPHT 683 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~~~ 683 (1232)
.++|+|.+|+|||||+++|+|.-...
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~ 83 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEE 83 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 79998999997899999995888677
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.05 E-value=0.084 Score=27.03 Aligned_cols=47 Identities=6% Similarity=0.031 Sum_probs=30.2
Q ss_pred CCCCCEEEEECCCCCCCHHHH-HHHHHHHHHH--CCCCEEEEEECCHHHH
Q ss_conf 059988998666779899979-9999999985--5993899984492356
Q 000904 1138 LRRSRILVLDEATASIDNATD-MILQKTIRAE--FADCTVITVAHRIPTV 1184 (1232)
Q Consensus 1138 Lr~~~ILILDEaTsslD~~Td-~~Iq~~Ir~~--f~~~TVI~IAHrl~tI 1184 (1232)
..+..++++||.-.+-|++.- ......++.. ...+.+++.+|..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 54660885322235877456667898764543204544289852468776
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.90 E-value=0.0077 Score=35.23 Aligned_cols=34 Identities=32% Similarity=0.697 Sum_probs=28.6
Q ss_pred EECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 8618983899703555468899988710877655
Q 000904 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685 (1232)
Q Consensus 652 ~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G 685 (1232)
-+..|.-+.|+|+.||||||+++++++++|+..-
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~r 195 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEER 195 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCC
T ss_pred HHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 9983788899940356625789998653014562
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.86 E-value=0.011 Score=33.95 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999987999986889999814656
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRLVE 1038 (1232)
Q Consensus 1013 GekigIVGrTGSGKSTLi~~L~rl~e 1038 (1232)
|.-|.|+||+|||||||.+.|..-++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.85 E-value=0.0086 Score=34.83 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998688999981465
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
+|+++|+||+||||++++|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.78 E-value=0.0083 Score=34.94 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999868899998146
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl 1036 (1232)
+|+|+|++|+|||||+++|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.63 E-value=0.007 Score=35.56 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=23.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 999987999986889999814656885289
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ep~~G~I 1044 (1232)
-++|+|.+|||||||++.|.+-+...+-++
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v 33 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRP 33 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 899991899989999999999999779768
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.58 E-value=0.0062 Score=35.94 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=28.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89399998799998688999981465688528999
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILV 1046 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~I 1046 (1232)
+|....++|.||+|||||+++|.+-.....|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf 35649998778734878987515176764035553
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.54 E-value=0.11 Score=26.09 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=19.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 958939999879999868899998146
Q 000904 1010 FEGGHKIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1010 I~~GekigIVGrTGSGKSTLi~~L~rl 1036 (1232)
+++|.-+-|.|++|+|||++..-+..-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 869849999918999999999999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.42 E-value=0.02 Score=31.91 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=23.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 39999879999868899998146568852899999
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG 1048 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG 1048 (1232)
+-|.|+|.+||||||+++.|.+- ..|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH---CCCCEEECH
T ss_conf 79999899999999999999995---799799603
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.37 E-value=0.019 Score=32.08 Aligned_cols=30 Identities=37% Similarity=0.524 Sum_probs=24.4
Q ss_pred EEEECCCCEEEEEECCCCCHHHHHHHH---HHC
Q ss_conf 778618983899703555468899988---710
Q 000904 650 SLEVRPGQKVAICGEVGSGKSTLLAAI---LGE 679 (1232)
Q Consensus 650 nl~i~~G~~vaIvG~vGSGKSTLL~ai---lGe 679 (1232)
++.+..+.+++|+|++|||||++|.|| +|.
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~~~lg~ 51 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 51 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEECCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 975899998999999999889999999998577
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.99 E-value=0.017 Score=32.44 Aligned_cols=68 Identities=21% Similarity=0.185 Sum_probs=41.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHC--CC-CCC---CCC
Q ss_conf 999987999986889999814656885289999961799896766301788826887776547760--37-799---999
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYN--LD-PLS---QHT 1088 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~N--Ld-p~~---~~s 1088 (1232)
.|||.|.+||||||+.+.|..++.-..+. .++.+|++|.+......++. +. -++ .++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~D 144 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVLKERGLMKKKGFPESYD 144 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCCHHHHHHCCCCCCCCHHHHH
T ss_conf 99996899998768999999997304689-----------------9659995215689845888836876688167631
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999985
Q 000904 1089 DQEIWEVLAKC 1099 (1232)
Q Consensus 1089 d~eI~~aL~~~ 1099 (1232)
-+.+.+.|...
T Consensus 145 ~~~L~~~L~~l 155 (308)
T d1sq5a_ 145 MHRLVKFVSDL 155 (308)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.98 E-value=0.013 Score=33.41 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999987999986889999814656885
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVEPAG 1041 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ep~~ 1041 (1232)
-+||+|.+|||||||+..|.+.+...+
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g 29 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREG 29 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 999980999989999999999998679
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.94 E-value=0.019 Score=32.11 Aligned_cols=24 Identities=42% Similarity=0.642 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 939999879999868899998146
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1013 GekigIVGrTGSGKSTLi~~L~rl 1036 (1232)
|=||+++|++|+|||||++.|.+.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.15 Score=25.10 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=33.7
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 9889986667798999799999999985599389998449235640
Q 000904 1141 SRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1141 ~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHrl~tI~~ 1186 (1232)
.+++|+||+=. ++.+....+.+.+.+--..+.+|.++++.+-+..
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~ 160 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 160 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCH
T ss_conf 87999978110-8999999999998568988699997388563676
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.64 E-value=0.0073 Score=35.39 Aligned_cols=33 Identities=33% Similarity=0.465 Sum_probs=29.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 898389970355546889998871087765543
Q 000904 655 PGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687 (1232)
Q Consensus 655 ~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v 687 (1232)
+|..++++|++|.|||||+++|+|+.....|.|
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v 128 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 128 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCC
T ss_conf 356499987787348789875151767640355
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.63 E-value=0.017 Score=32.60 Aligned_cols=35 Identities=34% Similarity=0.489 Sum_probs=27.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8939999879999868899998146568852899999
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG 1048 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG 1048 (1232)
+|+-|.|+|++||||||+.+.|.+.... --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.60 E-value=0.021 Score=31.85 Aligned_cols=22 Identities=41% Similarity=0.437 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999868899998146
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl 1036 (1232)
.|++||++|+|||||+++|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.53 E-value=0.033 Score=30.22 Aligned_cols=42 Identities=29% Similarity=0.285 Sum_probs=31.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECCEECC
Q ss_conf 589399998799998688999981465688--528999996179
Q 000904 1011 EGGHKIGIVGRTGSGKTTLIGALFRLVEPA--GGKILVDGIDIS 1052 (1232)
Q Consensus 1011 ~~GekigIVGrTGSGKSTLi~~L~rl~ep~--~G~I~IDG~dI~ 1052 (1232)
+.|..|-+.|.+||||||+.+.|...+... .-.+.+||.++.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 99869999899999989999999988777427508997536788
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.03 Score=30.51 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=14.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 98389970355546889998871087
Q 000904 656 GQKVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 656 G~~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
|.++.|+||+||||+||.+.++-+.|
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 80999999999999999999986398
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.49 E-value=0.025 Score=31.24 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEECCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 786189838997035554688999887
Q 000904 651 LEVRPGQKVAICGEVGSGKSTLLAAIL 677 (1232)
Q Consensus 651 l~i~~G~~vaIvG~vGSGKSTLL~ail 677 (1232)
+.+.++ +++++|++||||||+|.||.
T Consensus 20 i~f~~~-lnvlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 20 IGFSDR-VTAIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EECCSS-EEEEECCTTTCSTHHHHHHH
T ss_pred EECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 967998-19999999984899999999
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.46 E-value=0.018 Score=32.28 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999868899998146
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl 1036 (1232)
.|||+|++++|||||+++|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.43 E-value=0.016 Score=32.67 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=17.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999987999986889999814656
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRLVE 1038 (1232)
Q Consensus 1013 GekigIVGrTGSGKSTLi~~L~rl~e 1038 (1232)
.-+|||+|+.|+|||||+..|.+.+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 32897438999989999999999997
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.39 E-value=0.022 Score=31.62 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=27.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 98389970355546889998871087765543
Q 000904 656 GQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687 (1232)
Q Consensus 656 G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v 687 (1232)
|.++.++||+||||||+.+.+..+.|.....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~ 33 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSV 33 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 74999989999999999999984589971798
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.38 E-value=0.023 Score=31.53 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999879999868899998146568
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVEP 1039 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ep 1039 (1232)
-|||.|++||||||+.+.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.33 E-value=0.031 Score=30.44 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999868899998146
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl 1036 (1232)
+|+++|++|+|||||++.|+|-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.32 E-value=0.031 Score=30.50 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999868899998146
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl 1036 (1232)
+|+++|++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.30 E-value=0.027 Score=30.95 Aligned_cols=43 Identities=28% Similarity=0.406 Sum_probs=28.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCC
Q ss_conf 999987999986889999814656885289999961799896766301788826887
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPT 1071 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~ 1071 (1232)
.|||.|++||||||+.+.|...+..... + ....++.+++||-+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~----~----------~~~~~~~vi~~D~y 46 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV----D----------YRQKQVVILSQDSF 46 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS----C----------GGGCSEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCC----C----------CCCCCEEEEECCCC
T ss_conf 9999899978799999999999641013----4----------57884399934653
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.29 E-value=0.032 Score=30.35 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=21.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
.++|+|.+|+|||||+++|.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.11 E-value=0.033 Score=30.19 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999868899998146
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl 1036 (1232)
.|+++|++|+|||||+++|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.08 E-value=0.19 Score=24.18 Aligned_cols=177 Identities=21% Similarity=0.257 Sum_probs=87.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCC-C-CCCCCCHH
Q ss_conf 999987999986889999814656--8852899999617998967663017888268877765477603-7-79999999
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVE--PAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL-D-PLSQHTDQ 1090 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~e--p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NL-d-p~~~~sd~ 1090 (1232)
-|+|+|..|+|||||+.+|+..-. ...|++. +|.........+..+++++-..-..+--...+-|+ | |...-=-.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~ 82 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 82 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCHHHHHH
T ss_conf 999994889809999999999709755306622-2211356269888738768751022223432106880681554335
Q ss_pred HHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE---EECCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999999859918898400587532238999889369999999998705998899---8666779899979999999998
Q 000904 1091 EIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV---LDEATASIDNATDMILQKTIRA 1167 (1232)
Q Consensus 1091 eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~ILI---LDEaTsslD~~Td~~Iq~~Ir~ 1167 (1232)
|...++..+...= .|.+.-+....+-++.+-.++. .+.|.+++ +|.+ + |.. . ..+.+++
T Consensus 83 e~~~al~~~D~av-----------lvvda~~Gv~~~t~~~~~~~~~-~~~p~~i~iNk~D~~-~--~~~--~-~l~~~~~ 144 (267)
T d2dy1a2 83 EIRGALEAADAAL-----------VAVSAEAGVQVGTERAWTVAER-LGLPRMVVVTKLDKG-G--DYY--A-LLEDLRS 144 (267)
T ss_dssp HHHHHHHHCSEEE-----------EEEETTTCSCHHHHHHHHHHHH-TTCCEEEEEECGGGC-C--CHH--H-HHHHHHH
T ss_pred HHHHHHCCCCCEE-----------EEEECCCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCCC-C--CCH--H-HHHHHHH
T ss_conf 5654312467338-----------9842357742115788776554-044310133320222-2--101--2-3446888
Q ss_pred HCCCCEEEEEECC----HHHHHH--CCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 5599389998449----235640--186999959879773691478720
Q 000904 1168 EFADCTVITVAHR----IPTVMD--CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1168 ~f~~~TVI~IAHr----l~tI~~--~DrVlVL~~G~ivE~g~p~~Ll~~ 1210 (1232)
.+..+.-+.+-.. ..-+.| ..+.+..++|.-.+..-|.++.+.
T Consensus 145 ~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~ 193 (267)
T d2dy1a2 145 TLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERER 193 (267)
T ss_dssp HHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHH
T ss_pred HHCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHHHH
T ss_conf 7465867686002588326876247654899618987454077778999
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.08 E-value=0.02 Score=31.89 Aligned_cols=21 Identities=38% Similarity=0.776 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999868899998146
Q 000904 1016 IGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1016 igIVGrTGSGKSTLi~~L~rl 1036 (1232)
|||+|++|+|||||++.|.|-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.07 E-value=0.04 Score=29.61 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 589399998799998688999981465
Q 000904 1011 EGGHKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1011 ~~GekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
++|-+|.|.|+.||||||+.+.|..-+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.07 E-value=0.031 Score=30.44 Aligned_cols=34 Identities=41% Similarity=0.531 Sum_probs=28.6
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 1898389970355546889998871087765543
Q 000904 654 RPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687 (1232)
Q Consensus 654 ~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v 687 (1232)
.++-++.|+||+||||||.+.+++.+++....+|
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i 189 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI 189 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEE
T ss_conf 4105489876787774477999866625787469
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.06 E-value=0.026 Score=31.02 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=14.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 838997035554688999887108
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
..++|+|+.|||||||.++|....
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.04 E-value=0.017 Score=32.53 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399998799998688999981465
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1013 GekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
.=+|+++|++++|||||+++|.+.-
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.00 E-value=0.039 Score=29.68 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=25.4
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 1898389970355546889998871087
Q 000904 654 RPGQKVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 654 ~~G~~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
|+|..++++|+.||||||+.+.|.-.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.88 E-value=0.18 Score=24.41 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=22.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5893999987999986889999814656
Q 000904 1011 EGGHKIGIVGRTGSGKTTLIGALFRLVE 1038 (1232)
Q Consensus 1011 ~~GekigIVGrTGSGKSTLi~~L~rl~e 1038 (1232)
++...+-+.||.|+|||++++++.+...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 9888678668998882289999999829
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.86 E-value=0.041 Score=29.49 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=24.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 898389970355546889998871087
Q 000904 655 PGQKVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 655 ~G~~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
.|+++.++|+.||||||+.+.+..+..
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.80 E-value=0.052 Score=28.68 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999987999986889999814656
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRLVE 1038 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl~e 1038 (1232)
=+|+|+|++|+|||||+++|.|.-.
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 1799989999978999999958886
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.62 E-value=0.031 Score=30.47 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998799998688999981465
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
..-||.+||++|+|||||++.|.+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 77789999999989899999996788
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.62 E-value=0.038 Score=29.71 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=24.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5893999987999986889999814656
Q 000904 1011 EGGHKIGIVGRTGSGKTTLIGALFRLVE 1038 (1232)
Q Consensus 1011 ~~GekigIVGrTGSGKSTLi~~L~rl~e 1038 (1232)
+.|-.|.++|.+||||||+.++|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.60 E-value=0.036 Score=29.93 Aligned_cols=27 Identities=48% Similarity=0.555 Sum_probs=22.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 898389970355546889998871087
Q 000904 655 PGQKVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 655 ~G~~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
.+-+|+|+|.+|+|||||+.+++|.-.
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~ 33 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKER 33 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 888899999999999999999977876
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.51 E-value=0.12 Score=25.78 Aligned_cols=21 Identities=24% Similarity=0.631 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=92.31 E-value=0.035 Score=30.02 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 38997035554688999887108776
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVPHT 683 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~~~ 683 (1232)
.++|+|+.|||||||+..|+.++...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.30 E-value=0.24 Score=23.43 Aligned_cols=40 Identities=33% Similarity=0.361 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 8939999879999868899998146568852899999617
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI 1051 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI 1051 (1232)
....+.+||+||+||||.+-=|...+.-.+.+|.+=..|.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt 50 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADV 50 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 9989999899999989999999999997799369997202
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=92.27 E-value=0.046 Score=29.12 Aligned_cols=27 Identities=44% Similarity=0.658 Sum_probs=23.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 983899703555468899988710877
Q 000904 656 GQKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 656 G~~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
|-+++++|+.|+|||||++++.|.-..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~ 27 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAA 27 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCE
T ss_conf 989999899999899999999688866
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.12 E-value=0.049 Score=28.87 Aligned_cols=23 Identities=39% Similarity=0.431 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999879999868899998146
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl 1036 (1232)
=||+|||++|+|||||++.+.+-
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 29999999998999999999679
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.12 E-value=0.25 Score=23.27 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=30.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC
Q ss_conf 89399998799998688999981465688528999996179989
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG 1055 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~ 1055 (1232)
.+..+.+||+||+||||-+-=|...+.-.+-+|.+=..|.-+.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~g 48 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAA 48 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 97799998999998899999999999977990799981366654
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.11 E-value=0.056 Score=28.41 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999987999986889999814656
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFRLVE 1038 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~rl~e 1038 (1232)
.|.-+.|+||||+||+||.+.|....+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.04 E-value=0.26 Score=23.21 Aligned_cols=43 Identities=28% Similarity=0.406 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC
Q ss_conf 8939999879999868899998146568852899999617998
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL 1054 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i 1054 (1232)
+...+.+||+||+||||-+-=|...+.-.+-+|.+=..|.-++
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~ 52 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA 52 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 9989999899999889999999999997799069996013342
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.00 E-value=0.26 Score=23.18 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=13.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399998799998688999981465
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1013 GekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
..-+-+.|+.|+|||++++++.+..
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 8757887899876304778878771
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.89 E-value=0.055 Score=28.49 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998688999981465
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
.|||+|+..+|||||+++|.+.-
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.036 Score=29.98 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=25.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 8389970355546889998871087765543
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v 687 (1232)
..+.|+|+.|+|||||++.+..++....+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 6999988999719999999999999779979
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.86 E-value=0.057 Score=28.35 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 3899703555468899988710877
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
.++++|.+|+|||||+++|+|+-..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~~ 58 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERVV 58 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCE
T ss_conf 8999899998699999998589841
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.77 E-value=0.051 Score=28.75 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=31.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 599889986667798999799999999985599389998449235640
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1139 r~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHrl~tI~~ 1186 (1232)
.+.+++++||.-. +.......+.+.+.+....+.+|.++++.+.+..
T Consensus 108 ~~~~iilide~d~-~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~ 154 (231)
T d1iqpa2 108 ASFKIIFLDEADA-LTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIE 154 (231)
T ss_dssp CSCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred CCCEEEEEHHHHH-CCHHHHHHHHHHCCCCCCCEEEEECCCCHHHCHH
T ss_conf 8722886143443-1214789876411247764478861487665657
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.75 E-value=0.058 Score=28.29 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 389970355546889998871087
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
.++|.|++||||||+.+.|.-...
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.66 E-value=0.069 Score=27.73 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999987999986889999814656
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRLVE 1038 (1232)
Q Consensus 1013 GekigIVGrTGSGKSTLi~~L~rl~e 1038 (1232)
..-|.|.|.+||||||+.+.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.61 E-value=0.061 Score=28.15 Aligned_cols=22 Identities=36% Similarity=0.369 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999868899998146
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl 1036 (1232)
||.++|+.|+|||||++.+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=91.61 E-value=0.07 Score=27.66 Aligned_cols=20 Identities=40% Similarity=0.542 Sum_probs=10.6
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 89970355546889998871
Q 000904 659 VAICGEVGSGKSTLLAAILG 678 (1232)
Q Consensus 659 vaIvG~vGSGKSTLL~ailG 678 (1232)
++|+|+.|||||||+..++.
T Consensus 3 i~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99991899839999999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.59 E-value=0.28 Score=22.85 Aligned_cols=41 Identities=37% Similarity=0.469 Sum_probs=26.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC
Q ss_conf 93999987999986889999814656885289999961799
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK 1053 (1232)
Q Consensus 1013 GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~ 1053 (1232)
-..+.+||+||+||||-+-=|...+.-.+-+|.+=..|.-+
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R 49 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 49 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 97999989999998999999999999779947998232136
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.59 E-value=0.061 Score=28.15 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=24.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 1898389970355546889998871087
Q 000904 654 RPGQKVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 654 ~~G~~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
++|..+.++|.+||||||+.++|.-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=91.56 E-value=0.0052 Score=36.54 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=18.3
Q ss_pred EEEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 000189958939999879999868899998146
Q 000904 1004 KGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1004 ~~isl~I~~GekigIVGrTGSGKSTLi~~L~rl 1036 (1232)
++.++.+.+| ...|+|+|||||||++.+|.-.
T Consensus 16 ~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 16 FARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 0279974998-0899889999879999999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.45 E-value=0.077 Score=27.35 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399998799998688999981465
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1013 GekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
..-|.|+||||+||+||++.|.+-.
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7719999989999999999999709
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.42 E-value=0.065 Score=27.91 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999868899998146
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl 1036 (1232)
||+++|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.42 E-value=0.3 Score=22.72 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9589399998799998688999981
Q 000904 1010 FEGGHKIGIVGRTGSGKTTLIGALF 1034 (1232)
Q Consensus 1010 I~~GekigIVGrTGSGKSTLi~~L~ 1034 (1232)
+++|+-+-|.|++|+|||++..-+.
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 9698399999479999999999999
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.34 E-value=0.067 Score=27.80 Aligned_cols=22 Identities=41% Similarity=0.424 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999868899998146
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl 1036 (1232)
+|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.23 E-value=0.063 Score=28.01 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=23.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 399998799998688999981465688528
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl~ep~~G~ 1043 (1232)
..|+|.|..||||||+++.|...+...+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 889998999989899999999999876998
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.18 E-value=0.092 Score=26.74 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=23.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 983899703555468899988710877
Q 000904 656 GQKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 656 G~~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
...+.++|++||||||+.++|..+++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~~ 29 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 859999899999989999999997289
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=91.10 E-value=0.07 Score=27.67 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 8389970355546889998871087
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
+++.++|+.||||||+.+.|..+.+
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~~ 27 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKNP 27 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHST
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7999989999999999999999579
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.10 E-value=0.05 Score=28.78 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=24.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 389970355546889998871087765543
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVPHTQGTI 687 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~~~~G~v 687 (1232)
.++|+|..|||||||+..++.++......+
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v 32 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRV 32 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 999980999989999999999998679837
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.09 E-value=0.07 Score=27.65 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 3899703555468899988710877
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
.|+++|+.|+|||||++.|.|.-..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~ 26 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKA 26 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC----
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 8999999999899999999677753
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.04 E-value=0.017 Score=32.56 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999868899998146
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl 1036 (1232)
||+++|++|+|||||+++|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.98 E-value=0.065 Score=27.94 Aligned_cols=24 Identities=38% Similarity=0.360 Sum_probs=18.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998799998688999981465
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
-+|.|+|+.||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=90.96 E-value=0.073 Score=27.50 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=21.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 589399998799998688999981465
Q 000904 1011 EGGHKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1011 ~~GekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
+.+.-+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=90.95 E-value=0.098 Score=26.50 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=18.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 589399998799998688999981465
Q 000904 1011 EGGHKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1011 ~~GekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
|+|-+|.|+|+.||||||+.+.|..-+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=90.89 E-value=0.077 Score=27.34 Aligned_cols=24 Identities=50% Similarity=0.689 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999986889999814656
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVE 1038 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~e 1038 (1232)
-|+|+|+.|||||||++.|.+..+
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.82 E-value=0.081 Score=27.15 Aligned_cols=22 Identities=45% Similarity=0.676 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799998688999981465
Q 000904 1016 IGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1016 igIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
|.|+||+||||+||++.|..-.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=90.78 E-value=0.071 Score=27.60 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=24.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 39999879999868899998146568852899999
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG 1048 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG 1048 (1232)
.-|.|+|+.||||||+++.|.+.+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.62 E-value=0.087 Score=26.90 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 3899703555468899988710877
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
.+||.|++||||||+.+.|.-.+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~ 28 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQ 28 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCH
T ss_conf 9999899978799999999999641
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.61 E-value=0.094 Score=26.66 Aligned_cols=28 Identities=14% Similarity=0.421 Sum_probs=23.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 9838997035554688999887108776
Q 000904 656 GQKVAICGEVGSGKSTLLAAILGEVPHT 683 (1232)
Q Consensus 656 G~~vaIvG~vGSGKSTLL~ailGe~~~~ 683 (1232)
...+.++||+|+||+||.+.++.+.|..
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~~~ 30 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHPDR 30 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 7719999989999999999999709767
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=90.56 E-value=0.11 Score=25.97 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8997035554688999887108
Q 000904 659 VAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 659 vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+||+|.+.+|||||+.+|.|.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=90.49 E-value=0.073 Score=27.52 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=23.9
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 1898389970355546889998871087
Q 000904 654 RPGQKVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 654 ~~G~~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
..+..+.++|+.||||||+.+.|...+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9871899989999898999999999869
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=90.49 E-value=0.09 Score=26.80 Aligned_cols=23 Identities=52% Similarity=0.632 Sum_probs=21.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
.|+++|.+|+|||||++++.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=90.44 E-value=0.11 Score=26.18 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 189838997035554688999887108
Q 000904 654 RPGQKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 654 ~~G~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
|+|.++.++|+.||||||..+.|.-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.43 E-value=0.076 Score=27.37 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998799998688999981465
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
.+|+|.|++|+|||||++.|..-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=90.31 E-value=0.1 Score=26.33 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 83899703555468899988710877
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
.++.|+|+.||||||+.+.|...++.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~~ 28 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLDN 28 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 08999899999989999999998099
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.31 E-value=0.098 Score=26.50 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 38997035554688999887108776
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVPHT 683 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~~~ 683 (1232)
.|+++|+.|+|||||+++|.|+-...
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~ 27 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRR 27 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEE
T ss_conf 89999999988999999996898535
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.28 E-value=0.094 Score=26.65 Aligned_cols=25 Identities=44% Similarity=0.765 Sum_probs=22.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 3899703555468899988710877
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
.++|+||+||||+||.+.++.+.|.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=90.27 E-value=0.14 Score=25.32 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=29.7
Q ss_pred CCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8401017786189838997035554688999887108
Q 000904 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 644 ~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
|.|++..--+.+|+++.|.|++|+|||+++.-+.--+
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~ 59 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6688874697898089999479997999999999726
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.26 E-value=0.089 Score=26.83 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=10.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799998688999981465
Q 000904 1016 IGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1016 igIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
|.++|..||||||+++.|.+.+
T Consensus 5 i~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999999999999999
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.26 E-value=0.1 Score=26.35 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999986889999814656
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVE 1038 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~e 1038 (1232)
+++|||...||||||+++|+|.--
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 599981898979999999968997
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.19 E-value=0.23 Score=23.66 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999987999986889999814
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~r 1035 (1232)
-||.++|..|+|||||++.+..
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899298999999971
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=90.16 E-value=0.11 Score=26.00 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999879999868899998146
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl 1036 (1232)
=||.++|+.|+|||||++.|.+-
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHCCC
T ss_conf 79999999998999999998089
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.15 E-value=0.29 Score=22.81 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999987999986889999814
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~r 1035 (1232)
-||.++|..|+|||||++.+..
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 6999999899588999999972
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.96 E-value=0.11 Score=26.22 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799998688999981465
Q 000904 1016 IGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1016 igIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
|.|+||+||||+||.+.|....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.95 E-value=0.14 Score=25.39 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=26.2
Q ss_pred EECCCCEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 8618983899703555468899988710877
Q 000904 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 652 ~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
-+++|+.+.|.|+.|||||+|+.-++.....
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~~ 49 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQL 49 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9859979999958999999999999999988
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=89.88 E-value=0.11 Score=26.17 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=12.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
.+.++|+.||||||+.+.|.-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.80 E-value=0.33 Score=22.38 Aligned_cols=21 Identities=38% Similarity=0.746 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.+||..|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.78 E-value=0.076 Score=27.37 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=12.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHC
Q ss_conf 3899703555468899988710
Q 000904 658 KVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe 679 (1232)
.++|.|+.|||||||...|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9983799878899999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.75 E-value=0.11 Score=26.05 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=22.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 58939999879999868899998146
Q 000904 1011 EGGHKIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1011 ~~GekigIVGrTGSGKSTLi~~L~rl 1036 (1232)
++.-||.+||+.|+|||||++.|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.72 E-value=0.11 Score=26.21 Aligned_cols=29 Identities=31% Similarity=0.312 Sum_probs=24.0
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 18983899703555468899988710877
Q 000904 654 RPGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 654 ~~G~~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
++...++|.|..||||||+++.|..+.+.
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~~ 35 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKND 35 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 98619998899998889999999987078
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.71 E-value=0.11 Score=26.01 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
.|+++|+.|+|||||++.+.|+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.67 E-value=0.054 Score=28.57 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999987999986889999814656
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFRLVE 1038 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~rl~e 1038 (1232)
.|-.|-++|.+||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=89.64 E-value=0.11 Score=26.06 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 389970355546889998871087
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
+++++|+.|+|||||++.+.+.-.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~~ 25 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGEI 25 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999898999999965988
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.54 E-value=0.19 Score=24.27 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=24.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9589399998799998688999981465
Q 000904 1010 FEGGHKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1010 I~~GekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
+++|+-+-|.|++|+||||+..-+..-.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 8599799999589999999999999999
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.53 E-value=0.25 Score=23.30 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=15.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 939999879999868899998146
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1013 GekigIVGrTGSGKSTLi~~L~rl 1036 (1232)
+-|+||||...+|||||+++|.+-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 737999789999899999999778
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.49 E-value=0.1 Score=26.41 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=24.1
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 18983899703555468899988710877
Q 000904 654 RPGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 654 ~~G~~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
++.-+++++|+.|+|||||+..+.|.-..
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~ 39 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG 39 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 77778999999998989999999678875
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.42 E-value=0.13 Score=25.50 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998688999981465
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
+++|||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=89.36 E-value=0.12 Score=25.85 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 838997035554688999887108
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
..+.|+|+.||||||+.+.|.-.+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.35 E-value=0.23 Score=23.53 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=27.0
Q ss_pred CCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 30000018995893999987999986889999814
Q 000904 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1001 ~vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~r 1035 (1232)
..+++-.+.+ .|.-+.|.|++|+||||+...|..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=89.34 E-value=0.12 Score=25.79 Aligned_cols=19 Identities=42% Similarity=0.740 Sum_probs=13.4
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999879999868899998
Q 000904 1015 KIGIVGRTGSGKTTLIGAL 1033 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L 1033 (1232)
-|||+|..||||||+.+.|
T Consensus 4 iIgITG~igSGKStv~~~l 22 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLF 22 (205)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9998888878899999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.33 E-value=0.14 Score=25.34 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=23.7
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 1898389970355546889998871087
Q 000904 654 RPGQKVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 654 ~~G~~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
++.-+++++|..|+|||||+..+.|.-.
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 9857999999999898999999966888
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.32 E-value=0.13 Score=25.47 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
.++|||.-+||||||+.+|+|+-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=89.31 E-value=0.13 Score=25.65 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 83899703555468899988710877
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
-++++||..|+|||||++.+.+.-..
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~~~~ 31 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVGEVV 31 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 29999999998999999999679876
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.15 E-value=0.13 Score=25.46 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999868899998146
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl 1036 (1232)
||.++|..|+|||||++.+.+-
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.11 E-value=0.32 Score=22.50 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999879999868899998146
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl 1036 (1232)
=||.++|..|+|||||++.+..-
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=89.10 E-value=0.096 Score=26.57 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=21.9
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 8997035554688999887108776
Q 000904 659 VAICGEVGSGKSTLLAAILGEVPHT 683 (1232)
Q Consensus 659 vaIvG~vGSGKSTLL~ailGe~~~~ 683 (1232)
||++|..|+|||||+++|.|+-...
T Consensus 4 VaivG~~nvGKSTLin~L~~~~~~~ 28 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAHPKI 28 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSCCEE
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCE
T ss_conf 9998999998999999996899715
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.05 E-value=0.12 Score=25.89 Aligned_cols=19 Identities=53% Similarity=0.802 Sum_probs=10.1
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999879999868899998
Q 000904 1015 KIGIVGRTGSGKTTLIGAL 1033 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L 1033 (1232)
.|||+|..||||||+++.|
T Consensus 5 IIgitG~~gSGKstva~~l 23 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALL 23 (191)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999898877899999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=89.03 E-value=0.14 Score=25.22 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=20.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 3899703555468899988710877
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
.++|+|++||||||+.+.|...+..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~ 106 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSR 106 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 9999689999876899999999730
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.00 E-value=0.13 Score=25.53 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
.++|||...||||||+.+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.97 E-value=0.088 Score=26.86 Aligned_cols=26 Identities=31% Similarity=0.380 Sum_probs=22.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 89838997035554688999887108
Q 000904 655 PGQKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 655 ~G~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+|..+.++|..||||||+.+.|.-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.96 E-value=0.17 Score=24.60 Aligned_cols=27 Identities=30% Similarity=0.307 Sum_probs=22.6
Q ss_pred ECCCCEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 618983899703555468899988710
Q 000904 653 VRPGQKVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 653 i~~G~~vaIvG~vGSGKSTLL~ailGe 679 (1232)
-++-+++.++|..||||||+.+.++..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999989999899999899999999976
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.87 E-value=0.16 Score=24.87 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999868899998146
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl 1036 (1232)
.|+|+|+..+|||||+++|.+-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.85 E-value=0.11 Score=26.01 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 8983899703555468899988710877
Q 000904 655 PGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 655 ~G~~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
++.+++|-|+.||||||+++.|...+..
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~ 28 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCED 28 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 9988999878887799999999999735
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.79 E-value=0.15 Score=25.06 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=88.75 E-value=0.18 Score=24.43 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 838997035554688999887108776
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEVPHT 683 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~~~~ 683 (1232)
-+++++|+.|+|||||++.+.|+....
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~~~~~ 29 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGEDVDT 29 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCCCSS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCCCC
T ss_conf 799999999989999999980899873
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=88.55 E-value=0.0054 Score=36.41 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=27.2
Q ss_pred CEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 4010177861898389970355546889998871
Q 000904 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG 678 (1232)
Q Consensus 645 ~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailG 678 (1232)
.+++..+.+.+| +++|+|++||||||+|.||.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 870279974998-089988999987999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.54 E-value=0.078 Score=27.28 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=17.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 389970355546889998871087
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
.+||+|.+||||||+.+++...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989997809999999999971
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.51 E-value=0.16 Score=24.83 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.42 E-value=0.16 Score=24.73 Aligned_cols=21 Identities=38% Similarity=0.426 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
.|+|+|+.|+|||||++.|.+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999980
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=88.34 E-value=0.16 Score=24.89 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999987999986889999814
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~r 1035 (1232)
=||.+||+.|+|||||++.+.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999899999999964
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.28 E-value=0.34 Score=22.24 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.15 E-value=0.17 Score=24.54 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHH
Q ss_conf 9889369999999998705998899866677989997999999999855-99389998449235
Q 000904 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPT 1183 (1232)
Q Consensus 1121 ~nLS~GQRQll~LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f-~~~TVI~IAHrl~t 1183 (1232)
.+|+.-+.+++.-..-+..+|-+++.-.. |...+..+.+..+... .+.+++.++...+.
T Consensus 196 ~~~~~~e~~~~~~~~~~~~kP~~~v~Nk~----d~~~~e~~~~~~~~~~~~~~~vi~~sa~~E~ 255 (319)
T d1wxqa1 196 TKWSQDDLLAFASEIRRVNKPMVIAANKA----DAASDEQIKRLVREEEKRGYIVIPTSAAAEL 255 (319)
T ss_dssp GGCCHHHHHHHHHHHHHHHSCEEEEEECG----GGSCHHHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCHHHHCCCC----CCHHHHHHHHHHHHHHHCCCEEEEECHHHHH
T ss_conf 44588899986887444237434322544----3102479999999875069989993588899
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=88.06 E-value=0.096 Score=26.57 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 3899703555468899988710877
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
-||++|+.++|||||+++|.|.-..
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~ 27 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPK 27 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 6999899998799999999689973
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.95 E-value=0.13 Score=25.44 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=21.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 3899703555468899988710877
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
.++|+||+||||+|+.+.++-+.+.
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~~ 26 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHSS 26 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 1999999999999999999974887
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.81 E-value=0.22 Score=23.80 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=87.78 E-value=0.15 Score=25.14 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998799998688999981465
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
-.|+|.|..||||||+++.|.+-.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=87.69 E-value=0.076 Score=27.39 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=21.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 389970355546889998871087
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
+++++|..|+|||||++++.|+-.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~~ 25 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNEDR 25 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTB
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999999999999958996
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=87.64 E-value=0.2 Score=24.02 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=22.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 83899703555468899988710877
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
.-+.++||.||||||+.++|.+++..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.63 E-value=0.19 Score=24.24 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 3899703555468899988710877
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
+++++|+.|+|||||+..+.+.-..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~ 26 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 8999999999999999999589987
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.57 E-value=0.18 Score=24.38 Aligned_cols=23 Identities=48% Similarity=0.667 Sum_probs=20.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
.|+++|.+|+|||||++++.|.-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999799998999999995898
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.54 E-value=0.2 Score=24.11 Aligned_cols=21 Identities=33% Similarity=0.718 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.53 E-value=0.17 Score=24.58 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 838997035554688999887108776
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEVPHT 683 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~~~~ 683 (1232)
..++|.|+.||||||+.+.|.-.+...
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 889998999989899999999999876
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.47 E-value=0.23 Score=23.59 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=20.7
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 189838997035554688999887108
Q 000904 654 RPGQKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 654 ~~G~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
++|.+++|.|+-||||||+...|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 980599998998889999999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.43 E-value=0.2 Score=24.06 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=87.29 E-value=0.57 Score=20.50 Aligned_cols=40 Identities=30% Similarity=0.281 Sum_probs=24.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECC
Q ss_conf 9399998799998688999981465688528999996179
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS 1052 (1232)
Q Consensus 1013 GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~ 1052 (1232)
+..+.+||+||+||||.+-=|...+.-.+-++.+=..|..
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~ 49 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 49 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 8689998999998899999999999977992799954434
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=87.23 E-value=0.1 Score=26.31 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=22.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 983899703555468899988710877
Q 000904 656 GQKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 656 G~~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
.-+++++|..++|||||+++|.|.-..
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~~~ 42 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQKSL 42 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCE
T ss_conf 978999889999899999998589854
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.19 E-value=0.21 Score=23.97 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=12.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799998688999981
Q 000904 1015 KIGIVGRTGSGKTTLIGALF 1034 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~ 1034 (1232)
.|||+|..||||||..+.|-
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.14 E-value=0.26 Score=23.20 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=16.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9589399998799998688999981
Q 000904 1010 FEGGHKIGIVGRTGSGKTTLIGALF 1034 (1232)
Q Consensus 1010 I~~GekigIVGrTGSGKSTLi~~L~ 1034 (1232)
|++|+-+-|.|+.|+||||+..-+.
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 8699699998389998899999999
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.11 E-value=0.5 Score=20.89 Aligned_cols=26 Identities=38% Similarity=0.389 Sum_probs=15.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 98389970355546889998871087
Q 000904 656 GQKVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 656 G~~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
+.+++|||-..+|||||++++.+--+
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~ 27 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGI 27 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 83488889999988999999977997
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.00 E-value=0.23 Score=23.61 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 93999987999986889999814656885289999
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD 1047 (1232)
Q Consensus 1013 GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~ID 1047 (1232)
...|.|+|+.||||||+.+.|..-+ |-+.++
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 9489998999998899999999997----992672
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.99 E-value=0.29 Score=22.81 Aligned_cols=39 Identities=13% Similarity=0.263 Sum_probs=30.3
Q ss_pred CEEEEEEE--ECCCCEEEEEECCCCCHHHHHHHHHHCCCCCC
Q ss_conf 40101778--61898389970355546889998871087765
Q 000904 645 TMRNISLE--VRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684 (1232)
Q Consensus 645 ~L~~Inl~--i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~ 684 (1232)
-|+++ +. +++|.++.|.|+.|||||+++.-++-......
T Consensus 14 ~LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~ 54 (242)
T d1tf7a2 14 RLDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVENACANK 54 (242)
T ss_dssp HHHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTT
T ss_pred HHHHH-HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 79884-568986984999991899999999999999998723
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=86.95 E-value=0.4 Score=21.71 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=25.0
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0000018995893999987999986889999814
Q 000904 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1002 vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~r 1035 (1232)
.+++-.+. -.|.-|.|+|++|+||||+...|..
T Consensus 4 ~lH~~~v~-~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEE-ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 28999999-9999999980899998999999998
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.88 E-value=0.23 Score=23.60 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=86.87 E-value=0.15 Score=24.99 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 8983899703555468899988710877
Q 000904 655 PGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 655 ~G~~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
+.-.++|+|+.|+|||||+..+......
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8328974389999899999999999975
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.84 E-value=0.31 Score=22.56 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=22.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 8983899703555468899988710877
Q 000904 655 PGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 655 ~G~~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
+|.++++-|.-||||||+...+.-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.81 E-value=0.24 Score=23.48 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 838997035554688999887108
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
..|+++|+.|+|||||+..+.+.-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 989999999989899999998099
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=86.79 E-value=0.28 Score=22.96 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=18.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 89838997035554688999887108
Q 000904 655 PGQKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 655 ~G~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+|.+++|-|.-||||||+...|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98789998998887999999999999
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.77 E-value=0.24 Score=23.46 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=21.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 89838997035554688999887108
Q 000904 655 PGQKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 655 ~G~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+...+.|+|+.||||||+...|.-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.74 E-value=0.27 Score=23.08 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998688999981465
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
||.++|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.60 E-value=0.16 Score=24.72 Aligned_cols=27 Identities=37% Similarity=0.507 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999987999986889999814656
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFRLVE 1038 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~rl~e 1038 (1232)
++..|+|-|..||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.55 E-value=0.24 Score=23.42 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999868899998146
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl 1036 (1232)
||.+||..|+|||||++.+..-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.52 E-value=0.61 Score=20.23 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=69.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCCCCCC-CCCHH
Q ss_conf 89399998799998688999981465688528999996179989676630178882688777654776037799-99999
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQ 1090 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NLdp~~-~~sd~ 1090 (1232)
.+..+-+.|++|+||+|++..+.+.++-... +.|-++ .+.|-+ ...-+
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~-------------------------~h~D~~------~i~~~~~~I~Id 62 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVEKFPP-------------------------KASDVL------EIDPEGENIGID 62 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHTSCC-------------------------CTTTEE------EECCSSSCBCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-------------------------CCCCEE------EEECCCCCCCHH
T ss_conf 9855998898998889999999999843456-------------------------799889------980776789989
Q ss_pred HHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999998599188984005875322389998893699999999987059988998666779899979999999998559
Q 000904 1091 EIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA 1170 (1232)
Q Consensus 1091 eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~ 1170 (1232)
+|++..+.+... | . ..+.||+++||+- .+..+..+.+.++|.+--+
T Consensus 63 ~IR~i~~~~~~~------~-------------~--------------~~~~KviIId~ad-~l~~~aqNaLLK~LEEPp~ 108 (198)
T d2gnoa2 63 DIRTIKDFLNYS------P-------------E--------------LYTRKYVIVHDCE-RMTQQAANAFLKALEEPPE 108 (198)
T ss_dssp HHHHHHHHHTSC------C-------------S--------------SSSSEEEEETTGG-GBCHHHHHHTHHHHHSCCT
T ss_pred HHHHHHHHHHHC------C-------------C--------------CCCCEEEEEECCC-CCCHHHHHHHHHHHHCCCC
T ss_conf 999999999617------5-------------4--------------5898799994731-0366666478887737898
Q ss_pred CCEEEEEECCHHHHHH
Q ss_conf 9389998449235640
Q 000904 1171 DCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1171 ~~TVI~IAHrl~tI~~ 1186 (1232)
++..|.++++.+.+..
T Consensus 109 ~t~fiLit~~~~~ll~ 124 (198)
T d2gnoa2 109 YAVIVLNTRRWHYLLP 124 (198)
T ss_dssp TEEEEEEESCGGGSCH
T ss_pred CCEEEECCCCHHHCHH
T ss_conf 8522220699566878
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.50 E-value=0.21 Score=23.86 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.44 E-value=0.21 Score=23.82 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=86.28 E-value=0.14 Score=25.34 Aligned_cols=23 Identities=48% Similarity=0.668 Sum_probs=13.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999879999868899998146
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl 1036 (1232)
-+|||.|+-|+|||||+..|.+.
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 59861179988899999999998
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=86.26 E-value=0.48 Score=21.03 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=27.6
Q ss_pred CCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 84010177861898389970355546889998871
Q 000904 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG 678 (1232)
Q Consensus 644 ~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailG 678 (1232)
..++.--+.+ .|.=+.++|++|+||||+...+..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=86.21 E-value=0.25 Score=23.30 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998799998688999981465
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
..|-++|++||||||+.+.|..-+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.20 E-value=0.34 Score=22.22 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=26.6
Q ss_pred CCEEEEEE-EECCCCEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 84010177-8618983899703555468899988710
Q 000904 644 PTMRNISL-EVRPGQKVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 644 ~~L~~Inl-~i~~G~~vaIvG~vGSGKSTLL~ailGe 679 (1232)
+.|+++-- -+++|+++.|.|+.|+|||+|..-++..
T Consensus 13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~ 49 (242)
T d1tf7a1 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 49 (242)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 7798855689969839999947999999999999999
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.13 E-value=0.28 Score=22.86 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.10 E-value=0.35 Score=22.13 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999986889999814656
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVE 1038 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~e 1038 (1232)
||.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=86.01 E-value=0.24 Score=23.40 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=17.8
Q ss_pred EEEEEECCCCCHHHHHHHHH
Q ss_conf 38997035554688999887
Q 000904 658 KVAICGEVGSGKSTLLAAIL 677 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ail 677 (1232)
.+||+|..||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=85.98 E-value=0.27 Score=23.10 Aligned_cols=30 Identities=37% Similarity=0.532 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999879999868899998146568852899999
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG 1048 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG 1048 (1232)
.|.++|..||||||+.+.|...+ |--++|.
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d~ 31 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLDS 31 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf 39998999998899999999983----9987836
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.97 E-value=0.26 Score=23.12 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHC
Q ss_conf 3899703555468899988710
Q 000904 658 KVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe 679 (1232)
+++++|..|+|||||+..+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.95 E-value=0.24 Score=23.45 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=19.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 8389970355546889998871087
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
.-+.++||.|+|||.|.+++..++.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 6699989999888899999862132
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.94 E-value=0.27 Score=22.97 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=85.86 E-value=0.27 Score=23.00 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|+.|+|||||++.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=85.80 E-value=0.3 Score=22.66 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=12.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
.++|-||.||||||..+.|.-++
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=85.74 E-value=0.3 Score=22.62 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=10.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999868899998146
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl 1036 (1232)
+|.|+|+.||||||+.+.|..-
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999879999999998
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.73 E-value=0.27 Score=22.97 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=19.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHC
Q ss_conf 3899703555468899988710
Q 000904 658 KVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe 679 (1232)
+++++|..|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=85.71 E-value=0.2 Score=23.99 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998688999981465
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
+|.|.|+.||||||+.+.|..-+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=85.64 E-value=0.25 Score=23.23 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=16.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998799998688999981465
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
+.|-++|..||||||+.+.|..-+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.63 E-value=0.32 Score=22.49 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=13.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 958939999879999868899998
Q 000904 1010 FEGGHKIGIVGRTGSGKTTLIGAL 1033 (1232)
Q Consensus 1010 I~~GekigIVGrTGSGKSTLi~~L 1033 (1232)
+++|+.+-|.|++|+||||+..-+
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 558879999858989889999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.60 E-value=0.31 Score=22.53 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=12.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHC
Q ss_conf 3899703555468899988710
Q 000904 658 KVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe 679 (1232)
.+.|+|+.||||||+...|.-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999989999999998
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.55 E-value=0.32 Score=22.48 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.54 E-value=0.29 Score=22.84 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+++++|..|+|||||++.+.+.-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.49 E-value=0.31 Score=22.54 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=24.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 58939999879999868899998146568
Q 000904 1011 EGGHKIGIVGRTGSGKTTLIGALFRLVEP 1039 (1232)
Q Consensus 1011 ~~GekigIVGrTGSGKSTLi~~L~rl~ep 1039 (1232)
+.|--|+|.|.-||||||+++.|..-+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.49 E-value=0.55 Score=20.62 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=20.2
Q ss_pred EEEEECCC-EEEEECCCCCCHHHHHHHH
Q ss_conf 18995893-9999879999868899998
Q 000904 1007 SCTFEGGH-KIGIVGRTGSGKTTLIGAL 1033 (1232)
Q Consensus 1007 sl~I~~Ge-kigIVGrTGSGKSTLi~~L 1033 (1232)
++.+.++. .+-|.|+|.+||||+++++
T Consensus 34 di~l~~~~~~~iiTGpN~~GKSt~lk~i 61 (234)
T d1wb9a2 34 PLNLSPQRRMLIITGPNMGGKSTYMRQT 61 (234)
T ss_dssp EEEECSSSCEEEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 5798899539999546731368999987
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.28 E-value=0.41 Score=21.61 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=24.9
Q ss_pred EECCCCEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 86189838997035554688999887108
Q 000904 652 EVRPGQKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 652 ~i~~G~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
-+++|+.+.|.|+.|||||++..-++-..
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~ 58 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTC 58 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98699699998389998899999999986
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.27 E-value=0.3 Score=22.64 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.22 E-value=0.3 Score=22.73 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=20.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 389970355546889998871087
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
+++++|..|+|||||++.+.+.-.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~~ 29 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNEF 29 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999999098999999982998
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.17 E-value=0.27 Score=23.04 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 838997035554688999887108
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+=+.++||+|||||-|.+.|.+++
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 647998999988999999999873
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.10 E-value=0.32 Score=22.46 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=85.09 E-value=0.33 Score=22.40 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=25.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 958939999879999868899998146568
Q 000904 1010 FEGGHKIGIVGRTGSGKTTLIGALFRLVEP 1039 (1232)
Q Consensus 1010 I~~GekigIVGrTGSGKSTLi~~L~rl~ep 1039 (1232)
.++|..|.+.|.=||||||+++.+.+-+..
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 799829999668776588999998764223
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.09 E-value=0.35 Score=22.15 Aligned_cols=115 Identities=13% Similarity=0.173 Sum_probs=53.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCCCCCCCCCHHHHHH
Q ss_conf 99998799998688999981465688528999996179989676630178882688777654776037799999999999
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWE 1094 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NLdp~~~~sd~eI~~ 1094 (1232)
+|.|.|+.||||||..+.|..-+ |-..|+-- +-+|.- +-++...+.-.+.+.+.-.....|+.+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~g-------~llR~~---~~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 68 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSAG-------ELLRDE---RKNPDSQYGELIEKYIKEGKIVPVEITIS 68 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEHH-------HHHHHH---HHCTTSTTHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECHH-------HHHHHH---HHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99997999999899999999986----99267688-------999998---87620468999999970697211340367
Q ss_pred HHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC---EEEEEC
Q ss_conf 999859918898400587532238999889369999999998705998---899866
Q 000904 1095 VLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR---ILVLDE 1148 (1232)
Q Consensus 1095 aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~---ILILDE 1148 (1232)
.+...-. ...... ..-+..+. .| +...+.|.-.+.+.+-.... ++++|.
T Consensus 69 ~~~~~~~-~~~~~~-~~~~~~~~-~g--~pr~~~~~~~l~~~~~~~~~~~~vi~l~~ 120 (194)
T d1teva_ 69 LLKREMD-QTMAAN-AQKNKFLI-DG--FPRNQDNLQGWNKTMDGKADVSFVLFFDC 120 (194)
T ss_dssp HHHHHHH-HHHHHC-TTCCEEEE-ES--CCCSHHHHHHHHHHHTTTCEEEEEEEEEC
T ss_pred HHHHHHC-CCCHHH-HCCCCEEE-CC--CHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 8887641-210001-12451110-11--03048999998644210554338996247
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.09 E-value=0.31 Score=22.59 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=22.5
Q ss_pred EECCCCEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 861898389970355546889998871087
Q 000904 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 652 ~i~~G~~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
-+++|+.+.|.|+.|||||++...++.+..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~ 62 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQ 62 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 976897999988998878899999999997
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=85.09 E-value=0.36 Score=22.04 Aligned_cols=32 Identities=38% Similarity=0.618 Sum_probs=25.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999879999868899998146568852899999
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG 1048 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG 1048 (1232)
-|-++|++|+||||++++|.+... .+-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--CCEEEEEC
T ss_conf 999889799889999999999865--15489832
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.07 E-value=0.33 Score=22.37 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=13.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 89838997035554688999887108
Q 000904 655 PGQKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 655 ~G~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
.+..+.|.|+.|+|||||+..++.+.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=85.04 E-value=0.29 Score=22.80 Aligned_cols=23 Identities=48% Similarity=0.637 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998688999981465
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
.|||+|...+|||||+.+|.+..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=85.04 E-value=0.21 Score=23.85 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=20.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 893999987999986889999814
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~r 1035 (1232)
+.-||.++|..|+|||||++.+.+
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 668999999999988999988733
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=85.00 E-value=0.29 Score=22.80 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=21.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
.++|+|.+.+|||||+.+|++.-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.98 E-value=0.34 Score=22.22 Aligned_cols=116 Identities=14% Similarity=0.168 Sum_probs=54.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCCCCCCCCCHHHH
Q ss_conf 93999987999986889999814656885289999961799896766301788826887776547760377999999999
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEI 1092 (1232)
Q Consensus 1013 GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NLdp~~~~sd~eI 1092 (1232)
-..|.|+|+.||||||+.+.|..-+ |-+.|+.-| -+|.. +.+...-....+++-.+......|..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~gd-------l~R~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~ 73 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAGD-------LLRAE---QGRAGSQYGELIKNCIKEGQIVPQEIT 73 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHHH-------HHHHH---HHSTTCSCHHHHHHHHHTTCCCCHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHHH-------HHHHH---HHHCCCHHHHHHHHHHHCCCCCCCHHH
T ss_conf 7289998999999899999999985----990885358-------99988---620101788998876400002320367
Q ss_pred HHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999998599188984005875322389998893699999999987059988998666
Q 000904 1093 WEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEA 1149 (1232)
Q Consensus 1093 ~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~ILILDEa 1149 (1232)
...+...- .......-+..+.+ .+-....|...+.+.+.....++.||=+
T Consensus 74 ~~~~~~~~----~~~~~~~~~~~vl~---g~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 74 LALLRNAI----SDNVKANKHKFLID---GFPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHH----HHHHHTTCCEEEEE---TCCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHH----HHHHCCCCCCEEEE---CCCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 89999998----86400377753540---4313689999999861545543125798
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.95 E-value=0.28 Score=22.90 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=84.94 E-value=0.31 Score=22.53 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=18.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHH
Q ss_conf 9838997035554688999887
Q 000904 656 GQKVAICGEVGSGKSTLLAAIL 677 (1232)
Q Consensus 656 G~~vaIvG~vGSGKSTLL~ail 677 (1232)
-..+||+|.+||||||+...+.
T Consensus 3 p~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 9899998988778999999999
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.89 E-value=0.21 Score=23.89 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=29.2
Q ss_pred EEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 017786189838997035554688999887108776
Q 000904 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT 683 (1232)
Q Consensus 648 ~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~ 683 (1232)
|.=+.+.+|++.+|.|+.|+|||+|+..|..-....
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~~ 70 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 70 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 412564578755686799988789999999977515
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.81 E-value=0.34 Score=22.27 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+++++|..|+|||||+..+.+.-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999979989999999998098
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=84.72 E-value=0.52 Score=20.80 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=24.9
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0000018995893999987999986889999814
Q 000904 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1002 vL~~isl~I~~GekigIVGrTGSGKSTLi~~L~r 1035 (1232)
.+++- +---.|.-|.|.|++|+||||+...|.+
T Consensus 5 ~~H~~-~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHGV-LVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEESE-EEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEE-EEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 48899-9999999999980899999999999998
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.66 E-value=0.3 Score=22.66 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=84.59 E-value=0.38 Score=21.83 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=20.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 389970355546889998871087
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
-++|+|.+.+|||||+.+|+|...
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999993458849999999970344
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.59 E-value=0.26 Score=23.12 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 8389970355546889998871087
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
.+++++|..||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.57 E-value=0.3 Score=22.69 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999987999986889999814
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~r 1035 (1232)
-||.++|.+|+|||||++.+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899388999999971
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=84.56 E-value=0.38 Score=21.87 Aligned_cols=27 Identities=33% Similarity=0.382 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999987999986889999814656
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFRLVE 1038 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~rl~e 1038 (1232)
+|..|.|-|.-||||||+++.|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.54 E-value=0.36 Score=22.09 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+++++|..|+|||||+..+.++-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.53 E-value=0.37 Score=21.91 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.52 E-value=0.3 Score=22.66 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.51 E-value=0.43 Score=21.40 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+++++|..|+|||||+..+.+.-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=84.48 E-value=0.39 Score=21.81 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=15.6
Q ss_pred ECCCCEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 618983899703555468899988710
Q 000904 653 VRPGQKVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 653 i~~G~~vaIvG~vGSGKSTLL~ailGe 679 (1232)
+++|+++.|.|+.|+|||++..-++-.
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 628859999917999989999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=84.39 E-value=0.29 Score=22.75 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=20.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 838997035554688999887108
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
-+++++|+.|+|||||++.+.+.-
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999989999999996487
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.28 E-value=0.44 Score=21.33 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999986889999814656
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVE 1038 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~e 1038 (1232)
.+-+.||.|+||||+++++.+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.27 E-value=0.35 Score=22.10 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHC
Q ss_conf 3899703555468899988710
Q 000904 658 KVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe 679 (1232)
+++++|..|+|||||++.+++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.17 E-value=0.35 Score=22.13 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+++|+|..|+|||||+..+++.-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999939999999996299
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.11 E-value=0.38 Score=21.89 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHC
Q ss_conf 3899703555468899988710
Q 000904 658 KVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe 679 (1232)
+++++|..|+|||||+..+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=84.11 E-value=0.37 Score=21.98 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=26.0
Q ss_pred EEECCCCEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 78618983899703555468899988710877
Q 000904 651 LEVRPGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 651 l~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
+.-++|..+-++|.+||||||+.+.|.-.+..
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~ 50 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVR 50 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 85899869999899999989999999988777
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.10 E-value=0.38 Score=21.86 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 83899703555468899988710
Q 000904 657 QKVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe 679 (1232)
-+++++|..|+|||||+..+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.05 E-value=0.36 Score=22.06 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998688999981465
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
-|||.|..|||||||...|...+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.03 E-value=0.37 Score=21.99 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=18.9
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 389970355546889998871
Q 000904 658 KVAICGEVGSGKSTLLAAILG 678 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailG 678 (1232)
+++++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.99 E-value=0.28 Score=22.93 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998688999981465
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
+|.++|..||||||+.+.|...+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 48998899998899999999984
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.96 E-value=0.39 Score=21.80 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+++++|..|+|||||++.+.+.-
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989909899999998499
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.91 E-value=0.41 Score=21.57 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=83.86 E-value=0.49 Score=20.98 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9589399998799998688999981465
Q 000904 1010 FEGGHKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1010 I~~GekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
+++|+-+-|.|++|+|||++..-+.--.
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6288599999179999899999999999
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.85 E-value=0.4 Score=21.64 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=24.8
Q ss_pred ECCCCEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 618983899703555468899988710877
Q 000904 653 VRPGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 653 i~~G~~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
+++..-+.+.||.|+|||++.+++.++...
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~~ 67 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQA 67 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 998875788789987630477887877189
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.85 E-value=0.39 Score=21.81 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=83.81 E-value=0.37 Score=21.97 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998688999981465
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
+|.|+|+.||||||..+.|..-+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.69 E-value=0.25 Score=23.23 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.63 E-value=0.39 Score=21.73 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=21.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 3899703555468899988710877
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
+++++|..|+|||||++.+.+.-..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~~ 27 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVEDG 27 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999898993999999998188567
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.54 E-value=0.44 Score=21.37 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8939999879999868899998146568
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFRLVEP 1039 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~rl~ep 1039 (1232)
+|.-|+|-|.-||||||+++.|...++.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.54 E-value=0.44 Score=21.38 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999879999868899998146
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRL 1036 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl 1036 (1232)
=.|+|+|+-++|||||+..|+..
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHH
T ss_conf 19999947898499999999998
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.52 E-value=0.24 Score=23.38 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||+..+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.49 E-value=0.3 Score=22.64 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=56.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCCCCCCCCCHH
Q ss_conf 58939999879999868899998146568852899999617998967663017888268877765477603779999999
Q 000904 1011 EGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQ 1090 (1232)
Q Consensus 1011 ~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NLdp~~~~sd~ 1090 (1232)
+.+..|.|.|+.||||||+.+.|..-+ |-..|+.-|+ +|..+ ... .....++.+.++.....+|+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~l-------lr~~~---~~~-~~~~~~~~~~~~~~~~~~~~ 70 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGDL-------LRAEV---SSG-SARGKMLSEIMEKGQLVPLE 70 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHHH-------HHHHH---HHT-CHHHHHHHHHHTTTCCCCHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCHH-------HHHHH---HHH-HHHHHHHHHHHHHCCCCCHH
T ss_conf 678289998999998799999999986----9846833478-------99999---876-76514567777631377622
Q ss_pred HHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99999998599188984005875322389998893699999999987059988998666
Q 000904 1091 EIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEA 1149 (1232)
Q Consensus 1091 eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~ILILDEa 1149 (1232)
.+...+.. .+..........+.+ .+..-..|.-.+.+.+.....++.+|.+
T Consensus 71 ~~~~~~~~-----~l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 71 TVLDMLRD-----AMVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHH-----HHHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred EEEEEHHH-----HHHHCCCCCCCCEEE---ECCCHHHHHHHHHHHHCCCCCHHCCCCC
T ss_conf 24410245-----664032235660243---1110157899999983775200003331
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.49 E-value=0.4 Score=21.66 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999987999986889999814
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~r 1035 (1232)
=||.++|..|+|||||++.+.+
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 2899999899088999999971
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.48 E-value=0.41 Score=21.57 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=19.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 8389970355546889998871087
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
.+++|.|..||||||+++.|...+.
T Consensus 1 mlI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9899989987899999999999998
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.39 E-value=0.36 Score=22.06 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=83.39 E-value=0.35 Score=22.15 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=20.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 8389970355546889998871087
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
..+.|+|++|||||+++..++-..-
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~ 75 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGL 75 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 6589990799968999999999998
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=83.29 E-value=0.46 Score=21.23 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799998688999981
Q 000904 1015 KIGIVGRTGSGKTTLIGALF 1034 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~ 1034 (1232)
.|||.|.-||||||..+.|.
T Consensus 3 iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99997999988999999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.28 E-value=0.54 Score=20.69 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=24.8
Q ss_pred EECCCCEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 86189838997035554688999887108
Q 000904 652 EVRPGQKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 652 ~i~~G~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
-+++|+.+.|.|+.|||||++..-++-..
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 95588799998589898899999999986
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.23 E-value=0.43 Score=21.41 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 838997035554688999887108
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
.++.|+|..|+|||||+..+.+.-
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 799999989938899999997199
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.22 E-value=0.43 Score=21.42 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHC
Q ss_conf 3899703555468899988710
Q 000904 658 KVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe 679 (1232)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.20 E-value=0.34 Score=22.21 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=19.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399998799998688999981465
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1013 GekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
=--|+|+|+.++|||||++.|++-.
T Consensus 32 v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 32 MVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 7999988999997999999980998
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=83.16 E-value=0.4 Score=21.69 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99987999986889999814656
Q 000904 1016 IGIVGRTGSGKTTLIGALFRLVE 1038 (1232)
Q Consensus 1016 igIVGrTGSGKSTLi~~L~rl~e 1038 (1232)
+.|.|..||||||+++.|...+.
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989899898999999999998
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.16 E-value=0.42 Score=21.52 Aligned_cols=23 Identities=43% Similarity=0.653 Sum_probs=20.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+++++|..|+|||||++.+.+.-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989908899999997199
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=83.16 E-value=0.39 Score=21.75 Aligned_cols=24 Identities=38% Similarity=0.351 Sum_probs=20.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 838997035554688999887108
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
..+.|.|+.||||||+...|.-.+
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 299998899999899999999987
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.15 E-value=0.42 Score=21.49 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.13 E-value=0.64 Score=20.05 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=25.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 999987999986889999814656885289
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ep~~G~I 1044 (1232)
||.++|..|+|||||++-+....-|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf 999999999888999998840897972479
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.06 E-value=0.41 Score=21.58 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.|+|..|+|||||++.+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.00 E-value=0.26 Score=23.23 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=28.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCC
Q ss_conf 999987999986889999814656885289999961799896766301788826887
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPT 1071 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~ 1071 (1232)
-|||.|.|||||||+.++|..++... | -+..+|.||.+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~------------------v~~~iI~~Dsf 43 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G------------------VKAVSIEGDAF 43 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T------------------CCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C------------------CCEEEEECCCC
T ss_conf 99998999780999999999997156-9------------------97699947778
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.86 E-value=0.63 Score=20.13 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=17.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 838997035554688999887108776
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEVPHT 683 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~~~~ 683 (1232)
..+.+.|+.|+|||++++.+...+...
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~ 70 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDK 70 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 816888989998999999999997544
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.80 E-value=0.44 Score=21.34 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+++|+|..|+|||||+..+++.-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999949899999997299
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=82.79 E-value=0.44 Score=21.34 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=19.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+++++|+.|+|||||+..+.+.-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999997197
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=82.75 E-value=0.44 Score=21.39 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=22.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 89838997035554688999887108
Q 000904 655 PGQKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 655 ~G~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+.-.++|.|+.|+|||||+..+...+
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 81598611799888999999999987
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.73 E-value=0.46 Score=21.20 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998688999981465
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
+|.|+|+.||||||+.+.|.--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=82.66 E-value=0.42 Score=21.56 Aligned_cols=20 Identities=50% Similarity=0.679 Sum_probs=18.0
Q ss_pred EEEEEECCCCCHHHHHHHHH
Q ss_conf 38997035554688999887
Q 000904 658 KVAICGEVGSGKSTLLAAIL 677 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ail 677 (1232)
.+||+|..||||||..+.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.54 E-value=0.5 Score=20.94 Aligned_cols=39 Identities=36% Similarity=0.594 Sum_probs=26.5
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCEEEE
Q ss_conf 89958939999879999868899998146-5688528999
Q 000904 1008 CTFEGGHKIGIVGRTGSGKTTLIGALFRL-VEPAGGKILV 1046 (1232)
Q Consensus 1008 l~I~~GekigIVGrTGSGKSTLi~~L~rl-~ep~~G~I~I 1046 (1232)
+.+-.|+|++|.|..|+|||+|+.-+.+- .+...+.+.+
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~ 102 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 102 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 5636788777667999898999999999887617996999
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=82.42 E-value=0.54 Score=20.63 Aligned_cols=28 Identities=36% Similarity=0.461 Sum_probs=23.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 8983899703555468899988710877
Q 000904 655 PGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 655 ~G~~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
...-+.+.||.|+|||++.++|..+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~~ 71 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKV 71 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 8886786689988822899999998299
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.38 E-value=0.49 Score=20.98 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+++|+|+.|+|||||++.+.+.-
T Consensus 8 KivvvG~~~vGKTsli~~l~~~~ 30 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDDT 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999909899999996198
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.36 E-value=0.52 Score=20.81 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=23.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 95893999987999986889999814
Q 000904 1010 FEGGHKIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1010 I~~GekigIVGrTGSGKSTLi~~L~r 1035 (1232)
|++|+.+-|.|++|+|||++...+..
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 76897999988998878899999999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.29 E-value=0.47 Score=21.12 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=20.5
Q ss_pred EEEEEECCCCCHHHHHHHHH-HCCCC
Q ss_conf 38997035554688999887-10877
Q 000904 658 KVAICGEVGSGKSTLLAAIL-GEVPH 682 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ail-Ge~~~ 682 (1232)
+++++|..|+|||||++.+. |+.+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~~~ 29 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRFPD 29 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 99999999929899999997399988
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.27 E-value=0.5 Score=20.93 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 9838997035554688999887108
Q 000904 656 GQKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 656 G~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
-..+.|+|+.||||||+...|...+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=82.26 E-value=0.47 Score=21.16 Aligned_cols=28 Identities=36% Similarity=0.540 Sum_probs=22.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5893999987999986889999814656
Q 000904 1011 EGGHKIGIVGRTGSGKTTLIGALFRLVE 1038 (1232)
Q Consensus 1011 ~~GekigIVGrTGSGKSTLi~~L~rl~e 1038 (1232)
+|.=.|||+|.-.+|||||+..|.+...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9970899997248869999999970412
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.23 E-value=0.54 Score=20.66 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998688999981465
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
+|.|.|+.||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.22 E-value=0.48 Score=21.10 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.19 E-value=0.54 Score=20.66 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=21.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 3899703555468899988710877
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~~ 682 (1232)
++.++|..|+|||||++.+.+..+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=82.16 E-value=0.92 Score=18.84 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=25.3
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 9987059988998666779899979999999998
Q 000904 1134 GRALLRRSRILVLDEATASIDNATDMILQKTIRA 1167 (1232)
Q Consensus 1134 ARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~ 1167 (1232)
.+-.+++-+++|+||+= ..|.+++..+...++.
T Consensus 88 ~~~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~ 120 (136)
T d1a1va1 88 GGCSGGAYDIIICDECH-STDATSILGIGTVLDQ 120 (136)
T ss_dssp TGGGGCCCSEEEEETTT-CCSHHHHHHHHHHHHH
T ss_pred CCHHHHCCCEEEEECCC-CCCHHHHHHHHHHHHH
T ss_conf 53024159999982555-3588789999999999
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=82.13 E-value=0.5 Score=20.91 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 838997035554688999887108
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+.+.|+|+.||||||+...|.-.+
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 989998899998799999999987
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.12 E-value=0.49 Score=21.02 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+++++|..|+|||||++.+.+.-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~ 27 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999919899999997299
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.07 E-value=0.92 Score=18.82 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=32.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 99889986667798999799999999985599389998449235640
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1140 ~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHrl~tI~~ 1186 (1232)
+.+++++||+- .+.......+.+.+.+..+.+-+++++++...+..
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~ 144 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTP 144 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHH
T ss_conf 71899996632-00023789999886311200232012670877599
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.03 E-value=0.51 Score=20.83 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+++++|..|+|||||+..+.+.-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~~ 30 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQSY 30 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999979969899999997399
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.96 E-value=0.34 Score=22.25 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 838997035554688999887108
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
-+++|+|..|+|||||++.+++.-
T Consensus 6 iKivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 999999999979999999997498
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=81.85 E-value=0.54 Score=20.66 Aligned_cols=37 Identities=30% Similarity=0.523 Sum_probs=29.7
Q ss_pred EECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 86189838997035554688999887108776554322
Q 000904 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 652 ~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~ 689 (1232)
..++|..+.+.|+.||||||+.+.++..+.. .+.|.+
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~-~~~V~S 65 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH-QGNVKS 65 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC-CSCCCC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC-CCCCCC
T ss_conf 5799829999668776588999998764223-466678
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=81.84 E-value=0.68 Score=19.87 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=22.7
Q ss_pred ECCCCEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 618983899703555468899988710
Q 000904 653 VRPGQKVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 653 i~~G~~vaIvG~vGSGKSTLL~ailGe 679 (1232)
+.+|+++.|+|+.|+|||+|+..+.--
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ 52 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQ 52 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 558958999928999899999999999
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.83 E-value=0.49 Score=21.00 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.75 E-value=0.53 Score=20.74 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.70 E-value=0.36 Score=22.01 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=14.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8997035554688999887108
Q 000904 659 VAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 659 vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+.++||.|+||||+.+++..++
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=81.69 E-value=0.95 Score=18.72 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=30.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 99889986667798999799999999985599389998449235640
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1140 ~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHrl~tI~~ 1186 (1232)
+.+++|+||+-. +..++...+.+++.+--++...|.++++.+.+..
T Consensus 108 ~~kviIide~d~-l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~ 153 (207)
T d1a5ta2 108 GAKVVWVTDAAL-LTDAAANALLKTLEEPPAETWFFLATREPERLLA 153 (207)
T ss_dssp SCEEEEESCGGG-BCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCH
T ss_pred CCCEEEECHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
T ss_conf 640477313442-0000149999999850111104553068655103
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.67 E-value=0.51 Score=20.83 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+++++|..|+|||||+..+.+.-
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCENK 27 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999939899999998299
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.67 E-value=0.52 Score=20.79 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.+||..|+|||||++.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999899899999999970
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.64 E-value=0.49 Score=21.01 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHC
Q ss_conf 3899703555468899988710
Q 000904 658 KVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe 679 (1232)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.63 E-value=0.54 Score=20.66 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=19.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHC
Q ss_conf 3899703555468899988710
Q 000904 658 KVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe 679 (1232)
+++++|..|+|||||+..+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.47 E-value=0.53 Score=20.73 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHC
Q ss_conf 3899703555468899988710
Q 000904 658 KVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe 679 (1232)
+++++|..|+|||||++.+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.36 E-value=0.53 Score=20.71 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 838997035554688999887108
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
-+++++|..|+|||||+..+++.-
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 799999989978999999997197
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.31 E-value=0.54 Score=20.64 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998799998688999981465
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
.+..+.|+|+.|+|||||++.+.+-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=81.29 E-value=0.54 Score=20.66 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=14.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
.++|-||.||||+|..+.|...+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=81.28 E-value=0.59 Score=20.38 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 838997035554688999887108
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+.+.++|+.||||||..+.|.-.+
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 989998799999899999999986
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=81.25 E-value=0.72 Score=19.69 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 89399998799998688999981465688
Q 000904 1012 GGHKIGIVGRTGSGKTTLIGALFRLVEPA 1040 (1232)
Q Consensus 1012 ~GekigIVGrTGSGKSTLi~~L~rl~ep~ 1040 (1232)
.+-+++|||..-+|||||+++|.|--...
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~ 139 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNIAK 139 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCEEE
T ss_conf 75278998667544355542542661588
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=81.18 E-value=0.99 Score=18.59 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=23.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 3899703555468899988710877655
Q 000904 658 KVAICGEVGSGKSTLLAAILGEVPHTQG 685 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~~~~~G 685 (1232)
++.|=|..||||||+++.+........+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~ 35 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSP 35 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 9999888667899999999998656997
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.10 E-value=0.56 Score=20.56 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+++++|..|+|||||+..+.+.-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~ 30 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999949899999998598
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=81.06 E-value=0.51 Score=20.88 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
-+.++|+.||||||+.+.+...+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999983
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.04 E-value=0.5 Score=20.92 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=19.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHC
Q ss_conf 3899703555468899988710
Q 000904 658 KVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe 679 (1232)
-++++|.+++|||||+.+|++.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=80.91 E-value=0.66 Score=19.95 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=14.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399998799998688999981465
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1013 GekigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
.-+|.|+|+-||||||+.+.|..-+
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 2169998899998799999999997
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=80.86 E-value=0.58 Score=20.43 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=28.0
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 89958939999879999868899998146568
Q 000904 1008 CTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP 1039 (1232)
Q Consensus 1008 l~I~~GekigIVGrTGSGKSTLi~~L~rl~ep 1039 (1232)
+.|-.|+|++|.|..|+|||||+..+.+-...
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~ 69 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 69 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 56457875568679998878999999997751
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.85 E-value=0.6 Score=20.30 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999986889999814
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR 1035 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r 1035 (1232)
||.++|..|+|||||++.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999699999999971
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=80.79 E-value=0.42 Score=21.55 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=21.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 898389970355546889998871087
Q 000904 655 PGQKVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 655 ~G~~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
+.-+++++|..|+|||||++.+.+.-.
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~~~ 42 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIGEV 42 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 668999999999988999988733877
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.79 E-value=0.58 Score=20.43 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=19.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHC
Q ss_conf 3899703555468899988710
Q 000904 658 KVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe 679 (1232)
+++++|..|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.78 E-value=0.51 Score=20.84 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+++++|..|+|||||+..+.+.-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=80.74 E-value=0.46 Score=21.21 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CCCCCEE
Q ss_conf 399998799998688999981465---6885289
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRLV---EPAGGKI 1044 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl~---ep~~G~I 1044 (1232)
-+|+|-|+.||||||..+.|..-+ ..++|.+
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl 37 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 37 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
T ss_conf 5999789998798999999999969947877999
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.70 E-value=0.58 Score=20.41 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=20.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+++++|..|+|||||+..+.+.-
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~ 26 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKR 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999997398
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=80.68 E-value=0.55 Score=20.62 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=19.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 838997035554688999887108
Q 000904 657 QKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 657 ~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
+.+.++|+.||||||+.+.+.-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.67 E-value=0.64 Score=20.09 Aligned_cols=29 Identities=34% Similarity=0.652 Sum_probs=23.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CCCCCE
Q ss_conf 399998799998688999981465---688528
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRLV---EPAGGK 1043 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl~---ep~~G~ 1043 (1232)
=||.++|..|+|||||++-+ ++. .|+-|-
T Consensus 3 iKivllG~~~vGKTsll~r~-~f~~~~~pTiG~ 34 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQM-RIIHGQDPTKGI 34 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHH-HHHHSCCCCSSE
T ss_pred EEEEEECCCCCCHHHHHHHH-HCCCCCCCEEEE
T ss_conf 89999989999989999988-468988872414
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=80.64 E-value=0.71 Score=19.73 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998688999981465
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLV 1037 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~ 1037 (1232)
-+-+.|+.|+|||++++++.+..
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.60 E-value=0.41 Score=21.62 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=23.9
Q ss_pred ECCCCEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 6189838997035554688999887108
Q 000904 653 VRPGQKVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 653 i~~G~~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
++++..+.+.|+.||||||+...|.-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.59 E-value=0.64 Score=20.06 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999986889999814656
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVE 1038 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~rl~e 1038 (1232)
.|.|-|.-||||||+++.|..-++
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=80.59 E-value=0.51 Score=20.84 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=30.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCE
Q ss_conf 99589399998799998688999981465688528-999996
Q 000904 1009 TFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK-ILVDGI 1049 (1232)
Q Consensus 1009 ~I~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~-I~IDG~ 1049 (1232)
=|++|.-+-|.|++|+||||+...+.....-.+|. ++||..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 966735899805777478999999999987089879998654
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=80.58 E-value=0.52 Score=20.81 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=25.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 939999879999868899998146568852899999
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG 1048 (1232)
Q Consensus 1013 GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG 1048 (1232)
+.-+.++||+|+|||.|+++|.+... .--+.+|+
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~ 82 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEA 82 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC--CCHHCCCC
T ss_conf 86699989999888899999862132--21000344
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.57 E-value=0.59 Score=20.35 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
++++||..|+|||||++.+.+.-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999989989999999997098
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=80.42 E-value=0.96 Score=18.70 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=16.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9399998799998688999981
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALF 1034 (1232)
Q Consensus 1013 GekigIVGrTGSGKSTLi~~L~ 1034 (1232)
++.+-|.|+|.+||||+++.+.
T Consensus 35 ~~~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 35 HELVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp SCEEEEESCSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHH
T ss_conf 8679997887345323455658
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=80.30 E-value=0.54 Score=20.66 Aligned_cols=176 Identities=16% Similarity=0.234 Sum_probs=69.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC---CCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCC-C-CCC-CCC
Q ss_conf 999987999986889999814---6568852899999617998967663017888268877765477603-7-799-999
Q 000904 1015 KIGIVGRTGSGKTTLIGALFR---LVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL-D-PLS-QHT 1088 (1232)
Q Consensus 1015 kigIVGrTGSGKSTLi~~L~r---l~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NL-d-p~~-~~s 1088 (1232)
-|||+|..|+|||||+.+|+- ... ..|++. +|-.+......+..+++++-..--.+--..-+-|+ | |.. ++.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC-CCCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHHHH
T ss_conf 999995898998999999999648534-023365-184698565888751886001123431598389995278602269
Q ss_pred HHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE---EECCCCCCCHHHHHHHHHHH
Q ss_conf 999999999859918898400587532238999889369999999998705998899---86667798999799999999
Q 000904 1089 DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV---LDEATASIDNATDMILQKTI 1165 (1232)
Q Consensus 1089 d~eI~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~ILI---LDEaTsslD~~Td~~Iq~~I 1165 (1232)
.+...+|..+-..= .|.+.....-.+-++..-.|+. .+-|+|++ ||-+-+.. ..+.+.|
T Consensus 86 -~e~~~~l~~~D~av-----------lVvda~~Gv~~~T~~~w~~a~~-~~lP~i~fINKmDr~~ad~-----~~~l~ei 147 (276)
T d2bv3a2 86 -IEVERSMRVLDGAI-----------VVFDSSQGVEPQSETVWRQAEK-YKVPRIAFANKMDKTGADL-----WLVIRTM 147 (276)
T ss_dssp -TTHHHHHHHCCEEE-----------EEEETTTSSCHHHHHHHHHHHT-TTCCEEEEEECTTSTTCCH-----HHHHHHH
T ss_pred -HHHHHHHHHHHHEE-----------EECCCCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCC-----CHHHHHH
T ss_conf -99999999630057-----------7322567744669999999998-5999799986445654312-----1268999
Q ss_pred HHHCC-CCEEEEEECC----HHHHHH--CCEEEEEEC---CEEEEECCHHHHHHH
Q ss_conf 98559-9389998449----235640--186999959---879773691478720
Q 000904 1166 RAEFA-DCTVITVAHR----IPTVMD--CTMVLAISD---GKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1166 r~~f~-~~TVI~IAHr----l~tI~~--~DrVlVL~~---G~ivE~g~p~~Ll~~ 1210 (1232)
++.+. .+..+.+-=. ..-+.| ..+.+.-++ ++..+.+-|.++.+.
T Consensus 148 ~~~l~~~~vp~~~Pig~~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~ 202 (276)
T d2bv3a2 148 QERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQ 202 (276)
T ss_dssp HHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHH
T ss_pred HHHHCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCEECCCCHHHHHH
T ss_conf 9985997178983345787513885056108998558888654002585677777
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=80.28 E-value=0.62 Score=20.21 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHC
Q ss_conf 3899703555468899988710
Q 000904 658 KVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe 679 (1232)
+++++|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.23 E-value=0.4 Score=21.72 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHC
Q ss_conf 3899703555468899988710
Q 000904 658 KVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe 679 (1232)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.21 E-value=0.62 Score=20.19 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 38997035554688999887108
Q 000904 658 KVAICGEVGSGKSTLLAAILGEV 680 (1232)
Q Consensus 658 ~vaIvG~vGSGKSTLL~ailGe~ 680 (1232)
++.++|..|+|||||+..+.+.-
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~~ 28 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQKI 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989959899999997098
|